mm9_v1_chr2_-_157392026_157392132	2.36139	NKX2-1,4.p2	AB037891|Blcap|53619|bladder cancer associated protein homolog (human)	BC026935|Blcap|53619|bladder cancer associated protein homolog (human)	BC083339|Blcap|53619|bladder cancer associated protein homolog (human)	AK038884|Blcap|53619|bladder cancer associated protein homolog (human)	AK011673|Blcap|53619|bladder cancer associated protein homolog (human)	AK170338|Blcap|53619|bladder cancer associated protein homolog (human)	AK018127|Blcap|53619|bladder cancer associated protein homolog (human)	NM_016916|Blcap|53619|bladder cancer associated protein homolog (human)
mm9_v1_chr6_+_7505070_7505199	1.94007	NKX2-1,4.p2	D17584|Tac1|21333|tachykinin 1	NM_009311|Tac1|21333|tachykinin 1	BC117081|Tac1|21333|tachykinin 1	BC119122|Tac1|21333|tachykinin 1	BC144737|Tac1|21333|tachykinin 1
mm9_v1_chr1_-_42749940_42749978	1.87031	NKX2-1,4.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr10_-_108448003_108448027	1.60413	NKX2-1,4.p2	BC048187|Syt1|20979|synaptotagmin I	AK019304|Syt1|20979|synaptotagmin I	AK048973|Syt1|20979|synaptotagmin I	AK133578|Syt1|20979|synaptotagmin I
mm9_v1_chr10_-_108447996_108448001	1.60108	NKX2-1,4.p2	AK013798|Syt1|20979|synaptotagmin I	AK078790|Syt1|20979|synaptotagmin I
mm9_v1_chr2_+_61642509_61642690	1.56644	NKX2-1,4.p2	BC052737|Tbr1|21375|T-box brain gene 1	NM_009322|Tbr1|21375|T-box brain gene 1	AK158835|Tbr1|21375|T-box brain gene 1	BC058399|Tbr1|21375|T-box brain gene 1	U49251|Tbr1|21375|T-box brain gene 1
mm9_v1_chr15_+_98885599_98885611	1.54456	NKX2-1,4.p2	AK149021|Prph|19132|peripherin	NM_001163588|Prph|19132|peripherin	NM_001163589|Prph|19132|peripherin	NM_013639|Prph|19132|peripherin	BC046291|Prph|19132|peripherin
mm9_v1_chr18_+_37133455_37133703	1.52924	NKX2-1,4.p2	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr6_+_96063137_96063148	1.3015	NKX2-1,4.p2	AK050001|Fam19a1|320265|family with sequence similarity 19, member A1	NM_182808|Fam19a1|320265|family with sequence similarity 19, member A1
mm9_v1_chr3_+_125106995_125107008	1.16848	NKX2-1,4.p2	AF520870|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	AK140992|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	NM_022565|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm9_v1_chr13_+_54472705_54472742	1.10206	NKX2-1,4.p2	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chrM_+_3913_4410	1.09923	NKX2-1,4.p2	
mm9_v1_chr14_+_14286471_14286627	1.00095	NKX2-1,4.p2	NM_001163032|Synpr|72003|synaptoporin	AK033999|Synpr|72003|synaptoporin	AK032442|Synpr|72003|synaptoporin	AK045705|Synpr|72003|synaptoporin	AK049661|Synpr|72003|synaptoporin
mm9_v1_chr4_+_13670425_13670448	0.972573	NKX2-1,4.p2	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr15_+_21041206_21041206	0.894155	NKX2-1,4.p2	BC086655|Cdh12|215654|cadherin 12	NM_001008420|Cdh12|215654|cadherin 12
mm9_v1_chr2_+_139996381_139996403	0.877018	NKX2-1,4.p2	NM_027093|2310003L22Rik|69487|RIKEN cDNA 2310003L22 gene
mm9_v1_chr19_-_5797068_5797184	0.771151	NKX2-1,4.p2	
mm9_v1_chr13_+_40982534_40982735	0.668656	NKX2-1,4.p2	NM_008105|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK080061|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK054226|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AB037597|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435149|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chrX_+_98494487_98494551	0.651086	NKX2-1,4.p2	NM_172932|Nlgn3|245537|neuroligin 3	AK039018|Nlgn3|245537|neuroligin 3
mm9_v1_chrM_+_12178_12184	0.618507	NKX2-1,4.p2	
mm9_v1_chr9_-_71743854_71743929	0.595056	NKX2-1,4.p2	AK135376|Tcf12|21406|transcription factor 12	AK132002|Tcf12|21406|transcription factor 12	AK133958|Tcf12|21406|transcription factor 12	AK078415|Tcf12|21406|transcription factor 12
mm9_v1_chr1_-_135817867_135817935	0.582	NKX2-1,4.p2	
mm9_v1_chr3_+_89324085_89324085	0.579609	NKX2-1,4.p2	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr10_-_108447894_108447956	0.532372	NKX2-1,4.p2	D37792|Syt1|20979|synaptotagmin I	AK164153|Syt1|20979|synaptotagmin I	AK018163|Syt1|20979|synaptotagmin I
mm9_v1_chrX_+_35954355_35954475	0.52329	NKX2-1,4.p2	AK138385|Mcts1|68995|malignant T cell amplified sequence 1	BC037103|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chrX_-_140367467_140367853	0.490328	NKX2-1,4.p2	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr8_+_56040193_56040201	0.488575	NKX2-1,4.p2	AK081877|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr1_+_174051888_174051985	0.484434	NKX2-1,4.p2	
mm9_v1_chr2_-_38499436_38499462	0.480797	NKX2-1,4.p2	AK088765|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK075759|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK162002|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	Y10874|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK002823|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK031913|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7
mm9_v1_chr1_-_135817945_135817982	0.441323	NKX2-1,4.p2	AK037150|Prelp|116847|proline arginine-rich end leucine-rich repeat	BC019775|Prelp|116847|proline arginine-rich end leucine-rich repeat	AK047480|Prelp|116847|proline arginine-rich end leucine-rich repeat	NM_054077|Prelp|116847|proline arginine-rich end leucine-rich repeat
mm9_v1_chr1_+_122498985_122498994	0.432379	NKX2-1,4.p2	AK140634|En1|13798|engrailed 1
mm9_v1_chr6_-_91757386_91757427	0.415935	NKX2-1,4.p2	NM_001159507|Grip2|243547|glutamate receptor interacting protein 2
mm9_v1_chr2_-_34610751_34610751	0.411612	NKX2-1,4.p2	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr9_+_122481617_122481627	0.409519	NKX2-1,4.p2	AK048438|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK049978|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK079255|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK084074|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK135014|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene
mm9_v1_chr7_-_91827857_91827907	0.402606	NKX2-1,4.p2	AK002775|Zfand6|65098|zinc finger, AN1-type domain 6	NM_022985|Zfand6|65098|zinc finger, AN1-type domain 6	AK144902|Zfand6|65098|zinc finger, AN1-type domain 6	AK009403|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chr2_-_38499375_38499435	0.384875	NKX2-1,4.p2	BC049230|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	BC033424|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK012613|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	D83585|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	NM_011187|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	BC057662|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK168823|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK013961|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7	AK088276|Psmb7|19177|proteasome (prosome, macropain) subunit, beta type 7
mm9_v1_chr17_-_90436488_90436574	0.382874	NKX2-1,4.p2	AJ006802|Nrxn1|18189|neurexin I
mm9_v1_chr9_-_122220036_122220045	0.367757	NKX2-1,4.p2	
mm9_v1_chrX_-_100381973_100382006	0.36486	NKX2-1,4.p2	X92352|Nap1l2|17954|nucleosome assembly protein 1-like 2	NM_008671|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr3_+_116564564_116564609	0.34244	NKX2-1,4.p2	NM_009146|Frrs1|20321|ferric-chelate reductase 1	AK075573|Frrs1|20321|ferric-chelate reductase 1	AK144933|Frrs1|20321|ferric-chelate reductase 1	AK162693|Frrs1|20321|ferric-chelate reductase 1	D50464|Frrs1|20321|ferric-chelate reductase 1
mm9_v1_chr16_-_23520662_23520727	0.326388	NKX2-1,4.p2	BC131637|Masp1|17174|mannan-binding lectin serine peptidase 1	BC131638|Masp1|17174|mannan-binding lectin serine peptidase 1	NM_008555|Masp1|17174|mannan-binding lectin serine peptidase 1	AK032944|Masp1|17174|mannan-binding lectin serine peptidase 1	AB049755|Masp1|17174|mannan-binding lectin serine peptidase 1	D16492|Masp1|17174|mannan-binding lectin serine peptidase 1	AK043055|Masp1|17174|mannan-binding lectin serine peptidase 1	AK031598|Masp1|17174|mannan-binding lectin serine peptidase 1
mm9_v1_chr1_-_181682859_181682906	0.324977	NKX2-1,4.p2	AK016646|Ahctf1|226747|AT hook containing transcription factor 1
mm9_v1_chr18_+_37112301_37112419	0.322621	NKX2-1,4.p2	AK149282|Pcdha4|12936|protocadherin alpha 4	AK048980|Pcdha4|12936|protocadherin alpha 4	BC060211|Pcdha4|12936|protocadherin alpha 4	D86916|Pcdha4|12936|protocadherin alpha 4	NM_007766|Pcdha4|12936|protocadherin alpha 4	AF464180|Pcdha4-g|100384868|protocadherin alpha 4-gamma	NM_001174154|Pcdha4-g|100384868|protocadherin alpha 4-gamma	AY013762|Pcdha4|12936|protocadherin alpha 4
mm9_v1_chr4_+_13678443_13678575	0.288635	NKX2-1,4.p2	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chrX_-_7709907_7709983	0.274986	NKX2-1,4.p2	BC080853|Wdr13|73447|WD repeat domain 13	BC057366|Wdr13|73447|WD repeat domain 13	NM_026137|Wdr13|73447|WD repeat domain 13
mm9_v1_chr7_-_29551532_29551548	0.272995	NKX2-1,4.p2	AY176059|Nfkbib|18036|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	AK038631|Nfkbib|18036|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	NM_010908|Nfkbib|18036|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta
mm9_v1_chr6_-_136121885_136121906	0.265581	NKX2-1,4.p2	AK163195|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm9_v1_chr10_-_33344405_33344571	0.26109	NKX2-1,4.p2	AK039308|Clvs2|215890|clavesin 2	NM_175448|Clvs2|215890|clavesin 2	BC058539|Clvs2|215890|clavesin 2	AK163214|Clvs2|215890|clavesin 2	AK053797|Clvs2|215890|clavesin 2	AK139868|Clvs2|215890|clavesin 2	AK139409|Clvs2|215890|clavesin 2	AK169009|Clvs2|215890|clavesin 2
mm9_v1_chr2_+_119851954_119852060	0.259643	NKX2-1,4.p2	AK013436|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	BC039800|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	BC032269|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1	BC054087|Mapkbp1|26390|mitogen-activated protein kinase binding protein 1
mm9_v1_chr8_+_56040211_56040342	0.252567	NKX2-1,4.p2	BC043130|Gpm6a|234267|glycoprotein m6a	AK147245|Gpm6a|234267|glycoprotein m6a	AK147280|Gpm6a|234267|glycoprotein m6a
mm9_v1_chrM_+_11812_11845	0.250212	NKX2-1,4.p2	
mm9_v1_chrM_+_12383_12506	0.239159	NKX2-1,4.p2	
mm9_v1_chr2_-_77541328_77541435	0.216855	NKX2-1,4.p2	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr11_+_67090625_67090855	0.216307	NKX2-1,4.p2	NM_177369|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021877|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021876|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	BC150737|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK029328|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK081482|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK087387|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AY963802|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021878|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal
mm9_v1_chr9_+_96159666_96159703	0.208231	NKX2-1,4.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr17_+_88382830_88382866	0.20585	NKX2-1,4.p2	BC035274|Msh6|17688|mutS homolog 6 (E. coli)
mm9_v1_chr2_+_169459145_169459258	0.197911	NKX2-1,4.p2	NM_080455|Tshz2|228911|teashirt zinc finger family member 2	BC079550|Tshz2|228911|teashirt zinc finger family member 2
mm9_v1_chr3_-_107734481_107734662	0.191174	NKX2-1,4.p2	AK162441|Gstm7|68312|glutathione S-transferase, mu 7	AK002213|Gstm7|68312|glutathione S-transferase, mu 7	BC051924|Gstm7|68312|glutathione S-transferase, mu 7	NM_026672|Gstm7|68312|glutathione S-transferase, mu 7
mm9_v1_chr2_+_139996419_139996521	0.187998	NKX2-1,4.p2	BC005630|2310003L22Rik|69487|RIKEN cDNA 2310003L22 gene	AK188392|2310003L22Rik|69487|RIKEN cDNA 2310003L22 gene	AK187586|2310003L22Rik|69487|RIKEN cDNA 2310003L22 gene
mm9_v1_chr7_+_148654681_148654765	0.182785	NKX2-1,4.p2	NM_001111050|Cd151|12476|CD151 antigen	U89772|Cd151|12476|CD151 antigen	BC012236|Cd151|12476|CD151 antigen
mm9_v1_chr7_-_148040227_148040484	0.181394	NKX2-1,4.p2	BC052402|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	AK003184|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr16_+_49906392_49906404	0.180892	NKX2-1,4.p2	
mm9_v1_chr7_-_125263314_125263384	0.170604	NKX2-1,4.p2	AK004228|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK012904|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK005514|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr4_-_136891931_136891995	0.161631	NKX2-1,4.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr9_-_58050340_58050340	0.160681	NKX2-1,4.p2	NM_001161538|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr8_-_47292863_47292905	0.160511	NKX2-1,4.p2	
mm9_v1_chr7_+_26086377_26086429	0.159638	NKX2-1,4.p2	NM_001081294|Prr19|623131|proline rich 19	BC147639|Prr19|623131|proline rich 19	BC147641|Prr19|623131|proline rich 19	BC147701|Prr19|623131|proline rich 19	BC147708|Prr19|623131|proline rich 19
mm9_v1_chr8_+_119983664_119983684	0.158787	NKX2-1,4.p2	
mm9_v1_chr4_-_58083082_58083145	0.155153	NKX2-1,4.p2	AK136952|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr7_+_3336653_3336684	0.149066	NKX2-1,4.p2	BC141277|Cacng7|81904|calcium channel, voltage-dependent, gamma subunit 7	AF361349|Cacng7|81904|calcium channel, voltage-dependent, gamma subunit 7	AF458899|Cacng7|81904|calcium channel, voltage-dependent, gamma subunit 7	NM_133189|Cacng7|81904|calcium channel, voltage-dependent, gamma subunit 7
mm9_v1_chr16_-_38445988_38446143	0.14639	NKX2-1,4.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr5_+_22988226_22988243	0.14277	NKX2-1,4.p2	
mm9_v1_chr12_+_17285392_17285402	0.140956	NKX2-1,4.p2	AK211058|Pdia6|71853|protein disulfide isomerase associated 6	AK217964|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr9_-_21035212_21035311	0.138725	NKX2-1,4.p2	AK178920|Keap1|50868|kelch-like ECH-associated protein 1	AK200527|Keap1|50868|kelch-like ECH-associated protein 1
mm9_v1_chr11_-_101139357_101139490	0.136236	NKX2-1,4.p2	
mm9_v1_chr11_+_117864696_117864817	0.135284	NKX2-1,4.p2	BC022918|Pgs1|74451|phosphatidylglycerophosphate synthase 1
mm9_v1_chr1_-_177422520_177422553	0.130773	NKX2-1,4.p2	AF011360|Rgs7|24012|regulator of G protein signaling 7
mm9_v1_chr16_+_49913305_49913369	0.128478	NKX2-1,4.p2	AK050387|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr2_-_120365581_120365597	0.127631	NKX2-1,4.p2	U59739|Zfp106|20402|zinc finger protein 106
mm9_v1_chr3_-_129035406_129035666	0.125674	NKX2-1,4.p2	DQ000292|Enpep|13809|glutamyl aminopeptidase	M29961|Enpep|13809|glutamyl aminopeptidase	BC127060|Enpep|13809|glutamyl aminopeptidase	BC064061|Enpep|13809|glutamyl aminopeptidase	AK128975|Enpep|13809|glutamyl aminopeptidase	AK034613|Enpep|13809|glutamyl aminopeptidase	AK146808|Enpep|13809|glutamyl aminopeptidase	NM_007934|Enpep|13809|glutamyl aminopeptidase
mm9_v1_chr16_+_23520391_23520449	0.125045	NKX2-1,4.p2	
mm9_v1_chr10_-_75227029_75227101	0.118581	NKX2-1,4.p2	BC057551|Cabin1|104248|calcineurin binding protein 1	AK168811|Cabin1|104248|calcineurin binding protein 1	AK162479|Cabin1|104248|calcineurin binding protein 1	AK078480|Cabin1|104248|calcineurin binding protein 1	NM_172549|Cabin1|104248|calcineurin binding protein 1
mm9_v1_chr18_+_78021267_78021344	0.113386	NKX2-1,4.p2	
mm9_v1_chr7_+_28018002_28018114	0.106335	NKX2-1,4.p2	NM_133770|Adck4|76889|aarF domain containing kinase 4	AK002619|Adck4|76889|aarF domain containing kinase 4
mm9_v1_chr2_+_79547936_79548278	0.105863	NKX2-1,4.p2	AK051670|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	NM_172420|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC120706|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC132149|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK051449|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK157871|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK083940|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm9_v1_chr17_+_37210011_37210126	0.10405	NKX2-1,4.p2	AK013692|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chr5_+_147762106_147762155	0.102382	NKX2-1,4.p2	BC032292|Gtf3a|66596|general transcription factor III A
mm9_v1_chr2_+_91512033_91512158	0.0952225	NKX2-1,4.p2	AK083702|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr8_-_87369780_87369877	0.0931545	NKX2-1,4.p2	
mm9_v1_chr2_+_38441497_38441644	0.092994	NKX2-1,4.p2	AK214670|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK208733|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6
mm9_v1_chr3_+_95465860_95465866	0.0929798	NKX2-1,4.p2	AK160634|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr9_+_57369044_57369118	0.0928705	NKX2-1,4.p2	BC003831|Cox5a|12858|cytochrome c oxidase, subunit Va	BC034302|Cox5a|12858|cytochrome c oxidase, subunit Va	AK018723|Cox5a|12858|cytochrome c oxidase, subunit Va	X15963|Cox5a|12858|cytochrome c oxidase, subunit Va
mm9_v1_chr16_-_88648032_88648040	0.0922765	NKX2-1,4.p2	BC128283|Krtap26-1|69533|keratin associated protein 26-1	BC139410|Krtap26-1|69533|keratin associated protein 26-1	BC139411|Krtap26-1|69533|keratin associated protein 26-1	AK009086|Krtap26-1|69533|keratin associated protein 26-1	NM_027105|Krtap26-1|69533|keratin associated protein 26-1
mm9_v1_chr1_+_98920975_98921101	0.091283	NKX2-1,4.p2	
mm9_v1_chr9_+_38185467_38185476	0.0907984	NKX2-1,4.p2	BC106986|Olfr900|258874|olfactory receptor 900	NM_146874|Olfr900|258874|olfactory receptor 900	NM_207553|Olfr251|404313|olfactory receptor 251
mm9_v1_chr9_+_72596925_72596929	0.0907113	NKX2-1,4.p2	AK195685|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr4_+_154927385_154927543	0.089919	NKX2-1,4.p2	BC003294|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr9_-_119835967_119836242	0.0880333	NKX2-1,4.p2	AK198424|Gorasp1|74498|golgi reassembly stacking protein 1	AK209806|Gorasp1|74498|golgi reassembly stacking protein 1	AK213744|Gorasp1|74498|golgi reassembly stacking protein 1	AK204247|Gorasp1|74498|golgi reassembly stacking protein 1
mm9_v1_chr1_-_184246785_184246786	0.0875323	NKX2-1,4.p2	AK028774|Fbxo28|67948|F-box protein 28
mm9_v1_chr13_+_55827167_55827225	0.0871347	NKX2-1,4.p2	AK209800|Txndc15|69672|thioredoxin domain containing 15	AK213704|Txndc15|69672|thioredoxin domain containing 15	AK206830|Txndc15|69672|thioredoxin domain containing 15
mm9_v1_chr18_+_34475207_34475256	0.0866149	NKX2-1,4.p2	AK142170|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr2_-_91516101_91516113	0.083107	NKX2-1,4.p2	BC024457|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chrX_-_108810630_108810687	0.0821983	NKX2-1,4.p2	BC116300|Hdx|245596|highly divergent homeobox	BC116301|Hdx|245596|highly divergent homeobox	AK083436|Hdx|245596|highly divergent homeobox	NM_001080549|Hdx|245596|highly divergent homeobox
mm9_v1_chr16_-_87486487_87486518	0.0817858	NKX2-1,4.p2	AK207150|Cct8|12469|chaperonin containing Tcp1, subunit 8 (theta)
mm9_v1_chr10_+_80645192_80645203	0.0807352	NKX2-1,4.p2	
mm9_v1_chr3_-_108365049_108365097	0.0795594	NKX2-1,4.p2	AK155399|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr1_-_157626552_157626641	0.0753705	NKX2-1,4.p2	AK171601|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1
mm9_v1_chr4_-_120597563_120597650	0.0747637	NKX2-1,4.p2	BC023360|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	AK014134|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_001160043|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_028457|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)
mm9_v1_chr4_+_154932761_154932805	0.0739255	NKX2-1,4.p2	AK194739|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK203879|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK205062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chrX_-_137491205_137491263	0.0728278	NKX2-1,4.p2	AB022022|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	BC026931|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	BC056196|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK009068|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK018233|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK136400|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	NM_001164177|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	NM_016883|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm9_v1_chr5_-_138362822_138362852	0.0697927	NKX2-1,4.p2	X63023|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	BC046592|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136494|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136529|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK149572|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	NM_007819|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13
mm9_v1_chr17_+_49754460_49754540	0.0683235	NKX2-1,4.p2	AK083760|Kif6|319991|kinesin family member 6	NM_177052|Kif6|319991|kinesin family member 6	AK043404|Kif6|319991|kinesin family member 6
mm9_v1_chr9_+_123428782_123429096	0.0679187	NKX2-1,4.p2	AK212865|Limd1|29806|LIM domains containing 1	AK218834|Limd1|29806|LIM domains containing 1	AK213065|Limd1|29806|LIM domains containing 1	AK214169|Limd1|29806|LIM domains containing 1	AK211030|Limd1|29806|LIM domains containing 1
mm9_v1_chr1_+_174048400_174048426	0.0670854	NKX2-1,4.p2	BC005609|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr13_+_100897826_100897856	0.066806	NKX2-1,4.p2	AK208849|Smn1|20595|survival motor neuron 1	AK214738|Smn1|20595|survival motor neuron 1
mm9_v1_chr4_+_123613778_123613862	0.0663981	NKX2-1,4.p2	AK003876|Rragc|54170|Ras-related GTP binding C	AK196968|Rragc|54170|Ras-related GTP binding C	AK177349|Rragc|54170|Ras-related GTP binding C	AK196201|Rragc|54170|Ras-related GTP binding C	AK204008|Rragc|54170|Ras-related GTP binding C	AK213206|Rragc|54170|Ras-related GTP binding C
mm9_v1_chr5_-_33996918_33997007	0.0657986	NKX2-1,4.p2	AK010497|Tmem129|68366|transmembrane protein 129
mm9_v1_chr3_-_58984006_58984035	0.0632161	NKX2-1,4.p2	AF295366|Gpr87|84111|G protein-coupled receptor 87	NM_032399|Gpr87|84111|G protein-coupled receptor 87	BC125653|Gpr87|84111|G protein-coupled receptor 87	BC125655|Gpr87|84111|G protein-coupled receptor 87
mm9_v1_chr9_-_110018085_110018088	0.0628822	NKX2-1,4.p2	AB047557|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	NM_133347|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	BC058331|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr11_+_98630271_98630309	0.0627068	NKX2-1,4.p2	AK053029|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr1_-_36864987_36865029	0.0618453	NKX2-1,4.p2	BC120906|Tmem131|56030|transmembrane protein 131	BC139734|Tmem131|56030|transmembrane protein 131
mm9_v1_chr10_+_74980744_74980788	0.0617689	NKX2-1,4.p2	AK005341|Snrpd3|67332|small nuclear ribonucleoprotein D3	AK019078|Snrpd3|67332|small nuclear ribonucleoprotein D3	AK006692|Snrpd3|67332|small nuclear ribonucleoprotein D3	NM_026095|Snrpd3|67332|small nuclear ribonucleoprotein D3
mm9_v1_chr9_+_123429291_123429490	0.0606522	NKX2-1,4.p2	AK180316|Limd1|29806|LIM domains containing 1	AK212225|Limd1|29806|LIM domains containing 1	AK215267|Limd1|29806|LIM domains containing 1	AK215631|Limd1|29806|LIM domains containing 1	AK216846|Limd1|29806|LIM domains containing 1	AK220081|Limd1|29806|LIM domains containing 1	AK210611|Limd1|29806|LIM domains containing 1
mm9_v1_chr7_-_112706892_112707045	0.0603354	NKX2-1,4.p2	
mm9_v1_chr17_+_64245366_64245425	0.0596322	NKX2-1,4.p2	NM_001037997|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	U76762|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AF286537|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr7_+_19791687_19791691	0.0589688	NKX2-1,4.p2	AK215580|Eml2|72205|echinoderm microtubule associated protein like 2
mm9_v1_chr17_+_31432427_31432427	0.0584188	NKX2-1,4.p2	BC027294|Slc37a1|224674|solute carrier family 37 (glycerol-3-phosphate transporter), member 1	NM_153062|Slc37a1|224674|solute carrier family 37 (glycerol-3-phosphate transporter), member 1
mm9_v1_chr11_+_75578120_75578179	0.0571449	NKX2-1,4.p2	AK218111|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK180909|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr1_+_75165201_75165358	0.0568345	NKX2-1,4.p2	NM_001159905|Zfand2b|68818|zinc finger, AN1 type domain 2B	NM_001159906|Zfand2b|68818|zinc finger, AN1 type domain 2B	BC011495|Zfand2b|68818|zinc finger, AN1 type domain 2B	AK151430|Zfand2b|68818|zinc finger, AN1 type domain 2B	NM_026846|Zfand2b|68818|zinc finger, AN1 type domain 2B	AK004332|Zfand2b|68818|zinc finger, AN1 type domain 2B
mm9_v1_chr2_+_26203297_26203537	0.0563609	NKX2-1,4.p2	AK007593|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)	AK211070|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm9_v1_chr7_-_108971734_108971860	0.0560513	NKX2-1,4.p2	
mm9_v1_chr12_+_111879117_111879122	0.05522	NKX2-1,4.p2	AK122249|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1
mm9_v1_chr17_+_71596413_71596481	0.0544904	NKX2-1,4.p2	AK021389|Lpin2|64898|lipin 2
mm9_v1_chr6_-_38074549_38074585	0.0526814	NKX2-1,4.p2	AK165464|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AF435090|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK128892|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK143790|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	NM_080467|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4
mm9_v1_chr7_+_135273060_135273088	0.0520716	NKX2-1,4.p2	AK155816|Itgax|16411|integrin alpha X	AK089167|Itgax|16411|integrin alpha X	AK170432|Itgax|16411|integrin alpha X	AK131133|Itgax|16411|integrin alpha X	BC042840|Itgax|16411|integrin alpha X	AF211864|Itgax|16411|integrin alpha X	NM_021334|Itgax|16411|integrin alpha X	BC057200|Itgax|16411|integrin alpha X
mm9_v1_chr17_+_35263978_35264059	0.0507598	NKX2-1,4.p2	BC138707|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	BC138708|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	NM_033477|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E
mm9_v1_chr2_+_162760505_162760606	0.0498799	NKX2-1,4.p2	
mm9_v1_chr3_-_103545641_103545788	0.049005	NKX2-1,4.p2	AK159746|Hipk1|15257|homeodomain interacting protein kinase 1	AK076611|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr15_-_102062331_102062365	0.0481975	NKX2-1,4.p2	AK155207|Itgb7|16421|integrin beta 7	AK155594|Itgb7|16421|integrin beta 7	AK144773|Itgb7|16421|integrin beta 7	BC011184|Itgb7|16421|integrin beta 7	AK078871|Itgb7|16421|integrin beta 7	AK154766|Itgb7|16421|integrin beta 7	NM_013566|Itgb7|16421|integrin beta 7
mm9_v1_chr7_-_107475377_107475426	0.0477166	NKX2-1,4.p2	
mm9_v1_chr9_+_114624257_114624316	0.0476891	NKX2-1,4.p2	AK205150|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK217382|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chr4_-_142718290_142718420	0.0465102	NKX2-1,4.p2	AK136099|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr10_-_24647173_24647229	0.046253	NKX2-1,4.p2	CT010173|Arg1|11846|arginase, liver
mm9_v1_chr7_-_87245668_87245779	0.0458618	NKX2-1,4.p2	AK181957|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK212860|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm9_v1_chr8_+_131237118_131237130	0.0453663	NKX2-1,4.p2	AK076526|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr12_+_17285655_17285671	0.0449597	NKX2-1,4.p2	AK179393|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr7_+_54110791_54110836	0.0438013	NKX2-1,4.p2	
mm9_v1_chr16_+_48816968_48817099	0.0430322	NKX2-1,4.p2	AF290871|Retnlb|57263|resistin like beta	NM_023881|Retnlb|57263|resistin like beta	AK020240|Retnlb|57263|resistin like beta	AF323083|Retnlb|57263|resistin like beta	BC022650|Retnlb|57263|resistin like beta
mm9_v1_chr10_+_80644982_80645055	0.0422318	NKX2-1,4.p2	
mm9_v1_chr17_-_74242984_74243003	0.0400305	NKX2-1,4.p2	BC003997|Xdh|22436|xanthine dehydrogenase
mm9_v1_chr8_+_113381876_113381915	0.0397385	NKX2-1,4.p2	AK193863|Cog4|102339|component of oligomeric golgi complex 4
mm9_v1_chr3_-_108365251_108365316	0.0393027	NKX2-1,4.p2	AK046697|Tmem167b|67495|transmembrane protein 167B	BC050932|Tmem167b|67495|transmembrane protein 167B	AK008415|Tmem167b|67495|transmembrane protein 167B	BC055449|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr3_-_108707417_108707441	0.0384975	NKX2-1,4.p2	AK007374|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm9_v1_chr18_-_60760086_60760117	0.0371247	NKX2-1,4.p2	AK034012|Synpo|104027|synaptopodin
mm9_v1_chr11_-_119971500_119971623	0.0356275	NKX2-1,4.p2	AK195379|Slc38a10|72055|solute carrier family 38, member 10	AK176940|Slc38a10|72055|solute carrier family 38, member 10	AK182790|Slc38a10|72055|solute carrier family 38, member 10	BC055017|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr2_-_85036855_85036855	0.0355241	NKX2-1,4.p2	AK134968|Lrrc55|241528|leucine rich repeat containing 55	BC141221|Lrrc55|241528|leucine rich repeat containing 55	NM_001033346|Lrrc55|241528|leucine rich repeat containing 55
mm9_v1_chr4_+_115761660_115761879	0.0355195	NKX2-1,4.p2	BC007169|Lrrc41|230654|leucine rich repeat containing 41	AK181367|Lrrc41|230654|leucine rich repeat containing 41
mm9_v1_chr3_+_95091630_95092080	0.0347617	NKX2-1,4.p2	BC132301|Fam63a|75007|family with sequence similarity 63, member A	BC144749|Fam63a|75007|family with sequence similarity 63, member A	AK191590|Fam63a|75007|family with sequence similarity 63, member A	AK211364|Fam63a|75007|family with sequence similarity 63, member A	AB075603|Fam63a|75007|family with sequence similarity 63, member A	BC051048|Fam63a|75007|family with sequence similarity 63, member A	BC039762|Fam63a|75007|family with sequence similarity 63, member A
mm9_v1_chr6_-_126485370_126485572	0.0345977	NKX2-1,4.p2	BC021787|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	AK146843|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	AF108659|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	L22218|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	NM_145983|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5
mm9_v1_chr18_+_25224729_25224737	0.0339168	NKX2-1,4.p2	BC060607|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr1_-_75132977_75133049	0.0338166	NKX2-1,4.p2	AK209717|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	AK183285|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	AK180897|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene
mm9_v1_chr1_-_136700389_136700428	0.0330288	NKX2-1,4.p2	AK035285|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm9_v1_chr1_-_188573165_188573236	0.0329081	NKX2-1,4.p2	AK007616|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013217|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	BC006787|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK010658|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK087997|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013204|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK169088|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	NM_026041|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)
mm9_v1_chr16_+_17331463_17331501	0.0327241	NKX2-1,4.p2	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr5_-_134718500_134718616	0.0326826	NKX2-1,4.p2	AK183312|Gtf2i|14886|general transcription factor II I	AK211276|Gtf2i|14886|general transcription factor II I
mm9_v1_chr17_+_87762817_87762839	0.0326778	NKX2-1,4.p2	BC057906|Ttc7|225049|tetratricopeptide repeat domain 7
mm9_v1_chr7_-_52870858_52870859	0.0322415	NKX2-1,4.p2	BC049592|Fgf21|56636|fibroblast growth factor 21	AK007574|Fgf21|56636|fibroblast growth factor 21	NM_020013|Fgf21|56636|fibroblast growth factor 21
mm9_v1_chr18_-_61874531_61874583	0.0319825	NKX2-1,4.p2	BC024866|Grpel2|17714|GrpE-like 2, mitochondrial
mm9_v1_chr17_+_24641034_24641180	0.0319557	NKX2-1,4.p2	AK049987|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr11_-_68825972_68825998	0.0316513	NKX2-1,4.p2	
mm9_v1_chr6_+_123179860_123179891	0.0304715	NKX2-1,4.p2	NM_001190320|Clec4n|56620|C-type lectin domain family 4, member n	NM_001190321|Clec4n|56620|C-type lectin domain family 4, member n	NM_020001|Clec4n|56620|C-type lectin domain family 4, member n	AK089166|Clec4n|56620|C-type lectin domain family 4, member n	AK131697|Clec4n|56620|C-type lectin domain family 4, member n	AK154673|Clec4n|56620|C-type lectin domain family 4, member n	AK171046|Clec4n|56620|C-type lectin domain family 4, member n	AF240357|Clec4n|56620|C-type lectin domain family 4, member n	AF240358|Clec4n|56620|C-type lectin domain family 4, member n	AF240359|Clec4n|56620|C-type lectin domain family 4, member n	BC023008|Clec4n|56620|C-type lectin domain family 4, member n
mm9_v1_chr9_+_108849434_108849501	0.0289109	NKX2-1,4.p2	BC018405|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr2_+_14978339_14978456	0.0286641	NKX2-1,4.p2	
mm9_v1_chr18_+_32416881_32416904	0.0284322	NKX2-1,4.p2	BC024446|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3
mm9_v1_chr9_-_7932402_7932403	0.0283039	NKX2-1,4.p2	AK212471|Yap1|22601|yes-associated protein 1	AK215870|Yap1|22601|yes-associated protein 1
mm9_v1_chr12_-_110098804_110098955	0.0280769	NKX2-1,4.p2	AK185973|Wars|22375|tryptophanyl-tRNA synthetase
mm9_v1_chr4_+_95246111_95246193	0.0280312	NKX2-1,4.p2	NM_029347|Fggy|75578|FGGY carbohydrate kinase domain containing	AK085534|Fggy|75578|FGGY carbohydrate kinase domain containing	BC031708|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr2_-_167469448_167469594	0.0275169	NKX2-1,4.p2	AK188596|Tmem189|407243|transmembrane protein 189	AK197639|Tmem189|407243|transmembrane protein 189
mm9_v1_chr6_+_115189004_115189072	0.0274893	NKX2-1,4.p2	AK029181|Syn2|20965|synapsin II
mm9_v1_chr7_+_54110679_54110700	0.0273861	NKX2-1,4.p2	
mm9_v1_chr15_+_66723067_66723074	0.0261476	NKX2-1,4.p2	AF100777|Wisp1|22402|WNT1 inducible signaling pathway protein 1
mm9_v1_chr10_+_80642090_80642181	0.0261013	NKX2-1,4.p2	AK181629|Eef2|13629|eukaryotic translation elongation factor 2	AK201884|Eef2|13629|eukaryotic translation elongation factor 2	AK204699|Eef2|13629|eukaryotic translation elongation factor 2	AK180467|Eef2|13629|eukaryotic translation elongation factor 2	AK181200|Eef2|13629|eukaryotic translation elongation factor 2	AK186921|Eef2|13629|eukaryotic translation elongation factor 2	AK188336|Eef2|13629|eukaryotic translation elongation factor 2	AK190731|Eef2|13629|eukaryotic translation elongation factor 2	AK194466|Eef2|13629|eukaryotic translation elongation factor 2	AK195325|Eef2|13629|eukaryotic translation elongation factor 2	AK196186|Eef2|13629|eukaryotic translation elongation factor 2	AK199686|Eef2|13629|eukaryotic translation elongation factor 2	AK201455|Eef2|13629|eukaryotic translation elongation factor 2	AK205017|Eef2|13629|eukaryotic translation elongation factor 2	AK205497|Eef2|13629|eukaryotic translation elongation factor 2	AK218992|Eef2|13629|eukaryotic translation elongation factor 2	AK219772|Eef2|13629|eukaryotic translation elongation factor 2	AK192474|Eef2|13629|eukaryotic translation elongation factor 2	AK187321|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr14_-_51550327_51550600	0.025967	NKX2-1,4.p2	BC049945|Tmem55b|219024|transmembrane protein 55b	BC039161|Tmem55b|219024|transmembrane protein 55b	BC058171|Tmem55b|219024|transmembrane protein 55b	BC106163|Tmem55b|219024|transmembrane protein 55b	AK152640|Tmem55b|219024|transmembrane protein 55b	AK152658|Tmem55b|219024|transmembrane protein 55b	AK144251|Tmem55b|219024|transmembrane protein 55b	NM_001033271|Tmem55b|219024|transmembrane protein 55b	AK159641|Tmem55b|219024|transmembrane protein 55b	AK169026|Tmem55b|219024|transmembrane protein 55b	BC027355|Tmem55b|219024|transmembrane protein 55b
mm9_v1_chr8_-_95603838_95603915	0.0258388	NKX2-1,4.p2	NM_001081372|Ces1b|382044|carboxylesterase 1B
mm9_v1_chr2_+_4897196_4897196	0.0251207	NKX2-1,4.p2	EF529510|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr6_+_29325052_29325077	0.0250627	NKX2-1,4.p2	AF177023|Calu|12321|calumenin
mm9_v1_chr2_-_32279522_32279542	0.0246617	NKX2-1,4.p2	BC022114|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	BC019978|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr1_-_175696989_175697156	0.0229463	NKX2-1,4.p2	AK150522|Ifi204|15951|interferon activated gene 204	NM_008329|Ifi204|15951|interferon activated gene 204	AK138785|Ifi204|15951|interferon activated gene 204
mm9_v1_chr8_+_74676812_74676920	0.0225765	NKX2-1,4.p2	
mm9_v1_chr4_+_155246871_155246997	0.0224971	NKX2-1,4.p2	AK180161|Cpsf3l|71957|cleavage and polyadenylation specific factor 3-like
mm9_v1_chr7_+_51031646_51031698	0.0216337	NKX2-1,4.p2	AB016226|Klk11|56538|kallikrein related-peptidase 11	BC115518|Klk11|56538|kallikrein related-peptidase 11	BC148310|Klk11|56538|kallikrein related-peptidase 11	NM_019974|Klk11|56538|kallikrein related-peptidase 11
mm9_v1_chr17_+_29839370_29839515	0.0214206	NKX2-1,4.p2	
mm9_v1_chr6_+_135313056_135313087	0.0210937	NKX2-1,4.p2	AK168806|Emp1|13730|epithelial membrane protein 1	U25633|Emp1|13730|epithelial membrane protein 1	BC138491|Emp1|13730|epithelial membrane protein 1
mm9_v1_chr11_-_94900779_94900799	0.0209471	NKX2-1,4.p2	AK181188|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK192357|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK194016|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK216417|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK218086|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2
mm9_v1_chr3_+_95965959_95965978	0.0204701	NKX2-1,4.p2	BC051083|Mtmr11|194126|myotubularin related protein 11
mm9_v1_chr9_-_71326295_71326316	0.0203218	NKX2-1,4.p2	
mm9_v1_chr13_-_41923709_41923740	0.0201304	NKX2-1,4.p2	BC027755|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene
mm9_v1_chr16_+_17331507_17331521	0.0198447	NKX2-1,4.p2	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr8_+_108703203_108703313	0.0190106	NKX2-1,4.p2	
mm9_v1_chr17_-_23981121_23981138	0.0189316	NKX2-1,4.p2	AK016509|Prss41|71003|protease, serine, 41	AB049453|Prss41|71003|protease, serine, 41	NM_027644|Prss41|71003|protease, serine, 41	AK049297|Prss41|71003|protease, serine, 41	BC145586|Prss41|71003|protease, serine, 41	BC150797|Prss41|71003|protease, serine, 41
mm9_v1_chr2_+_34729973_34730037	0.0177649	NKX2-1,4.p2	AK021330|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	BC021771|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene
mm9_v1_chr7_-_20277921_20277955	0.0168204	NKX2-1,4.p2	AK011358|Apoc1|11812|apolipoprotein C-I	NM_007469|Apoc1|11812|apolipoprotein C-I
mm9_v1_chr11_-_60016324_60016387	0.016345	NKX2-1,4.p2	
mm9_v1_chr16_-_24090166_24090201	0.0162009	NKX2-1,4.p2	
mm9_v1_chr9_-_44611055_44611072	0.0160918	NKX2-1,4.p2	AK149384|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr15_-_38770160_38770167	0.0155922	NKX2-1,4.p2	
mm9_v1_chr1_-_45559866_45559893	0.0155541	NKX2-1,4.p2	BC055077|Col5a2|12832|collagen, type V, alpha 2
mm9_v1_chr2_-_163450863_163450871	0.0153609	NKX2-1,4.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr7_-_30945790_30945794	0.0151106	NKX2-1,4.p2	AK033366|8430406M14Rik|399592|RIKEN cDNA 8430406M14 gene
mm9_v1_chr3_+_87924435_87924571	0.0150954	NKX2-1,4.p2	BC022774|Iqgap3|404710|IQ motif containing GTPase activating protein 3
mm9_v1_chr15_+_59162396_59162483	0.0149761	NKX2-1,4.p2	AK190780|Sqle|20775|squalene epoxidase	AK217980|Sqle|20775|squalene epoxidase
mm9_v1_chr10_-_60892540_60892651	0.0147682	NKX2-1,4.p2	
mm9_v1_chr2_-_60589953_60589966	0.0136937	NKX2-1,4.p2	AK143579|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	AK169352|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chrX_-_54646073_54646213	0.0118631	NKX2-1,4.p2	AK207357|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237846|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237847|Rbmx|19655|RNA binding motif protein, X chromosome	AK165006|Rbmx|19655|RNA binding motif protein, X chromosome	BC003710|Rbmx|19655|RNA binding motif protein, X chromosome	AK083899|Rbmx|19655|RNA binding motif protein, X chromosome	AK135164|Rbmx|19655|RNA binding motif protein, X chromosome	NM_001166623|Rbmx|19655|RNA binding motif protein, X chromosome	NM_011252|Rbmx|19655|RNA binding motif protein, X chromosome
mm9_v1_chr11_-_95137035_95137140	0.0116127	NKX2-1,4.p2	AK179739|Myst2|217127|MYST histone acetyltransferase 2	AK178421|Myst2|217127|MYST histone acetyltransferase 2	AK179227|Myst2|217127|MYST histone acetyltransferase 2	AK186092|Myst2|217127|MYST histone acetyltransferase 2	AK203203|Myst2|217127|MYST histone acetyltransferase 2	AK204177|Myst2|217127|MYST histone acetyltransferase 2	AK212451|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr15_-_72929166_72929248	0.00960774	NKX2-1,4.p2	AK148725|2310051F07Rik|108745|RIKEN cDNA 2310051F07 gene
mm9_v1_chr9_+_7792286_7792314	0.00823262	NKX2-1,4.p2	AK150630|Tmem123|71929|transmembrane protein 123
mm9_v1_chr11_+_95343299_95343327	0.00734941	NKX2-1,4.p2	
mm9_v1_chr2_-_120346171_120346284	0.00702204	NKX2-1,4.p2	AF060245|Zfp106|20402|zinc finger protein 106	AK029313|Zfp106|20402|zinc finger protein 106
mm9_v1_chr7_-_147268150_147268199	0.00689121	NKX2-1,4.p2	BC049663|Caly|68566|calcyon neuron-specific vesicular protein	NM_001190386|Caly|68566|calcyon neuron-specific vesicular protein
mm9_v1_chr10_+_79174337_79174350	0.00609475	NKX2-1,4.p2	AK210944|Bsg|12215|basigin
mm9_v1_chrX_-_91077290_91077385	0.00604649	NKX2-1,4.p2	CT010338|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3
mm9_v1_chr10_+_21712008_21712034	0.00593994	NKX2-1,4.p2	NM_001161849|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr15_+_25870456_25870763	0.00580447	NKX2-1,4.p2	AK167327|Fam134b|66270|family with sequence similarity 134, member B	AK146972|Fam134b|66270|family with sequence similarity 134, member B	BC019494|Fam134b|66270|family with sequence similarity 134, member B	NM_025459|Fam134b|66270|family with sequence similarity 134, member B	BC054415|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr17_-_25981402_25981452	0.00578288	NKX2-1,4.p2	AK142183|Rhot2|214952|ras homolog gene family, member T2	BC029777|Rhot2|214952|ras homolog gene family, member T2	BC034062|Rhot2|214952|ras homolog gene family, member T2
mm9_v1_chr7_-_139758954_139758967	0.00557313	NKX2-1,4.p2	AK187824|Oat|18242|ornithine aminotransferase
mm9_v1_chr14_+_44291397_44291537	0.00420786	NKX2-1,4.p2	AK214325|Rbmxrt|19656|RNA binding motif protein, X chromosome retrogene
mm9_v1_chr4_-_116312569_116312608	0.00367347	NKX2-1,4.p2	AK216201|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK200998|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK184360|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK187660|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK189553|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK196298|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr5_+_104494153_104494232	0.00358863	NKX2-1,4.p2	
mm9_v1_chr6_+_142723841_142723893	0.00322352	NKX2-1,4.p2	AK213220|Cmas|12764|cytidine monophospho-N-acetylneuraminic acid synthetase
mm9_v1_chr1_-_38109910_38110011	0.003028	NKX2-1,4.p2	AK003934|Rev1|56210|REV1 homolog (S. cerevisiae)
mm9_v1_chr9_+_77956998_77957048	0.00182027	NKX2-1,4.p2	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr4_+_126800830_126800906	0.000707592	NKX2-1,4.p2	BC060297|Zmym6|100177|zinc finger, MYM-type 6
