mm9_v1_chr1_-_180259336_180259529	5.51704	NKX2-3_NKX2-5.p2	AK049375|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK080656|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr3_+_101814059_101814199	4.98167	NKX2-3_NKX2-5.p2	S40532|Nhlh2|18072|nescient helix loop helix 2	AK031747|Nhlh2|18072|nescient helix loop helix 2	NM_178777|Nhlh2|18072|nescient helix loop helix 2	AK053837|Nhlh2|18072|nescient helix loop helix 2	AK053046|Nhlh2|18072|nescient helix loop helix 2	AK082728|Nhlh2|18072|nescient helix loop helix 2	AK084160|Nhlh2|18072|nescient helix loop helix 2	AK084308|Nhlh2|18072|nescient helix loop helix 2	BC058413|Nhlh2|18072|nescient helix loop helix 2
mm9_v1_chr1_+_6720153_6720223	4.77146	NKX2-3_NKX2-5.p2	AK133743|St18|240690|suppression of tumorigenicity 18	BC118528|St18|240690|suppression of tumorigenicity 18	AK137440|St18|240690|suppression of tumorigenicity 18	AK141513|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr3_+_17695743_17695745	4.59687	NKX2-3_NKX2-5.p2	AK046405|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene	AK032443|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene
mm9_v1_chr3_-_126701320_126701358	4.56758	NKX2-3_NKX2-5.p2	BC059251|Ank2|109676|ankyrin 2, brain	AK082352|Ank2|109676|ankyrin 2, brain
mm9_v1_chr9_+_96159123_96159160	4.0014	NKX2-3_NKX2-5.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr12_+_53800369_53800393	3.64776	NKX2-3_NKX2-5.p2	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr10_-_116786025_116786098	3.54217	NKX2-3_NKX2-5.p2	AK018657|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr1_+_19198994_19199078	3.50122	NKX2-3_NKX2-5.p2	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr2_+_73110010_73110058	3.21481	NKX2-3_NKX2-5.p2	BC139398|Sp9|381373|trans-acting transcription factor 9	BC139407|Sp9|381373|trans-acting transcription factor 9
mm9_v1_chr11_+_75578548_75578573	3.18164	NKX2-3_NKX2-5.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr3_+_133899454_133899460	3.09871	NKX2-3_NKX2-5.p2	BC065149|Cxxc4|319478|CXXC finger 4
mm9_v1_chr11_-_77707282_77707373	3.0641	NKX2-3_NKX2-5.p2	U94700|Pipox|19193|pipecolic acid oxidase	BC013525|Pipox|19193|pipecolic acid oxidase	AK135009|Pipox|19193|pipecolic acid oxidase	AK149488|Pipox|19193|pipecolic acid oxidase	AK008555|Pipox|19193|pipecolic acid oxidase	NM_008952|Pipox|19193|pipecolic acid oxidase
mm9_v1_chr15_+_92427539_92427556	2.91705	NKX2-3_NKX2-5.p2	NM_001164594|Pdzrn4|239618|PDZ domain containing RING finger 4	AK135524|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr1_+_45368443_45368526	2.81435	NKX2-3_NKX2-5.p2	AK220558|Col3a1|12825|collagen, type III, alpha 1	AK013329|Col3a1|12825|collagen, type III, alpha 1	AK041115|Col3a1|12825|collagen, type III, alpha 1	AK048546|Col3a1|12825|collagen, type III, alpha 1	AK157762|Col3a1|12825|collagen, type III, alpha 1	AK159763|Col3a1|12825|collagen, type III, alpha 1	AK159920|Col3a1|12825|collagen, type III, alpha 1	AK160048|Col3a1|12825|collagen, type III, alpha 1	AK160107|Col3a1|12825|collagen, type III, alpha 1	AK160818|Col3a1|12825|collagen, type III, alpha 1	AK147542|Col3a1|12825|collagen, type III, alpha 1	AK159985|Col3a1|12825|collagen, type III, alpha 1	AK029212|Col3a1|12825|collagen, type III, alpha 1	BC052398|Col3a1|12825|collagen, type III, alpha 1	BC043089|Col3a1|12825|collagen, type III, alpha 1	AK031544|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr5_-_92483744_92484066	2.7317	NKX2-3_NKX2-5.p2	AK169571|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK220349|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr14_-_118450875_118451546	2.66173	NKX2-3_NKX2-5.p2	EU554632|Dct|13190|dopachrome tautomerase	AK214181|Dct|13190|dopachrome tautomerase	AK214448|Dct|13190|dopachrome tautomerase	AK217087|Dct|13190|dopachrome tautomerase	AK212164|Dct|13190|dopachrome tautomerase	AK219002|Dct|13190|dopachrome tautomerase	BC082330|Dct|13190|dopachrome tautomerase	AK209892|Dct|13190|dopachrome tautomerase	AK191654|Dct|13190|dopachrome tautomerase	BC067064|Dct|13190|dopachrome tautomerase	X63349|Dct|13190|dopachrome tautomerase	AK033040|Dct|13190|dopachrome tautomerase	NM_010024|Dct|13190|dopachrome tautomerase	AK202452|Dct|13190|dopachrome tautomerase
mm9_v1_chr1_-_42749940_42749978	2.63771	NKX2-3_NKX2-5.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr1_+_19202046_19202134	2.63764	NKX2-3_NKX2-5.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr3_-_126701367_126701380	2.51011	NKX2-3_NKX2-5.p2	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr1_+_6720087_6720131	2.44781	NKX2-3_NKX2-5.p2	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr4_-_33010429_33010479	2.35907	NKX2-3_NKX2-5.p2	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr6_-_51413182_51413233	2.27021	NKX2-3_NKX2-5.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr1_+_19093102_19093153	2.26001	NKX2-3_NKX2-5.p2	AK132112|Tcfap2d|226896|transcription factor AP-2, delta	NM_153154|Tcfap2d|226896|transcription factor AP-2, delta	BC152324|Tcfap2d|226896|transcription factor AP-2, delta	BC152325|Tcfap2d|226896|transcription factor AP-2, delta
mm9_v1_chr5_-_89886732_89886828	2.00973	NKX2-3_NKX2-5.p2	M55413|Gc|14473|group specific component	AK010965|Gc|14473|group specific component	BC010762|Gc|14473|group specific component	BC051395|Gc|14473|group specific component	NM_008096|Gc|14473|group specific component
mm9_v1_chr2_-_44968508_44968606	1.99453	NKX2-3_NKX2-5.p2	AK158309|Zeb2|24136|zinc finger E-box binding homeobox 2	AK157561|Zeb2|24136|zinc finger E-box binding homeobox 2	BC060699|Zeb2|24136|zinc finger E-box binding homeobox 2	AK135557|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr7_-_26506741_26506878	1.95131	NKX2-3_NKX2-5.p2	
mm9_v1_chr17_+_17539832_17539856	1.92827	NKX2-3_NKX2-5.p2	AK017685|Lix1|66643|limb expression 1 homolog (chicken)	AK012220|Lix1|66643|limb expression 1 homolog (chicken)	BC052700|Lix1|66643|limb expression 1 homolog (chicken)	BC063057|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr1_-_55044032_55044295	1.90927	NKX2-3_NKX2-5.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr4_-_109960078_109960115	1.88579	NKX2-3_NKX2-5.p2	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr15_-_96861590_96861647	1.85216	NKX2-3_NKX2-5.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr15_-_24957039_24957112	1.8184	NKX2-3_NKX2-5.p2	AK033069|Gm2824|100040529|predicted gene 2824	AK083927|Gm2824|100040529|predicted gene 2824
mm9_v1_chr2_-_44968728_44968798	1.75579	NKX2-3_NKX2-5.p2	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr12_+_39510297_39510297	1.75396	NKX2-3_NKX2-5.p2	AK032224|Etv1|14009|ets variant gene 1	NM_001163154|Etv1|14009|ets variant gene 1
mm9_v1_chr11_+_93905443_93905464	1.71813	NKX2-3_NKX2-5.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr13_-_76081244_76081314	1.71223	NKX2-3_NKX2-5.p2	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr15_+_80629020_80629144	1.68518	NKX2-3_NKX2-5.p2	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr2_+_51893618_51893676	1.55919	NKX2-3_NKX2-5.p2	AK139985|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	NM_009398|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	U83903|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	BC021155|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6
mm9_v1_chr9_+_54758322_54758381	1.51113	NKX2-3_NKX2-5.p2	AK038058|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr1_+_66368409_66368422	1.49456	NKX2-3_NKX2-5.p2	AK079618|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr11_+_93905557_93905590	1.48201	NKX2-3_NKX2-5.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr5_-_122906470_122906515	1.45395	NKX2-3_NKX2-5.p2	AK081191|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr11_-_94154354_94154488	1.39431	NKX2-3_NKX2-5.p2	BC055921|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr15_-_103045710_103045798	1.39019	NKX2-3_NKX2-5.p2	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr10_-_20444654_20444883	1.37684	NKX2-3_NKX2-5.p2	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr19_+_39361574_39361600	1.36948	NKX2-3_NKX2-5.p2	NM_007815|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	BC019908|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	D17674|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29
mm9_v1_chr19_-_14672540_14672588	1.34809	NKX2-3_NKX2-5.p2	AK134989|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	BC086631|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr11_+_75578120_75578179	1.34589	NKX2-3_NKX2-5.p2	AK218111|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK180909|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr11_+_96212945_96213026	1.29532	NKX2-3_NKX2-5.p2	NM_134032|Hoxb2|103889|homeobox B2	BC138494|Hoxb2|103889|homeobox B2	BC138495|Hoxb2|103889|homeobox B2
mm9_v1_chr11_-_101828286_101828333	1.26683	NKX2-3_NKX2-5.p2	AF326740|Sost|74499|sclerostin	BC137832|Sost|74499|sclerostin	BC137833|Sost|74499|sclerostin	AK017295|Sost|74499|sclerostin	AK041382|Sost|74499|sclerostin	NM_024449|Sost|74499|sclerostin
mm9_v1_chr2_+_73109981_73109991	1.20769	NKX2-3_NKX2-5.p2	AY591908|Sp9|381373|trans-acting transcription factor 9	NM_001005343|Sp9|381373|trans-acting transcription factor 9	AK135123|Sp9|381373|trans-acting transcription factor 9
mm9_v1_chr3_-_86978431_86978668	1.20606	NKX2-3_NKX2-5.p2	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr13_+_42776161_42776182	1.17932	NKX2-3_NKX2-5.p2	AK047654|Phactr1|218194|phosphatase and actin regulator 1	AY993932|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr17_+_17539908_17539941	1.1734	NKX2-3_NKX2-5.p2	AF351204|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr6_-_87793898_87794088	1.15835	NKX2-3_NKX2-5.p2	AK207643|Cnbp|12785|cellular nucleic acid binding protein	AK188144|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr6_+_64679118_64679139	1.14578	NKX2-3_NKX2-5.p2	AK082354|Atoh1|11921|atonal homolog 1 (Drosophila)	BC010820|Atoh1|11921|atonal homolog 1 (Drosophila)	NM_007500|Atoh1|11921|atonal homolog 1 (Drosophila)
mm9_v1_chrM_+_5462_5556	1.13132	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_-_117252126_117252166	1.13082	NKX2-3_NKX2-5.p2	
mm9_v1_chr16_+_7069927_7069947	1.11295	NKX2-3_NKX2-5.p2	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr13_-_53568111_53568148	1.11294	NKX2-3_NKX2-5.p2	AK131974|Msx2|17702|homeobox, msh-like 2	BC141132|Msx2|17702|homeobox, msh-like 2	AK133846|Msx2|17702|homeobox, msh-like 2	NM_013601|Msx2|17702|homeobox, msh-like 2
mm9_v1_chr9_-_44610921_44611015	1.07273	NKX2-3_NKX2-5.p2	BC021608|Ttc36|192653|tetratricopeptide repeat domain 36	AK165811|Ttc36|192653|tetratricopeptide repeat domain 36	BC026825|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr2_+_27020999_27021026	1.06592	NKX2-3_NKX2-5.p2	BC141022|Dbh|13166|dopamine beta hydroxylase	BC171949|Dbh|13166|dopamine beta hydroxylase	AK132245|Dbh|13166|dopamine beta hydroxylase	NM_138942|Dbh|13166|dopamine beta hydroxylase
mm9_v1_chr8_-_49928495_49928639	1.04824	NKX2-3_NKX2-5.p2	AK013771|2900073C17Rik|73020|RIKEN cDNA 2900073C17 gene
mm9_v1_chr16_+_20692792_20692908	1.04311	NKX2-3_NKX2-5.p2	
mm9_v1_chr1_-_173957316_173957398	1.02493	NKX2-3_NKX2-5.p2	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr2_-_84490827_84490896	1.01315	NKX2-3_NKX2-5.p2	BC054544|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC043108|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK161790|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK164485|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK168453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085448|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085449|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085450|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_007615|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr14_-_111154292_111154370	1.01293	NKX2-3_NKX2-5.p2	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr11_-_119971500_119971623	1.01073	NKX2-3_NKX2-5.p2	AK195379|Slc38a10|72055|solute carrier family 38, member 10	AK176940|Slc38a10|72055|solute carrier family 38, member 10	AK182790|Slc38a10|72055|solute carrier family 38, member 10	BC055017|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr2_+_74707394_74707441	1.00532	NKX2-3_NKX2-5.p2	AK207939|Mtx2|53375|metaxin 2	AK212612|Mtx2|53375|metaxin 2	AK216047|Mtx2|53375|metaxin 2
mm9_v1_chr9_-_78326946_78326968	1.0036	NKX2-3_NKX2-5.p2	BC099609|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr7_-_77511242_77511282	0.994775	NKX2-3_NKX2-5.p2	AK012573|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK012322|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr3_+_90097269_90097314	0.993126	NKX2-3_NKX2-5.p2	AK041594|Gatad2b|229542|GATA zinc finger domain containing 2B
mm9_v1_chr3_+_159502646_159502709	0.982811	NKX2-3_NKX2-5.p2	BC075615|Wls|68151|wntless homolog (Drosophila)	NM_026582|Wls|68151|wntless homolog (Drosophila)	AK029053|Wls|68151|wntless homolog (Drosophila)	AK044810|Wls|68151|wntless homolog (Drosophila)	AK019886|Wls|68151|wntless homolog (Drosophila)	AK029104|Wls|68151|wntless homolog (Drosophila)	AK029315|Wls|68151|wntless homolog (Drosophila)	AK031444|Wls|68151|wntless homolog (Drosophila)	AK049842|Wls|68151|wntless homolog (Drosophila)	AK128912|Wls|68151|wntless homolog (Drosophila)	AK159207|Wls|68151|wntless homolog (Drosophila)	AK159977|Wls|68151|wntless homolog (Drosophila)	AK077407|Wls|68151|wntless homolog (Drosophila)
mm9_v1_chr2_+_34631438_34631582	0.97436	NKX2-3_NKX2-5.p2	AK218616|Hspa5|14828|heat shock protein 5	AK186478|Hspa5|14828|heat shock protein 5	AK192310|Hspa5|14828|heat shock protein 5
mm9_v1_chr13_-_23714425_23714427	0.973992	NKX2-3_NKX2-5.p2	BC089600|Hist1h1e|50709|histone cluster 1, H1e	NM_015787|Hist1h1e|50709|histone cluster 1, H1e
mm9_v1_chr5_-_122907002_122907003	0.972611	NKX2-3_NKX2-5.p2	AK134659|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr5_-_100391613_100391631	0.96717	NKX2-3_NKX2-5.p2	AK012230|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr6_-_99216494_99216530	0.962977	NKX2-3_NKX2-5.p2	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr16_-_63863905_63864000	0.957261	NKX2-3_NKX2-5.p2	BC138641|Epha3|13837|Eph receptor A3	BC138643|Epha3|13837|Eph receptor A3	BC145349|Epha3|13837|Eph receptor A3	AK132335|Epha3|13837|Eph receptor A3	BC060164|Epha3|13837|Eph receptor A3	M68513|Epha3|13837|Eph receptor A3	M68515|Epha3|13837|Eph receptor A3	AK084921|Epha3|13837|Eph receptor A3	AK041935|Epha3|13837|Eph receptor A3	AK045219|Epha3|13837|Eph receptor A3	NM_010140|Epha3|13837|Eph receptor A3	BC093483|Epha3|13837|Eph receptor A3	AK089119|Epha3|13837|Eph receptor A3
mm9_v1_chr4_-_109959366_109959438	0.94075	NKX2-3_NKX2-5.p2	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr5_-_100465086_100465197	0.934088	NKX2-3_NKX2-5.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr9_-_16182674_16182674	0.922823	NKX2-3_NKX2-5.p2	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr14_+_75855788_75855788	0.89564	NKX2-3_NKX2-5.p2	BC147762|Siah3|380918|seven in absentia homolog 3 (Drosophila)	BC147764|Siah3|380918|seven in absentia homolog 3 (Drosophila)	NM_001128093|Siah3|380918|seven in absentia homolog 3 (Drosophila)
mm9_v1_chr10_-_45189997_45190006	0.885189	NKX2-3_NKX2-5.p2	BC089037|Lin28b|380669|lin-28 homolog B (C. elegans)	BC085193|Lin28b|380669|lin-28 homolog B (C. elegans)	DQ127225|Lin28b|380669|lin-28 homolog B (C. elegans)	NM_001031772|Lin28b|380669|lin-28 homolog B (C. elegans)
mm9_v1_chr3_-_49561168_49561243	0.88266	NKX2-3_NKX2-5.p2	AF416735|Pcdh18|73173|protocadherin 18	AK173204|Pcdh18|73173|protocadherin 18	BC052198|Pcdh18|73173|protocadherin 18	AK036560|Pcdh18|73173|protocadherin 18	AK032820|Pcdh18|73173|protocadherin 18	NM_130448|Pcdh18|73173|protocadherin 18
mm9_v1_chr1_-_154472199_154472354	0.874811	NKX2-3_NKX2-5.p2	BC017678|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	NM_016846|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	U14103|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169109|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169180|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK144218|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1
mm9_v1_chr2_+_13501725_13501846	0.874383	NKX2-3_NKX2-5.p2	AK205443|Vim|22352|vimentin
mm9_v1_chr9_-_113563906_113564041	0.832666	NKX2-3_NKX2-5.p2	AK199870|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chrM_+_5398_5404	0.823659	NKX2-3_NKX2-5.p2	
mm9_v1_chrM_+_8606_8716	0.811313	NKX2-3_NKX2-5.p2	AK131579|COX3|17710|cytochrome c oxidase subunit III
mm9_v1_chr10_+_101621712_101621712	0.797556	NKX2-3_NKX2-5.p2	AK032009|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	NM_001162369|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm9_v1_chr6_-_127075853_127076093	0.794778	NKX2-3_NKX2-5.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr1_+_158769044_158769153	0.783563	NKX2-3_NKX2-5.p2	AK142319|Angptl1|72713|angiopoietin-like 1	AK012888|Angptl1|72713|angiopoietin-like 1	BC082563|Angptl1|72713|angiopoietin-like 1	NM_028333|Angptl1|72713|angiopoietin-like 1
mm9_v1_chr5_+_91197542_91197576	0.776992	NKX2-3_NKX2-5.p2	AF219112|Ppbp|57349|pro-platelet basic protein	AF278700|Ppbp|57349|pro-platelet basic protein	AK010273|Ppbp|57349|pro-platelet basic protein	AK157141|Ppbp|57349|pro-platelet basic protein	AK171720|Ppbp|57349|pro-platelet basic protein	NM_023785|Ppbp|57349|pro-platelet basic protein	AK157077|Ppbp|57349|pro-platelet basic protein	AB042817|Ppbp|57349|pro-platelet basic protein	AK158061|Ppbp|57349|pro-platelet basic protein	BC127043|Ppbp|57349|pro-platelet basic protein	BC127044|Ppbp|57349|pro-platelet basic protein
mm9_v1_chr2_+_34631124_34631274	0.773349	NKX2-3_NKX2-5.p2	M30779|Hspa5|14828|heat shock protein 5	M19351|Hspa5|14828|heat shock protein 5	AK198632|Hspa5|14828|heat shock protein 5	AK215158|Hspa5|14828|heat shock protein 5
mm9_v1_chr5_-_108304062_108304125	0.772869	NKX2-3_NKX2-5.p2	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr2_+_162760505_162760606	0.770068	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_+_56097078_56097350	0.769768	NKX2-3_NKX2-5.p2	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr6_-_41654290_41654346	0.76821	NKX2-3_NKX2-5.p2	AK028430|Kel|23925|Kell blood group	AF252870|Kel|23925|Kell blood group	NM_032540|Kel|23925|Kell blood group
mm9_v1_chr7_-_80686630_80686631	0.766315	NKX2-3_NKX2-5.p2	AK133596|Chd2|244059|chromodomain helicase DNA binding protein 2	AK040559|Chd2|244059|chromodomain helicase DNA binding protein 2	AK132638|Chd2|244059|chromodomain helicase DNA binding protein 2	AK136686|Chd2|244059|chromodomain helicase DNA binding protein 2	NM_001081345|Chd2|244059|chromodomain helicase DNA binding protein 2
mm9_v1_chr1_+_45368568_45368573	0.762061	NKX2-3_NKX2-5.p2	M18933|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr2_-_7317824_7317824	0.760813	NKX2-3_NKX2-5.p2	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr10_+_97110043_97110069	0.759532	NKX2-3_NKX2-5.p2	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr19_+_26822892_26822948	0.759377	NKX2-3_NKX2-5.p2	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr11_-_75114563_75114872	0.748393	NKX2-3_NKX2-5.p2	AK206421|Rpa1|68275|replication protein A1	AK206963|Rpa1|68275|replication protein A1	AK206973|Rpa1|68275|replication protein A1	AK214358|Rpa1|68275|replication protein A1	AK214387|Rpa1|68275|replication protein A1	AK216329|Rpa1|68275|replication protein A1	AK216964|Rpa1|68275|replication protein A1	AK217322|Rpa1|68275|replication protein A1	AK218731|Rpa1|68275|replication protein A1	AK218266|Rpa1|68275|replication protein A1	AK211282|Rpa1|68275|replication protein A1
mm9_v1_chr3_-_78949796_78949796	0.745914	NKX2-3_NKX2-5.p2	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr1_+_58052814_58052910	0.74405	NKX2-3_NKX2-5.p2	AK042448|Sgol2|68549|shugoshin-like 2 (S. pombe)	NM_199007|Sgol2|68549|shugoshin-like 2 (S. pombe)	BC023855|Sgol2|68549|shugoshin-like 2 (S. pombe)	AK079371|Sgol2|68549|shugoshin-like 2 (S. pombe)	BC052742|Sgol2|68549|shugoshin-like 2 (S. pombe)	AK017868|Sgol2|68549|shugoshin-like 2 (S. pombe)
mm9_v1_chr9_+_35024031_35024058	0.740263	NKX2-3_NKX2-5.p2	AK219602|Srpr|67398|signal recognition particle receptor ('docking protein')
mm9_v1_chr1_+_162917586_162917638	0.732787	NKX2-3_NKX2-5.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr6_+_15135505_15135508	0.731247	NKX2-3_NKX2-5.p2	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr19_-_14672472_14672537	0.719544	NKX2-3_NKX2-5.p2	AK017548|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	NM_011600|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chrM_+_9458_9465	0.717616	NKX2-3_NKX2-5.p2	AK139029|ND3|17718|NADH dehydrogenase subunit 3
mm9_v1_chr2_+_34631709_34631818	0.715841	NKX2-3_NKX2-5.p2	AK208906|Hspa5|14828|heat shock protein 5
mm9_v1_chr9_+_19426528_19426594	0.711144	NKX2-3_NKX2-5.p2	NM_172918|Zfp317|244713|zinc finger protein 317	AK051946|Zfp317|244713|zinc finger protein 317	AK045365|Zfp317|244713|zinc finger protein 317	BC059211|Zfp317|244713|zinc finger protein 317
mm9_v1_chr6_+_17699145_17699592	0.703646	NKX2-3_NKX2-5.p2	AK079107|St7|64213|suppression of tumorigenicity 7	AK132103|St7|64213|suppression of tumorigenicity 7	AK151550|St7|64213|suppression of tumorigenicity 7	NM_001083315|St7|64213|suppression of tumorigenicity 7	NM_022332|St7|64213|suppression of tumorigenicity 7	BC108418|St7|64213|suppression of tumorigenicity 7	AF234884|St7|64213|suppression of tumorigenicity 7	AF234885|St7|64213|suppression of tumorigenicity 7	AY007794|St7|64213|suppression of tumorigenicity 7	AY007795|St7|64213|suppression of tumorigenicity 7	AK036248|St7|64213|suppression of tumorigenicity 7	BC060630|St7|64213|suppression of tumorigenicity 7	BC051429|St7|64213|suppression of tumorigenicity 7	AY551821|St7|64213|suppression of tumorigenicity 7	AY551822|St7|64213|suppression of tumorigenicity 7	CT010245|St7|64213|suppression of tumorigenicity 7
mm9_v1_chr7_+_138712015_138712162	0.697266	NKX2-3_NKX2-5.p2	AK039977|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK079742|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr3_-_86352170_86352368	0.695656	NKX2-3_NKX2-5.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr1_+_162917640_162917674	0.68441	NKX2-3_NKX2-5.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chrX_+_155897136_155897153	0.681554	NKX2-3_NKX2-5.p2	AK005554|Mtap7d2|78283|MAP7 domain containing 2	AK030316|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr4_+_8533630_8533662	0.679979	NKX2-3_NKX2-5.p2	AK213817|Rab2a|59021|RAB2A, member RAS oncogene family	AK218701|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr2_+_35413977_35414092	0.67598	NKX2-3_NKX2-5.p2	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr11_-_69229653_69229709	0.675249	NKX2-3_NKX2-5.p2	BC075632|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr17_+_78907402_78907511	0.673864	NKX2-3_NKX2-5.p2	AK158117|Vit|74199|vitrin	NM_001197028|Vit|74199|vitrin	NM_028813|Vit|74199|vitrin	BC034120|Vit|74199|vitrin	AF454755|Vit|74199|vitrin	AK013193|Vit|74199|vitrin	AK051606|Vit|74199|vitrin
mm9_v1_chr6_-_3444484_3444497	0.662386	NKX2-3_NKX2-5.p2	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr18_+_38476622_38476661	0.657788	NKX2-3_NKX2-5.p2	
mm9_v1_chr14_+_65569108_65569182	0.657193	NKX2-3_NKX2-5.p2	AK035769|Ints9|210925|integrator complex subunit 9	AK038979|Ints9|210925|integrator complex subunit 9	AK136992|Ints9|210925|integrator complex subunit 9	AK150195|Ints9|210925|integrator complex subunit 9	BC055700|Ints9|210925|integrator complex subunit 9
mm9_v1_chr3_+_55265654_55265683	0.653623	NKX2-3_NKX2-5.p2	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr17_+_12571455_12571482	0.651728	NKX2-3_NKX2-5.p2	BC014773|Plg|18815|plasminogen	NM_008877|Plg|18815|plasminogen
mm9_v1_chr19_+_8876985_8877044	0.650575	NKX2-3_NKX2-5.p2	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr4_-_109959185_109959241	0.648869	NKX2-3_NKX2-5.p2	D31953|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK014133|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	DQ437511|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr4_+_57907032_57907040	0.648548	NKX2-3_NKX2-5.p2	AK086796|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr1_-_180264067_180264092	0.63905	NKX2-3_NKX2-5.p2	AK190289|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr4_-_43536296_43536373	0.638768	NKX2-3_NKX2-5.p2	X58381|Tpm2|22004|tropomyosin 2, beta	BC014809|Tpm2|22004|tropomyosin 2, beta	M87635|Tpm2|22004|tropomyosin 2, beta	X12650|Tpm2|22004|tropomyosin 2, beta	BC024358|Tpm2|22004|tropomyosin 2, beta	AK003186|Tpm2|22004|tropomyosin 2, beta	AK132162|Tpm2|22004|tropomyosin 2, beta
mm9_v1_chr1_+_84836413_84836453	0.636744	NKX2-3_NKX2-5.p2	NM_025386|Fbxo36|66153|F-box protein 36	AK008324|Fbxo36|66153|F-box protein 36	AK003856|Fbxo36|66153|F-box protein 36	BC049581|Fbxo36|66153|F-box protein 36	AK036072|Fbxo36|66153|F-box protein 36
mm9_v1_chr8_+_56040080_56040120	0.632251	NKX2-3_NKX2-5.p2	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr1_-_173957407_173957430	0.631917	NKX2-3_NKX2-5.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr7_-_11242322_11242322	0.631197	NKX2-3_NKX2-5.p2	NM_001110020|Gm6900|628596|predicted gene 6900
mm9_v1_chr1_-_128727208_128727208	0.631161	NKX2-3_NKX2-5.p2	NM_001081756|Nckap5|210356|NCK-associated protein 5	NM_176957|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr16_+_37580303_37580398	0.62744	NKX2-3_NKX2-5.p2	BC024369|Hgd|15233|homogentisate 1, 2-dioxygenase	BC037628|Hgd|15233|homogentisate 1, 2-dioxygenase	AK050193|Hgd|15233|homogentisate 1, 2-dioxygenase	BC044758|Hgd|15233|homogentisate 1, 2-dioxygenase	AK002584|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr8_+_4238862_4238907	0.619059	NKX2-3_NKX2-5.p2	AB005654|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK028772|Map2k7|26400|mitogen-activated protein kinase kinase 7	U74463|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr9_-_44611055_44611072	0.604996	NKX2-3_NKX2-5.p2	AK149384|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr8_+_91115856_91115922	0.599336	NKX2-3_NKX2-5.p2	AK192443|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK193874|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr11_+_94189303_94189504	0.595914	NKX2-3_NKX2-5.p2	NM_027799|Ankrd40|71452|ankyrin repeat domain 40	NM_146024|Ankrd40|71452|ankyrin repeat domain 40	BC023133|Ankrd40|71452|ankyrin repeat domain 40
mm9_v1_chr8_+_4238838_4238860	0.59484	NKX2-3_NKX2-5.p2	AK049267|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr19_-_12841737_12842025	0.594523	NKX2-3_NKX2-5.p2	AK018620|Zfp91|109910|zinc finger protein 91	AK012081|Zfp91|109910|zinc finger protein 91
mm9_v1_chr2_-_17970075_17970075	0.589871	NKX2-3_NKX2-5.p2	BC050860|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene	NM_028317|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene
mm9_v1_chr15_-_13103346_13103429	0.588823	NKX2-3_NKX2-5.p2	NM_007666|Cdh6|12563|cadherin 6	AK134611|Cdh6|12563|cadherin 6
mm9_v1_chr6_-_128380651_128380781	0.586836	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_+_87323855_87324094	0.585836	NKX2-3_NKX2-5.p2	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr1_-_168058009_168058054	0.583248	NKX2-3_NKX2-5.p2	BC117936|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK142263|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001033344|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001160049|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK048603|Dusp27|240892|dual specificity phosphatase 27 (putative)
mm9_v1_chr16_-_11137100_11137212	0.581388	NKX2-3_NKX2-5.p2	AK218593|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr1_-_165243608_165243611	0.581158	NKX2-3_NKX2-5.p2	AK089006|Prrx1|18933|paired related homeobox 1
mm9_v1_chr17_+_12571494_12571524	0.578821	NKX2-3_NKX2-5.p2	BC057186|Plg|18815|plasminogen	AK132254|Plg|18815|plasminogen	J04766|Plg|18815|plasminogen	AK040840|Plg|18815|plasminogen
mm9_v1_chr10_+_40657980_40658124	0.575889	NKX2-3_NKX2-5.p2	AK080786|Wasf1|83767|WASP family 1
mm9_v1_chr11_+_102254816_102254873	0.575838	NKX2-3_NKX2-5.p2	BC046319|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr10_+_28863801_28863929	0.573627	NKX2-3_NKX2-5.p2	NM_026138|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene	AK030682|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene
mm9_v1_chr17_+_34729159_34729288	0.573032	NKX2-3_NKX2-5.p2	AK159623|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC010287|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC062147|Pbx2|18515|pre B-cell leukemia transcription factor 2
mm9_v1_chr11_-_74491006_74491182	0.569916	NKX2-3_NKX2-5.p2	AK152284|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK164276|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr14_-_34195326_34195332	0.569394	NKX2-3_NKX2-5.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr18_+_35750406_35750586	0.569348	NKX2-3_NKX2-5.p2	AK139050|Matr3|17184|matrin 3	AK084822|Matr3|17184|matrin 3	AK148059|Matr3|17184|matrin 3
mm9_v1_chr9_+_96159666_96159703	0.56796	NKX2-3_NKX2-5.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr11_+_32646291_32646504	0.567762	NKX2-3_NKX2-5.p2	AK207541|Fbxw11|103583|F-box and WD-40 domain protein 11	AK219433|Fbxw11|103583|F-box and WD-40 domain protein 11	AK216067|Fbxw11|103583|F-box and WD-40 domain protein 11	AK210303|Fbxw11|103583|F-box and WD-40 domain protein 11	AK213659|Fbxw11|103583|F-box and WD-40 domain protein 11	AK215208|Fbxw11|103583|F-box and WD-40 domain protein 11
mm9_v1_chrX_+_156278399_156278494	0.562779	NKX2-3_NKX2-5.p2	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr1_-_37973274_37973337	0.560743	NKX2-3_NKX2-5.p2	BC147562|Lyg2|332427|lysozyme G-like 2	BC147567|Lyg2|332427|lysozyme G-like 2	AK132442|Lyg2|332427|lysozyme G-like 2	NM_001033427|Lyg2|332427|lysozyme G-like 2
mm9_v1_chrX_+_155897056_155897081	0.559343	NKX2-3_NKX2-5.p2	AK019929|Mtap7d2|78283|MAP7 domain containing 2	AK031868|Mtap7d2|78283|MAP7 domain containing 2	AK043342|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chrX_-_16488889_16488889	0.557285	NKX2-3_NKX2-5.p2	BC090623|Ndp|17986|Norrie disease (pseudoglioma) (human)	NM_010883|Ndp|17986|Norrie disease (pseudoglioma) (human)
mm9_v1_chr15_+_78860623_78860757	0.554482	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_-_122907269_122907331	0.553264	NKX2-3_NKX2-5.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr18_-_77285981_77286025	0.544454	NKX2-3_NKX2-5.p2	BC056963|Katnal2|71206|katanin p60 subunit A-like 2	AK014074|Katnal2|71206|katanin p60 subunit A-like 2	BC069977|Katnal2|71206|katanin p60 subunit A-like 2
mm9_v1_chrX_-_163645313_163645419	0.539711	NKX2-3_NKX2-5.p2	AK205579|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr3_+_68376319_68376428	0.532637	NKX2-3_NKX2-5.p2	BC060529|Schip1|30953|schwannomin interacting protein 1	AK021361|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr15_+_25682945_25682960	0.529144	NKX2-3_NKX2-5.p2	AK161653|Myo10|17909|myosin X
mm9_v1_chr6_+_83087016_83087103	0.523119	NKX2-3_NKX2-5.p2	NM_009106|Rtkn|20166|rhotekin	NM_133641|Rtkn|20166|rhotekin	U54638|Rtkn|20166|rhotekin	BC013820|Rtkn|20166|rhotekin
mm9_v1_chr10_-_116782524_116782604	0.517384	NKX2-3_NKX2-5.p2	AK086495|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr3_-_122241909_122241984	0.511666	NKX2-3_NKX2-5.p2	AK019185|Fnbp1l|214459|formin binding protein 1-like
mm9_v1_chr11_+_52202137_52202376	0.510006	NKX2-3_NKX2-5.p2	AK217498|Vdac1|22333|voltage-dependent anion channel 1	AK210208|Vdac1|22333|voltage-dependent anion channel 1	AK215454|Vdac1|22333|voltage-dependent anion channel 1	AK207573|Vdac1|22333|voltage-dependent anion channel 1
mm9_v1_chr7_+_119253816_119253899	0.509714	NKX2-3_NKX2-5.p2	AK015683|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chr5_-_135096236_135096321	0.508873	NKX2-3_NKX2-5.p2	AK202900|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197136|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192982|Eif4h|22384|eukaryotic translation initiation factor 4H	AK200162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195162|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191422|Eif4h|22384|eukaryotic translation initiation factor 4H	AK191093|Eif4h|22384|eukaryotic translation initiation factor 4H	AK192082|Eif4h|22384|eukaryotic translation initiation factor 4H	AK194320|Eif4h|22384|eukaryotic translation initiation factor 4H	AK195976|Eif4h|22384|eukaryotic translation initiation factor 4H	AK197414|Eif4h|22384|eukaryotic translation initiation factor 4H	AK202850|Eif4h|22384|eukaryotic translation initiation factor 4H	AK204156|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr4_+_6321713_6321979	0.508711	NKX2-3_NKX2-5.p2	AK213873|Sdcbp|53378|syndecan binding protein
mm9_v1_chrM_-_622_663	0.508203	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_+_162759398_162759483	0.508058	NKX2-3_NKX2-5.p2	AK185344|Srsf6|67996|serine/arginine-rich splicing factor 6	AK208133|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr15_+_3230053_3230123	0.503995	NKX2-3_NKX2-5.p2	
mm9_v1_chr8_-_95721654_95721683	0.499814	NKX2-3_NKX2-5.p2	AB023631|Ces1d|104158|carboxylesterase 1D	AF378751|Ces1d|104158|carboxylesterase 1D	AK078879|Ces1d|104158|carboxylesterase 1D
mm9_v1_chr2_+_13504271_13504305	0.496097	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_+_34659440_34659540	0.496042	NKX2-3_NKX2-5.p2	NM_145575|Cald1|109624|caldesmon 1	BC019435|Cald1|109624|caldesmon 1	AK014755|Cald1|109624|caldesmon 1	AK160593|Cald1|109624|caldesmon 1
mm9_v1_chr3_+_84781329_84781358	0.491937	NKX2-3_NKX2-5.p2	
mm9_v1_chr12_+_82049290_82049329	0.490123	NKX2-3_NKX2-5.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr3_-_82853711_82853734	0.48641	NKX2-3_NKX2-5.p2	BC031715|Fgb|110135|fibrinogen beta chain	NM_181849|Fgb|110135|fibrinogen beta chain	AK168626|Fgb|110135|fibrinogen beta chain	AK011920|Fgb|110135|fibrinogen beta chain	AK011118|Fgb|110135|fibrinogen beta chain	AK146960|Fgb|110135|fibrinogen beta chain
mm9_v1_chr1_-_151808361_151808434	0.486076	NKX2-3_NKX2-5.p2	M72394|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK144750|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK172121|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	BC003816|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	NM_008869|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)
mm9_v1_chr11_+_79845841_79845980	0.482215	NKX2-3_NKX2-5.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr6_+_30400873_30400960	0.476869	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_-_155999858_155999931	0.476827	NKX2-3_NKX2-5.p2	BC082607|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr14_+_79915429_79915530	0.467336	NKX2-3_NKX2-5.p2	AK132456|Elf1|13709|E74-like factor 1	U19617|Elf1|13709|E74-like factor 1	AK156098|Elf1|13709|E74-like factor 1	BC037743|Elf1|13709|E74-like factor 1	BC027532|Elf1|13709|E74-like factor 1	BC053914|Elf1|13709|E74-like factor 1
mm9_v1_chr16_-_16560240_16560303	0.465672	NKX2-3_NKX2-5.p2	BC145523|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402611|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139232|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402613|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139234|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK034504|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK134961|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr2_-_79969429_79969614	0.46515	NKX2-3_NKX2-5.p2	AK050004|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001159582|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK021279|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr1_+_166081951_166082088	0.458324	NKX2-3_NKX2-5.p2	AK137521|F5|14067|coagulation factor V	AK139240|F5|14067|coagulation factor V	AK137537|F5|14067|coagulation factor V	NM_007976|F5|14067|coagulation factor V	U52925|F5|14067|coagulation factor V
mm9_v1_chr6_-_119988624_119988681	0.457164	NKX2-3_NKX2-5.p2	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr15_+_80453912_80453951	0.45338	NKX2-3_NKX2-5.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr11_+_60351469_60351612	0.453297	NKX2-3_NKX2-5.p2	AK053695|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK049130|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK169700|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	BC052076|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK053700|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK162072|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK163294|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chrX_-_92853721_92853847	0.446935	NKX2-3_NKX2-5.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr2_+_34630247_34630274	0.445345	NKX2-3_NKX2-5.p2	AK198470|Hspa5|14828|heat shock protein 5	AK196010|Hspa5|14828|heat shock protein 5	AK206130|Hspa5|14828|heat shock protein 5	AK207319|Hspa5|14828|heat shock protein 5	AK207523|Hspa5|14828|heat shock protein 5	AK207843|Hspa5|14828|heat shock protein 5	AK216390|Hspa5|14828|heat shock protein 5	AK219238|Hspa5|14828|heat shock protein 5	AK214147|Hspa5|14828|heat shock protein 5
mm9_v1_chr8_-_24301206_24301672	0.442629	NKX2-3_NKX2-5.p2	AK178773|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK182757|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK204634|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AY489184|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK188390|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	BC031767|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm9_v1_chr2_+_78710638_78710757	0.442008	NKX2-3_NKX2-5.p2	AF003346|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr13_-_76081343_76081394	0.435052	NKX2-3_NKX2-5.p2	AK081381|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr2_-_84490666_84490763	0.433609	NKX2-3_NKX2-5.p2	NM_001085453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC046589|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr11_-_51414597_51414704	0.432422	NKX2-3_NKX2-5.p2	AK193201|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK196074|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK186800|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr3_+_66023884_66023904	0.431097	NKX2-3_NKX2-5.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr9_-_112090150_112090479	0.430555	NKX2-3_NKX2-5.p2	BC128376|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AF324451|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_033264|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK159004|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK002950|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	BC027107|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK160860|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177615|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177620|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_028755|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr11_-_69648350_69648356	0.427233	NKX2-3_NKX2-5.p2	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chr2_+_170336930_170336945	0.425008	NKX2-3_NKX2-5.p2	AK007940|Pfdn4|109054|prefoldin 4	BC048510|Pfdn4|109054|prefoldin 4
mm9_v1_chr14_-_71107810_71107841	0.42299	NKX2-3_NKX2-5.p2	AY550930|Xpo7|65246|exportin 7	AK143729|Xpo7|65246|exportin 7
mm9_v1_chr2_-_120862405_120862570	0.42093	NKX2-3_NKX2-5.p2	AK158219|Epb4.2|13828|erythrocyte protein band 4.2	AK158370|Epb4.2|13828|erythrocyte protein band 4.2	AK165288|Epb4.2|13828|erythrocyte protein band 4.2	AK172410|Epb4.2|13828|erythrocyte protein band 4.2	AK158247|Epb4.2|13828|erythrocyte protein band 4.2	BC053739|Epb4.2|13828|erythrocyte protein band 4.2	AK143841|Epb4.2|13828|erythrocyte protein band 4.2	L35933|Epb4.2|13828|erythrocyte protein band 4.2	BC066194|Epb4.2|13828|erythrocyte protein band 4.2	BC066806|Epb4.2|13828|erythrocyte protein band 4.2	NM_013513|Epb4.2|13828|erythrocyte protein band 4.2	U04055|Epb4.2|13828|erythrocyte protein band 4.2	AK133896|Epb4.2|13828|erythrocyte protein band 4.2	AK137484|Epb4.2|13828|erythrocyte protein band 4.2
mm9_v1_chr14_+_75576599_75576717	0.420567	NKX2-3_NKX2-5.p2	AK088202|Lcp1|18826|lymphocyte cytosolic protein 1	U82610|Lcp1|18826|lymphocyte cytosolic protein 1	AK169728|Lcp1|18826|lymphocyte cytosolic protein 1	AK171751|Lcp1|18826|lymphocyte cytosolic protein 1	AK030996|Lcp1|18826|lymphocyte cytosolic protein 1	AK169972|Lcp1|18826|lymphocyte cytosolic protein 1	AK167261|Lcp1|18826|lymphocyte cytosolic protein 1	AK153061|Lcp1|18826|lymphocyte cytosolic protein 1	AK153082|Lcp1|18826|lymphocyte cytosolic protein 1	AK151542|Lcp1|18826|lymphocyte cytosolic protein 1	AK089922|Lcp1|18826|lymphocyte cytosolic protein 1	AK151720|Lcp1|18826|lymphocyte cytosolic protein 1	AK152668|Lcp1|18826|lymphocyte cytosolic protein 1	AK152891|Lcp1|18826|lymphocyte cytosolic protein 1	AK152902|Lcp1|18826|lymphocyte cytosolic protein 1	AK168062|Lcp1|18826|lymphocyte cytosolic protein 1	AK153206|Lcp1|18826|lymphocyte cytosolic protein 1	AK169833|Lcp1|18826|lymphocyte cytosolic protein 1	AK030806|Lcp1|18826|lymphocyte cytosolic protein 1	AK151155|Lcp1|18826|lymphocyte cytosolic protein 1
mm9_v1_chr13_-_115248787_115248889	0.419812	NKX2-3_NKX2-5.p2	X83377|Fst|14313|follistatin	Z29532|Fst|14313|follistatin
mm9_v1_chr3_-_119486305_119486325	0.419563	NKX2-3_NKX2-5.p2	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr11_-_115560620_115560673	0.419223	NKX2-3_NKX2-5.p2	D85748|Grb2|14784|growth factor receptor bound protein 2	U07617|Grb2|14784|growth factor receptor bound protein 2	AK170845|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr1_+_40082070_40082114	0.411066	NKX2-3_NKX2-5.p2	AK159799|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chrX_+_162608411_162608448	0.40946	NKX2-3_NKX2-5.p2	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr10_-_124765435_124765590	0.403101	NKX2-3_NKX2-5.p2	BC117803|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC117804|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC126960|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC089606|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	AF058054|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	NM_011391|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm9_v1_chr11_+_87032504_87032509	0.400968	NKX2-3_NKX2-5.p2	AK004018|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr5_-_138613028_138613124	0.400928	NKX2-3_NKX2-5.p2	BC066024|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC023232|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC065164|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150059|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150066|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK154052|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK133091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK149913|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	D26091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	NM_008568|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK144980|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)
mm9_v1_chr13_+_43497279_43497424	0.39923	NKX2-3_NKX2-5.p2	AK140839|Nol7|70078|nucleolar protein 7
mm9_v1_chr3_-_57098670_57098869	0.399178	NKX2-3_NKX2-5.p2	L15429|Tm4sf1|17112|transmembrane 4 superfamily member 1	L15443|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK133556|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK077326|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK164718|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr6_+_137359231_137359310	0.398479	NKX2-3_NKX2-5.p2	NM_001164402|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_001164403|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37465|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37466|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr13_+_49678115_49678143	0.398372	NKX2-3_NKX2-5.p2	AB007848|Omd|27047|osteomodulin	NM_012050|Omd|27047|osteomodulin	BC095997|Omd|27047|osteomodulin
mm9_v1_chr2_-_79969095_79969127	0.398257	NKX2-3_NKX2-5.p2	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr6_+_5340417_5340708	0.397597	NKX2-3_NKX2-5.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr5_+_130292873_130292891	0.396561	NKX2-3_NKX2-5.p2	AK149757|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)
mm9_v1_chr17_+_29456133_29456178	0.396326	NKX2-3_NKX2-5.p2	AK004672|Pi16|74116|peptidase inhibitor 16	BC106088|Pi16|74116|peptidase inhibitor 16	AB046537|Pi16|74116|peptidase inhibitor 16	BC118026|Pi16|74116|peptidase inhibitor 16
mm9_v1_chr2_-_37225800_37225813	0.394037	NKX2-3_NKX2-5.p2	AK046886|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr11_-_86400309_86400486	0.39281	NKX2-3_NKX2-5.p2	AK154616|Tmem49|75909|transmembrane protein 49
mm9_v1_chr3_+_145784635_145784876	0.390914	NKX2-3_NKX2-5.p2	AK030819|Mcoln3|171166|mucolipin 3	AK035029|Mcoln3|171166|mucolipin 3	AK033008|Mcoln3|171166|mucolipin 3	AF475086|Mcoln3|171166|mucolipin 3	BC106856|Mcoln3|171166|mucolipin 3	BC106857|Mcoln3|171166|mucolipin 3	NM_134160|Mcoln3|171166|mucolipin 3	AY083531|Mcoln3|171166|mucolipin 3	AK191060|Mcoln3|171166|mucolipin 3	AK202150|Mcoln3|171166|mucolipin 3
mm9_v1_chr6_-_148894953_148895000	0.389387	NKX2-3_NKX2-5.p2	BC076599|Fam60a|56306|family with sequence similarity 60, member A	NM_019643|Fam60a|56306|family with sequence similarity 60, member A	AK166569|Fam60a|56306|family with sequence similarity 60, member A	AK145384|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr14_+_65568881_65568881	0.387672	NKX2-3_NKX2-5.p2	AK077634|Ints9|210925|integrator complex subunit 9	NM_153414|Ints9|210925|integrator complex subunit 9
mm9_v1_chr8_+_129587894_129588193	0.386679	NKX2-3_NKX2-5.p2	BC090616|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001122850|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_033620|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK052416|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053762|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053563|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK137690|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053576|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY026057|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC141187|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC145508|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr4_-_104548965_104549005	0.385374	NKX2-3_NKX2-5.p2	AB077296|C8a|230558|complement component 8, alpha polypeptide	AB077297|C8a|230558|complement component 8, alpha polypeptide	AB077298|C8a|230558|complement component 8, alpha polypeptide	BC027748|C8a|230558|complement component 8, alpha polypeptide	AK090245|C8a|230558|complement component 8, alpha polypeptide	AB077295|C8a|230558|complement component 8, alpha polypeptide	NM_146148|C8a|230558|complement component 8, alpha polypeptide
mm9_v1_chr11_-_106642684_106642809	0.383717	NKX2-3_NKX2-5.p2	AK149022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr1_-_180259089_180259120	0.382357	NKX2-3_NKX2-5.p2	AK049600|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr1_-_72330767_72330887	0.381842	NKX2-3_NKX2-5.p2	AF232011|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	BC013530|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AF242204|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK090327|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK135714|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK162100|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK010260|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	NM_023523|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase
mm9_v1_chr1_-_4350323_4350394	0.381086	NKX2-3_NKX2-5.p2	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr14_-_50403002_50403057	0.380906	NKX2-3_NKX2-5.p2	AK014402|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	BC023359|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028178|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK032093|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	NM_026142|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK028180|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK049427|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene	AK014563|3632451O06Rik|67419|RIKEN cDNA 3632451O06 gene
mm9_v1_chr9_+_120868808_120869094	0.380452	NKX2-3_NKX2-5.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr8_+_4238780_4238837	0.376988	NKX2-3_NKX2-5.p2	AK165184|Map2k7|26400|mitogen-activated protein kinase kinase 7	BC070467|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060945|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060946|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060947|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK031137|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr3_+_31801595_31801757	0.375696	NKX2-3_NKX2-5.p2	AK012400|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC046227|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC058957|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	NM_028231|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm9_v1_chr13_-_54652983_54653158	0.375228	NKX2-3_NKX2-5.p2	AK216925|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK206564|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK215484|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK216083|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK218676|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene
mm9_v1_chr7_-_149838254_149838314	0.374884	NKX2-3_NKX2-5.p2	AK146531|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr18_+_61747381_61747495	0.370864	NKX2-3_NKX2-5.p2	AK217508|Csnk1a1|93687|casein kinase 1, alpha 1	AK218260|Csnk1a1|93687|casein kinase 1, alpha 1	AK211333|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr19_+_55700193_55700329	0.367194	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_-_123182257_123182257	0.36569	NKX2-3_NKX2-5.p2	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr12_-_74147698_74147707	0.365416	NKX2-3_NKX2-5.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr1_+_9591550_9591585	0.363509	NKX2-3_NKX2-5.p2	BC066997|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chrX_-_91368713_91368747	0.362651	NKX2-3_NKX2-5.p2	L19714|Zfx|22764|zinc finger protein X-linked	AK145115|Zfx|22764|zinc finger protein X-linked	NM_001044386|Zfx|22764|zinc finger protein X-linked	NM_011768|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr6_-_136890189_136890259	0.361214	NKX2-3_NKX2-5.p2	BC031763|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	L07918|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK169733|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK002516|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	NM_007486|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta
mm9_v1_chr1_+_174051459_174051484	0.360556	NKX2-3_NKX2-5.p2	AK189379|Copa|12847|coatomer protein complex subunit alpha	AK191029|Copa|12847|coatomer protein complex subunit alpha	AK193412|Copa|12847|coatomer protein complex subunit alpha	AK199738|Copa|12847|coatomer protein complex subunit alpha	AK194620|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr6_+_141578016_141578059	0.360351	NKX2-3_NKX2-5.p2	AB031959|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2	NM_020495|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2
mm9_v1_chr13_-_102462584_102462601	0.358536	NKX2-3_NKX2-5.p2	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr3_+_145541951_145541971	0.358472	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_-_87793459_87793650	0.3553	NKX2-3_NKX2-5.p2	AK211658|Cnbp|12785|cellular nucleic acid binding protein	BC003805|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr5_-_136384495_136384514	0.352108	NKX2-3_NKX2-5.p2	
mm9_v1_chr1_-_195068455_195068557	0.351635	NKX2-3_NKX2-5.p2	DQ089001|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	S75207|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	AK149518|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	AK165212|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	NM_001044751|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1
mm9_v1_chr18_+_35776026_35776084	0.351625	NKX2-3_NKX2-5.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr16_-_11220854_11220973	0.350455	NKX2-3_NKX2-5.p2	AK218484|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr5_-_135096100_135096123	0.347274	NKX2-3_NKX2-5.p2	BC023227|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr1_-_165243777_165243829	0.346277	NKX2-3_NKX2-5.p2	NM_001025570|Prrx1|18933|paired related homeobox 1	NM_011127|Prrx1|18933|paired related homeobox 1	NM_175686|Prrx1|18933|paired related homeobox 1	U03873|Prrx1|18933|paired related homeobox 1	AK084387|Prrx1|18933|paired related homeobox 1	AK029347|Prrx1|18933|paired related homeobox 1
mm9_v1_chr11_+_20443168_20443285	0.343762	NKX2-3_NKX2-5.p2	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr5_-_123438517_123438541	0.340754	NKX2-3_NKX2-5.p2	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr6_-_92431385_92431385	0.340198	NKX2-3_NKX2-5.p2	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chrX_+_156146532_156146595	0.339277	NKX2-3_NKX2-5.p2	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr10_-_80170648_80170694	0.339209	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_62366262_62366409	0.336874	NKX2-3_NKX2-5.p2	M81745|Ubb|22187|ubiquitin B
mm9_v1_chr13_+_23787679_23787706	0.333725	NKX2-3_NKX2-5.p2	NM_010377|Hist1h1t|107970|histone cluster 1, H1t	BC119305|Hist1h1t|107970|histone cluster 1, H1t	BC119307|Hist1h1t|107970|histone cluster 1, H1t
mm9_v1_chr13_-_115248924_115248982	0.330073	NKX2-3_NKX2-5.p2	AK083556|Fst|14313|follistatin	NM_008046|Fst|14313|follistatin	BC144926|Fst|14313|follistatin	BC145945|Fst|14313|follistatin
mm9_v1_chr3_+_68376289_68376313	0.329349	NKX2-3_NKX2-5.p2	NM_013928|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr6_+_134874663_134874674	0.32796	NKX2-3_NKX2-5.p2	AK154276|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK169586|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr3_+_60432922_60432975	0.323006	NKX2-3_NKX2-5.p2	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr2_+_90858663_90858815	0.320487	NKX2-3_NKX2-5.p2	AK080832|Celf1|13046|CUGBP, Elav-like family member 1	AK160135|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr5_-_100392845_100392900	0.317544	NKX2-3_NKX2-5.p2	AK053251|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr6_-_122287014_122287032	0.315446	NKX2-3_NKX2-5.p2	U63386|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_001042623|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_007905|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr11_-_51414445_51414449	0.314936	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_+_154374639_154374777	0.312726	NKX2-3_NKX2-5.p2	AK005633|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	DQ080431|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	NM_029305|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147532|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147533|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC039797|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene
mm9_v1_chr7_-_29185621_29185738	0.312055	NKX2-3_NKX2-5.p2	
mm9_v1_chr14_-_80061976_80061977	0.31043	NKX2-3_NKX2-5.p2	NM_010701|Lect1|16840|leukocyte cell derived chemotaxin 1	U43509|Lect1|16840|leukocyte cell derived chemotaxin 1
mm9_v1_chr5_-_5265981_5266073	0.30952	NKX2-3_NKX2-5.p2	AK083269|Cdk14|18647|cyclin-dependent kinase 14	AK139386|Cdk14|18647|cyclin-dependent kinase 14	BC068134|Cdk14|18647|cyclin-dependent kinase 14	AK138437|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chrX_+_34666757_34666828	0.303783	NKX2-3_NKX2-5.p2	NM_025937|Nkap|67050|NFKB activating protein	BC026774|Nkap|67050|NFKB activating protein	AK011492|Nkap|67050|NFKB activating protein	AY388959|Nkap|67050|NFKB activating protein	AK038344|Nkap|67050|NFKB activating protein	AK076125|Nkap|67050|NFKB activating protein	AK012826|Nkap|67050|NFKB activating protein	AK089943|Nkap|67050|NFKB activating protein
mm9_v1_chr8_-_8666771_8666782	0.302757	NKX2-3_NKX2-5.p2	AK038412|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr12_-_58646914_58647013	0.300981	NKX2-3_NKX2-5.p2	X74936|Foxa1|15375|forkhead box A1	U44752|Foxa1|15375|forkhead box A1
mm9_v1_chr16_+_91677879_91677930	0.300702	NKX2-3_NKX2-5.p2	BC029990|Son|20658|Son DNA binding protein
mm9_v1_chr19_+_10271150_10271263	0.299592	NKX2-3_NKX2-5.p2	AK191356|Fads1|76267|fatty acid desaturase 1	AK199659|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr19_-_39537540_39537568	0.299074	NKX2-3_NKX2-5.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr11_+_69812965_69813148	0.297204	NKX2-3_NKX2-5.p2	Y17676|Phf23|78246|PHD finger protein 23
mm9_v1_chr6_-_90732001_90732074	0.292339	NKX2-3_NKX2-5.p2	AK053845|E130314K07Rik|320483|RIKEN cDNA E130314K07 gene	AK083777|E130314K07Rik|320483|RIKEN cDNA E130314K07 gene
mm9_v1_chrX_+_139997806_139997811	0.29217	NKX2-3_NKX2-5.p2	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr12_+_103366928_103366945	0.291343	NKX2-3_NKX2-5.p2	AK044368|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	AK044239|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm9_v1_chr4_-_106812064_106812078	0.289351	NKX2-3_NKX2-5.p2	AK186076|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene
mm9_v1_chr16_-_52268571_52268603	0.28721	NKX2-3_NKX2-5.p2	AK161090|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr7_-_53176582_53176892	0.287013	NKX2-3_NKX2-5.p2	BC001999|Emp3|13732|epithelial membrane protein 3	AF011750|Emp3|13732|epithelial membrane protein 3	U87948|Emp3|13732|epithelial membrane protein 3	NM_010129|Emp3|13732|epithelial membrane protein 3
mm9_v1_chr15_+_65703468_65703625	0.28686	NKX2-3_NKX2-5.p2	AK039483|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chr5_-_136849232_136849238	0.285978	NKX2-3_NKX2-5.p2	AF004225|Cux1|13047|cut-like homeobox 1
mm9_v1_chr7_+_99968402_99968500	0.285208	NKX2-3_NKX2-5.p2	AK017185|Rab30|75985|RAB30, member RAS oncogene family	AB232626|Rab30|75985|RAB30, member RAS oncogene family	AF399756|Rab30|75985|RAB30, member RAS oncogene family
mm9_v1_chr1_+_34364633_34364780	0.282998	NKX2-3_NKX2-5.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr11_+_87895626_87895848	0.278387	NKX2-3_NKX2-5.p2	AK079148|Vezf1|22344|vascular endothelial zinc finger 1	AK018086|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr15_+_36103785_36103843	0.278158	NKX2-3_NKX2-5.p2	AK003023|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK018914|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008136|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008287|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	BC028543|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	S63758|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K
mm9_v1_chr11_-_98862163_98862321	0.275839	NKX2-3_NKX2-5.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr11_-_121380601_121380655	0.27453	NKX2-3_NKX2-5.p2	AK037240|Zfp750|319530|zinc finger protein 750	AK028879|Zfp750|319530|zinc finger protein 750	AK030690|Zfp750|319530|zinc finger protein 750	BC080834|Zfp750|319530|zinc finger protein 750	AK037185|Zfp750|319530|zinc finger protein 750	AK076268|Zfp750|319530|zinc finger protein 750	AK140792|Zfp750|319530|zinc finger protein 750	NM_178763|Zfp750|319530|zinc finger protein 750
mm9_v1_chr9_-_79566271_79566499	0.273756	NKX2-3_NKX2-5.p2	U25652|Col12a1|12816|collagen, type XII, alpha 1	NM_007730|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr4_-_109125244_109125254	0.273066	NKX2-3_NKX2-5.p2	AK139182|Rnf11|29864|ring finger protein 11
mm9_v1_chr9_+_7792286_7792314	0.272492	NKX2-3_NKX2-5.p2	AK150630|Tmem123|71929|transmembrane protein 123
mm9_v1_chr17_+_3482314_3482460	0.272309	NKX2-3_NKX2-5.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr6_-_87931475_87931614	0.271296	NKX2-3_NKX2-5.p2	BC048709|H1fx|243529|H1 histone family, member X	NM_198622|H1fx|243529|H1 histone family, member X
mm9_v1_chr9_+_92502076_92502169	0.271274	NKX2-3_NKX2-5.p2	
mm9_v1_chr18_-_72367655_72367683	0.269084	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_+_162759135_162759161	0.267712	NKX2-3_NKX2-5.p2	AK212807|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr4_+_55093796_55093934	0.267657	NKX2-3_NKX2-5.p2	AK035041|Zfp462|242466|zinc finger protein 462
mm9_v1_chr2_-_59963586_59963753	0.265425	NKX2-3_NKX2-5.p2	BC150814|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK029386|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK134250|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK173180|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK030867|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr6_-_98292747_98292747	0.265287	NKX2-3_NKX2-5.p2	BC147266|Gm765|330390|predicted gene 765	BC147267|Gm765|330390|predicted gene 765	NM_001128092|Gm765|330390|predicted gene 765
mm9_v1_chr1_-_196957694_196957780	0.263878	NKX2-3_NKX2-5.p2	AK017702|Cr1l|12946|complement component (3b/4b) receptor 1-like	AK004825|Cr1l|12946|complement component (3b/4b) receptor 1-like	NM_013499|Cr1l|12946|complement component (3b/4b) receptor 1-like
mm9_v1_chr4_-_148500769_148500849	0.26176	NKX2-3_NKX2-5.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr2_+_109120894_109121025	0.260308	NKX2-3_NKX2-5.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr11_+_29618531_29618569	0.258289	NKX2-3_NKX2-5.p2	NM_024226|Rtn4|68585|reticulon 4	AY102283|Rtn4|68585|reticulon 4
mm9_v1_chr11_+_69727523_69727631	0.25525	NKX2-3_NKX2-5.p2	AF153696|Gps2|56310|G protein pathway suppressor 2
mm9_v1_chr7_-_29185514_29185554	0.25508	NKX2-3_NKX2-5.p2	AK133691|Samd4b|233033|sterile alpha motif domain containing 4B
mm9_v1_chr14_-_73762324_73762328	0.255017	NKX2-3_NKX2-5.p2	AK010248|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr1_+_193541845_193542002	0.252691	NKX2-3_NKX2-5.p2	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr2_+_152106052_152106158	0.25208	NKX2-3_NKX2-5.p2	AK042898|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr9_-_42062436_42062522	0.251319	NKX2-3_NKX2-5.p2	AK050439|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK165139|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr4_-_86873866_86873867	0.250545	NKX2-3_NKX2-5.p2	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr4_+_6312276_6312305	0.250362	NKX2-3_NKX2-5.p2	AK178827|Sdcbp|53378|syndecan binding protein	AK213782|Sdcbp|53378|syndecan binding protein
mm9_v1_chr13_+_16106279_16106315	0.249705	NKX2-3_NKX2-5.p2	NM_008380|Inhba|16323|inhibin beta-A	X69619|Inhba|16323|inhibin beta-A	BC053527|Inhba|16323|inhibin beta-A
mm9_v1_chrX_-_165015162_165015164	0.247663	NKX2-3_NKX2-5.p2	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr18_+_36452279_36452280	0.246763	NKX2-3_NKX2-5.p2	
mm9_v1_chrX_+_132424640_132424733	0.246461	NKX2-3_NKX2-5.p2	AK214737|Bhlhb9|70237|basic helix-loop-helix domain containing, class B9
mm9_v1_chr9_+_59523404_59523469	0.244367	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_+_68495345_68495448	0.242589	NKX2-3_NKX2-5.p2	M86672|Il12a|16159|interleukin 12a	NM_008351|Il12a|16159|interleukin 12a	BC116851|Il12a|16159|interleukin 12a	BC116855|Il12a|16159|interleukin 12a	AF128210|Il12a|16159|interleukin 12a	AF128211|Il12a|16159|interleukin 12a	AF128212|Il12a|16159|interleukin 12a	AF128213|Il12a|16159|interleukin 12a
mm9_v1_chr6_+_51494521_51494550	0.24116	NKX2-3_NKX2-5.p2	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr3_-_103546233_103546253	0.240917	NKX2-3_NKX2-5.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr4_+_95224197_95224229	0.240541	NKX2-3_NKX2-5.p2	NM_001113412|Fggy|75578|FGGY carbohydrate kinase domain containing	AK138439|Fggy|75578|FGGY carbohydrate kinase domain containing	AK082737|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr11_-_74991244_74991377	0.2388	NKX2-3_NKX2-5.p2	AK206282|Ovca2|246257|candidate tumor suppressor in ovarian cancer 2
mm9_v1_chr13_+_49639847_49640001	0.237585	NKX2-3_NKX2-5.p2	AK014504|Aspn|66695|asporin	AK021386|Aspn|66695|asporin	AK085920|Aspn|66695|asporin	BC034888|Aspn|66695|asporin	BC145904|Aspn|66695|asporin	BC145930|Aspn|66695|asporin
mm9_v1_chr9_-_79566528_79566565	0.236979	NKX2-3_NKX2-5.p2	AK028536|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr12_-_52849709_52849723	0.236684	NKX2-3_NKX2-5.p2	AK077185|Hectd1|207304|HECT domain containing 1
mm9_v1_chr5_-_123438493_123438509	0.23196	NKX2-3_NKX2-5.p2	AK087953|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chrX_+_162782484_162782852	0.231332	NKX2-3_NKX2-5.p2	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr12_+_86474651_86474814	0.230007	NKX2-3_NKX2-5.p2	AK218097|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK201762|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK202210|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK205589|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK206354|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK207941|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK209363|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK210896|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK219425|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK186759|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr2_+_70529064_70529358	0.229932	NKX2-3_NKX2-5.p2	AK205781|Gorasp2|70231|golgi reassembly stacking protein 2	AK188777|Gorasp2|70231|golgi reassembly stacking protein 2	AK208233|Gorasp2|70231|golgi reassembly stacking protein 2	AK209932|Gorasp2|70231|golgi reassembly stacking protein 2	AK205979|Gorasp2|70231|golgi reassembly stacking protein 2
mm9_v1_chr11_-_86399926_86400010	0.229668	NKX2-3_NKX2-5.p2	AK217200|Tmem49|75909|transmembrane protein 49
mm9_v1_chr1_+_159436875_159436945	0.229388	NKX2-3_NKX2-5.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr7_+_97357406_97357492	0.228178	NKX2-3_NKX2-5.p2	AK163129|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr3_+_69525922_69526018	0.227571	NKX2-3_NKX2-5.p2	AK145248|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK088667|Nmd3|97112|NMD3 homolog (S. cerevisiae)	BC003842|Nmd3|97112|NMD3 homolog (S. cerevisiae)	NM_133787|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK198106|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK166283|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK143289|Nmd3|97112|NMD3 homolog (S. cerevisiae)
mm9_v1_chr3_+_32335072_32335127	0.226338	NKX2-3_NKX2-5.p2	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr19_-_31839462_31839522	0.226273	NKX2-3_NKX2-5.p2	AK051624|Prkg1|19091|protein kinase, cGMP-dependent, type I	AK083991|Prkg1|19091|protein kinase, cGMP-dependent, type I	NM_001013833|Prkg1|19091|protein kinase, cGMP-dependent, type I
mm9_v1_chr8_-_87366138_87366160	0.224579	NKX2-3_NKX2-5.p2	AK199373|Calr|12317|calreticulin
mm9_v1_chr2_-_35972131_35972337	0.22434	NKX2-3_NKX2-5.p2	AK220096|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr8_-_87784612_87784676	0.223968	NKX2-3_NKX2-5.p2	AK219106|Vps35|65114|vacuolar protein sorting 35
mm9_v1_chr5_-_87355527_87355556	0.223871	NKX2-3_NKX2-5.p2	BC027200|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	NM_152811|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK004971|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK050435|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1
mm9_v1_chr15_-_93167238_93167272	0.222934	NKX2-3_NKX2-5.p2	BC002192|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr3_-_157689714_157689821	0.222713	NKX2-3_NKX2-5.p2	AK218604|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183815|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183987|Srsf11|69207|serine/arginine-rich splicing factor 11	AK212592|Srsf11|69207|serine/arginine-rich splicing factor 11	AK215844|Srsf11|69207|serine/arginine-rich splicing factor 11	AK216204|Srsf11|69207|serine/arginine-rich splicing factor 11	AK218039|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr3_+_133902563_133902608	0.222493	NKX2-3_NKX2-5.p2	BC082332|Cxxc4|319478|CXXC finger 4
mm9_v1_chr10_+_62849310_62849422	0.220803	NKX2-3_NKX2-5.p2	NM_013888|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AK032207|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AF132906|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC013501|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC071211|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12
mm9_v1_chr17_-_48572043_48572062	0.220527	NKX2-3_NKX2-5.p2	AF161699|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	NM_009694|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm9_v1_chr6_+_4484651_4484672	0.218937	NKX2-3_NKX2-5.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr7_-_53086135_53086313	0.217763	NKX2-3_NKX2-5.p2	BC008121|Grwd1|101612|glutamate-rich WD repeat containing 1	BC083143|Grwd1|101612|glutamate-rich WD repeat containing 1	BC028896|Grwd1|101612|glutamate-rich WD repeat containing 1	NM_153419|Grwd1|101612|glutamate-rich WD repeat containing 1	AK077611|Grwd1|101612|glutamate-rich WD repeat containing 1	AB001539|Grwd1|101612|glutamate-rich WD repeat containing 1
mm9_v1_chr4_-_136891931_136891995	0.216592	NKX2-3_NKX2-5.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr6_-_51416921_51416984	0.216562	NKX2-3_NKX2-5.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr5_+_104631633_104631713	0.216495	NKX2-3_NKX2-5.p2	AK132177|Dmp1|13406|dentin matrix protein 1	AK157973|Dmp1|13406|dentin matrix protein 1	NM_016779|Dmp1|13406|dentin matrix protein 1	U65020|Dmp1|13406|dentin matrix protein 1	BC113753|Dmp1|13406|dentin matrix protein 1
mm9_v1_chr12_-_4344470_4344503	0.215799	NKX2-3_NKX2-5.p2	U64606|Ncoa1|17977|nuclear receptor coactivator 1	BC068177|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr7_-_106987766_106987861	0.214366	NKX2-3_NKX2-5.p2	AK180141|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr2_+_174171943_174171964	0.213977	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_-_51799215_51799347	0.211913	NKX2-3_NKX2-5.p2	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr3_-_88214230_88214284	0.210691	NKX2-3_NKX2-5.p2	BC037139|Pmf1|67037|polyamine-modulated factor 1	BC049223|Pmf1|67037|polyamine-modulated factor 1	AK011174|Pmf1|67037|polyamine-modulated factor 1	AK012113|Pmf1|67037|polyamine-modulated factor 1	AK168200|Pmf1|67037|polyamine-modulated factor 1	NM_025928|Pmf1|67037|polyamine-modulated factor 1	AK013787|Pmf1|67037|polyamine-modulated factor 1	AF348509|Pmf1|67037|polyamine-modulated factor 1	AF348510|Pmf1|67037|polyamine-modulated factor 1	AK150603|Pmf1|67037|polyamine-modulated factor 1	AK078308|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr14_-_73762933_73762949	0.210635	NKX2-3_NKX2-5.p2	AK002796|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr11_-_115884712_115884736	0.20942	NKX2-3_NKX2-5.p2	AK213191|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr11_+_72264668_72264732	0.208711	NKX2-3_NKX2-5.p2	AK196252|Mybbp1a|18432|MYB binding protein (P160) 1a	AK190076|Mybbp1a|18432|MYB binding protein (P160) 1a	AK194300|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chrX_+_90900201_90900217	0.208693	NKX2-3_NKX2-5.p2	AK149304|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189950|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	NM_177546|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK053577|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr9_+_75623367_75623480	0.205187	NKX2-3_NKX2-5.p2	BC141283|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr2_-_32279522_32279542	0.2036	NKX2-3_NKX2-5.p2	BC022114|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	BC019978|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr6_+_29803751_29803890	0.203572	NKX2-3_NKX2-5.p2	AK172595|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr16_+_78931369_78931521	0.203405	NKX2-3_NKX2-5.p2	AF311699|Chodl|246048|chondrolectin	AK014255|Chodl|246048|chondrolectin	BC117071|Chodl|246048|chondrolectin	BC117073|Chodl|246048|chondrolectin	BC144738|Chodl|246048|chondrolectin
mm9_v1_chr2_-_163450863_163450871	0.202349	NKX2-3_NKX2-5.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr2_-_44972914_44972969	0.20196	NKX2-3_NKX2-5.p2	AJ535778|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr11_+_46254601_46254700	0.201333	NKX2-3_NKX2-5.p2	AK210054|Med7|66213|mediator complex subunit 7
mm9_v1_chr11_-_116711807_116712035	0.200977	NKX2-3_NKX2-5.p2	AK211203|Srsf2|20382|serine/arginine-rich splicing factor 2	AK207032|Srsf2|20382|serine/arginine-rich splicing factor 2	AK212169|Srsf2|20382|serine/arginine-rich splicing factor 2	AK220014|Srsf2|20382|serine/arginine-rich splicing factor 2	AF250134|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr9_+_106270889_106271052	0.200974	NKX2-3_NKX2-5.p2	AK140372|Dusp7|235584|dual specificity phosphatase 7	NM_153459|Dusp7|235584|dual specificity phosphatase 7
mm9_v1_chr10_-_36858426_36858478	0.200395	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_-_149320857_149320933	0.19787	NKX2-3_NKX2-5.p2	AK197397|Ubl3|24109|ubiquitin-like 3	AK204771|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr13_-_97419369_97419378	0.197322	NKX2-3_NKX2-5.p2	AK051107|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr11_+_29618696_29618843	0.196735	NKX2-3_NKX2-5.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr5_-_30460623_30460706	0.196472	NKX2-3_NKX2-5.p2	AK179416|Hadha|97212|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	AK188264|Hadha|97212|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	AK217494|Hadha|97212|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit
mm9_v1_chr14_+_32031041_32031060	0.196158	NKX2-3_NKX2-5.p2	AK129018|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AK137463|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AB127607|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	NM_001025379|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	BC115440|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
mm9_v1_chr5_-_144266956_144266980	0.19568	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_77908195_77908236	0.195634	NKX2-3_NKX2-5.p2	AK141119|BC017647|216971|cDNA sequence BC017647	AK079318|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr1_-_12980994_12981257	0.194222	NKX2-3_NKX2-5.p2	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr4_-_21694265_21694282	0.19394	NKX2-3_NKX2-5.p2	AK011611|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr2_+_83564607_83564841	0.1933	NKX2-3_NKX2-5.p2	AK140647|Itgav|16410|integrin alpha V	AK080357|Itgav|16410|integrin alpha V	AK020674|Itgav|16410|integrin alpha V	AK149984|Itgav|16410|integrin alpha V	U14135|Itgav|16410|integrin alpha V	BC021600|Itgav|16410|integrin alpha V	BC133682|Itgav|16410|integrin alpha V
mm9_v1_chr6_+_29325052_29325077	0.19303	NKX2-3_NKX2-5.p2	AF177023|Calu|12321|calumenin
mm9_v1_chr2_-_134380065_134380100	0.191789	NKX2-3_NKX2-5.p2	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr10_-_17635007_17635085	0.190935	NKX2-3_NKX2-5.p2	BC094026|Heca|380629|headcase homolog (Drosophila)	AK134782|Heca|380629|headcase homolog (Drosophila)
mm9_v1_chr18_+_69843588_69843609	0.190217	NKX2-3_NKX2-5.p2	AK017365|Tcf4|21413|transcription factor 4
mm9_v1_chr13_+_97408920_97408964	0.188749	NKX2-3_NKX2-5.p2	AK020301|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm9_v1_chr6_-_52176102_52176188	0.185148	NKX2-3_NKX2-5.p2	AB221551|Hoxa9|15405|homeobox A9	BC055059|Hoxa9|15405|homeobox A9
mm9_v1_chr13_+_94077988_94077988	0.18321	NKX2-3_NKX2-5.p2	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr6_+_145882641_145882808	0.182784	NKX2-3_NKX2-5.p2	AK162864|Sspn|16651|sarcospan	AK163041|Sspn|16651|sarcospan	AK164430|Sspn|16651|sarcospan	BC021484|Sspn|16651|sarcospan	NM_010656|Sspn|16651|sarcospan	U02487|Sspn|16651|sarcospan	AK148179|Sspn|16651|sarcospan	AK164529|Sspn|16651|sarcospan
mm9_v1_chr5_-_143666425_143666452	0.181162	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_75565381_75565439	0.181021	NKX2-3_NKX2-5.p2	AX775993|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK192964|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK202856|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr17_+_47873941_47874206	0.18082	NKX2-3_NKX2-5.p2	NM_001161722|Tcfeb|21425|transcription factor EB	AK078755|Tcfeb|21425|transcription factor EB
mm9_v1_chr4_-_21612991_21613109	0.179969	NKX2-3_NKX2-5.p2	AK149252|Prdm13|230025|PR domain containing 13	BC017632|Prdm13|230025|PR domain containing 13	NM_001080771|Prdm13|230025|PR domain containing 13
mm9_v1_chr1_-_142079842_142079987	0.179741	NKX2-3_NKX2-5.p2	M31979|Cfh|12628|complement component factor h	BC066092|Cfh|12628|complement component factor h	AK087707|Cfh|12628|complement component factor h	M12660|Cfh|12628|complement component factor h	AK052688|Cfh|12628|complement component factor h	NM_009888|Cfh|12628|complement component factor h
mm9_v1_chr11_+_105927362_105927420	0.179296	NKX2-3_NKX2-5.p2	AK034014|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK140143|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK147942|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK047078|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK010072|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK167963|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	BC029182|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	NM_027346|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I
mm9_v1_chr7_-_20284500_20284543	0.17897	NKX2-3_NKX2-5.p2	NM_009696|Apoe|11816|apolipoprotein E
mm9_v1_chr13_-_108516475_108516490	0.17853	NKX2-3_NKX2-5.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr11_-_116712559_116712636	0.17657	NKX2-3_NKX2-5.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr1_+_159388702_159388722	0.174392	NKX2-3_NKX2-5.p2	AK151310|BC026585|226527|cDNA sequence BC026585	BC026585|BC026585|226527|cDNA sequence BC026585	AK143913|BC026585|226527|cDNA sequence BC026585	NM_001033284|BC026585|226527|cDNA sequence BC026585
mm9_v1_chr7_-_125263314_125263384	0.173709	NKX2-3_NKX2-5.p2	AK004228|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK012904|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK005514|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr7_+_138703898_138703948	0.172902	NKX2-3_NKX2-5.p2	AK088534|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK138004|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	NM_009774|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	U67327|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	BC086790|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK190618|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr4_-_129055233_129055271	0.172237	NKX2-3_NKX2-5.p2	AK010736|Zbtb8a|73680|zinc finger and BTB domain containing 8a	NM_028603|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr11_-_49488485_49488495	0.171758	NKX2-3_NKX2-5.p2	AK039164|Cnot6|104625|CCR4-NOT transcription complex, subunit 6	AK169707|Cnot6|104625|CCR4-NOT transcription complex, subunit 6
mm9_v1_chr18_+_4920537_4920702	0.171292	NKX2-3_NKX2-5.p2	AK021019|Svil|225115|supervillin	AK041925|Svil|225115|supervillin	BC099602|Svil|225115|supervillin
mm9_v1_chr3_+_89586320_89586446	0.170545	NKX2-3_NKX2-5.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr8_-_8667108_8667134	0.170537	NKX2-3_NKX2-5.p2	AK034581|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chrX_+_138662479_138662479	0.170381	NKX2-3_NKX2-5.p2	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr7_+_73194834_73194897	0.168244	NKX2-3_NKX2-5.p2	AF008223|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6
mm9_v1_chr1_-_39608846_39608882	0.16671	NKX2-3_NKX2-5.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr18_-_39646734_39646900	0.166301	NKX2-3_NKX2-5.p2	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr15_-_50721552_50721725	0.165673	NKX2-3_NKX2-5.p2	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr15_-_76476688_76476767	0.165252	NKX2-3_NKX2-5.p2	AK028994|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chr9_+_44448105_44448130	0.165011	NKX2-3_NKX2-5.p2	AK003265|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr7_+_13615892_13615926	0.164997	NKX2-3_NKX2-5.p2	AK193916|Trim28|21849|tripartite motif-containing 28	AK194102|Trim28|21849|tripartite motif-containing 28	AK190398|Trim28|21849|tripartite motif-containing 28	AK177374|Trim28|21849|tripartite motif-containing 28	AK189444|Trim28|21849|tripartite motif-containing 28	AK190056|Trim28|21849|tripartite motif-containing 28	AK190280|Trim28|21849|tripartite motif-containing 28	AK192048|Trim28|21849|tripartite motif-containing 28	AK196455|Trim28|21849|tripartite motif-containing 28	AK196856|Trim28|21849|tripartite motif-containing 28
mm9_v1_chr8_-_87956606_87956658	0.163739	NKX2-3_NKX2-5.p2	AK007050|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK013123|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC040087|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr10_+_18127443_18127504	0.162811	NKX2-3_NKX2-5.p2	AK041760|Nhsl1|215819|NHS-like 1	AK017530|Nhsl1|215819|NHS-like 1	NM_173390|Nhsl1|215819|NHS-like 1	AK038892|Nhsl1|215819|NHS-like 1
mm9_v1_chr10_+_98486068_98486102	0.162474	NKX2-3_NKX2-5.p2	AK136761|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr11_+_115106897_115107042	0.162364	NKX2-3_NKX2-5.p2	
mm9_v1_chr3_-_107877121_107877254	0.161431	NKX2-3_NKX2-5.p2	AK196006|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr10_+_127452219_127452252	0.161322	NKX2-3_NKX2-5.p2	J04620|Prim1|19075|DNA primase, p49 subunit	BC089544|Prim1|19075|DNA primase, p49 subunit	AK089063|Prim1|19075|DNA primase, p49 subunit	AK088557|Prim1|19075|DNA primase, p49 subunit	AK160831|Prim1|19075|DNA primase, p49 subunit
mm9_v1_chr18_+_61085303_61085326	0.16099	NKX2-3_NKX2-5.p2	BC031745|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr2_-_10052196_10052339	0.160725	NKX2-3_NKX2-5.p2	AK133782|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2	BC034341|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2	X70392|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2	NM_010582|Itih2|16425|inter-alpha trypsin inhibitor, heavy chain 2
mm9_v1_chr19_-_4287408_4287579	0.160692	NKX2-3_NKX2-5.p2	AK153543|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr1_-_179178874_179178897	0.160556	NKX2-3_NKX2-5.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr16_+_88829238_88829254	0.160095	NKX2-3_NKX2-5.p2	AK132534|Krtap15|26560|keratin associated protein 15	NM_013713|Krtap15|26560|keratin associated protein 15	BC116219|Krtap15|26560|keratin associated protein 15
mm9_v1_chr3_-_88214554_88214644	0.159886	NKX2-3_NKX2-5.p2	
mm9_v1_chr17_-_46815418_46815568	0.158575	NKX2-3_NKX2-5.p2	
mm9_v1_chrX_-_102265380_102265463	0.157465	NKX2-3_NKX2-5.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr4_-_34754469_34754554	0.1569	NKX2-3_NKX2-5.p2	AB221605|Zfp292|30046|zinc finger protein 292
mm9_v1_chr2_+_174171525_174171529	0.156631	NKX2-3_NKX2-5.p2	AK187312|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK215851|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr17_+_47736273_47736367	0.156568	NKX2-3_NKX2-5.p2	AK191156|Ccnd3|12445|cyclin D3	AK196525|Ccnd3|12445|cyclin D3	AK196937|Ccnd3|12445|cyclin D3	AK201151|Ccnd3|12445|cyclin D3	AK208250|Ccnd3|12445|cyclin D3	AK209470|Ccnd3|12445|cyclin D3
mm9_v1_chr5_-_114292851_114293254	0.155828	NKX2-3_NKX2-5.p2	AK201602|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr17_+_64245366_64245425	0.15531	NKX2-3_NKX2-5.p2	NM_001037997|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	U76762|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AF286537|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr5_-_23012407_23012525	0.15508	NKX2-3_NKX2-5.p2	AK044922|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK201776|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr9_-_36540210_36540345	0.154951	NKX2-3_NKX2-5.p2	AK017358|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr18_+_57628139_57628180	0.154067	NKX2-3_NKX2-5.p2	NM_001134697|Ctxn3|629147|cortexin 3	AK042789|Ctxn3|629147|cortexin 3
mm9_v1_chr3_+_51299153_51299205	0.153776	NKX2-3_NKX2-5.p2	
mm9_v1_chr13_+_38296760_38296835	0.153772	NKX2-3_NKX2-5.p2	NM_026382|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	AK036713|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	AK012916|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	AK018315|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	AK087789|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	AK172155|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	AK007431|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	BC037073|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)	BC021443|Snrnp48|67797|small nuclear ribonucleoprotein 48 (U11/U12)
mm9_v1_chr11_-_5703677_5703735	0.153552	NKX2-3_NKX2-5.p2	BC010750|Pgam2|56012|phosphoglycerate mutase 2	AK146703|Pgam2|56012|phosphoglycerate mutase 2	AK169019|Pgam2|56012|phosphoglycerate mutase 2	AF029843|Pgam2|56012|phosphoglycerate mutase 2
mm9_v1_chr9_+_75623899_75624064	0.152536	NKX2-3_NKX2-5.p2	L41145|Bmp5|12160|bone morphogenetic protein 5	BC100751|Bmp5|12160|bone morphogenetic protein 5	BC100752|Bmp5|12160|bone morphogenetic protein 5	BC100753|Bmp5|12160|bone morphogenetic protein 5	BC100754|Bmp5|12160|bone morphogenetic protein 5	AK160412|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr13_-_77230519_77230547	0.152307	NKX2-3_NKX2-5.p2	BC083095|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr11_-_95137035_95137140	0.151766	NKX2-3_NKX2-5.p2	AK179739|Myst2|217127|MYST histone acetyltransferase 2	AK178421|Myst2|217127|MYST histone acetyltransferase 2	AK179227|Myst2|217127|MYST histone acetyltransferase 2	AK186092|Myst2|217127|MYST histone acetyltransferase 2	AK203203|Myst2|217127|MYST histone acetyltransferase 2	AK204177|Myst2|217127|MYST histone acetyltransferase 2	AK212451|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr1_+_129702056_129702170	0.151367	NKX2-3_NKX2-5.p2	AK033697|Ccnt2|72949|cyclin T2
mm9_v1_chr6_+_97879810_97879849	0.150322	NKX2-3_NKX2-5.p2	NM_001178049|Mitf|17342|microphthalmia-associated transcription factor	AK052895|Mitf|17342|microphthalmia-associated transcription factor	U19874|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr8_+_89240252_89240401	0.148641	NKX2-3_NKX2-5.p2	AK197630|Lonp2|66887|lon peptidase 2, peroxisomal
mm9_v1_chr6_+_17587046_17587119	0.146801	NKX2-3_NKX2-5.p2	AK150587|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	BC082589|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	NM_007604|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK007550|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AY544984|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK008204|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr2_+_162758440_162758589	0.144574	NKX2-3_NKX2-5.p2	AK051608|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr2_-_110203138_110203154	0.144408	NKX2-3_NKX2-5.p2	BC027250|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK003790|Fibin|67606|fin bud initiation factor homolog (zebrafish)	NM_026271|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr4_+_104830022_104830255	0.143855	NKX2-3_NKX2-5.p2	AK160056|Ppap2b|67916|phosphatidic acid phosphatase type 2B	AK076183|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr11_-_101323802_101323881	0.143314	NKX2-3_NKX2-5.p2	BC024586|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK181513|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK183725|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK199516|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr3_+_60276971_60277044	0.14317	NKX2-3_NKX2-5.p2	AK153827|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr18_-_43847367_43847426	0.143081	NKX2-3_NKX2-5.p2	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr1_+_196765079_196765114	0.14154	NKX2-3_NKX2-5.p2	AK044121|Cd34|12490|CD34 antigen	AK053874|Cd34|12490|CD34 antigen	AK051507|Cd34|12490|CD34 antigen	AK167329|Cd34|12490|CD34 antigen	AK167350|Cd34|12490|CD34 antigen	BC006607|Cd34|12490|CD34 antigen	AK089010|Cd34|12490|CD34 antigen
mm9_v1_chr8_+_71626352_71626466	0.141011	NKX2-3_NKX2-5.p2	AK187885|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK196120|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205248|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207339|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207413|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209086|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK210829|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr19_+_31943250_31943302	0.140557	NKX2-3_NKX2-5.p2	NM_001081074|A1cf|69865|APOBEC1 complementation factor	AY566862|A1cf|69865|APOBEC1 complementation factor	AY566863|A1cf|69865|APOBEC1 complementation factor	AY566864|A1cf|69865|APOBEC1 complementation factor	AK007970|A1cf|69865|APOBEC1 complementation factor	BC089622|A1cf|69865|APOBEC1 complementation factor
mm9_v1_chr2_+_80184132_80184149	0.140519	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_+_86984539_86984647	0.139177	NKX2-3_NKX2-5.p2	NM_008777|Pah|18478|phenylalanine hydroxylase
mm9_v1_chr10_-_126719287_126719357	0.13759	NKX2-3_NKX2-5.p2	AK034474|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr5_-_143666064_143666381	0.136733	NKX2-3_NKX2-5.p2	AK218630|Actb|11461|actin, beta	BC040513|Actb|11461|actin, beta	AB028847|Actb|11461|actin, beta	AK212447|Actb|11461|actin, beta	AY618569|Actb|11461|actin, beta	U89400|Actb|11461|actin, beta	AK187650|Actb|11461|actin, beta	AK201181|Actb|11461|actin, beta	AK204356|Actb|11461|actin, beta	AK208556|Actb|11461|actin, beta
mm9_v1_chr6_+_38542722_38542769	0.136606	NKX2-3_NKX2-5.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr7_+_138703863_138703894	0.135911	NKX2-3_NKX2-5.p2	BC025089|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr9_-_61918412_61918412	0.135845	NKX2-3_NKX2-5.p2	BC094587|Glce|93683|glucuronyl C5-epimerase	NM_033320|Glce|93683|glucuronyl C5-epimerase
mm9_v1_chr4_+_122731563_122731731	0.135727	NKX2-3_NKX2-5.p2	AK188355|Trit1|66966|tRNA isopentenyltransferase 1	AK219389|Trit1|66966|tRNA isopentenyltransferase 1	AK189511|Trit1|66966|tRNA isopentenyltransferase 1
mm9_v1_chr11_+_20125239_20125296	0.13547	NKX2-3_NKX2-5.p2	AK078671|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr12_+_50484907_50484951	0.133575	NKX2-3_NKX2-5.p2	BC064449|Foxg1|15228|forkhead box G1
mm9_v1_chrX_+_154137049_154137065	0.133288	NKX2-3_NKX2-5.p2	AJ245772|Smpx|66106|small muscle protein, X-linked	NM_025357|Smpx|66106|small muscle protein, X-linked	AK009857|Smpx|66106|small muscle protein, X-linked	AK010172|Smpx|66106|small muscle protein, X-linked	AY026524|Smpx|66106|small muscle protein, X-linked	AK003105|Smpx|66106|small muscle protein, X-linked	AF364070|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr11_-_17847399_17847495	0.132722	NKX2-3_NKX2-5.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr15_+_34044603_34044618	0.131701	NKX2-3_NKX2-5.p2	AK218970|Mtdh|67154|metadherin
mm9_v1_chr14_+_65885454_65885579	0.13152	NKX2-3_NKX2-5.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr9_+_75623153_75623180	0.130745	NKX2-3_NKX2-5.p2	AK033362|Bmp5|12160|bone morphogenetic protein 5	NM_007555|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr2_+_83564553_83564598	0.130639	NKX2-3_NKX2-5.p2	NM_008402|Itgav|16410|integrin alpha V
mm9_v1_chr4_-_132383213_132383408	0.129923	NKX2-3_NKX2-5.p2	AK198369|Ppp1r8|100336|protein phosphatase 1, regulatory (inhibitor) subunit 8
mm9_v1_chr18_-_9995729_9995838	0.129722	NKX2-3_NKX2-5.p2	AK206781|Usp14|59025|ubiquitin specific peptidase 14	AK209109|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr14_+_120830603_120830641	0.129442	NKX2-3_NKX2-5.p2	AK003316|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr1_-_180260325_180260384	0.128897	NKX2-3_NKX2-5.p2	
mm9_v1_chr9_+_44446796_44446798	0.128896	NKX2-3_NKX2-5.p2	AK156303|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr18_+_34932278_34932429	0.128766	NKX2-3_NKX2-5.p2	AK012724|Fam53c|66306|family with sequence similarity 53, member C	AK205811|Fam53c|66306|family with sequence similarity 53, member C
mm9_v1_chr2_-_109118405_109118446	0.128073	NKX2-3_NKX2-5.p2	BC115926|Mett5d1|76894|methyltransferase 5 domain containing 1	BC117549|Mett5d1|76894|methyltransferase 5 domain containing 1	BC106186|Mett5d1|76894|methyltransferase 5 domain containing 1	BC089533|Mett5d1|76894|methyltransferase 5 domain containing 1	AK002682|Mett5d1|76894|methyltransferase 5 domain containing 1	NM_029790|Mett5d1|76894|methyltransferase 5 domain containing 1
mm9_v1_chr9_-_26815760_26815835	0.127877	NKX2-3_NKX2-5.p2	AK210283|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr6_-_122560002_122560015	0.127809	NKX2-3_NKX2-5.p2	BC103565|Gdf3|14562|growth differentiation factor 3	BC101963|Gdf3|14562|growth differentiation factor 3	BC101964|Gdf3|14562|growth differentiation factor 3	BC101965|Gdf3|14562|growth differentiation factor 3	AK082877|Gdf3|14562|growth differentiation factor 3	AK146174|Gdf3|14562|growth differentiation factor 3	AK167962|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr18_+_35966147_35966251	0.12755	NKX2-3_NKX2-5.p2	AK075844|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr3_+_55265811_55265928	0.127178	NKX2-3_NKX2-5.p2	AF155821|Dclk1|13175|doublecortin-like kinase 1	AK032424|Dclk1|13175|doublecortin-like kinase 1	AK081200|Dclk1|13175|doublecortin-like kinase 1	AB073969|Dclk1|13175|doublecortin-like kinase 1	AK047716|Dclk1|13175|doublecortin-like kinase 1	AY968047|Dclk1|13175|doublecortin-like kinase 1	AY968048|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr5_+_138075155_138075194	0.127063	NKX2-3_NKX2-5.p2	AK192725|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4
mm9_v1_chr16_-_34263272_34263285	0.126785	NKX2-3_NKX2-5.p2	AK158544|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr17_+_70911084_70911126	0.126732	NKX2-3_NKX2-5.p2	NM_001128181|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK136926|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr7_-_106630812_106630831	0.126574	NKX2-3_NKX2-5.p2	U89414|Rps3|27050|ribosomal protein S3
mm9_v1_chrX_-_43809499_43809524	0.124484	NKX2-3_NKX2-5.p2	NM_001085510|Gm4987|245405|predicted gene 4987
mm9_v1_chr10_+_69388242_69388279	0.122967	NKX2-3_NKX2-5.p2	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr10_+_87322774_87322795	0.122826	NKX2-3_NKX2-5.p2	AK038119|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr10_-_86164623_86164759	0.121969	NKX2-3_NKX2-5.p2	AK031918|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160827|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215377|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215142|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210698|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210697|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK205935|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK216702|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK218021|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK186620|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chr6_+_37820779_37820898	0.121952	NKX2-3_NKX2-5.p2	AK080890|Trim24|21848|tripartite motif-containing 24	NM_145076|Trim24|21848|tripartite motif-containing 24	S78219|Trim24|21848|tripartite motif-containing 24	S78221|Trim24|21848|tripartite motif-containing 24	AK084870|Trim24|21848|tripartite motif-containing 24	BC056959|Trim24|21848|tripartite motif-containing 24
mm9_v1_chr19_+_56796861_56797043	0.12188	NKX2-3_NKX2-5.p2	NM_007419|Adrb1|11554|adrenergic receptor, beta 1	AK018378|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr10_-_84590718_84590771	0.121179	NKX2-3_NKX2-5.p2	BC046619|Mterfd3|74238|MTERF domain containing 3	AK047778|Mterfd3|74238|MTERF domain containing 3	AK039816|Mterfd3|74238|MTERF domain containing 3	NM_028832|Mterfd3|74238|MTERF domain containing 3
mm9_v1_chr12_+_90191833_90191842	0.120587	NKX2-3_NKX2-5.p2	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chr14_-_32390502_32390568	0.120574	NKX2-3_NKX2-5.p2	BC107386|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	BC107387|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AK134212|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	NM_009937|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm9_v1_chr9_-_107516538_107516684	0.119723	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_+_104868321_104868417	0.118486	NKX2-3_NKX2-5.p2	BC014284|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr7_-_38804503_38804582	0.117577	NKX2-3_NKX2-5.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr1_+_196765124_196765159	0.117123	NKX2-3_NKX2-5.p2	S69293|Cd34|12490|CD34 antigen	BC066820|Cd34|12490|CD34 antigen	AK158452|Cd34|12490|CD34 antigen	S69299|Cd34|12490|CD34 antigen	S69301|Cd34|12490|CD34 antigen
mm9_v1_chr3_+_137004089_137004128	0.116432	NKX2-3_NKX2-5.p2	AB034693|Emcn|59308|endomucin	AF060883|Emcn|59308|endomucin	AK164422|Emcn|59308|endomucin
mm9_v1_chr16_-_56690646_56690662	0.116142	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_+_125365789_125365870	0.115253	NKX2-3_NKX2-5.p2	BC096550|Zfp664|269704|zinc finger protein 664
mm9_v1_chr3_+_88128944_88129011	0.114229	NKX2-3_NKX2-5.p2	AB027142|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	NM_020003|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK075614|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK150794|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK154340|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK007803|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK171042|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK171142|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK181848|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK189139|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK002728|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK080538|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK170696|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK172606|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	BC021547|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AB027141|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene	AK160793|0610031J06Rik|56700|RIKEN cDNA 0610031J06 gene
mm9_v1_chr12_+_80398268_80398337	0.113284	NKX2-3_NKX2-5.p2	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chr1_+_40082201_40082235	0.113012	NKX2-3_NKX2-5.p2	AK020498|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK167747|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK004047|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr10_+_4978808_4978917	0.112972	NKX2-3_NKX2-5.p2	AK148504|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr15_-_101573522_101573539	0.11295	NKX2-3_NKX2-5.p2	BC125346|Krt71|56735|keratin 71	BC125348|Krt71|56735|keratin 71	AB033744|Krt71|56735|keratin 71	AB100413|Krt71|56735|keratin 71	AY033497|Krt71|56735|keratin 71	NM_019956|Krt71|56735|keratin 71	AK003610|Krt71|56735|keratin 71	AK003704|Krt71|56735|keratin 71
mm9_v1_chr10_+_79606611_79606693	0.112939	NKX2-3_NKX2-5.p2	AK186963|Atp5d|66043|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
mm9_v1_chrX_+_53708015_53708070	0.112786	NKX2-3_NKX2-5.p2	NM_172779|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK031945|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	BC051161|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK083942|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK160627|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm9_v1_chrX_+_50373295_50373321	0.112334	NKX2-3_NKX2-5.p2	AY423851|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase
mm9_v1_chr1_-_132950390_132950506	0.111498	NKX2-3_NKX2-5.p2	AK201240|Mapkapk2|17164|MAP kinase-activated protein kinase 2
mm9_v1_chr17_+_17539635_17539669	0.111234	NKX2-3_NKX2-5.p2	BC049574|Lix1|66643|limb expression 1 homolog (chicken)	NM_025681|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr9_-_105372402_105372478	0.111082	NKX2-3_NKX2-5.p2	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr10_-_80170504_80170531	0.110344	NKX2-3_NKX2-5.p2	AK205331|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr3_-_58689068_58689133	0.109111	NKX2-3_NKX2-5.p2	AK041623|Clrn1|229320|clarin 1	AK042523|Clrn1|229320|clarin 1	BC132254|Clrn1|229320|clarin 1	BC132256|Clrn1|229320|clarin 1	BC145202|Clrn1|229320|clarin 1	AF495718|Clrn1|229320|clarin 1	AF495719|Clrn1|229320|clarin 1	AF495720|Clrn1|229320|clarin 1	NM_153384|Clrn1|229320|clarin 1	NM_153385|Clrn1|229320|clarin 1	NM_153386|Clrn1|229320|clarin 1
mm9_v1_chr13_+_49703402_49703439	0.108879	NKX2-3_NKX2-5.p2	AK028300|Ogn|18295|osteoglycin	AK160760|Ogn|18295|osteoglycin	AK053650|Ogn|18295|osteoglycin	NM_008760|Ogn|18295|osteoglycin
mm9_v1_chr9_-_62644026_62644272	0.106597	NKX2-3_NKX2-5.p2	AK078303|Fem1b|14155|feminization 1 homolog b (C. elegans)	AK160393|Fem1b|14155|feminization 1 homolog b (C. elegans)
mm9_v1_chr13_+_24904944_24904959	0.10648	NKX2-3_NKX2-5.p2	AK088171|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr4_+_140522412_140522429	0.104699	NKX2-3_NKX2-5.p2	DQ403000|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
mm9_v1_chr15_-_79359998_79360114	0.104479	NKX2-3_NKX2-5.p2	AK079294|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK011338|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK079442|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK164451|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr5_+_117825813_117825951	0.104465	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_-_87937335_87937390	0.10438	NKX2-3_NKX2-5.p2	AK080245|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr12_-_74147683_74147691	0.104255	NKX2-3_NKX2-5.p2	BC023304|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr10_+_59747208_59747231	0.103872	NKX2-3_NKX2-5.p2	AK149785|Psap|19156|prosaposin	NM_001146124|Psap|19156|prosaposin
mm9_v1_chr2_-_77357674_77357722	0.103009	NKX2-3_NKX2-5.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr18_+_63158808_63158850	0.102752	NKX2-3_NKX2-5.p2	AK217399|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr3_+_41368846_41368849	0.102454	NKX2-3_NKX2-5.p2	AK129445|Phf17|269424|PHD finger protein 17
mm9_v1_chr5_+_116010796_116010949	0.101816	NKX2-3_NKX2-5.p2	BC030189|Rplp0|11837|ribosomal protein, large, P0	AK193996|Rplp0|11837|ribosomal protein, large, P0	AK205179|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr8_+_131256428_131256477	0.100462	NKX2-3_NKX2-5.p2	AK008343|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr10_-_114622068_114622080	0.100113	NKX2-3_NKX2-5.p2	BC120514|Tph2|216343|tryptophan hydroxylase 2	BC125430|Tph2|216343|tryptophan hydroxylase 2	AY090565|Tph2|216343|tryptophan hydroxylase 2	NM_173391|Tph2|216343|tryptophan hydroxylase 2
mm9_v1_chr4_-_147284260_147284322	0.0998264	NKX2-3_NKX2-5.p2	AK185340|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm9_v1_chr6_+_48597232_48597434	0.097465	NKX2-3_NKX2-5.p2	AK134199|Gimap8|243374|GTPase, IMAP family member 8	NM_001077410|Gimap8|243374|GTPase, IMAP family member 8	AB178029|Gimap8|243374|GTPase, IMAP family member 8	AK155985|Gimap8|243374|GTPase, IMAP family member 8	NM_212486|Gimap8|243374|GTPase, IMAP family member 8	BC137943|Gimap8|243374|GTPase, IMAP family member 8	BC137944|Gimap8|243374|GTPase, IMAP family member 8	AJ617674|Gimap8|243374|GTPase, IMAP family member 8
mm9_v1_chr1_+_74314377_74314414	0.0971661	NKX2-3_NKX2-5.p2	AK213157|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr19_-_14671832_14671910	0.0968275	NKX2-3_NKX2-5.p2	AF229633|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr3_+_54165028_54165059	0.0967425	NKX2-3_NKX2-5.p2	NM_001198765|Postn|50706|periostin, osteoblast specific factor	NM_001198766|Postn|50706|periostin, osteoblast specific factor	NM_015784|Postn|50706|periostin, osteoblast specific factor	AK030756|Postn|50706|periostin, osteoblast specific factor	AK154049|Postn|50706|periostin, osteoblast specific factor	D13664|Postn|50706|periostin, osteoblast specific factor	BC007141|Postn|50706|periostin, osteoblast specific factor	AY651928|Postn|50706|periostin, osteoblast specific factor	BC031449|Postn|50706|periostin, osteoblast specific factor
mm9_v1_chr16_-_57754816_57754849	0.0963137	NKX2-3_NKX2-5.p2	BC011061|Col8a1|12837|collagen, type VIII, alpha 1	BC058281|Col8a1|12837|collagen, type VIII, alpha 1	AK159542|Col8a1|12837|collagen, type VIII, alpha 1	AK029203|Col8a1|12837|collagen, type VIII, alpha 1	AK018742|Col8a1|12837|collagen, type VIII, alpha 1	AK032048|Col8a1|12837|collagen, type VIII, alpha 1	AK046370|Col8a1|12837|collagen, type VIII, alpha 1	NM_007739|Col8a1|12837|collagen, type VIII, alpha 1
mm9_v1_chr14_+_55308846_55308961	0.096296	NKX2-3_NKX2-5.p2	
mm9_v1_chrX_+_20276404_20276539	0.0960087	NKX2-3_NKX2-5.p2	AK177013|Cdk16|18555|cyclin-dependent kinase 16	AK212751|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr12_+_75028976_75029036	0.0950838	NKX2-3_NKX2-5.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr13_-_104623606_104623708	0.0932217	NKX2-3_NKX2-5.p2	BC005691|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr10_+_53057491_53057558	0.0932032	NKX2-3_NKX2-5.p2	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr8_+_123012667_123012765	0.0930283	NKX2-3_NKX2-5.p2	BC043094|Gse1|382034|genetic suppressor element 1	NM_198671|Gse1|382034|genetic suppressor element 1
mm9_v1_chr13_-_38615229_38615324	0.0925212	NKX2-3_NKX2-5.p2	BC036155|Txndc5|105245|thioredoxin domain containing 5	AK224911|Txndc5|105245|thioredoxin domain containing 5
mm9_v1_chr13_+_23898861_23898926	0.0923968	NKX2-3_NKX2-5.p2	AK050277|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	AK040717|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	NM_144836|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	AK050184|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2
mm9_v1_chr12_-_13227172_13227259	0.0923781	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_-_24993103_24993167	0.0920748	NKX2-3_NKX2-5.p2	BC005456|Zfp111|56707|zinc finger protein 111	AK135436|Zfp111|56707|zinc finger protein 111	NM_019940|Zfp111|56707|zinc finger protein 111
mm9_v1_chr11_+_67779990_67779991	0.0910687	NKX2-3_NKX2-5.p2	AK018716|Stx8|55943|syntaxin 8
mm9_v1_chr15_-_72929166_72929248	0.0909243	NKX2-3_NKX2-5.p2	AK148725|2310051F07Rik|108745|RIKEN cDNA 2310051F07 gene
mm9_v1_chr16_+_45224449_45224465	0.0902481	NKX2-3_NKX2-5.p2	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr7_-_109907908_109907984	0.0897863	NKX2-3_NKX2-5.p2	AK014616|Olfr78|170639|olfactory receptor 78	AK028467|Olfr78|170639|olfactory receptor 78	AK036356|Olfr78|170639|olfactory receptor 78	NM_001168503|Olfr78|170639|olfactory receptor 78	NM_130866|Olfr78|170639|olfactory receptor 78
mm9_v1_chr6_-_71773747_71773805	0.0895437	NKX2-3_NKX2-5.p2	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr12_-_52847096_52847142	0.0894726	NKX2-3_NKX2-5.p2	BC010205|Hectd1|207304|HECT domain containing 1
mm9_v1_chr10_+_80645192_80645203	0.0878353	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_-_17355533_17355611	0.0877106	NKX2-3_NKX2-5.p2	AK172162|Cd36|12491|CD36 antigen	BC010262|Cd36|12491|CD36 antigen	AK150648|Cd36|12491|CD36 antigen	NM_001159556|Cd36|12491|CD36 antigen	NM_001159557|Cd36|12491|CD36 antigen
mm9_v1_chr14_-_19164241_19164397	0.0876389	NKX2-3_NKX2-5.p2	BC003781|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK148266|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	X92665|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK090177|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	NM_009455|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)
mm9_v1_chr3_+_121160714_121160815	0.0873719	NKX2-3_NKX2-5.p2	AK181356|Cnn3|71994|calponin 3, acidic
mm9_v1_chr12_+_99506844_99506881	0.0869151	NKX2-3_NKX2-5.p2	AK134113|Gpr65|14744|G-protein coupled receptor 65	NM_008152|Gpr65|14744|G-protein coupled receptor 65	U39827|Gpr65|14744|G-protein coupled receptor 65	AK142853|Gpr65|14744|G-protein coupled receptor 65
mm9_v1_chr5_+_90947970_90948068	0.0868268	NKX2-3_NKX2-5.p2	AK143987|Afm|280662|afamin	BC100597|Afm|280662|afamin	NM_145146|Afm|280662|afamin	BC026681|Afm|280662|afamin
mm9_v1_chr6_+_4490515_4490528	0.0861073	NKX2-3_NKX2-5.p2	AK003150|Col1a2|12843|collagen, type I, alpha 2	BC023203|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr5_-_143665305_143665346	0.0860087	NKX2-3_NKX2-5.p2	AK151514|Actb|11461|actin, beta
mm9_v1_chr3_+_132772586_132772695	0.0856616	NKX2-3_NKX2-5.p2	AK015941|Ints12|71793|integrator complex subunit 12
mm9_v1_chr4_-_142718290_142718420	0.085503	NKX2-3_NKX2-5.p2	AK136099|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr6_+_33922645_33922791	0.0852187	NKX2-3_NKX2-5.p2	
mm9_v1_chr13_+_42961598_42961632	0.0851746	NKX2-3_NKX2-5.p2	AK139452|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr18_+_42713035_42713061	0.0831778	NKX2-3_NKX2-5.p2	AK165067|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr3_+_51219882_51219968	0.082439	NKX2-3_NKX2-5.p2	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr11_-_120668581_120668636	0.0823229	NKX2-3_NKX2-5.p2	AK078721|Fasn|14104|fatty acid synthase
mm9_v1_chr12_-_105011767_105011793	0.0822842	NKX2-3_NKX2-5.p2	M75718|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr15_-_81191176_81191243	0.0814953	NKX2-3_NKX2-5.p2	BC011292|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	AK003672|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	AJ006341|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	AK002388|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	NM_011399|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	BC008571|Slc25a17|20524|solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17
mm9_v1_chr11_+_62692976_62693095	0.0813192	NKX2-3_NKX2-5.p2	AK077277|Fam18b|67510|family with sequence similarity 18, member B	NM_026210|Fam18b|67510|family with sequence similarity 18, member B	AK150936|Fam18b|67510|family with sequence similarity 18, member B	BC115504|Fam18b|67510|family with sequence similarity 18, member B	BC115505|Fam18b|67510|family with sequence similarity 18, member B	AK007707|Fam18b|67510|family with sequence similarity 18, member B	AK017572|Fam18b|67510|family with sequence similarity 18, member B
mm9_v1_chr8_-_35153699_35153753	0.081286	NKX2-3_NKX2-5.p2	
mm9_v1_chr17_-_54438241_54438358	0.0808947	NKX2-3_NKX2-5.p2	AK034415|Slc5a7|63993|solute carrier family 5 (choline transporter), member 7	AK053063|Slc5a7|63993|solute carrier family 5 (choline transporter), member 7	NM_022025|Slc5a7|63993|solute carrier family 5 (choline transporter), member 7
mm9_v1_chr11_-_106646516_106646611	0.0803418	NKX2-3_NKX2-5.p2	AK219348|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr10_-_41905549_41905563	0.0797113	NKX2-3_NKX2-5.p2	AK041595|Foxo3|56484|forkhead box O3	AK159465|Foxo3|56484|forkhead box O3
mm9_v1_chr13_-_67601323_67601457	0.0794359	NKX2-3_NKX2-5.p2	BC139150|Zfp58|238693|zinc finger protein 58	BC139151|Zfp58|238693|zinc finger protein 58	AK041250|Zfp58|238693|zinc finger protein 58	AK162259|Zfp58|238693|zinc finger protein 58	AK167399|Zfp58|238693|zinc finger protein 58	NM_001007575|Zfp58|238693|zinc finger protein 58
mm9_v1_chr5_+_8893700_8893720	0.0788515	NKX2-3_NKX2-5.p2	J03398|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK144024|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK165484|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	NM_008830|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4
mm9_v1_chr6_-_13821449_13821517	0.0787931	NKX2-3_NKX2-5.p2	BC070405|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK002763|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK011259|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK035027|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK136158|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK028169|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK152937|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene
mm9_v1_chr2_+_131763454_131763725	0.0784786	NKX2-3_NKX2-5.p2	AK215651|Prnp|19122|prion protein	AK205534|Prnp|19122|prion protein	AK213884|Prnp|19122|prion protein	AK206219|Prnp|19122|prion protein
mm9_v1_chr3_-_141645214_141645214	0.0783192	NKX2-3_NKX2-5.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr15_-_99305127_99305160	0.0782035	NKX2-3_NKX2-5.p2	BC016225|Bcdin3d|75284|BCDIN3 domain containing	BC078455|Bcdin3d|75284|BCDIN3 domain containing	AK016154|Bcdin3d|75284|BCDIN3 domain containing	NM_029236|Bcdin3d|75284|BCDIN3 domain containing
mm9_v1_chr15_+_78860043_78860112	0.0781149	NKX2-3_NKX2-5.p2	AK195119|H1f0|14958|H1 histone family, member 0
mm9_v1_chr4_+_106260649_106260683	0.0780463	NKX2-3_NKX2-5.p2	AK010192|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr19_-_36763823_36763968	0.078013	NKX2-3_NKX2-5.p2	AK142254|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chr11_-_94254221_94254308	0.077805	NKX2-3_NKX2-5.p2	BC048825|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK155664|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY841885|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	BC150788|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534127|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534128|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534129|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY795569|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK149551|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	NM_029600|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK156615|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK172420|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3
mm9_v1_chr19_-_7025977_7026146	0.0770454	NKX2-3_NKX2-5.p2	AK029400|Bad|12015|BCL2-associated agonist of cell death
mm9_v1_chr16_-_96343290_96343364	0.076734	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_-_72559220_72559438	0.0766691	NKX2-3_NKX2-5.p2	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr12_-_16746933_16747013	0.0766663	NKX2-3_NKX2-5.p2	AK045057|Greb1|268527|gene regulated by estrogen in breast cancer protein
mm9_v1_chr18_+_89141181_89141199	0.0766199	NKX2-3_NKX2-5.p2	AF265232|Rttn|246102|rotatin	NM_175542|Rttn|246102|rotatin	AK083016|Rttn|246102|rotatin	AK141510|Rttn|246102|rotatin
mm9_v1_chrX_+_104344953_104344955	0.0760995	NKX2-3_NKX2-5.p2	NM_175442|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene	AK041740|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr10_+_19890580_19890589	0.0757568	NKX2-3_NKX2-5.p2	AK138516|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene	AK138667|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene
mm9_v1_chr6_+_136467388_136467391	0.0756533	NKX2-3_NKX2-5.p2	BC060246|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr11_+_108811065_108811123	0.0752847	NKX2-3_NKX2-5.p2	
mm9_v1_chr14_+_120724380_120724561	0.0750662	NKX2-3_NKX2-5.p2	BC020406|Mbnl2|105559|muscleblind-like 2	BC026711|Mbnl2|105559|muscleblind-like 2	GQ906534|Mbnl2|105559|muscleblind-like 2	AK216404|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr2_+_91512033_91512158	0.0747459	NKX2-3_NKX2-5.p2	AK083702|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr17_+_34176412_34176421	0.074298	NKX2-3_NKX2-5.p2	D38412|Col11a2|12815|collagen, type XI, alpha 2
mm9_v1_chr2_-_20889276_20889347	0.0741493	NKX2-3_NKX2-5.p2	BC150741|Arhgap21|71435|Rho GTPase activating protein 21	BC076629|Arhgap21|71435|Rho GTPase activating protein 21	NM_001081364|Arhgap21|71435|Rho GTPase activating protein 21	NM_001128084|Arhgap21|71435|Rho GTPase activating protein 21
mm9_v1_chr2_-_110203298_110203336	0.0734027	NKX2-3_NKX2-5.p2	AK011548|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK012026|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr15_+_55139304_55139473	0.072821	NKX2-3_NKX2-5.p2	AK017553|Col14a1|12818|collagen, type XIV, alpha 1	NM_181277|Col14a1|12818|collagen, type XIV, alpha 1	AY221110|Col14a1|12818|collagen, type XIV, alpha 1	BC138345|Col14a1|12818|collagen, type XIV, alpha 1	BC145244|Col14a1|12818|collagen, type XIV, alpha 1
mm9_v1_chr4_-_134773161_134773181	0.0727159	NKX2-3_NKX2-5.p2	AK195597|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK203584|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr12_-_53107476_53107511	0.072239	NKX2-3_NKX2-5.p2	AK032228|6530401N04Rik|328092|RIKEN cDNA 6530401N04 gene	AK016300|6530401N04Rik|328092|RIKEN cDNA 6530401N04 gene	AK018311|6530401N04Rik|328092|RIKEN cDNA 6530401N04 gene	AK042771|6530401N04Rik|328092|RIKEN cDNA 6530401N04 gene	BC089589|6530401N04Rik|328092|RIKEN cDNA 6530401N04 gene	NM_029545|6530401N04Rik|328092|RIKEN cDNA 6530401N04 gene
mm9_v1_chr6_-_5206215_5206292	0.0717517	NKX2-3_NKX2-5.p2	L76193|Pon3|269823|paraoxonase 3	AK076090|Pon3|269823|paraoxonase 3	AK088572|Pon3|269823|paraoxonase 3	NM_173006|Pon3|269823|paraoxonase 3	BC099416|Pon3|269823|paraoxonase 3
mm9_v1_chr12_+_74224693_74224793	0.071704	NKX2-3_NKX2-5.p2	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr15_-_90764873_90764944	0.0712352	NKX2-3_NKX2-5.p2	AK052821|Kif21a|16564|kinesin family member 21A	AK047208|Kif21a|16564|kinesin family member 21A
mm9_v1_chr11_-_106646226_106646242	0.0704718	NKX2-3_NKX2-5.p2	AK013106|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr10_+_20059547_20059574	0.0703591	NKX2-3_NKX2-5.p2	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr12_+_78576551_78576710	0.0702674	NKX2-3_NKX2-5.p2	AK188352|Fut8|53618|fucosyltransferase 8	AK210295|Fut8|53618|fucosyltransferase 8	AK216622|Fut8|53618|fucosyltransferase 8
mm9_v1_chr7_-_91827857_91827907	0.0701011	NKX2-3_NKX2-5.p2	AK002775|Zfand6|65098|zinc finger, AN1-type domain 6	NM_022985|Zfand6|65098|zinc finger, AN1-type domain 6	AK144902|Zfand6|65098|zinc finger, AN1-type domain 6	AK009403|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chr10_+_86984670_86984685	0.0700557	NKX2-3_NKX2-5.p2	AK149519|Pah|18478|phenylalanine hydroxylase	AK145839|Pah|18478|phenylalanine hydroxylase	BC013458|Pah|18478|phenylalanine hydroxylase
mm9_v1_chr4_+_134481298_134481299	0.0698991	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_+_153035426_153035671	0.0698821	NKX2-3_NKX2-5.p2	AK194607|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK208683|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr2_+_32583221_32583245	0.0698708	NKX2-3_NKX2-5.p2	AK042709|Sh2d3c|27387|SH2 domain containing 3C	AK085885|Sh2d3c|27387|SH2 domain containing 3C	AK135231|Sh2d3c|27387|SH2 domain containing 3C	AB030442|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr12_-_80007923_80007953	0.0695847	NKX2-3_NKX2-5.p2	BC028902|Plek2|27260|pleckstrin 2	NM_013738|Plek2|27260|pleckstrin 2	AF170564|Plek2|27260|pleckstrin 2
mm9_v1_chr2_+_43410844_43410873	0.0690283	NKX2-3_NKX2-5.p2	AK014484|Kynu|70789|kynureninase (L-kynurenine hydrolase)	AK050024|Kynu|70789|kynureninase (L-kynurenine hydrolase)	NM_027552|Kynu|70789|kynureninase (L-kynurenine hydrolase)	BC069848|Kynu|70789|kynureninase (L-kynurenine hydrolase)	AK040584|Kynu|70789|kynureninase (L-kynurenine hydrolase)	BC026950|Kynu|70789|kynureninase (L-kynurenine hydrolase)
mm9_v1_chr3_+_88140189_88140194	0.0687119	NKX2-3_NKX2-5.p2	AK155787|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr1_+_95395940_95395952	0.0683156	NKX2-3_NKX2-5.p2	AK196297|Sept2|18000|septin 2	AK216929|Sept2|18000|septin 2
mm9_v1_chrM_-_14069_14070	0.0668802	NKX2-3_NKX2-5.p2	AK138272|ND6|17722|NADH dehydrogenase subunit 6	AK140300|ND6|17722|NADH dehydrogenase subunit 6
mm9_v1_chr2_-_155648591_155648734	0.0668485	NKX2-3_NKX2-5.p2	AK198737|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr18_+_80409068_80409205	0.0667901	NKX2-3_NKX2-5.p2	AK183256|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr18_-_62915799_62916000	0.0667705	NKX2-3_NKX2-5.p2	BC072581|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK012381|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK020725|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene
mm9_v1_chr10_+_82359714_82359858	0.0664737	NKX2-3_NKX2-5.p2	AK007891|Txnrd1|50493|thioredoxin reductase 1	AK202828|Txnrd1|50493|thioredoxin reductase 1	AK204569|Txnrd1|50493|thioredoxin reductase 1	AK217830|Txnrd1|50493|thioredoxin reductase 1	AK194198|Txnrd1|50493|thioredoxin reductase 1	AK203123|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr17_-_24210402_24210430	0.0661317	NKX2-3_NKX2-5.p2	BC021777|Kctd5|69259|potassium channel tetramerisation domain containing 5	AK129077|Kctd5|69259|potassium channel tetramerisation domain containing 5	AK143644|Kctd5|69259|potassium channel tetramerisation domain containing 5
mm9_v1_chr12_-_105711324_105711536	0.0660396	NKX2-3_NKX2-5.p2	AB221548|Gsc|14836|goosecoid homeobox	Y13150|Gsc|14836|goosecoid homeobox	NM_010351|Gsc|14836|goosecoid homeobox	Y13149|Gsc|14836|goosecoid homeobox	X99239|Gsc|14836|goosecoid homeobox
mm9_v1_chr15_-_83207509_83207618	0.0658152	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_+_48626133_48626222	0.0656337	NKX2-3_NKX2-5.p2	NM_174960|Gimap9|317758|GTPase, IMAP family member 9	AK041336|Gimap9|317758|GTPase, IMAP family member 9	BC096680|Gimap9|317758|GTPase, IMAP family member 9	BC038043|Gimap9|317758|GTPase, IMAP family member 9
mm9_v1_chr11_+_101443529_101443628	0.0655326	NKX2-3_NKX2-5.p2	AK146019|Tmem106a|217203|transmembrane protein 106A	NM_144830|Tmem106a|217203|transmembrane protein 106A	AK154217|Tmem106a|217203|transmembrane protein 106A	AK150285|Tmem106a|217203|transmembrane protein 106A	AK152741|Tmem106a|217203|transmembrane protein 106A	AK151842|Tmem106a|217203|transmembrane protein 106A	BC033268|Tmem106a|217203|transmembrane protein 106A	AK170900|Tmem106a|217203|transmembrane protein 106A	AK172282|Tmem106a|217203|transmembrane protein 106A	AK149650|Tmem106a|217203|transmembrane protein 106A	AK168437|Tmem106a|217203|transmembrane protein 106A	AK169081|Tmem106a|217203|transmembrane protein 106A
mm9_v1_chr14_-_67627598_67627723	0.0652936	NKX2-3_NKX2-5.p2	AK220143|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC049081|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK139950|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK004667|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC085237|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK018668|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK155040|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AY057069|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK013467|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK007920|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AF067395|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK168482|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK169391|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	NM_009761|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like
mm9_v1_chr1_+_45402907_45402949	0.0649149	NKX2-3_NKX2-5.p2	AK029451|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr3_-_51129908_51129958	0.0645781	NKX2-3_NKX2-5.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr2_-_119980243_119980354	0.0644546	NKX2-3_NKX2-5.p2	BC012272|Ehd4|98878|EH-domain containing 4	AK149760|Ehd4|98878|EH-domain containing 4	AK163835|Ehd4|98878|EH-domain containing 4	AK147186|Ehd4|98878|EH-domain containing 4	AK159235|Ehd4|98878|EH-domain containing 4	AK159597|Ehd4|98878|EH-domain containing 4	NM_133838|Ehd4|98878|EH-domain containing 4	AK166101|Ehd4|98878|EH-domain containing 4	AK169343|Ehd4|98878|EH-domain containing 4
mm9_v1_chr7_+_52965052_52965376	0.0644425	NKX2-3_NKX2-5.p2	AK192990|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr3_+_144260300_144260351	0.0644106	NKX2-3_NKX2-5.p2	AK205282|Sep15|93684|selenoprotein	AK213933|Sep15|93684|selenoprotein	AK218207|Sep15|93684|selenoprotein
mm9_v1_chr5_+_75471625_75471626	0.0644009	NKX2-3_NKX2-5.p2	NM_133256|Gsx2|14843|GS homeobox 2	S79041|Gsx2|14843|GS homeobox 2	BC119464|Gsx2|14843|GS homeobox 2	BC119465|Gsx2|14843|GS homeobox 2
mm9_v1_chr3_+_68272097_68272120	0.0643413	NKX2-3_NKX2-5.p2	AK083464|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr18_+_25224729_25224737	0.0635596	NKX2-3_NKX2-5.p2	BC060607|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr8_-_113426341_113426387	0.0631652	NKX2-3_NKX2-5.p2	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr15_-_43701569_43701581	0.0629877	NKX2-3_NKX2-5.p2	BC076589|Tmem74|239408|transmembrane protein 74	AK046420|Tmem74|239408|transmembrane protein 74	NM_175502|Tmem74|239408|transmembrane protein 74	AK045145|Tmem74|239408|transmembrane protein 74
mm9_v1_chr4_-_153532466_153532665	0.0629265	NKX2-3_NKX2-5.p2	AK182064|Tprgl|67808|transformation related protein 63 regulated like
mm9_v1_chr6_-_116666759_116666930	0.0629139	NKX2-3_NKX2-5.p2	BC116440|Tmem72|319776|transmembrane protein 72	BC116441|Tmem72|319776|transmembrane protein 72	AK085603|Tmem72|319776|transmembrane protein 72	NM_178768|Tmem72|319776|transmembrane protein 72	AK049938|Tmem72|319776|transmembrane protein 72	AK033856|Tmem72|319776|transmembrane protein 72	BC093486|Tmem72|319776|transmembrane protein 72	AK049048|Tmem72|319776|transmembrane protein 72	AK141578|Tmem72|319776|transmembrane protein 72
mm9_v1_chr3_+_88342459_88342597	0.0619439	NKX2-3_NKX2-5.p2	AK012557|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr10_+_80644982_80645055	0.0619241	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_+_41249215_41249327	0.0617515	NKX2-3_NKX2-5.p2	
mm9_v1_chr12_+_101447413_101447431	0.0616763	NKX2-3_NKX2-5.p2	BC048752|Calm1|12313|calmodulin 1
mm9_v1_chr7_-_34926107_34926132	0.0612801	NKX2-3_NKX2-5.p2	AK218279|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK208593|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr6_-_113465872_113465930	0.0608401	NKX2-3_NKX2-5.p2	
mm9_v1_chr1_-_69154627_69154642	0.0607944	NKX2-3_NKX2-5.p2	AK144050|Erbb4|13869|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	NM_010154|Erbb4|13869|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
mm9_v1_chr8_+_74675802_74675827	0.0603728	NKX2-3_NKX2-5.p2	
mm9_v1_chr5_+_150480804_150480876	0.0594502	NKX2-3_NKX2-5.p2	NM_001081204|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK089440|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK145082|B3galtl|381694|beta 1,3-galactosyltransferase-like	AB253762|B3galtl|381694|beta 1,3-galactosyltransferase-like
mm9_v1_chr9_+_75192367_75192390	0.0593355	NKX2-3_NKX2-5.p2	AK211560|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK215403|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK216405|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	AK206251|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5
mm9_v1_chr4_+_59016013_59016081	0.0590656	NKX2-3_NKX2-5.p2	NM_001033165|Dnajc25|72429|DnaJ (Hsp40) homolog, subfamily C, member 25
mm9_v1_chr4_+_57867433_57867513	0.0588202	NKX2-3_NKX2-5.p2	NM_001035533|Akap2|11641|A kinase (PRKA) anchor protein 2	AK182017|Akap2|11641|A kinase (PRKA) anchor protein 2	AK209944|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr9_-_107522452_107522481	0.0585918	NKX2-3_NKX2-5.p2	
mm9_v1_chr15_-_76983985_76984241	0.0584392	NKX2-3_NKX2-5.p2	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr9_+_74800828_74800859	0.0581019	NKX2-3_NKX2-5.p2	BC060215|BC031353|235493|cDNA sequence BC031353	NM_001113283|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr5_-_23122181_23122418	0.057656	NKX2-3_NKX2-5.p2	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr10_+_86984705_86984718	0.0572764	NKX2-3_NKX2-5.p2	X51942|Pah|18478|phenylalanine hydroxylase
mm9_v1_chr11_+_67779978_67779989	0.056714	NKX2-3_NKX2-5.p2	AK035105|Stx8|55943|syntaxin 8	BC048167|Stx8|55943|syntaxin 8	NM_018768|Stx8|55943|syntaxin 8	BC038186|Stx8|55943|syntaxin 8	AF093064|Stx8|55943|syntaxin 8	AB040054|Stx8|55943|syntaxin 8
mm9_v1_chr7_+_57165668_57165722	0.0564708	NKX2-3_NKX2-5.p2	BC157997|Slc6a5|104245|solute carrier family 6 (neurotransmitter transporter, glycine), member 5	BC172125|Slc6a5|104245|solute carrier family 6 (neurotransmitter transporter, glycine), member 5	NM_001146013|Slc6a5|104245|solute carrier family 6 (neurotransmitter transporter, glycine), member 5	AB118159|Slc6a5|104245|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm9_v1_chr6_-_122560022_122560104	0.0562841	NKX2-3_NKX2-5.p2	S52658|Gdf3|14562|growth differentiation factor 3	AK160533|Gdf3|14562|growth differentiation factor 3	AK152457|Gdf3|14562|growth differentiation factor 3	NM_008108|Gdf3|14562|growth differentiation factor 3	L06443|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr4_-_88367207_88367304	0.0561765	NKX2-3_NKX2-5.p2	
mm9_v1_chr19_+_21354915_21354945	0.0553253	NKX2-3_NKX2-5.p2	AK185148|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr5_-_31490075_31490203	0.0552019	NKX2-3_NKX2-5.p2	
mm9_v1_chr6_+_146591082_146591141	0.0551332	NKX2-3_NKX2-5.p2	AK009742|Med21|108098|mediator complex subunit 21	AK012217|Med21|108098|mediator complex subunit 21	NM_025315|Med21|108098|mediator complex subunit 21	AK014428|Med21|108098|mediator complex subunit 21	AK019417|Med21|108098|mediator complex subunit 21	BC012286|Med21|108098|mediator complex subunit 21
mm9_v1_chr2_-_155984800_155984951	0.0550934	NKX2-3_NKX2-5.p2	AK134091|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr13_+_76718869_76718988	0.0548078	NKX2-3_NKX2-5.p2	AK154322|Mctp1|78771|multiple C2 domains, transmembrane 1	AK144765|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr3_+_64913564_64913693	0.0542826	NKX2-3_NKX2-5.p2	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chrX_-_156560678_156560850	0.0540265	NKX2-3_NKX2-5.p2	AL355693|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr11_-_76577079_76577091	0.0539597	NKX2-3_NKX2-5.p2	AK147799|Gosr1|53334|golgi SNAP receptor complex member 1	AK154972|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr18_-_66129715_66129836	0.0539457	NKX2-3_NKX2-5.p2	AY264291|Cplx4|225644|complexin 4	BC016082|Cplx4|225644|complexin 4	NM_145493|Cplx4|225644|complexin 4	AK044262|Cplx4|225644|complexin 4
mm9_v1_chr7_+_109044853_109044944	0.0533537	NKX2-3_NKX2-5.p2	AK139635|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	NM_027532|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK135201|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK014309|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	BC080730|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene
mm9_v1_chr5_-_24606229_24606247	0.0523108	NKX2-3_NKX2-5.p2	BC015283|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr11_-_40562329_40562432	0.0521558	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_100442831_100442963	0.0516865	NKX2-3_NKX2-5.p2	AK217119|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr4_+_34497840_34497946	0.0516437	NKX2-3_NKX2-5.p2	NM_001007589|Akirin2|433693|akirin 2	BC082305|Akirin2|433693|akirin 2
mm9_v1_chr18_-_57134974_57135060	0.0510183	NKX2-3_NKX2-5.p2	BC116244|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC116245|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC127172|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK021208|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK053997|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK140255|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	NM_029909|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene
mm9_v1_chr9_-_21572496_21572571	0.0504245	NKX2-3_NKX2-5.p2	AK212559|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chr15_-_94408654_94408675	0.0504048	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_5700192_5700309	0.0502065	NKX2-3_NKX2-5.p2	AK215440|Dbnl|13169|drebrin-like
mm9_v1_chr10_-_30320470_30320554	0.0502047	NKX2-3_NKX2-5.p2	BC048703|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK014181|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK010722|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AK032943|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	AF532979|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)	NM_028604|Trmt11|73681|tRNA methyltransferase 11 homolog (S. cerevisiae)
mm9_v1_chr2_-_65201979_65202090	0.0494148	NKX2-3_NKX2-5.p2	AK041015|Slc38a11|320106|solute carrier family 38, member 11	AK139966|Slc38a11|320106|solute carrier family 38, member 11	NM_177074|Slc38a11|320106|solute carrier family 38, member 11	AK034126|Slc38a11|320106|solute carrier family 38, member 11	AK043610|Slc38a11|320106|solute carrier family 38, member 11
mm9_v1_chr4_-_53156928_53156953	0.0493198	NKX2-3_NKX2-5.p2	X75926|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr1_+_51346086_51346100	0.0491639	NKX2-3_NKX2-5.p2	AK084096|Sdpr|20324|serum deprivation response
mm9_v1_chr11_+_116532973_116533009	0.0489846	NKX2-3_NKX2-5.p2	AK007675|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK013681|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK037979|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	BC055707|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK088915|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene
mm9_v1_chr9_-_103125934_103125973	0.0487813	NKX2-3_NKX2-5.p2	BC018573|Trf|22041|transferrin
mm9_v1_chr8_+_86247034_86247066	0.0483799	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_-_154429368_154429412	0.0481831	NKX2-3_NKX2-5.p2	BC025796|Pxmp4|59038|peroxisomal membrane protein 4	AJ271476|Pxmp4|59038|peroxisomal membrane protein 4	AK143785|Pxmp4|59038|peroxisomal membrane protein 4	AK156743|Pxmp4|59038|peroxisomal membrane protein 4	AK050647|Pxmp4|59038|peroxisomal membrane protein 4	NM_021534|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr7_+_77510266_77510283	0.0481827	NKX2-3_NKX2-5.p2	AK045070|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr19_+_9092973_9093058	0.0471303	NKX2-3_NKX2-5.p2	AK003448|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)
mm9_v1_chr17_-_65929913_65929945	0.046817	NKX2-3_NKX2-5.p2	
mm9_v1_chr7_-_139749889_139749896	0.0468101	NKX2-3_NKX2-5.p2	
mm9_v1_chr10_-_62784937_62784977	0.0467076	NKX2-3_NKX2-5.p2	AK139946|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr4_+_137762192_137762206	0.0465978	NKX2-3_NKX2-5.p2	AK005120|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3
mm9_v1_chr4_+_154932761_154932805	0.0463478	NKX2-3_NKX2-5.p2	AK194739|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK203879|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK205062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr2_-_126701791_126701996	0.0452894	NKX2-3_NKX2-5.p2	BC145122|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	BC150709|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AF376052|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK162483|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK014698|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AF149013|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AY032951|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	AK052823|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	NM_001164325|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7	NM_021450|Trpm7|58800|transient receptor potential cation channel, subfamily M, member 7
mm9_v1_chr14_+_26484518_26484659	0.045155	NKX2-3_NKX2-5.p2	AK132106|Gm10397|100038401|predicted gene 10397
mm9_v1_chr2_+_80457201_80457422	0.0439764	NKX2-3_NKX2-5.p2	AF237618|Dusp19|68082|dual specificity phosphatase 19	NM_024438|Dusp19|68082|dual specificity phosphatase 19	AK010127|Dusp19|68082|dual specificity phosphatase 19	AK077871|Dusp19|68082|dual specificity phosphatase 19	AK170170|Dusp19|68082|dual specificity phosphatase 19	AK018369|Dusp19|68082|dual specificity phosphatase 19	AB051896|Dusp19|68082|dual specificity phosphatase 19	AK049927|Dusp19|68082|dual specificity phosphatase 19	AB038769|Dusp19|68082|dual specificity phosphatase 19	BC021591|Dusp19|68082|dual specificity phosphatase 19	AK083610|Dusp19|68082|dual specificity phosphatase 19
mm9_v1_chr17_-_24210437_24210453	0.043781	NKX2-3_NKX2-5.p2	AK052960|Kctd5|69259|potassium channel tetramerisation domain containing 5	NM_027008|Kctd5|69259|potassium channel tetramerisation domain containing 5
mm9_v1_chr16_-_84955086_84955166	0.0433951	NKX2-3_NKX2-5.p2	AK190928|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr19_+_9026020_9026327	0.0432934	NKX2-3_NKX2-5.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr16_+_92292580_92292633	0.042827	NKX2-3_NKX2-5.p2	AK008619|Kcne2|246133|potassium voltage-gated channel, Isk-related subfamily, gene 2	NM_134110|Kcne2|246133|potassium voltage-gated channel, Isk-related subfamily, gene 2
mm9_v1_chr8_+_125914690_125914738	0.0428131	NKX2-3_NKX2-5.p2	AK177952|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK179328|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK186829|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr3_+_102847115_102847128	0.0425853	NKX2-3_NKX2-5.p2	BC029058|Csde1|229663|cold shock domain containing E1, RNA binding
mm9_v1_chr5_-_137969610_137969651	0.0423074	NKX2-3_NKX2-5.p2	
mm9_v1_chr9_-_66880619_66880631	0.0423066	NKX2-3_NKX2-5.p2	AK190148|Tpm1|22003|tropomyosin 1, alpha	AK083087|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr12_-_21396339_21396369	0.0422929	NKX2-3_NKX2-5.p2	
mm9_v1_chr13_-_115078961_115078988	0.0421879	NKX2-3_NKX2-5.p2	AK035175|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr10_+_80644736_80644777	0.0414035	NKX2-3_NKX2-5.p2	AK201283|Eef2|13629|eukaryotic translation elongation factor 2	AK189877|Eef2|13629|eukaryotic translation elongation factor 2	AK189936|Eef2|13629|eukaryotic translation elongation factor 2	AK190622|Eef2|13629|eukaryotic translation elongation factor 2	AK190628|Eef2|13629|eukaryotic translation elongation factor 2	AK190763|Eef2|13629|eukaryotic translation elongation factor 2	AK190784|Eef2|13629|eukaryotic translation elongation factor 2	AK190861|Eef2|13629|eukaryotic translation elongation factor 2	AK190927|Eef2|13629|eukaryotic translation elongation factor 2	AK191362|Eef2|13629|eukaryotic translation elongation factor 2	AK191366|Eef2|13629|eukaryotic translation elongation factor 2	AK191562|Eef2|13629|eukaryotic translation elongation factor 2	AK191622|Eef2|13629|eukaryotic translation elongation factor 2	AK191649|Eef2|13629|eukaryotic translation elongation factor 2	AK191693|Eef2|13629|eukaryotic translation elongation factor 2	AK191810|Eef2|13629|eukaryotic translation elongation factor 2	AK191929|Eef2|13629|eukaryotic translation elongation factor 2	AK192150|Eef2|13629|eukaryotic translation elongation factor 2	AK192166|Eef2|13629|eukaryotic translation elongation factor 2	AK192179|Eef2|13629|eukaryotic translation elongation factor 2	AK192372|Eef2|13629|eukaryotic translation elongation factor 2	AK192424|Eef2|13629|eukaryotic translation elongation factor 2	AK192757|Eef2|13629|eukaryotic translation elongation factor 2	AK192765|Eef2|13629|eukaryotic translation elongation factor 2	AK193012|Eef2|13629|eukaryotic translation elongation factor 2	AK193195|Eef2|13629|eukaryotic translation elongation factor 2	AK193267|Eef2|13629|eukaryotic translation elongation factor 2	AK193334|Eef2|13629|eukaryotic translation elongation factor 2	AK193679|Eef2|13629|eukaryotic translation elongation factor 2	AK193887|Eef2|13629|eukaryotic translation elongation factor 2	AK193930|Eef2|13629|eukaryotic translation elongation factor 2	AK193934|Eef2|13629|eukaryotic translation elongation factor 2	AK193935|Eef2|13629|eukaryotic translation elongation factor 2	AK193939|Eef2|13629|eukaryotic translation elongation factor 2	AK194344|Eef2|13629|eukaryotic translation elongation factor 2	AK195004|Eef2|13629|eukaryotic translation elongation factor 2	AK195059|Eef2|13629|eukaryotic translation elongation factor 2	AK195080|Eef2|13629|eukaryotic translation elongation factor 2	AK195098|Eef2|13629|eukaryotic translation elongation factor 2	AK195214|Eef2|13629|eukaryotic translation elongation factor 2	AK195454|Eef2|13629|eukaryotic translation elongation factor 2	AK195506|Eef2|13629|eukaryotic translation elongation factor 2	AK196079|Eef2|13629|eukaryotic translation elongation factor 2	AK196233|Eef2|13629|eukaryotic translation elongation factor 2	AK196287|Eef2|13629|eukaryotic translation elongation factor 2	AK196489|Eef2|13629|eukaryotic translation elongation factor 2	AK196549|Eef2|13629|eukaryotic translation elongation factor 2	AK196556|Eef2|13629|eukaryotic translation elongation factor 2	AK196849|Eef2|13629|eukaryotic translation elongation factor 2	AK196962|Eef2|13629|eukaryotic translation elongation factor 2	AK197222|Eef2|13629|eukaryotic translation elongation factor 2	AK197244|Eef2|13629|eukaryotic translation elongation factor 2	AK197312|Eef2|13629|eukaryotic translation elongation factor 2	AK197319|Eef2|13629|eukaryotic translation elongation factor 2	AK197355|Eef2|13629|eukaryotic translation elongation factor 2	AK197363|Eef2|13629|eukaryotic translation elongation factor 2	AK197549|Eef2|13629|eukaryotic translation elongation factor 2	AK197618|Eef2|13629|eukaryotic translation elongation factor 2	AK197705|Eef2|13629|eukaryotic translation elongation factor 2	AK197848|Eef2|13629|eukaryotic translation elongation factor 2	AK198166|Eef2|13629|eukaryotic translation elongation factor 2	AK198483|Eef2|13629|eukaryotic translation elongation factor 2	AK198569|Eef2|13629|eukaryotic translation elongation factor 2	AK198683|Eef2|13629|eukaryotic translation elongation factor 2	AK198891|Eef2|13629|eukaryotic translation elongation factor 2	AK199179|Eef2|13629|eukaryotic translation elongation factor 2	AK199404|Eef2|13629|eukaryotic translation elongation factor 2	AK199520|Eef2|13629|eukaryotic translation elongation factor 2	AK199588|Eef2|13629|eukaryotic translation elongation factor 2	AK199675|Eef2|13629|eukaryotic translation elongation factor 2	AK199703|Eef2|13629|eukaryotic translation elongation factor 2	AK199709|Eef2|13629|eukaryotic translation elongation factor 2	AK199751|Eef2|13629|eukaryotic translation elongation factor 2	AK199803|Eef2|13629|eukaryotic translation elongation factor 2	AK199810|Eef2|13629|eukaryotic translation elongation factor 2	AK200092|Eef2|13629|eukaryotic translation elongation factor 2	AK200307|Eef2|13629|eukaryotic translation elongation factor 2	AK200465|Eef2|13629|eukaryotic translation elongation factor 2	AK200510|Eef2|13629|eukaryotic translation elongation factor 2	AK200525|Eef2|13629|eukaryotic translation elongation factor 2	AK200843|Eef2|13629|eukaryotic translation elongation factor 2	AK201052|Eef2|13629|eukaryotic translation elongation factor 2	AK201117|Eef2|13629|eukaryotic translation elongation factor 2	AK201643|Eef2|13629|eukaryotic translation elongation factor 2	AK202077|Eef2|13629|eukaryotic translation elongation factor 2	AK202127|Eef2|13629|eukaryotic translation elongation factor 2	AK202201|Eef2|13629|eukaryotic translation elongation factor 2	AK202326|Eef2|13629|eukaryotic translation elongation factor 2	AK202401|Eef2|13629|eukaryotic translation elongation factor 2	AK202472|Eef2|13629|eukaryotic translation elongation factor 2	AK202485|Eef2|13629|eukaryotic translation elongation factor 2	AK202505|Eef2|13629|eukaryotic translation elongation factor 2	AK202849|Eef2|13629|eukaryotic translation elongation factor 2	AK202866|Eef2|13629|eukaryotic translation elongation factor 2	AK203391|Eef2|13629|eukaryotic translation elongation factor 2	AK204582|Eef2|13629|eukaryotic translation elongation factor 2	AK204590|Eef2|13629|eukaryotic translation elongation factor 2	AK204680|Eef2|13629|eukaryotic translation elongation factor 2	AK204768|Eef2|13629|eukaryotic translation elongation factor 2	AK204823|Eef2|13629|eukaryotic translation elongation factor 2	AK207046|Eef2|13629|eukaryotic translation elongation factor 2	AK211931|Eef2|13629|eukaryotic translation elongation factor 2	AK218458|Eef2|13629|eukaryotic translation elongation factor 2	AK192362|Eef2|13629|eukaryotic translation elongation factor 2	AK203693|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr13_-_117814079_117814204	0.040991	NKX2-3_NKX2-5.p2	AK150732|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK151510|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK152919|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK153169|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK153270|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK150113|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	BC021881|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK149889|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK149918|Parp8|52552|poly (ADP-ribose) polymerase family, member 8	AK150208|Parp8|52552|poly (ADP-ribose) polymerase family, member 8
mm9_v1_chr6_+_129491258_129491317	0.040941	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_51085400_51085500	0.0409299	NKX2-3_NKX2-5.p2	AF005423|Clk4|12750|CDC like kinase 4	AK161739|Clk4|12750|CDC like kinase 4
mm9_v1_chr10_+_42580317_42580598	0.0403985	NKX2-3_NKX2-5.p2	NM_172938|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AF397911|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK034171|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	BC043310|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK047972|Scml4|268297|sex comb on midleg-like 4 (Drosophila)
mm9_v1_chr6_-_118361541_118361556	0.0401053	NKX2-3_NKX2-5.p2	BC030906|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)
mm9_v1_chr1_+_173770709_173770788	0.0398109	NKX2-3_NKX2-5.p2	NM_013489|Cd84|12523|CD84 antigen	AF043445|Cd84|12523|CD84 antigen	AK171067|Cd84|12523|CD84 antigen	AK037385|Cd84|12523|CD84 antigen	AK040694|Cd84|12523|CD84 antigen	AK156464|Cd84|12523|CD84 antigen	AK157075|Cd84|12523|CD84 antigen	BC140952|Cd84|12523|CD84 antigen	BC144736|Cd84|12523|CD84 antigen	AK154834|Cd84|12523|CD84 antigen	AB196812|Cd84|12523|CD84 antigen	AB196813|Cd84|12523|CD84 antigen	AB196814|Cd84|12523|CD84 antigen	AB196815|Cd84|12523|CD84 antigen
mm9_v1_chr16_-_9995626_9995652	0.0393592	NKX2-3_NKX2-5.p2	
mm9_v1_chr8_+_12984287_12984308	0.0390613	NKX2-3_NKX2-5.p2	AK147252|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr11_-_53097625_53097670	0.0383726	NKX2-3_NKX2-5.p2	AK179174|Hspa4|15525|heat shock protein 4
mm9_v1_chr10_-_77734341_77734501	0.0378365	NKX2-3_NKX2-5.p2	
mm9_v1_chr1_+_9591492_9591529	0.0377525	NKX2-3_NKX2-5.p2	AK043576|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr16_+_45093784_45093803	0.0377041	NKX2-3_NKX2-5.p2	AK144183|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr19_+_23241546_23241602	0.037675	NKX2-3_NKX2-5.p2	AK009928|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr5_-_100588826_100588826	0.0376017	NKX2-3_NKX2-5.p2	BC055321|Tmem150c|231503|transmembrane protein 150C	NM_182841|Tmem150c|231503|transmembrane protein 150C
mm9_v1_chr7_-_139768035_139768106	0.0375691	NKX2-3_NKX2-5.p2	AK128914|Oat|18242|ornithine aminotransferase	AK145877|Oat|18242|ornithine aminotransferase	NM_016978|Oat|18242|ornithine aminotransferase
mm9_v1_chr4_+_5726856_5726857	0.0374409	NKX2-3_NKX2-5.p2	AK049898|Fam110b|242297|family with sequence similarity 110, member B
mm9_v1_chr18_+_35750071_35750097	0.0362339	NKX2-3_NKX2-5.p2	AK166063|Matr3|17184|matrin 3
mm9_v1_chr2_-_105234998_105235010	0.0354325	NKX2-3_NKX2-5.p2	AK214949|Rcn1|19672|reticulocalbin 1
mm9_v1_chr5_+_65221116_65221144	0.0348838	NKX2-3_NKX2-5.p2	AK036932|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr3_+_20008792_20008792	0.0347763	NKX2-3_NKX2-5.p2	BC039796|Hltf|20585|helicase-like transcription factor
mm9_v1_chr5_+_117827904_117828056	0.0345927	NKX2-3_NKX2-5.p2	AK195234|Wsb2|59043|WD repeat and SOCS box-containing 2	AK198504|Wsb2|59043|WD repeat and SOCS box-containing 2	AK206996|Wsb2|59043|WD repeat and SOCS box-containing 2	AK210681|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr12_+_45412878_45412942	0.0345356	NKX2-3_NKX2-5.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr12_+_66176588_66176613	0.0336594	NKX2-3_NKX2-5.p2	AK039944|Fancm|104806|Fanconi anemia, complementation group M	AK084697|Fancm|104806|Fanconi anemia, complementation group M	AK086395|Fancm|104806|Fanconi anemia, complementation group M	AK050306|Fancm|104806|Fanconi anemia, complementation group M	NM_178912|Fancm|104806|Fanconi anemia, complementation group M	AK053715|Fancm|104806|Fanconi anemia, complementation group M	BC150785|Fancm|104806|Fanconi anemia, complementation group M	AK173211|Fancm|104806|Fanconi anemia, complementation group M
mm9_v1_chr4_-_134081867_134082196	0.0334541	NKX2-3_NKX2-5.p2	AK196748|Fam54b|76824|family with sequence similarity 54, member B	AK205711|Fam54b|76824|family with sequence similarity 54, member B	AK194688|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr16_+_34995000_34995001	0.0334031	NKX2-3_NKX2-5.p2	BC038902|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr5_+_24606757_24606800	0.0333947	NKX2-3_NKX2-5.p2	BC094288|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene	AK013483|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene	AK076604|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene
mm9_v1_chr13_+_113657736_113657889	0.0332736	NKX2-3_NKX2-5.p2	
mm9_v1_chr15_-_72926936_72926959	0.0332213	NKX2-3_NKX2-5.p2	AK003962|1110029L17Rik|68722|RIKEN cDNA 1110029L17 gene
mm9_v1_chr15_+_102236573_102236691	0.032979	NKX2-3_NKX2-5.p2	
mm9_v1_chr9_+_120019498_120019516	0.0321144	NKX2-3_NKX2-5.p2	AK078385|Slc25a38|208638|solute carrier family 25, member 38	BC010801|Slc25a38|208638|solute carrier family 25, member 38	NM_144793|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr18_+_65352751_65352821	0.0320373	NKX2-3_NKX2-5.p2	AK213593|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like	AK215536|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr2_+_174170886_174171016	0.0320245	NKX2-3_NKX2-5.p2	AK178212|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK182236|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK182338|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK183674|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK186374|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr11_+_67779992_67780002	0.0314759	NKX2-3_NKX2-5.p2	AK166117|Stx8|55943|syntaxin 8	AF036716|Stx8|55943|syntaxin 8
mm9_v1_chr5_+_91456489_91456542	0.0308679	NKX2-3_NKX2-5.p2	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chrX_+_91881454_91881500	0.030857	NKX2-3_NKX2-5.p2	BC117825|Gspt2|14853|G1 to S phase transition 2	BC117826|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr17_-_57163687_57163784	0.03069	NKX2-3_NKX2-5.p2	BC064454|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr6_-_144157971_144158077	0.0299554	NKX2-3_NKX2-5.p2	BC110478|Sox5|20678|SRY-box containing gene 5	AK132307|Sox5|20678|SRY-box containing gene 5	AB006330|Sox5|20678|SRY-box containing gene 5	AJ010604|Sox5|20678|SRY-box containing gene 5	NM_001113559|Sox5|20678|SRY-box containing gene 5	NM_011444|Sox5|20678|SRY-box containing gene 5
mm9_v1_chr6_+_33979444_33979454	0.0293706	NKX2-3_NKX2-5.p2	AK014976|Lrguk|74354|leucine-rich repeats and guanylate kinase domain containing	NM_028886|Lrguk|74354|leucine-rich repeats and guanylate kinase domain containing	AK029666|Lrguk|74354|leucine-rich repeats and guanylate kinase domain containing	AK045903|Lrguk|74354|leucine-rich repeats and guanylate kinase domain containing
mm9_v1_chrX_-_22797942_22797952	0.0291375	NKX2-3_NKX2-5.p2	AK013399|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chrX_+_97710893_97711108	0.0289202	NKX2-3_NKX2-5.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr9_+_107950264_107950349	0.0284405	NKX2-3_NKX2-5.p2	AK180972|Ip6k1|27399|inositol hexaphosphate kinase 1	AK192812|Ip6k1|27399|inositol hexaphosphate kinase 1	AK193720|Ip6k1|27399|inositol hexaphosphate kinase 1	AK196386|Ip6k1|27399|inositol hexaphosphate kinase 1	AK198963|Ip6k1|27399|inositol hexaphosphate kinase 1	AK200277|Ip6k1|27399|inositol hexaphosphate kinase 1	AK213940|Ip6k1|27399|inositol hexaphosphate kinase 1	BC069990|Ip6k1|27399|inositol hexaphosphate kinase 1	BC039929|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr1_-_82287067_82287145	0.0268577	NKX2-3_NKX2-5.p2	L24563|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr17_+_34400152_34400289	0.0266782	NKX2-3_NKX2-5.p2	NM_207105|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK077436|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC008168|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK170370|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171211|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK155573|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171281|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK172409|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK156899|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171005|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171290|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171298|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC010322|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC057998|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M15848|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF065913|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF119251|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF119252|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AY452202|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13537|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13538|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13539|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13540|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M66213|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF065912|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13541|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1
mm9_v1_chr6_-_55631256_55631256	0.0266338	NKX2-3_NKX2-5.p2	AK144360|Neurod6|11922|neurogenic differentiation 6	NM_009717|Neurod6|11922|neurogenic differentiation 6
mm9_v1_chr9_-_49606862_49606915	0.026241	NKX2-3_NKX2-5.p2	BC011310|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chrX_+_132806184_132806337	0.026172	NKX2-3_NKX2-5.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr13_-_100972022_100972078	0.0261665	NKX2-3_NKX2-5.p2	AF102871|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF135489|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF135490|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF381770|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AY147000|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AY147001|Naip2|17948|NLR family, apoptosis inhibitory protein 2	NM_001126182|Naip2|17948|NLR family, apoptosis inhibitory protein 2	NM_010872|Naip2|17948|NLR family, apoptosis inhibitory protein 2
mm9_v1_chr16_+_30065419_30065442	0.0261392	NKX2-3_NKX2-5.p2	AK133538|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	AK132536|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC018375|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC051428|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	NM_008235|Hes1|15205|hairy and enhancer of split 1 (Drosophila)
mm9_v1_chr4_-_3761538_3761694	0.0254956	NKX2-3_NKX2-5.p2	AK150667|Rps20|67427|ribosomal protein S20
mm9_v1_chr6_+_47870566_47870709	0.025252	NKX2-3_NKX2-5.p2	NM_001145881|Zfp212|232784|Zinc finger protein 212	NM_145576|Zfp212|232784|Zinc finger protein 212	BC088737|Zfp212|232784|Zinc finger protein 212	BC006693|Zfp212|232784|Zinc finger protein 212	AK129476|Zfp212|232784|Zinc finger protein 212
mm9_v1_chr14_-_37935305_37935311	0.0250628	NKX2-3_NKX2-5.p2	
mm9_v1_chr11_+_100442602_100442668	0.0249192	NKX2-3_NKX2-5.p2	AK190081|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK211066|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr11_-_69480763_69480942	0.0248903	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_+_14978339_14978456	0.024808	NKX2-3_NKX2-5.p2	
mm9_v1_chr12_-_36769054_36769127	0.0246374	NKX2-3_NKX2-5.p2	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr17_+_23949101_23949124	0.0240749	NKX2-3_NKX2-5.p2	AK081577|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr7_-_53176218_53176229	0.023932	NKX2-3_NKX2-5.p2	AK146939|Emp3|13732|epithelial membrane protein 3	NM_001146346|Emp3|13732|epithelial membrane protein 3
mm9_v1_chr7_-_109713935_109713982	0.0235656	NKX2-3_NKX2-5.p2	BC010580|Trim21|20821|tripartite motif-containing 21	L27990|Trim21|20821|tripartite motif-containing 21	AK150484|Trim21|20821|tripartite motif-containing 21	AK171489|Trim21|20821|tripartite motif-containing 21	AK152619|Trim21|20821|tripartite motif-containing 21	AK141294|Trim21|20821|tripartite motif-containing 21	NM_001082552|Trim21|20821|tripartite motif-containing 21	NM_009277|Trim21|20821|tripartite motif-containing 21
mm9_v1_chr5_-_99681835_99681949	0.0228296	NKX2-3_NKX2-5.p2	AK028756|Rasgef1b|320292|RasGEF domain family, member 1B	BC052726|Rasgef1b|320292|RasGEF domain family, member 1B	AK090085|Rasgef1b|320292|RasGEF domain family, member 1B	AK149812|Rasgef1b|320292|RasGEF domain family, member 1B	AY129963|Rasgef1b|320292|RasGEF domain family, member 1B	BC050858|Rasgef1b|320292|RasGEF domain family, member 1B	NM_145839|Rasgef1b|320292|RasGEF domain family, member 1B	NM_181318|Rasgef1b|320292|RasGEF domain family, member 1B
mm9_v1_chr19_+_11986907_11986958	0.0226388	NKX2-3_NKX2-5.p2	AK087559|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170745|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170408|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154873|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK085013|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	BC058941|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr17_+_35403130_35403196	0.0219269	NKX2-3_NKX2-5.p2	K01446|H2-D1|14964|histocompatibility 2, D region locus 1
mm9_v1_chrX_-_45944937_45944938	0.0218979	NKX2-3_NKX2-5.p2	BC051397|Zfp280c|208968|zinc finger protein 280C	NM_001166650|Zfp280c|208968|zinc finger protein 280C	BC028839|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr13_+_54203236_54203344	0.0215919	NKX2-3_NKX2-5.p2	AK048238|Sfxn1|14057|sideroflexin 1
mm9_v1_chr3_-_10208575_10208582	0.0215337	NKX2-3_NKX2-5.p2	AK003143|Fabp4|11770|fatty acid binding protein 4, adipocyte	AK088535|Fabp4|11770|fatty acid binding protein 4, adipocyte	NM_024406|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr12_-_103151331_103151476	0.0209237	NKX2-3_NKX2-5.p2	AK077954|Trip11|109181|thyroid hormone receptor interactor 11	AK081763|Trip11|109181|thyroid hormone receptor interactor 11	AK014103|Trip11|109181|thyroid hormone receptor interactor 11	AK148294|Trip11|109181|thyroid hormone receptor interactor 11	AK012112|Trip11|109181|thyroid hormone receptor interactor 11	NM_028446|Trip11|109181|thyroid hormone receptor interactor 11	BC158098|Trip11|109181|thyroid hormone receptor interactor 11
mm9_v1_chr2_+_32087125_32087136	0.0208671	NKX2-3_NKX2-5.p2	AK161103|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chrX_-_163768423_163768472	0.0208072	NKX2-3_NKX2-5.p2	AF334943|Tlr7|170743|toll-like receptor 7	AF334942|Tlr7|170743|toll-like receptor 7	AK036549|Tlr7|170743|toll-like receptor 7	AK154906|Tlr7|170743|toll-like receptor 7	NM_133211|Tlr7|170743|toll-like receptor 7	AK156908|Tlr7|170743|toll-like receptor 7
mm9_v1_chr7_-_52965801_52965838	0.0207765	NKX2-3_NKX2-5.p2	AK198375|Sphk2|56632|sphingosine kinase 2	AK202851|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr5_-_114292548_114292630	0.0207687	NKX2-3_NKX2-5.p2	
mm9_v1_chr2_+_25264823_25264862	0.0206253	NKX2-3_NKX2-5.p2	
mm9_v1_chr8_+_34807688_34807718	0.0204711	NKX2-3_NKX2-5.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr1_-_170085342_170085390	0.0203959	NKX2-3_NKX2-5.p2	AK083616|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr10_-_36858671_36858801	0.020327	NKX2-3_NKX2-5.p2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr19_+_13439119_13439119	0.0197126	NKX2-3_NKX2-5.p2	NM_146691|Olfr1467|258686|olfactory receptor 1467
mm9_v1_chr1_-_174149989_174150025	0.0193521	NKX2-3_NKX2-5.p2	NM_009813|Casq1|12372|calsequestrin 1
mm9_v1_chr13_-_58494637_58494692	0.0183444	NKX2-3_NKX2-5.p2	AK207611|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K
mm9_v1_chr6_+_121195885_121196041	0.0179583	NKX2-3_NKX2-5.p2	AK151011|Usp18|24110|ubiquitin specific peptidase 18	AK151260|Usp18|24110|ubiquitin specific peptidase 18	AK151722|Usp18|24110|ubiquitin specific peptidase 18	NM_011909|Usp18|24110|ubiquitin specific peptidase 18	AK149772|Usp18|24110|ubiquitin specific peptidase 18	AK004296|Usp18|24110|ubiquitin specific peptidase 18	AK153312|Usp18|24110|ubiquitin specific peptidase 18	AK152034|Usp18|24110|ubiquitin specific peptidase 18	AK152574|Usp18|24110|ubiquitin specific peptidase 18	AF069502|Usp18|24110|ubiquitin specific peptidase 18	BC138562|Usp18|24110|ubiquitin specific peptidase 18	BC138577|Usp18|24110|ubiquitin specific peptidase 18
mm9_v1_chr2_-_92224258_92224292	0.0174514	NKX2-3_NKX2-5.p2	
mm9_v1_chr15_-_98728930_98728984	0.0166362	NKX2-3_NKX2-5.p2	BC062810|Dhh|13363|desert hedgehog	AK032466|Dhh|13363|desert hedgehog	AK033392|Dhh|13363|desert hedgehog	NM_007857|Dhh|13363|desert hedgehog
mm9_v1_chr9_-_123883398_123883524	0.0166219	NKX2-3_NKX2-5.p2	AK076275|Ccr1|12768|chemokine (C-C motif) receptor 1	AK031109|Ccr1|12768|chemokine (C-C motif) receptor 1	AK036690|Ccr1|12768|chemokine (C-C motif) receptor 1	NM_009912|Ccr1|12768|chemokine (C-C motif) receptor 1
mm9_v1_chr2_-_23904890_23904898	0.0163637	NKX2-3_NKX2-5.p2	BC033928|Hnmt|140483|histamine N-methyltransferase	AB070524|Hnmt|140483|histamine N-methyltransferase	AF297037|Hnmt|140483|histamine N-methyltransferase	NM_080462|Hnmt|140483|histamine N-methyltransferase
mm9_v1_chrM_+_7009_7016	0.0153067	NKX2-3_NKX2-5.p2	AF378830|COX2|17709|cytochrome c oxidase subunit II	AK131586|COX2|17709|cytochrome c oxidase subunit II
mm9_v1_chr14_+_32481114_32481230	0.0152842	NKX2-3_NKX2-5.p2	AK189055|Btd|26363|biotinidase
mm9_v1_chr12_-_119474010_119474093	0.0152662	NKX2-3_NKX2-5.p2	AK017738|Sp4|20688|trans-acting transcription factor 4
mm9_v1_chr4_+_126850123_126850181	0.0144988	NKX2-3_NKX2-5.p2	AK158868|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr9_+_32180002_32180181	0.0133669	NKX2-3_NKX2-5.p2	NM_019659|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	AK085262|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	AF012834|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1
mm9_v1_chr11_+_46268432_46268486	0.0129819	NKX2-3_NKX2-5.p2	AK148474|Havcr2|171285|hepatitis A virus cellular receptor 2	NM_134250|Havcr2|171285|hepatitis A virus cellular receptor 2	AF450241|Havcr2|171285|hepatitis A virus cellular receptor 2	AY553334|Havcr2|171285|hepatitis A virus cellular receptor 2	AK170775|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106851|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106852|Havcr2|171285|hepatitis A virus cellular receptor 2	AF399831|Havcr2|171285|hepatitis A virus cellular receptor 2
mm9_v1_chr1_+_37426061_37426065	0.0129795	NKX2-3_NKX2-5.p2	AK035867|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC120541|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144747|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144748|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_172971|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr5_-_122267654_122267839	0.0129673	NKX2-3_NKX2-5.p2	AK210164|Sh2b3|16923|SH2B adaptor protein 3	AK212257|Sh2b3|16923|SH2B adaptor protein 3
mm9_v1_chr7_-_34926055_34926067	0.0127676	NKX2-3_NKX2-5.p2	AK213025|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr11_-_50108981_50109027	0.0126285	NKX2-3_NKX2-5.p2	AK004422|Canx|12330|calnexin
mm9_v1_chr2_+_44967779_44967818	0.0120926	NKX2-3_NKX2-5.p2	BC065800|Gm13476|433424|predicted gene 13476	NM_001177395|Gm13476|433424|predicted gene 13476
mm9_v1_chr2_+_87642546_87642547	0.0116342	NKX2-3_NKX2-5.p2	BC140120|Olfr1143|258290|olfactory receptor 1143	BC140161|Olfr1143|258290|olfactory receptor 1143	BC140202|Olfr1143|258290|olfactory receptor 1143	NM_146293|Olfr1143|258290|olfactory receptor 1143
mm9_v1_chr5_-_37221812_37221913	0.0115535	NKX2-3_NKX2-5.p2	BC066211|Man2b2|17160|mannosidase 2, alpha B2	AK004900|Man2b2|17160|mannosidase 2, alpha B2	AK040388|Man2b2|17160|mannosidase 2, alpha B2	AK151873|Man2b2|17160|mannosidase 2, alpha B2	AK152349|Man2b2|17160|mannosidase 2, alpha B2	AB006458|Man2b2|17160|mannosidase 2, alpha B2	AK079969|Man2b2|17160|mannosidase 2, alpha B2	AK165376|Man2b2|17160|mannosidase 2, alpha B2	NM_008550|Man2b2|17160|mannosidase 2, alpha B2
mm9_v1_chr1_+_174437040_174437140	0.011161	NKX2-3_NKX2-5.p2	AK019231|Tagln2|21346|transgelin 2
mm9_v1_chr3_+_90346956_90347018	0.0104663	NKX2-3_NKX2-5.p2	AK002991|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr12_+_101348348_101348406	0.00987538	NKX2-3_NKX2-5.p2	AK161641|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK161723|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK133926|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK088411|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK148906|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	BC003860|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK166783|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK169015|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1
mm9_v1_chr9_+_56266618_56266679	0.00949135	NKX2-3_NKX2-5.p2	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr16_+_10488270_10488391	0.00918826	NKX2-3_NKX2-5.p2	AK040723|Ciita|12265|class II transactivator	AK155184|Ciita|12265|class II transactivator	AF042158|Ciita|12265|class II transactivator	AK153609|Ciita|12265|class II transactivator	NM_007575|Ciita|12265|class II transactivator	U60653|Ciita|12265|class II transactivator	BC107330|Ciita|12265|class II transactivator	BC107331|Ciita|12265|class II transactivator
mm9_v1_chr3_+_59835700_59835727	0.00902407	NKX2-3_NKX2-5.p2	NM_023383|Aadac|67758|arylacetamide deacetylase (esterase)	AK008244|Aadac|67758|arylacetamide deacetylase (esterase)	BC054823|Aadac|67758|arylacetamide deacetylase (esterase)	BC019999|Aadac|67758|arylacetamide deacetylase (esterase)
mm9_v1_chr8_-_75091078_75091201	0.00896219	NKX2-3_NKX2-5.p2	
mm9_v1_chr16_-_4213389_4213406	0.00866299	NKX2-3_NKX2-5.p2	BC072594|Crebbp|12914|CREB binding protein	NM_001025432|Crebbp|12914|CREB binding protein	BC010297|Crebbp|12914|CREB binding protein
mm9_v1_chr11_-_120489993_120490076	0.00865981	NKX2-3_NKX2-5.p2	AK038934|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	AK083165|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm9_v1_chr4_-_11131570_11131684	0.00854882	NKX2-3_NKX2-5.p2	AK050920|Ints8|72656|integrator complex subunit 8
mm9_v1_chr2_+_105744791_105744850	0.00845429	NKX2-3_NKX2-5.p2	AK005356|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011278|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	NM_028260|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011382|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK078300|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011466|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK015978|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011618|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011872|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011420|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK135670|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK009570|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK010075|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK012181|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK168202|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	BC008259|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
mm9_v1_chr9_+_92502908_92503003	0.00763861	NKX2-3_NKX2-5.p2	AK218100|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
mm9_v1_chr5_-_63157309_63157425	0.00760651	NKX2-3_NKX2-5.p2	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr16_-_38445988_38446143	0.00697	NKX2-3_NKX2-5.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr16_+_56477956_56478012	0.00598017	NKX2-3_NKX2-5.p2	AK086582|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014399|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014422|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014423|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014424|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_178790|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK041192|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK043879|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK051214|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC145388|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC150763|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190339|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190340|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190341|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190342|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190343|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein
mm9_v1_chr16_-_19983049_19983121	0.00484826	NKX2-3_NKX2-5.p2	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr8_-_3625510_3625544	0.00449913	NKX2-3_NKX2-5.p2	BC014694|Pcp2|18545|Purkinje cell protein 2 (L7)	BC028982|Pcp2|18545|Purkinje cell protein 2 (L7)	BC024853|Pcp2|18545|Purkinje cell protein 2 (L7)	EU164759|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129803|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr8_+_86520110_86520238	0.00444864	NKX2-3_NKX2-5.p2	AK131888|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha
mm9_v1_chr2_+_38441497_38441644	0.00394397	NKX2-3_NKX2-5.p2	AK214670|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK208733|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6
mm9_v1_chr3_-_38349112_38349206	0.00323091	NKX2-3_NKX2-5.p2	BC051515|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr1_-_146024404_146024501	0.00310749	NKX2-3_NKX2-5.p2	AF498319|Rgs13|246709|regulator of G-protein signaling 13	BC049624|Rgs13|246709|regulator of G-protein signaling 13	AK043268|Rgs13|246709|regulator of G-protein signaling 13	NM_153171|Rgs13|246709|regulator of G-protein signaling 13
mm9_v1_chr5_-_135101318_135101328	0.00306239	NKX2-3_NKX2-5.p2	AK188319|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr18_-_35097374_35097402	0.00284202	NKX2-3_NKX2-5.p2	AK028123|Hspa9|15526|heat shock protein 9
mm9_v1_chr3_-_88214215_88214225	0.00279764	NKX2-3_NKX2-5.p2	BC034333|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr4_-_128639595_128639690	0.0025956	NKX2-3_NKX2-5.p2	BC138973|Adc|242669|arginine decarboxylase	BC138974|Adc|242669|arginine decarboxylase	NM_172875|Adc|242669|arginine decarboxylase	BC065772|Adc|242669|arginine decarboxylase	BC028775|Adc|242669|arginine decarboxylase	AK047522|Adc|242669|arginine decarboxylase	AK077201|Adc|242669|arginine decarboxylase	AK080568|Adc|242669|arginine decarboxylase	AK154564|Adc|242669|arginine decarboxylase	AK148717|Adc|242669|arginine decarboxylase
mm9_v1_chr10_-_80170037_80170073	0.00224498	NKX2-3_NKX2-5.p2	AK208513|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr5_+_123939313_123939335	0.00223965	NKX2-3_NKX2-5.p2	BC150919|Lrrc43|381741|leucine rich repeat containing 43	AK133051|Lrrc43|381741|leucine rich repeat containing 43	NM_001033461|Lrrc43|381741|leucine rich repeat containing 43	AK167318|Lrrc43|381741|leucine rich repeat containing 43	AK167729|Lrrc43|381741|leucine rich repeat containing 43
mm9_v1_chr8_-_26212203_26212230	0.00147559	NKX2-3_NKX2-5.p2	BC010215|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AF286161|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr12_-_105011807_105011857	0.00144763	NKX2-3_NKX2-5.p2	NM_009246|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr14_-_70107206_70107408	0.00133913	NKX2-3_NKX2-5.p2	BC052536|R3hcc1|71843|R3H domain and coiled-coil containing 1	BC059860|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK032854|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK156843|R3hcc1|71843|R3H domain and coiled-coil containing 1	NM_001146012|R3hcc1|71843|R3H domain and coiled-coil containing 1
mm9_v1_chr1_-_72747112_72747152	0.000248711	NKX2-3_NKX2-5.p2	BC132415|Ankar|319695|ankyrin and armadillo repeat containing	BC145253|Ankar|319695|ankyrin and armadillo repeat containing	AK030065|Ankar|319695|ankyrin and armadillo repeat containing	NM_176980|Ankar|319695|ankyrin and armadillo repeat containing	AK077036|Ankar|319695|ankyrin and armadillo repeat containing
