mm9_v1_chrM_+_14143_14189	8.93592	NKX3-1.p2	
mm9_v1_chrM_+_3913_4410	5.1913	NKX3-1.p2	
mm9_v1_chrM_+_3844_3864	4.27835	NKX3-1.p2	
mm9_v1_chrM_+_3320_3438	4.12926	NKX3-1.p2	
mm9_v1_chr7_-_29678773_29678890	3.48199	NKX3-1.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chrM_+_13998_14016	2.9779	NKX3-1.p2	
mm9_v1_chr12_+_110798661_110798666	2.92913	NKX3-1.p2	AK019916|Meg3|17263|maternally expressed 3
mm9_v1_chr1_-_180264067_180264092	2.43277	NKX3-1.p2	AK190289|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr1_-_88253690_88253764	2.31192	NKX3-1.p2	AK050958|Ncl|17975|nucleolin
mm9_v1_chrM_+_409_428	2.24209	NKX3-1.p2	
mm9_v1_chrM_+_1091_1314	2.18319	NKX3-1.p2	
mm9_v1_chrM_+_2750_2751	2.14729	NKX3-1.p2	
mm9_v1_chrM_+_13543_13577	2.13951	NKX3-1.p2	
mm9_v1_chrM_+_13320_13486	2.07642	NKX3-1.p2	
mm9_v1_chr15_-_81222718_81222746	1.74256	NKX3-1.p2	AK205921|St13|70356|suppression of tumorigenicity 13
mm9_v1_chr1_+_19198994_19199078	1.67635	NKX3-1.p2	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr4_+_45310018_45310039	1.61887	NKX3-1.p2	AK011746|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	AK030465|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	NM_027266|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3
mm9_v1_chr11_-_69182891_69182931	1.61234	NKX3-1.p2	AK045449|Chd3|216848|chromodomain helicase DNA binding protein 3	NM_146019|Chd3|216848|chromodomain helicase DNA binding protein 3
mm9_v1_chr2_+_155212676_155212898	1.55696	NKX3-1.p2	AK186401|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK195529|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK196103|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212608|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr9_-_71743854_71743929	1.53072	NKX3-1.p2	AK135376|Tcf12|21406|transcription factor 12	AK132002|Tcf12|21406|transcription factor 12	AK133958|Tcf12|21406|transcription factor 12	AK078415|Tcf12|21406|transcription factor 12
mm9_v1_chrM_-_13886_13905	1.51462	NKX3-1.p2	
mm9_v1_chr15_-_56526052_56526100	1.39827	NKX3-1.p2	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr2_+_91386476_91386497	1.36545	NKX3-1.p2	BC017140|Ckap5|75786|cytoskeleton associated protein 5	BC089032|Ckap5|75786|cytoskeleton associated protein 5	NM_001165989|Ckap5|75786|cytoskeleton associated protein 5	NM_029437|Ckap5|75786|cytoskeleton associated protein 5	BC138334|Ckap5|75786|cytoskeleton associated protein 5	BC096422|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr6_+_33922645_33922791	1.36117	NKX3-1.p2	
mm9_v1_chr2_+_152495244_152495317	1.33539	NKX3-1.p2	AK051151|H13|14950|histocompatibility 13	AK050664|H13|14950|histocompatibility 13	AK171790|H13|14950|histocompatibility 13	AF515662|H13|14950|histocompatibility 13
mm9_v1_chr4_+_103291963_103292084	1.31145	NKX3-1.p2	
mm9_v1_chr17_-_35971913_35971974	1.26614	NKX3-1.p2	AK188748|Tubb5|22154|tubulin, beta 5	AK196888|Tubb5|22154|tubulin, beta 5
mm9_v1_chrM_+_11741_11742	1.26589	NKX3-1.p2	AK140457|ND5|17721|NADH dehydrogenase subunit 5
mm9_v1_chr1_-_42749940_42749978	1.26046	NKX3-1.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr9_+_104472090_104472120	1.24984	NKX3-1.p2	AK043692|Cpne4|74020|copine IV	AK014396|Cpne4|74020|copine IV	BC043087|Cpne4|74020|copine IV	BC063081|Cpne4|74020|copine IV	NM_028719|Cpne4|74020|copine IV
mm9_v1_chr3_+_75878452_75878519	1.22256	NKX3-1.p2	AK140611|Fstl5|213262|follistatin-like 5	AK033652|Fstl5|213262|follistatin-like 5	AK081152|Fstl5|213262|follistatin-like 5	AF374460|Fstl5|213262|follistatin-like 5	BC075640|Fstl5|213262|follistatin-like 5	NM_178673|Fstl5|213262|follistatin-like 5
mm9_v1_chr2_+_37372112_37372145	1.20734	NKX3-1.p2	AK141999|Gpr21|338346|G protein-coupled receptor 21	AK048682|Gpr21|338346|G protein-coupled receptor 21	AK139361|Gpr21|338346|G protein-coupled receptor 21	NM_177383|Gpr21|338346|G protein-coupled receptor 21
mm9_v1_chrY_-_582062_582201	1.15921	NKX3-1.p2	AK162410|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK220463|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK155922|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AF057367|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	BC053061|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK043154|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	NM_009484|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142344|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142512|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm9_v1_chr8_-_55809700_55809720	1.15786	NKX3-1.p2	AK013889|Wdr17|244484|WD repeat domain 17	AK020995|Wdr17|244484|WD repeat domain 17	AK044241|Wdr17|244484|WD repeat domain 17	NM_001172152|Wdr17|244484|WD repeat domain 17
mm9_v1_chr10_+_18189773_18189786	1.08762	NKX3-1.p2	BC030842|Nhsl1|215819|NHS-like 1	NM_001163592|Nhsl1|215819|NHS-like 1
mm9_v1_chrM_-_622_663	1.08641	NKX3-1.p2	
mm9_v1_chr13_-_64376186_64376295	0.96101	NKX3-1.p2	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr6_+_5340417_5340708	0.955909	NKX3-1.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr13_+_14722530_14722557	0.922565	NKX3-1.p2	AK030506|AW209491|105351|expressed sequence AW209491	AK050507|AW209491|105351|expressed sequence AW209491	AK077649|AW209491|105351|expressed sequence AW209491
mm9_v1_chr1_-_77511653_77511664	0.920161	NKX3-1.p2	AK028509|Epha4|13838|Eph receptor A4	AK147698|Epha4|13838|Eph receptor A4	AK132203|Epha4|13838|Eph receptor A4	NM_007936|Epha4|13838|Eph receptor A4	S57168|Epha4|13838|Eph receptor A4	X65138|Epha4|13838|Eph receptor A4
mm9_v1_chr11_+_77499638_77499656	0.910363	NKX3-1.p2	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr2_-_24618566_24618692	0.884832	NKX3-1.p2	AF042317|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit	NM_001042528|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit	NM_007579|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit	U04999|Cacna1b|12287|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm9_v1_chrM_+_11812_11845	0.864747	NKX3-1.p2	
mm9_v1_chr7_+_107789414_107789679	0.856596	NKX3-1.p2	AK191812|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr1_-_128634766_128634787	0.848051	NKX3-1.p2	AK083792|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr7_+_107685608_107685745	0.807417	NKX3-1.p2	AK161506|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	NM_183270|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK019895|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK088786|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116995|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116997|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC096605|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK008883|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC048574|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8
mm9_v1_chr11_-_62206116_62206160	0.799208	NKX3-1.p2	AK137695|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr10_+_101621491_101621538	0.795732	NKX3-1.p2	NM_001162368|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	AK015051|4930402I19Rik|73798|RIKEN cDNA 4930402I19 gene
mm9_v1_chr2_-_174289526_174289563	0.789851	NKX3-1.p2	BC046612|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
mm9_v1_chr12_+_104626888_104626975	0.788239	NKX3-1.p2	NM_026580|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK076336|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	NM_001177841|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC049551|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK016449|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK160505|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK019830|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006346|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006469|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006054|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC052409|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2
mm9_v1_chr5_+_22988226_22988243	0.782759	NKX3-1.p2	
mm9_v1_chr12_+_30219982_30220081	0.775316	NKX3-1.p2	AK049624|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr8_-_47292973_47292977	0.770153	NKX3-1.p2	AK186988|Slc25a4|11739|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm9_v1_chr11_+_104189978_104190032	0.765343	NKX3-1.p2	AK135147|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr12_-_42212538_42212554	0.762751	NKX3-1.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chrX_-_147091911_147092125	0.756207	NKX3-1.p2	AK047777|Tro|56191|trophinin	AB036783|Tro|56191|trophinin	AF288605|Tro|56191|trophinin	AF288606|Tro|56191|trophinin	NM_001002272|Tro|56191|trophinin	NM_019548|Tro|56191|trophinin	BC075630|Tro|56191|trophinin
mm9_v1_chr2_-_65405546_65405588	0.73927	NKX3-1.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr2_+_69058005_69058054	0.711395	NKX3-1.p2	AK148450|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	Z47787|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	BC111905|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	AK148465|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	NM_021331|G6pc2|14378|glucose-6-phosphatase, catalytic, 2
mm9_v1_chr10_+_126921038_126921212	0.707172	NKX3-1.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr8_-_39724524_39724561	0.698624	NKX3-1.p2	AK048960|Sgcz|244431|sarcoglycan zeta	AK136779|Sgcz|244431|sarcoglycan zeta	NM_145841|Sgcz|244431|sarcoglycan zeta
mm9_v1_chr12_+_110800212_110800261	0.682857	NKX3-1.p2	AK018142|Meg3|17263|maternally expressed 3
mm9_v1_chr7_-_110976438_110976438	0.679099	NKX3-1.p2	M10524|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr9_+_3335139_3335230	0.656829	NKX3-1.p2	AK160783|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	BC050863|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	NM_026303|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr13_-_74754745_74754770	0.632743	NKX3-1.p2	
mm9_v1_chr8_+_115093942_115094124	0.619947	NKX3-1.p2	BC034628|Cntnap4|170571|contactin associated protein-like 4	NM_130457|Cntnap4|170571|contactin associated protein-like 4	AK142816|Cntnap4|170571|contactin associated protein-like 4	AK081891|Cntnap4|170571|contactin associated protein-like 4	AK053611|Cntnap4|170571|contactin associated protein-like 4	AK042607|Cntnap4|170571|contactin associated protein-like 4	AK173255|Cntnap4|170571|contactin associated protein-like 4	AF333770|Cntnap4|170571|contactin associated protein-like 4
mm9_v1_chr13_+_14722520_14722529	0.618195	NKX3-1.p2	AK167401|AW209491|105351|expressed sequence AW209491	NM_134067|AW209491|105351|expressed sequence AW209491
mm9_v1_chr3_-_115832327_115832378	0.613603	NKX3-1.p2	U12884|Vcam1|22329|vascular cell adhesion molecule 1	M84487|Vcam1|22329|vascular cell adhesion molecule 1	L08431|Vcam1|22329|vascular cell adhesion molecule 1	BC011159|Vcam1|22329|vascular cell adhesion molecule 1	AK016465|Vcam1|22329|vascular cell adhesion molecule 1	AK030195|Vcam1|22329|vascular cell adhesion molecule 1	AK143401|Vcam1|22329|vascular cell adhesion molecule 1	AK162954|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr3_-_115956312_115956401	0.600803	NKX3-1.p2	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chr18_+_37133455_37133703	0.598467	NKX3-1.p2	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chrM_+_67_138	0.597325	NKX3-1.p2	
mm9_v1_chr6_-_90612275_90612375	0.59485	NKX3-1.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr10_-_80693488_80693567	0.590026	NKX3-1.p2	AY349150|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	BC048903|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038990|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	NM_178662|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK039411|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK028298|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038483|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK162959|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK086723|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)
mm9_v1_chr9_-_52484889_52484906	0.578974	NKX3-1.p2	AK053489|AI593442|330941|expressed sequence AI593442
mm9_v1_chr10_-_102698899_102698955	0.544661	NKX3-1.p2	AK158531|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	BC051400|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	AK015687|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	NM_001163559|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	NM_029134|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1
mm9_v1_chr2_+_163899842_163899948	0.542611	NKX3-1.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chrM_-_14069_14070	0.529238	NKX3-1.p2	AK138272|ND6|17722|NADH dehydrogenase subunit 6	AK140300|ND6|17722|NADH dehydrogenase subunit 6
mm9_v1_chr8_+_73282270_73282383	0.524543	NKX3-1.p2	
mm9_v1_chr6_+_42236683_42236858	0.517847	NKX3-1.p2	AK036735|Clcn1|12723|chloride channel 1	NM_013491|Clcn1|12723|chloride channel 1	BC114336|Clcn1|12723|chloride channel 1	AY046403|Clcn1|12723|chloride channel 1	AY046404|Clcn1|12723|chloride channel 1
mm9_v1_chr3_-_65940346_65940359	0.50949	NKX3-1.p2	AB085189|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AK013398|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_028357|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chr6_-_119913623_119913750	0.503381	NKX3-1.p2	BC146009|Wnk1|232341|WNK lysine deficient protein kinase 1	BC146011|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr11_-_54533036_54533041	0.497614	NKX3-1.p2	
mm9_v1_chr3_+_13946371_13946410	0.491106	NKX3-1.p2	NM_001163329|Ralyl|76897|RALY RNA binding protein-like	NM_001163330|Ralyl|76897|RALY RNA binding protein-like	AK038465|Ralyl|76897|RALY RNA binding protein-like	BC052358|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr4_-_134409149_134409155	0.479056	NKX3-1.p2	AK038972|Tmem57|66146|transmembrane protein 57	BC054769|Tmem57|66146|transmembrane protein 57
mm9_v1_chrM_+_1550_2087	0.478919	NKX3-1.p2	
mm9_v1_chr2_+_162760505_162760606	0.472979	NKX3-1.p2	
mm9_v1_chr16_-_85120798_85120921	0.472917	NKX3-1.p2	AK194233|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr11_-_100576628_100576692	0.468979	NKX3-1.p2	
mm9_v1_chr9_+_59523404_59523469	0.468642	NKX3-1.p2	
mm9_v1_chr7_-_125832234_125832286	0.466212	NKX3-1.p2	
mm9_v1_chr17_+_78907402_78907511	0.461403	NKX3-1.p2	AK158117|Vit|74199|vitrin	NM_001197028|Vit|74199|vitrin	NM_028813|Vit|74199|vitrin	BC034120|Vit|74199|vitrin	AF454755|Vit|74199|vitrin	AK013193|Vit|74199|vitrin	AK051606|Vit|74199|vitrin
mm9_v1_chr4_-_134409044_134409108	0.460627	NKX3-1.p2	AY364165|Tmem57|66146|transmembrane protein 57	BC054355|Tmem57|66146|transmembrane protein 57	BC010714|Tmem57|66146|transmembrane protein 57
mm9_v1_chr8_+_56040193_56040201	0.458658	NKX3-1.p2	AK081877|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr5_+_122135788_122135908	0.456115	NKX3-1.p2	AK215013|Brap|72399|BRCA1 associated protein	AK197500|Brap|72399|BRCA1 associated protein
mm9_v1_chr13_-_84204320_84204376	0.452417	NKX3-1.p2	AK082072|LOC553095|553095|hypothetical LOC553095
mm9_v1_chr17_-_45707358_45707448	0.451657	NKX3-1.p2	AK177162|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr5_-_101103051_101103304	0.444203	NKX3-1.p2	BC080773|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)	AK009092|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)	NM_027978|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)
mm9_v1_chr2_+_13500271_13500328	0.443331	NKX3-1.p2	AK181650|Vim|22352|vimentin	AK196009|Vim|22352|vimentin	AK197870|Vim|22352|vimentin	AK203908|Vim|22352|vimentin
mm9_v1_chr9_-_78326946_78326968	0.441904	NKX3-1.p2	BC099609|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr2_-_174289569_174289618	0.441236	NKX3-1.p2	BC024339|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AY341882|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK160387|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK007752|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK007809|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK012444|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	AK010661|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	NM_025983|Atp5e|67126|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
mm9_v1_chr1_-_180260325_180260384	0.438757	NKX3-1.p2	
mm9_v1_chr10_+_126503214_126503242	0.437185	NKX3-1.p2	AK012202|Cdk4|12567|cyclin-dependent kinase 4
mm9_v1_chr11_+_117693543_117693586	0.433735	NKX3-1.p2	AK018563|Afmid|71562|arylformamidase
mm9_v1_chr2_-_168478155_168478229	0.428442	NKX3-1.p2	AK203030|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr1_+_66368571_66368671	0.425666	NKX3-1.p2	AK046341|Mtap2|17756|microtubule-associated protein 2	AK086484|Mtap2|17756|microtubule-associated protein 2	M21041|Mtap2|17756|microtubule-associated protein 2	AK141458|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr10_+_105907394_105907408	0.424021	NKX3-1.p2	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr8_-_47292863_47292905	0.422963	NKX3-1.p2	
mm9_v1_chr3_+_145541951_145541971	0.419443	NKX3-1.p2	
mm9_v1_chr5_-_134718500_134718616	0.416128	NKX3-1.p2	AK183312|Gtf2i|14886|general transcription factor II I	AK211276|Gtf2i|14886|general transcription factor II I
mm9_v1_chr10_+_42580317_42580598	0.415904	NKX3-1.p2	NM_172938|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AF397911|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK034171|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	BC043310|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK047972|Scml4|268297|sex comb on midleg-like 4 (Drosophila)
mm9_v1_chr4_-_136891931_136891995	0.412095	NKX3-1.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr2_-_69551514_69551609	0.409663	NKX3-1.p2	AK030411|Fastkd1|320720|FAST kinase domains 1	AK083186|Fastkd1|320720|FAST kinase domains 1
mm9_v1_chr2_-_37502738_37502804	0.400313	NKX3-1.p2	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr6_-_51416921_51416984	0.390229	NKX3-1.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr10_+_20059547_20059574	0.389372	NKX3-1.p2	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr5_-_114292851_114293254	0.388581	NKX3-1.p2	AK201602|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr19_-_41674337_41674343	0.384413	NKX3-1.p2	
mm9_v1_chr4_-_118951578_118951709	0.37564	NKX3-1.p2	AK213628|Ybx1|22608|Y box protein 1	AK181881|Ybx1|22608|Y box protein 1	AK197905|Ybx1|22608|Y box protein 1
mm9_v1_chr12_+_17277227_17277235	0.372618	NKX3-1.p2	AK192703|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr4_+_109015660_109015680	0.369723	NKX3-1.p2	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr18_+_37127284_37127409	0.369515	NKX3-1.p2	D86917|Pcdha6|12937|protocadherin alpha 6	BC150815|Pcdha6|12937|protocadherin alpha 6	BC150816|Pcdha6|12937|protocadherin alpha 6	BC054813|Pcdha6|12937|protocadherin alpha 6	AY013764|Pcdha6|12937|protocadherin alpha 6	NM_007767|Pcdha6|12937|protocadherin alpha 6
mm9_v1_chr13_+_14722494_14722518	0.36833	NKX3-1.p2	AK169400|AW209491|105351|expressed sequence AW209491	NM_001104646|AW209491|105351|expressed sequence AW209491
mm9_v1_chr16_-_16829386_16829548	0.367468	NKX3-1.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr4_+_132754604_132754753	0.366807	NKX3-1.p2	
mm9_v1_chr11_-_50745128_50745136	0.364775	NKX3-1.p2	AK148756|Zfp354b|27274|zinc finger protein 354B	NM_013744|Zfp354b|27274|zinc finger protein 354B
mm9_v1_chr17_+_13208071_13208135	0.36327	NKX3-1.p2	AK206580|Sod2|20656|superoxide dismutase 2, mitochondrial
mm9_v1_chr3_-_108707417_108707441	0.360576	NKX3-1.p2	AK007374|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm9_v1_chr11_-_97023157_97023169	0.359749	NKX3-1.p2	BC004096|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr11_-_62190182_62190262	0.342314	NKX3-1.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr13_-_108516475_108516490	0.341219	NKX3-1.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr19_-_5797068_5797184	0.341036	NKX3-1.p2	
mm9_v1_chr16_+_59302980_59302980	0.338449	NKX3-1.p2	BC128025|Olfr203|258479|olfactory receptor 203	NM_146486|Olfr203|258479|olfactory receptor 203
mm9_v1_chr15_+_92427539_92427556	0.338326	NKX3-1.p2	NM_001164594|Pdzrn4|239618|PDZ domain containing RING finger 4	AK135524|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr11_+_87862035_87862148	0.334521	NKX3-1.p2	AK187083|Srsf1|110809|serine/arginine-rich splicing factor 1
mm9_v1_chr13_-_81772121_81772142	0.334238	NKX3-1.p2	BC080679|Gpr98|110789|G protein-coupled receptor 98	AB086166|Gpr98|110789|G protein-coupled receptor 98	AB086167|Gpr98|110789|G protein-coupled receptor 98	AK053565|Gpr98|110789|G protein-coupled receptor 98	AF435926|Gpr98|110789|G protein-coupled receptor 98	NM_054053|Gpr98|110789|G protein-coupled receptor 98
mm9_v1_chr4_-_109960078_109960115	0.329073	NKX3-1.p2	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr4_+_102262447_102262471	0.32693	NKX3-1.p2	AK051102|Pde4b|18578|phosphodiesterase 4B, cAMP specific	NM_001177981|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC071259|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr19_-_8860725_8860906	0.325276	NKX3-1.p2	BC028647|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK144881|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	BC020299|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_146092|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK077149|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_001177798|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr10_-_90612412_90612509	0.322944	NKX3-1.p2	AK208952|Tmpo|21917|thymopoietin
mm9_v1_chr17_-_35971652_35971809	0.321368	NKX3-1.p2	AK080778|Tubb5|22154|tubulin, beta 5	AK088137|Tubb5|22154|tubulin, beta 5
mm9_v1_chr11_-_69229653_69229709	0.315663	NKX3-1.p2	BC075632|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr2_+_163051189_163051200	0.314873	NKX3-1.p2	NM_001098799|Tox2|269389|TOX high mobility group box family member 2
mm9_v1_chr1_-_192803077_192803174	0.308746	NKX3-1.p2	BC024141|Vash2|226841|vasohibin 2	AK163193|Vash2|226841|vasohibin 2	AK045261|Vash2|226841|vasohibin 2	AK078596|Vash2|226841|vasohibin 2
mm9_v1_chr7_-_140179678_140180024	0.308512	NKX3-1.p2	AK187460|Ctbp2|13017|C-terminal binding protein 2	AK161077|Ctbp2|13017|C-terminal binding protein 2	AK198744|Ctbp2|13017|C-terminal binding protein 2	AK199198|Ctbp2|13017|C-terminal binding protein 2	AK201071|Ctbp2|13017|C-terminal binding protein 2	AK217772|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr11_-_41814008_41814185	0.304863	NKX3-1.p2	M86572|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	BC031762|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	M62374|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_008073|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK034338|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr17_-_34251399_34251468	0.296306	NKX3-1.p2	AK188169|Brd2|14312|bromodomain containing 2
mm9_v1_chr18_+_63112372_63112770	0.295752	NKX3-1.p2	AK190259|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191643|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191811|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191857|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK192996|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK198042|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK214514|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AB023957|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC065780|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1
mm9_v1_chrM_+_7009_7016	0.29407	NKX3-1.p2	AF378830|COX2|17709|cytochrome c oxidase subunit II	AK131586|COX2|17709|cytochrome c oxidase subunit II
mm9_v1_chr14_+_27473359_27473404	0.279681	NKX3-1.p2	AK206427|Arf4|11843|ADP-ribosylation factor 4	AK210624|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr2_+_155576943_155577133	0.276931	NKX3-1.p2	NM_011171|Procr|19124|protein C receptor, endothelial	AK167302|Procr|19124|protein C receptor, endothelial	X63748|Procr|19124|protein C receptor, endothelial	L39017|Procr|19124|protein C receptor, endothelial	BC028755|Procr|19124|protein C receptor, endothelial	AK136541|Procr|19124|protein C receptor, endothelial	CT010175|Procr|19124|protein C receptor, endothelial
mm9_v1_chr8_-_3154851_3154868	0.272675	NKX3-1.p2	AK085344|Insr|16337|insulin receptor
mm9_v1_chr18_+_37105758_37105860	0.272352	NKX3-1.p2	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr1_-_53409415_53409595	0.272073	NKX3-1.p2	BC013617|Asnsd1|70396|asparagine synthetase domain containing 1	AK207754|Asnsd1|70396|asparagine synthetase domain containing 1	AK214374|Asnsd1|70396|asparagine synthetase domain containing 1	AK209578|Asnsd1|70396|asparagine synthetase domain containing 1	AK076793|Asnsd1|70396|asparagine synthetase domain containing 1	AK008875|Asnsd1|70396|asparagine synthetase domain containing 1	AK034746|Asnsd1|70396|asparagine synthetase domain containing 1	AK154984|Asnsd1|70396|asparagine synthetase domain containing 1	AK170510|Asnsd1|70396|asparagine synthetase domain containing 1	AK050045|Asnsd1|70396|asparagine synthetase domain containing 1	AK155030|Asnsd1|70396|asparagine synthetase domain containing 1	AK168103|Asnsd1|70396|asparagine synthetase domain containing 1	AK049194|Asnsd1|70396|asparagine synthetase domain containing 1	NM_133728|Asnsd1|70396|asparagine synthetase domain containing 1	AK031295|Asnsd1|70396|asparagine synthetase domain containing 1	AK168534|Asnsd1|70396|asparagine synthetase domain containing 1
mm9_v1_chr2_+_162760216_162760271	0.271135	NKX3-1.p2	BC029312|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr9_+_120868808_120869094	0.269022	NKX3-1.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr1_-_72583137_72583137	0.266539	NKX3-1.p2	BC098191|March4|381270|membrane-associated ring finger (C3HC4) 4	NM_001045533|March4|381270|membrane-associated ring finger (C3HC4) 4
mm9_v1_chr15_-_76983985_76984241	0.264903	NKX3-1.p2	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr2_+_80193710_80193811	0.263026	NKX3-1.p2	
mm9_v1_chr11_-_4987973_4988127	0.262057	NKX3-1.p2	AK178351|Ewsr1|14030|Ewing sarcoma breakpoint region 1
mm9_v1_chr17_-_87665228_87665308	0.261254	NKX3-1.p2	AK077139|Mcfd2|193813|multiple coagulation factor deficiency 2	AK141599|Mcfd2|193813|multiple coagulation factor deficiency 2	AF475283|Mcfd2|193813|multiple coagulation factor deficiency 2	AK151803|Mcfd2|193813|multiple coagulation factor deficiency 2	NM_139295|Mcfd2|193813|multiple coagulation factor deficiency 2	NM_176808|Mcfd2|193813|multiple coagulation factor deficiency 2
mm9_v1_chr8_-_108462291_108462291	0.261221	NKX3-1.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr11_-_73661624_73661624	0.258471	NKX3-1.p2	NM_147008|Olfr393|259010|olfactory receptor 393
mm9_v1_chr4_+_21801372_21801440	0.258097	NKX3-1.p2	AK035634|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr10_-_8665041_8665100	0.258017	NKX3-1.p2	
mm9_v1_chr13_+_51245730_51245816	0.25667	NKX3-1.p2	
mm9_v1_chr7_-_149069070_149069207	0.251966	NKX3-1.p2	AK049198|Tollip|54473|toll interacting protein
mm9_v1_chr8_+_97197870_97198051	0.250473	NKX3-1.p2	AK185594|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK195499|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205549|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK207967|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK212239|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK214075|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK216087|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK218146|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK220110|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK206178|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK190102|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205025|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK005851|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr11_-_100579201_100579275	0.248299	NKX3-1.p2	
mm9_v1_chr1_+_66368409_66368422	0.246759	NKX3-1.p2	AK079618|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr1_+_44040367_44040379	0.243024	NKX3-1.p2	AK214518|Tpp2|22019|tripeptidyl peptidase II
mm9_v1_chrX_-_100381973_100382006	0.242977	NKX3-1.p2	X92352|Nap1l2|17954|nucleosome assembly protein 1-like 2	NM_008671|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr15_+_12082671_12082674	0.242261	NKX3-1.p2	AK158938|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr16_+_20651724_20651896	0.238518	NKX3-1.p2	NM_134101|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK150374|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK151588|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK152007|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK152970|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK159756|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK159815|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK167995|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK167909|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC027767|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK168131|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC027388|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK166816|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK167326|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK168398|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK169867|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK146482|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK159636|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK168543|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK159098|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK167774|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK167786|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC021508|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC024058|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC027822|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC024830|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC028851|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC033325|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	BC023049|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK180842|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK212329|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	AK215063|Psmd2|21762|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
mm9_v1_chr3_+_90145575_90145575	0.235266	NKX3-1.p2	AF411837|Gatad2b|229542|GATA zinc finger domain containing 2B	BC130262|Gatad2b|229542|GATA zinc finger domain containing 2B	NM_139304|Gatad2b|229542|GATA zinc finger domain containing 2B
mm9_v1_chr17_-_85461840_85461859	0.234993	NKX3-1.p2	AK019367|Prepl|213760|prolyl endopeptidase-like
mm9_v1_chr3_-_10208575_10208582	0.232765	NKX3-1.p2	AK003143|Fabp4|11770|fatty acid binding protein 4, adipocyte	AK088535|Fabp4|11770|fatty acid binding protein 4, adipocyte	NM_024406|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr10_-_116494883_116494953	0.229464	NKX3-1.p2	AK205966|Cct2|12461|chaperonin containing Tcp1, subunit 2 (beta)
mm9_v1_chr18_+_38611212_38611226	0.226124	NKX3-1.p2	
mm9_v1_chr9_-_39411708_39411856	0.226032	NKX3-1.p2	AK049098|AW551984|244810|expressed sequence AW551984	NM_178737|AW551984|244810|expressed sequence AW551984	BC061211|AW551984|244810|expressed sequence AW551984
mm9_v1_chr4_+_137762192_137762206	0.222944	NKX3-1.p2	AK005120|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3
mm9_v1_chr3_-_146394874_146394956	0.222513	NKX3-1.p2	AK204254|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr6_-_85019497_85019518	0.221688	NKX3-1.p2	AK144547|Exoc6b|75914|exocyst complex component 6B	NM_177077|Exoc6b|75914|exocyst complex component 6B
mm9_v1_chr17_-_31266539_31266557	0.220501	NKX3-1.p2	BC011042|Tff3|21786|trefoil factor 3, intestinal	AK008538|Tff3|21786|trefoil factor 3, intestinal	D38410|Tff3|21786|trefoil factor 3, intestinal	NM_011575|Tff3|21786|trefoil factor 3, intestinal
mm9_v1_chr2_+_110561733_110561771	0.220044	NKX3-1.p2	AY198336|Muc15|269328|mucin 15	AK052840|Muc15|269328|mucin 15	AK142590|Muc15|269328|mucin 15	NM_172979|Muc15|269328|mucin 15	BC094506|Muc15|269328|mucin 15	BC116796|Muc15|269328|mucin 15	BC119176|Muc15|269328|mucin 15
mm9_v1_chr13_+_76718869_76718988	0.219632	NKX3-1.p2	AK154322|Mctp1|78771|multiple C2 domains, transmembrane 1	AK144765|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr6_+_90424727_90424917	0.216955	NKX3-1.p2	AK185404|Klf15|66277|Kruppel-like factor 15	AK211444|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr4_+_154929136_154929270	0.216105	NKX3-1.p2	AK218112|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK190349|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK191980|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK199789|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK200062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr2_-_79969095_79969127	0.214704	NKX3-1.p2	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr14_-_111154292_111154370	0.213094	NKX3-1.p2	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr18_+_80315134_80315153	0.210474	NKX3-1.p2	AK010699|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm9_v1_chr16_-_17125198_17125232	0.209249	NKX3-1.p2	BC039993|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene	NM_183287|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene	AK012048|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene	AK146836|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene
mm9_v1_chr11_+_75578120_75578179	0.207401	NKX3-1.p2	AK218111|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK180909|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr2_-_163450863_163450871	0.205928	NKX3-1.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr5_+_34185760_34185844	0.205263	NKX3-1.p2	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr18_+_35776026_35776084	0.202546	NKX3-1.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr5_-_125866485_125866572	0.201649	NKX3-1.p2	S40697|Ubc|22190|ubiquitin C
mm9_v1_chr14_-_60845511_60845640	0.198435	NKX3-1.p2	AK145818|BC010981|407830|cDNA sequence BC010981
mm9_v1_chr7_+_107423813_107423829	0.195521	NKX3-1.p2	AK164085|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr7_+_114179649_114179650	0.195343	NKX3-1.p2	NM_147034|Olfr713|259036|olfactory receptor 713	BC100704|Olfr713|259036|olfactory receptor 713
mm9_v1_chr4_-_134409199_134409236	0.195066	NKX3-1.p2	BC042733|Tmem57|66146|transmembrane protein 57	BC044802|Tmem57|66146|transmembrane protein 57	BC037192|Tmem57|66146|transmembrane protein 57	BC019186|Tmem57|66146|transmembrane protein 57	AK020354|Tmem57|66146|transmembrane protein 57
mm9_v1_chr2_-_38080023_38080025	0.193455	NKX3-1.p2	AK033323|8030493G06Rik|320880|RIKEN cDNA 8030493G06 gene
mm9_v1_chr2_-_91516101_91516113	0.190839	NKX3-1.p2	BC024457|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr16_+_91465229_91465258	0.190109	NKX3-1.p2	AK020819|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr2_-_155984800_155984951	0.190099	NKX3-1.p2	AK134091|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr5_-_100392845_100392900	0.18976	NKX3-1.p2	AK053251|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr1_+_9591347_9591354	0.187873	NKX3-1.p2	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr10_-_4707228_4707322	0.187156	NKX3-1.p2	BC089511|Vip|22353|vasoactive intestinal polypeptide	AK018599|Vip|22353|vasoactive intestinal polypeptide	NM_011702|Vip|22353|vasoactive intestinal polypeptide
mm9_v1_chr10_+_4978808_4978917	0.182021	NKX3-1.p2	AK148504|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr4_-_43666412_43666469	0.181935	NKX3-1.p2	AK132968|Spag8|433700|sperm associated antigen 8	AY769082|Spag8|433700|sperm associated antigen 8	NM_001007463|Spag8|433700|sperm associated antigen 8	BC150868|Spag8|433700|sperm associated antigen 8
mm9_v1_chr3_-_83967952_83967954	0.180688	NKX3-1.p2	AK054540|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr5_+_88254710_88254721	0.179928	NKX3-1.p2	BC049645|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	BC103787|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	AK015291|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	NM_001163551|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	NM_028648|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene
mm9_v1_chr16_-_88708151_88708206	0.179832	NKX3-1.p2	BC133700|2310061N02Rik|69661|RIKEN cDNA 2310061N02 gene	AK010010|2310061N02Rik|69661|RIKEN cDNA 2310061N02 gene	NM_027155|2310061N02Rik|69661|RIKEN cDNA 2310061N02 gene
mm9_v1_chr2_+_152495196_152495240	0.178964	NKX3-1.p2	NM_001159551|H13|14950|histocompatibility 13	NM_001159552|H13|14950|histocompatibility 13	NM_001159553|H13|14950|histocompatibility 13	NM_010376|H13|14950|histocompatibility 13	AJ345032|H13|14950|histocompatibility 13	BC056977|H13|14950|histocompatibility 13	DQ168449|H13|14950|histocompatibility 13	AK012600|H13|14950|histocompatibility 13	AK007664|H13|14950|histocompatibility 13	AK004690|H13|14950|histocompatibility 13	AK019877|H13|14950|histocompatibility 13	AK039008|H13|14950|histocompatibility 13	AK049101|H13|14950|histocompatibility 13	AK159176|H13|14950|histocompatibility 13	AK028109|H13|14950|histocompatibility 13	AF483214|H13|14950|histocompatibility 13	AK080966|H13|14950|histocompatibility 13	AK169922|H13|14950|histocompatibility 13
mm9_v1_chr16_-_52268571_52268603	0.177348	NKX3-1.p2	AK161090|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr16_+_14705932_14706066	0.176774	NKX3-1.p2	AK133968|Snai2|20583|snail homolog 2 (Drosophila)	BC062164|Snai2|20583|snail homolog 2 (Drosophila)	NM_011415|Snai2|20583|snail homolog 2 (Drosophila)	U79550|Snai2|20583|snail homolog 2 (Drosophila)	U97059|Snai2|20583|snail homolog 2 (Drosophila)
mm9_v1_chr2_-_34610751_34610751	0.176528	NKX3-1.p2	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr14_+_73542347_73542351	0.175191	NKX3-1.p2	AK031242|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	AK031248|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr9_-_61761227_61761271	0.173843	NKX3-1.p2	AK203941|Rplp1|56040|ribosomal protein, large, P1
mm9_v1_chr14_-_14949338_14949426	0.173166	NKX3-1.p2	AK217031|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
mm9_v1_chr5_-_147396407_147396450	0.170024	NKX3-1.p2	D21061|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr2_+_162759398_162759483	0.169986	NKX3-1.p2	AK185344|Srsf6|67996|serine/arginine-rich splicing factor 6	AK208133|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr17_-_23908488_23908570	0.169417	NKX3-1.p2	AK168389|Flywch1|224613|FLYWCH-type zinc finger 1	NM_153791|Flywch1|224613|FLYWCH-type zinc finger 1
mm9_v1_chr12_-_113205152_113205166	0.169279	NKX3-1.p2	BC055712|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr9_+_110255447_110255486	0.168634	NKX3-1.p2	
mm9_v1_chr8_+_74120004_74120094	0.16791	NKX3-1.p2	
mm9_v1_chr11_+_58660666_58660700	0.167047	NKX3-1.p2	
mm9_v1_chr5_+_117825813_117825951	0.166767	NKX3-1.p2	
mm9_v1_chr14_+_14286471_14286627	0.166292	NKX3-1.p2	NM_001163032|Synpr|72003|synaptoporin	AK033999|Synpr|72003|synaptoporin	AK032442|Synpr|72003|synaptoporin	AK045705|Synpr|72003|synaptoporin	AK049661|Synpr|72003|synaptoporin
mm9_v1_chr4_+_6312276_6312305	0.16458	NKX3-1.p2	AK178827|Sdcbp|53378|syndecan binding protein	AK213782|Sdcbp|53378|syndecan binding protein
mm9_v1_chr7_+_50927384_50927400	0.16295	NKX3-1.p2	AK155284|Ctu1|233189|cytosolic thiouridylase subunit 1 homolog (S. pombe)	AK160967|Ctu1|233189|cytosolic thiouridylase subunit 1 homolog (S. pombe)	BC005752|Ctu1|233189|cytosolic thiouridylase subunit 1 homolog (S. pombe)	NM_145582|Ctu1|233189|cytosolic thiouridylase subunit 1 homolog (S. pombe)
mm9_v1_chr6_-_83456775_83456962	0.161788	NKX3-1.p2	AK167071|Dguok|27369|deoxyguanosine kinase	U90524|Dguok|27369|deoxyguanosine kinase	AJ133749|Dguok|27369|deoxyguanosine kinase	AY037862|Dguok|27369|deoxyguanosine kinase	BC012647|Dguok|27369|deoxyguanosine kinase	AK035281|Dguok|27369|deoxyguanosine kinase	BC094920|Dguok|27369|deoxyguanosine kinase	NM_001162521|Dguok|27369|deoxyguanosine kinase	NM_013764|Dguok|27369|deoxyguanosine kinase
mm9_v1_chr3_-_51129908_51129958	0.1613	NKX3-1.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr9_+_114624257_114624316	0.158993	NKX3-1.p2	AK205150|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK217382|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chrX_-_34650263_34650340	0.158686	NKX3-1.p2	AK019989|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC058761|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK162222|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK011606|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK145431|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	NM_026573|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117769|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117770|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm9_v1_chr6_-_145167481_145167570	0.154862	NKX3-1.p2	BC014700|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC031623|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr11_-_106642357_106642481	0.154724	NKX3-1.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr11_-_102546084_102546176	0.154044	NKX3-1.p2	
mm9_v1_chr4_-_109959366_109959438	0.149515	NKX3-1.p2	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr13_+_113590999_113591130	0.147793	NKX3-1.p2	BC061161|Ppap2a|19012|phosphatidic acid phosphatase type 2A	NM_008247|Ppap2a|19012|phosphatidic acid phosphatase type 2A	L43371|Ppap2a|19012|phosphatidic acid phosphatase type 2A	AK077275|Ppap2a|19012|phosphatidic acid phosphatase type 2A	D84376|Ppap2a|19012|phosphatidic acid phosphatase type 2A	NM_008903|Ppap2a|19012|phosphatidic acid phosphatase type 2A
mm9_v1_chr10_+_127795461_127795537	0.147164	NKX3-1.p2	DQ403125|Cs|12974|citrate synthase	AK012104|Cs|12974|citrate synthase
mm9_v1_chr6_+_71323420_71323597	0.145585	NKX3-1.p2	M12052|Cd8a|12525|CD8 antigen, alpha chain	NM_001081110|Cd8a|12525|CD8 antigen, alpha chain	NM_009857|Cd8a|12525|CD8 antigen, alpha chain	M12825|Cd8a|12525|CD8 antigen, alpha chain	M16981|Cd8a|12525|CD8 antigen, alpha chain	AK088128|Cd8a|12525|CD8 antigen, alpha chain	AK088214|Cd8a|12525|CD8 antigen, alpha chain	AK088447|Cd8a|12525|CD8 antigen, alpha chain	AK037467|Cd8a|12525|CD8 antigen, alpha chain	AK088414|Cd8a|12525|CD8 antigen, alpha chain	U34881|Cd8a|12525|CD8 antigen, alpha chain	BC030679|Cd8a|12525|CD8 antigen, alpha chain	AK137937|Cd8a|12525|CD8 antigen, alpha chain	AK017889|Cd8a|12525|CD8 antigen, alpha chain
mm9_v1_chr8_+_56040211_56040342	0.144501	NKX3-1.p2	BC043130|Gpm6a|234267|glycoprotein m6a	AK147245|Gpm6a|234267|glycoprotein m6a	AK147280|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr10_+_19890580_19890589	0.144064	NKX3-1.p2	AK138516|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene	AK138667|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene
mm9_v1_chr12_+_53800369_53800393	0.143262	NKX3-1.p2	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr11_-_120422109_120422348	0.142518	NKX3-1.p2	AK199305|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK207358|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK215989|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK192153|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK198572|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK194021|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK197388|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK198858|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK199711|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK200927|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide
mm9_v1_chr4_+_140528820_140528899	0.14199	NKX3-1.p2	AF095936|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	AK190493|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
mm9_v1_chr4_-_117567163_117567203	0.14165	NKX3-1.p2	
mm9_v1_chr8_+_42416046_42416071	0.140717	NKX3-1.p2	AK040482|Pcm1|18536|pericentriolar material 1
mm9_v1_chr2_+_127429570_127429640	0.139583	NKX3-1.p2	AK047438|Mrps5|77721|mitochondrial ribosomal protein S5
mm9_v1_chrX_-_71618617_71618655	0.138794	NKX3-1.p2	BC023050|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	AK041958|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr3_+_159502646_159502709	0.136012	NKX3-1.p2	BC075615|Wls|68151|wntless homolog (Drosophila)	NM_026582|Wls|68151|wntless homolog (Drosophila)	AK029053|Wls|68151|wntless homolog (Drosophila)	AK044810|Wls|68151|wntless homolog (Drosophila)	AK019886|Wls|68151|wntless homolog (Drosophila)	AK029104|Wls|68151|wntless homolog (Drosophila)	AK029315|Wls|68151|wntless homolog (Drosophila)	AK031444|Wls|68151|wntless homolog (Drosophila)	AK049842|Wls|68151|wntless homolog (Drosophila)	AK128912|Wls|68151|wntless homolog (Drosophila)	AK159207|Wls|68151|wntless homolog (Drosophila)	AK159977|Wls|68151|wntless homolog (Drosophila)	AK077407|Wls|68151|wntless homolog (Drosophila)
mm9_v1_chr5_+_118426774_118426787	0.135586	NKX3-1.p2	AK049723|Fbxo21|231670|F-box protein 21	NM_145564|Fbxo21|231670|F-box protein 21	AK076521|Fbxo21|231670|F-box protein 21
mm9_v1_chrX_-_54579777_54579845	0.134652	NKX3-1.p2	AK028642|Arhgef6|73341|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm9_v1_chr11_-_51799215_51799347	0.133503	NKX3-1.p2	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr10_+_59465552_59465606	0.132789	NKX3-1.p2	AK053811|Ascc1|69090|activating signal cointegrator 1 complex subunit 1	BC030905|Ascc1|69090|activating signal cointegrator 1 complex subunit 1	NM_026937|Ascc1|69090|activating signal cointegrator 1 complex subunit 1	AK144614|Ascc1|69090|activating signal cointegrator 1 complex subunit 1	AK171958|Ascc1|69090|activating signal cointegrator 1 complex subunit 1
mm9_v1_chr4_-_115742546_115742551	0.13274	NKX3-1.p2	AK028137|Uqcrh|66576|ubiquinol-cytochrome c reductase hinge protein
mm9_v1_chr5_+_116096907_116097001	0.13216	NKX3-1.p2	
mm9_v1_chr2_+_35154311_35154429	0.131935	NKX3-1.p2	AK188287|Gsn|227753|gelsolin	AK188608|Gsn|227753|gelsolin
mm9_v1_chr9_-_67407509_67407509	0.130686	NKX3-1.p2	NM_001081242|Tln2|70549|talin 2
mm9_v1_chr1_+_5073161_5073324	0.130558	NKX3-1.p2	AK151659|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK034165|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK135137|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK152147|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK081492|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	BC009154|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK078767|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	NM_133826|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H
mm9_v1_chr13_-_74460431_74460546	0.13055	NKX3-1.p2	
mm9_v1_chr7_-_149762919_149762977	0.129773	NKX3-1.p2	BC025150|H19|14955|H19 fetal liver mRNA
mm9_v1_chr15_+_81725666_81725708	0.129683	NKX3-1.p2	AK188036|Aco2|11429|aconitase 2, mitochondrial	AK213382|Aco2|11429|aconitase 2, mitochondrial
mm9_v1_chr5_+_134659874_134659999	0.129656	NKX3-1.p2	AK082488|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY116023|Gtf2ird2|114674|GTF2I repeat domain containing 2	AK081801|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC057179|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY014963|Gtf2ird2|114674|GTF2I repeat domain containing 2	NM_053266|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132157|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132159|Gtf2ird2|114674|GTF2I repeat domain containing 2
mm9_v1_chr17_+_37006518_37006546	0.128989	NKX3-1.p2	NM_011280|Trim10|19824|tripartite motif-containing 10	AK011082|Trim10|19824|tripartite motif-containing 10	AF134811|Trim10|19824|tripartite motif-containing 10	BC051632|Trim10|19824|tripartite motif-containing 10	AF220121|Trim10|19824|tripartite motif-containing 10
mm9_v1_chr6_-_148937854_148937926	0.126987	NKX3-1.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr17_+_24546733_24546845	0.125239	NKX3-1.p2	BC038271|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chr6_-_128493413_128493444	0.125169	NKX3-1.p2	BC048546|BC048546|232400|cDNA sequence BC048546
mm9_v1_chr1_-_39608846_39608882	0.12381	NKX3-1.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr8_-_61179517_61179592	0.123478	NKX3-1.p2	EU477373|LOC100271928|100271928|testis specific expressed protein 6	NM_001177534|LOC100271928|100271928|testis specific expressed protein 6
mm9_v1_chr15_+_84022647_84022764	0.120424	NKX3-1.p2	AK159740|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK039949|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	NM_178614|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK144975|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK041783|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK084395|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119178|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119180|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK086633|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK167806|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK161378|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169066|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169351|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK003990|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK168510|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)
mm9_v1_chr11_-_116711807_116712035	0.119713	NKX3-1.p2	AK211203|Srsf2|20382|serine/arginine-rich splicing factor 2	AK207032|Srsf2|20382|serine/arginine-rich splicing factor 2	AK212169|Srsf2|20382|serine/arginine-rich splicing factor 2	AK220014|Srsf2|20382|serine/arginine-rich splicing factor 2	AF250134|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr5_-_139606339_139606437	0.117964	NKX3-1.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr3_-_63733328_63733393	0.117791	NKX3-1.p2	BC125500|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene	BC132160|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene
mm9_v1_chr10_+_27794625_27794662	0.116603	NKX3-1.p2	NM_008983|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK078614|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC138376|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC145261|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK083006|Ptprk|19272|protein tyrosine phosphatase, receptor type, K
mm9_v1_chr8_+_109867910_109868036	0.11627	NKX3-1.p2	
mm9_v1_chr11_+_73416083_73416083	0.116052	NKX3-1.p2	NM_207224|Olfr384|193053|olfactory receptor 384
mm9_v1_chr2_+_97306600_97306623	0.116004	NKX3-1.p2	
mm9_v1_chr9_-_65402264_65402343	0.115321	NKX3-1.p2	
mm9_v1_chr15_+_78860623_78860757	0.114809	NKX3-1.p2	
mm9_v1_chr17_-_38557129_38557129	0.114665	NKX3-1.p2	AB307016|Esp36|100126765|exocrine gland-secreting peptide 36	NM_001177587|Esp36|100126765|exocrine gland-secreting peptide 36
mm9_v1_chr16_+_17331507_17331521	0.112679	NKX3-1.p2	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr10_+_53057491_53057558	0.1125	NKX3-1.p2	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr5_+_90919758_90919765	0.110727	NKX3-1.p2	AK075972|Afp|11576|alpha fetoprotein	AK076197|Afp|11576|alpha fetoprotein	AK146513|Afp|11576|alpha fetoprotein	AK146524|Afp|11576|alpha fetoprotein	AK168426|Afp|11576|alpha fetoprotein	AK168574|Afp|11576|alpha fetoprotein	AK168751|Afp|11576|alpha fetoprotein	AK169046|Afp|11576|alpha fetoprotein	AK169054|Afp|11576|alpha fetoprotein	AK010934|Afp|11576|alpha fetoprotein	AK076053|Afp|11576|alpha fetoprotein	AK145975|Afp|11576|alpha fetoprotein	AK168576|Afp|11576|alpha fetoprotein	AK168883|Afp|11576|alpha fetoprotein	AK169147|Afp|11576|alpha fetoprotein	AK167549|Afp|11576|alpha fetoprotein	V00743|Afp|11576|alpha fetoprotein
mm9_v1_chr6_-_24465033_24465068	0.110338	NKX3-1.p2	BC137937|Iqub|214704|IQ motif and ubiquitin domain containing	BC137957|Iqub|214704|IQ motif and ubiquitin domain containing	AK133019|Iqub|214704|IQ motif and ubiquitin domain containing	AK029931|Iqub|214704|IQ motif and ubiquitin domain containing	NM_172535|Iqub|214704|IQ motif and ubiquitin domain containing
mm9_v1_chr2_-_89247233_89247234	0.108873	NKX3-1.p2	NM_146790|Olfr1238|258786|olfactory receptor 1238	BC128571|Olfr1238|258786|olfactory receptor 1238
mm9_v1_chr7_-_34926107_34926132	0.108807	NKX3-1.p2	AK218279|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK208593|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr6_+_17586971_17587041	0.108153	NKX3-1.p2	U16741|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK150751|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK031551|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr9_+_38185467_38185476	0.107382	NKX3-1.p2	BC106986|Olfr900|258874|olfactory receptor 900	NM_146874|Olfr900|258874|olfactory receptor 900	NM_207553|Olfr251|404313|olfactory receptor 251
mm9_v1_chrX_-_71618556_71618610	0.106969	NKX3-1.p2	EU599043|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599044|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599045|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	BC027440|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	NM_145406|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr10_+_127261285_127261339	0.106786	NKX3-1.p2	AY053573|Rdh18-ps|380674|retinol dehydrogenase 18, pseudogene
mm9_v1_chr12_+_101447480_101447584	0.105328	NKX3-1.p2	BC021618|Calm1|12313|calmodulin 1
mm9_v1_chr7_+_4874178_4874216	0.104509	NKX3-1.p2	AK078272|Nat14|269854|N-acetyltransferase 14	BC047219|Nat14|269854|N-acetyltransferase 14
mm9_v1_chr16_+_49906392_49906404	0.104385	NKX3-1.p2	
mm9_v1_chr5_-_108026906_108026906	0.103532	NKX3-1.p2	AK034160|Glmn|170823|glomulin, FKBP associated protein	NM_001161738|Glmn|170823|glomulin, FKBP associated protein
mm9_v1_chr15_+_98538624_98538661	0.102814	NKX3-1.p2	AK077174|Ccdc65|105833|coiled-coil domain containing 65	BC048073|Ccdc65|105833|coiled-coil domain containing 65	AF454432|Ccdc65|105833|coiled-coil domain containing 65	NM_153518|Ccdc65|105833|coiled-coil domain containing 65	BC056947|Ccdc65|105833|coiled-coil domain containing 65	BC060155|Ccdc65|105833|coiled-coil domain containing 65
mm9_v1_chr6_+_65729006_65729018	0.102508	NKX3-1.p2	AK021384|Prdm5|70779|PR domain containing 5	BC089598|Prdm5|70779|PR domain containing 5	AK018310|Prdm5|70779|PR domain containing 5
mm9_v1_chr2_+_78710638_78710757	0.10237	NKX3-1.p2	AF003346|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr6_+_73221007_73221091	0.10175	NKX3-1.p2	AK204482|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr5_+_119214935_119215085	0.100608	NKX3-1.p2	AK083611|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr1_+_136327630_136327750	0.10052	NKX3-1.p2	
mm9_v1_chr7_+_63185457_63185630	0.0998178	NKX3-1.p2	AK195390|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK052509|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr19_+_13439119_13439119	0.0996357	NKX3-1.p2	NM_146691|Olfr1467|258686|olfactory receptor 1467
mm9_v1_chr18_+_37839910_37840111	0.0982092	NKX3-1.p2	BC054741|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	BC098367|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	AY013804|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	NM_033574|Pcdhgb1|93699|protocadherin gamma subfamily B, 1
mm9_v1_chr18_+_37828606_37828758	0.0981538	NKX3-1.p2	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr2_+_13500063_13500099	0.0979827	NKX3-1.p2	AK198215|Vim|22352|vimentin	AK208074|Vim|22352|vimentin	AK209588|Vim|22352|vimentin	AK209779|Vim|22352|vimentin	AK210390|Vim|22352|vimentin	AK210884|Vim|22352|vimentin	AK212337|Vim|22352|vimentin	AK212338|Vim|22352|vimentin	AK212907|Vim|22352|vimentin	AK213561|Vim|22352|vimentin	AK216501|Vim|22352|vimentin	AK217097|Vim|22352|vimentin	AK218080|Vim|22352|vimentin	AK218318|Vim|22352|vimentin	AK205873|Vim|22352|vimentin
mm9_v1_chr1_-_37592976_37593103	0.0975383	NKX3-1.p2	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr2_+_26203297_26203537	0.0964807	NKX3-1.p2	AK007593|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)	AK211070|Gpsm1|67839|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm9_v1_chr4_+_57907032_57907040	0.0959187	NKX3-1.p2	AK086796|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr12_-_73509668_73509745	0.0958693	NKX3-1.p2	BC053926|Rtn1|104001|reticulon 1	BC058579|Rtn1|104001|reticulon 1
mm9_v1_chr2_+_44966657_44966746	0.0958303	NKX3-1.p2	BC031611|Gm13476|433424|predicted gene 13476	NM_001177394|Gm13476|433424|predicted gene 13476
mm9_v1_chr16_-_36046531_36046538	0.095581	NKX3-1.p2	AK182371|Fam162a|70186|family with sequence similarity 162, member A	AK212003|Fam162a|70186|family with sequence similarity 162, member A
mm9_v1_chr16_+_4937622_4937664	0.0955705	NKX3-1.p2	AK189949|Mgrn1|17237|mahogunin, ring finger 1	AK194956|Mgrn1|17237|mahogunin, ring finger 1	AK218167|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr3_-_153574996_153575274	0.0948297	NKX3-1.p2	AK160162|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC003948|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC021335|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	AF231926|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	U12922|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC132473|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC138547|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145323|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145324|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145325|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145326|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	NM_011231|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC057661|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit
mm9_v1_chr9_-_42776275_42776291	0.0946057	NKX3-1.p2	AK162687|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr1_-_179178874_179178897	0.0943042	NKX3-1.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr7_-_129245303_129245368	0.093573	NKX3-1.p2	AK167447|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK089103|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC092379|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC060951|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018717|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK008788|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK009698|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK010307|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK011302|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018688|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK151719|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK152995|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	NM_028177|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr6_-_3349470_3349570	0.093552	NKX3-1.p2	BC079894|Samd9l|209086|sterile alpha motif domain containing 9-like	AK052535|Samd9l|209086|sterile alpha motif domain containing 9-like	NM_010156|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr14_+_78304045_78304240	0.0935094	NKX3-1.p2	AK136055|Epsti1|108670|epithelial stromal interaction 1 (breast)	NM_029495|Epsti1|108670|epithelial stromal interaction 1 (breast)	NM_178825|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK135710|Epsti1|108670|epithelial stromal interaction 1 (breast)	AY239224|Epsti1|108670|epithelial stromal interaction 1 (breast)	BC021821|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK077376|Epsti1|108670|epithelial stromal interaction 1 (breast)	BC020120|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK017174|Epsti1|108670|epithelial stromal interaction 1 (breast)	AY239223|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK030289|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK077223|Epsti1|108670|epithelial stromal interaction 1 (breast)
mm9_v1_chr3_+_94641626_94641643	0.093037	NKX3-1.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr2_+_13504271_13504305	0.0920055	NKX3-1.p2	
mm9_v1_chr2_+_80184132_80184149	0.0910905	NKX3-1.p2	
mm9_v1_chr9_-_55983967_55984081	0.0906874	NKX3-1.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr10_+_60552061_60552145	0.0906118	NKX3-1.p2	NM_025273|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	AK007401|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	BC024354|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
mm9_v1_chr1_-_55044032_55044295	0.0904447	NKX3-1.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr2_+_14978339_14978456	0.0894999	NKX3-1.p2	
mm9_v1_chr9_-_119835967_119836242	0.088361	NKX3-1.p2	AK198424|Gorasp1|74498|golgi reassembly stacking protein 1	AK209806|Gorasp1|74498|golgi reassembly stacking protein 1	AK213744|Gorasp1|74498|golgi reassembly stacking protein 1	AK204247|Gorasp1|74498|golgi reassembly stacking protein 1
mm9_v1_chr19_+_56948738_56948999	0.0876806	NKX3-1.p2	AK145058|Vwa2|240675|von Willebrand factor A domain containing 2	AK166339|Vwa2|240675|von Willebrand factor A domain containing 2	AK160971|Vwa2|240675|von Willebrand factor A domain containing 2	AJ536329|Vwa2|240675|von Willebrand factor A domain containing 2	NM_172840|Vwa2|240675|von Willebrand factor A domain containing 2	BC116636|Vwa2|240675|von Willebrand factor A domain containing 2	BC115868|Vwa2|240675|von Willebrand factor A domain containing 2	AK029297|Vwa2|240675|von Willebrand factor A domain containing 2	AK133486|Vwa2|240675|von Willebrand factor A domain containing 2
mm9_v1_chr1_-_184397778_184397904	0.0873681	NKX3-1.p2	AK192389|Capn2|12334|calpain 2	AK203804|Capn2|12334|calpain 2	AK198770|Capn2|12334|calpain 2	AK203361|Capn2|12334|calpain 2
mm9_v1_chr6_-_97155541_97155640	0.0871016	NKX3-1.p2	BC002002|Uba3|22200|ubiquitin-like modifier activating enzyme 3	BC080776|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK048148|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK032514|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK166655|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK168859|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK043801|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK014433|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_001111106|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_011666|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK159381|Uba3|22200|ubiquitin-like modifier activating enzyme 3
mm9_v1_chr6_-_41264706_41264793	0.0869839	NKX3-1.p2	AK007843|Try5|103964|trypsin 5	AK131898|Try5|103964|trypsin 5	AK160484|Try5|103964|trypsin 5	AB009661|Try5|103964|trypsin 5	NM_001003405|Try5|103964|trypsin 5	BC139220|Try5|103964|trypsin 5	BC139223|Try5|103964|trypsin 5
mm9_v1_chr17_-_36157472_36157645	0.0868875	NKX3-1.p2	NM_008207|H2-T24|15042|histocompatibility 2, T region locus 24
mm9_v1_chrX_-_45944937_45944938	0.0868082	NKX3-1.p2	BC051397|Zfp280c|208968|zinc finger protein 280C	NM_001166650|Zfp280c|208968|zinc finger protein 280C	BC028839|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr15_+_41662472_41662583	0.08673	NKX3-1.p2	NM_001130164|Oxr1|170719|oxidation resistance 1	AK014186|3110047M12Rik|73184|RIKEN cDNA 3110047M12 gene
mm9_v1_chr8_-_37633134_37633136	0.0865151	NKX3-1.p2	AK086364|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr9_+_106091656_106091698	0.0860955	NKX3-1.p2	BC054453|Wdr82|77305|WD repeat domain containing 82	BC112907|Wdr82|77305|WD repeat domain containing 82	BC044669|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr2_-_87552060_87552060	0.0859646	NKX3-1.p2	NM_001011833|Olfr1137|258101|olfactory receptor 1137
mm9_v1_chr1_-_183111470_183111575	0.0857907	NKX3-1.p2	AK211036|Wdr26|226757|WD repeat domain 26
mm9_v1_chr2_+_122463622_122463653	0.0841206	NKX3-1.p2	BC049633|AA467197|433470|expressed sequence AA467197	NM_001004174|AA467197|433470|expressed sequence AA467197	AK150561|AA467197|433470|expressed sequence AA467197	AK141297|AA467197|433470|expressed sequence AA467197
mm9_v1_chr10_-_117261663_117261731	0.083804	NKX3-1.p2	M79314|Rap1b|215449|RAS related protein 1b	BC147700|Rap1b|215449|RAS related protein 1b	BC147713|Rap1b|215449|RAS related protein 1b
mm9_v1_chr4_-_116314542_116314556	0.0836919	NKX3-1.p2	AK178751|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK203039|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr8_-_11199802_11199859	0.0821221	NKX3-1.p2	X92439|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr16_+_17045284_17045304	0.0815406	NKX3-1.p2	AK018549|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr16_+_91465283_91465348	0.0815112	NKX3-1.p2	AK162627|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene	AK038602|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr16_-_85901306_85901312	0.0811537	NKX3-1.p2	AK020662|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr1_-_16647097_16647129	0.0801981	NKX3-1.p2	BC028545|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK011757|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1
mm9_v1_chr15_-_90764873_90764944	0.0800869	NKX3-1.p2	AK052821|Kif21a|16564|kinesin family member 21A	AK047208|Kif21a|16564|kinesin family member 21A
mm9_v1_chr2_+_113839219_113839495	0.0793904	NKX3-1.p2	AK082668|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK045761|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK043120|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK044743|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK046235|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK045885|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene
mm9_v1_chrX_+_35954355_35954475	0.0777596	NKX3-1.p2	AK138385|Mcts1|68995|malignant T cell amplified sequence 1	BC037103|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chr6_+_113097451_113097475	0.0776527	NKX3-1.p2	
mm9_v1_chr10_+_127527153_127527192	0.0774064	NKX3-1.p2	
mm9_v1_chr7_+_116081258_116081309	0.0757562	NKX3-1.p2	AK217928|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK192917|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr6_+_65728933_65728994	0.0755481	NKX3-1.p2	NM_027547|Prdm5|70779|PR domain containing 5	BC138901|Prdm5|70779|PR domain containing 5	BC138902|Prdm5|70779|PR domain containing 5
mm9_v1_chr17_+_47506145_47506145	0.0755312	NKX3-1.p2	BC048912|Mrps10|64657|mitochondrial ribosomal protein S10	NM_183086|Mrps10|64657|mitochondrial ribosomal protein S10
mm9_v1_chr2_+_154262114_154262265	0.0754463	NKX3-1.p2	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr10_+_110929965_110929972	0.0753337	NKX3-1.p2	AK216281|Nap1l1|53605|nucleosome assembly protein 1-like 1
mm9_v1_chr9_+_85739048_85739158	0.0750696	NKX3-1.p2	AK050794|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr2_-_44965866_44965983	0.0750092	NKX3-1.p2	AK122312|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535781|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535783|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr11_-_40562329_40562432	0.0742674	NKX3-1.p2	
mm9_v1_chr10_-_80962400_80962451	0.0739428	NKX3-1.p2	AK075854|S1pr4|13611|sphingosine-1-phosphate receptor 4	AK154242|S1pr4|13611|sphingosine-1-phosphate receptor 4	BC107000|S1pr4|13611|sphingosine-1-phosphate receptor 4
mm9_v1_chr6_+_55018048_55018055	0.0736574	NKX3-1.p2	
mm9_v1_chr2_-_32630929_32631152	0.0735262	NKX3-1.p2	AK133273|Ttc16|338348|tetratricopeptide repeat domain 16	AK164721|Ttc16|338348|tetratricopeptide repeat domain 16	AK089384|Ttc16|338348|tetratricopeptide repeat domain 16
mm9_v1_chr15_+_59162396_59162483	0.0730018	NKX3-1.p2	AK190780|Sqle|20775|squalene epoxidase	AK217980|Sqle|20775|squalene epoxidase
mm9_v1_chr5_-_87997908_87998005	0.0722749	NKX3-1.p2	AF026073|Sult1d1|53315|sulfotransferase family 1D, member 1	AK133530|Sult1d1|53315|sulfotransferase family 1D, member 1	U32371|Sult1d1|53315|sulfotransferase family 1D, member 1	BC066190|Sult1d1|53315|sulfotransferase family 1D, member 1	BC010752|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr3_+_95465860_95465866	0.0720006	NKX3-1.p2	AK160634|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr3_+_123058707_123058740	0.0719717	NKX3-1.p2	AK009425|Sec24d|69608|Sec24 related gene family, member D (S. cerevisiae)
mm9_v1_chrX_-_35793335_35793510	0.071626	NKX3-1.p2	AK184164|Lamp2|16784|lysosomal-associated membrane protein 2	AK217258|Lamp2|16784|lysosomal-associated membrane protein 2	AK128946|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr9_+_96159666_96159703	0.0715727	NKX3-1.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr5_-_44485951_44486006	0.0715198	NKX3-1.p2	AF305215|Prom1|19126|prominin 1	AY099088|Prom1|19126|prominin 1	AY223521|Prom1|19126|prominin 1	AY223522|Prom1|19126|prominin 1	NM_001163578|Prom1|19126|prominin 1	NM_001163581|Prom1|19126|prominin 1	NM_001163582|Prom1|19126|prominin 1	NM_001163583|Prom1|19126|prominin 1	NM_001163584|Prom1|19126|prominin 1	NM_001163585|Prom1|19126|prominin 1
mm9_v1_chr16_-_96343290_96343364	0.0714202	NKX3-1.p2	
mm9_v1_chr2_+_162762650_162762674	0.0713698	NKX3-1.p2	
mm9_v1_chr5_+_34974750_34974884	0.0712801	NKX3-1.p2	
mm9_v1_chr7_-_110655456_110655457	0.0712509	NKX3-1.p2	BC113199|Olfr610|259085|olfactory receptor 610	NM_147081|Olfr610|259085|olfactory receptor 610
mm9_v1_chr5_+_90893032_90893045	0.070757	NKX3-1.p2	M16111|Alb|11657|albumin
mm9_v1_chr17_+_87362450_87362450	0.0707541	NKX3-1.p2	BC056363|Rhoq|104215|ras homolog gene family, member Q	NM_145491|Rhoq|104215|ras homolog gene family, member Q
mm9_v1_chr1_+_136321327_136321456	0.070708	NKX3-1.p2	AK214372|Adipor1|72674|adiponectin receptor 1	AK180261|Adipor1|72674|adiponectin receptor 1
mm9_v1_chr7_-_133643662_133643692	0.070672	NKX3-1.p2	BC043451|Atxn2l|233871|ataxin 2-like
mm9_v1_chr9_+_113721698_113721717	0.0706503	NKX3-1.p2	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chrX_-_156560678_156560850	0.0704688	NKX3-1.p2	AL355693|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr3_-_144372258_144372323	0.0701478	NKX3-1.p2	AK178501|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr9_-_50910070_50910182	0.0697098	NKX3-1.p2	AK014780|4833427G06Rik|235345|RIKEN cDNA 4833427G06 gene	AK132837|4833427G06Rik|235345|RIKEN cDNA 4833427G06 gene	BC048587|4833427G06Rik|235345|RIKEN cDNA 4833427G06 gene	NM_177702|4833427G06Rik|235345|RIKEN cDNA 4833427G06 gene
mm9_v1_chr7_+_59134514_59134648	0.069697	NKX3-1.p2	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr1_+_176102903_176103041	0.0696817	NKX3-1.p2	NM_011465|Spna1|20739|spectrin alpha 1	AK142860|Spna1|20739|spectrin alpha 1	U87455|Spna1|20739|spectrin alpha 1	AF093576|Spna1|20739|spectrin alpha 1	BC150747|Spna1|20739|spectrin alpha 1
mm9_v1_chr11_-_98862163_98862321	0.0696435	NKX3-1.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr10_+_40657980_40658124	0.0695499	NKX3-1.p2	AK080786|Wasf1|83767|WASP family 1
mm9_v1_chr16_+_17331463_17331501	0.0693516	NKX3-1.p2	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr9_+_14305110_14305173	0.0692629	NKX3-1.p2	AK003834|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK002864|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK145249|Cwc15|66070|CWC15 homolog (S. cerevisiae)	BC004726|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK013670|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK167776|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK168365|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK003202|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AJ250394|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr6_-_85894613_85894649	0.0687653	NKX3-1.p2	AK089506|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
mm9_v1_chr13_-_101386865_101386925	0.0687533	NKX3-1.p2	DQ143929|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	DQ682659|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	DQ682661|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	AK156238|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	NM_178410|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	AK133741|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	NM_001038602|Marveld2|218518|MARVEL (membrane-associating) domain containing 2
mm9_v1_chr15_-_83207509_83207618	0.0687488	NKX3-1.p2	
mm9_v1_chr3_-_115832278_115832299	0.0685924	NKX3-1.p2	CT010373|Vcam1|22329|vascular cell adhesion molecule 1	X67783|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr4_+_15211137_15211173	0.0672786	NKX3-1.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr1_-_84741605_84741713	0.067058	NKX3-1.p2	BC004085|Trip12|14897|thyroid hormone receptor interactor 12
mm9_v1_chr19_-_12841737_12842025	0.0665425	NKX3-1.p2	AK018620|Zfp91|109910|zinc finger protein 91	AK012081|Zfp91|109910|zinc finger protein 91
mm9_v1_chr9_-_73781373_73781373	0.0656254	NKX3-1.p2	NM_001081153|Unc13c|208898|unc-13 homolog C (C. elegans)
mm9_v1_chr5_-_111239017_111239099	0.0654497	NKX3-1.p2	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr15_+_57972893_57972996	0.0649176	NKX3-1.p2	AK150578|Wdyhv1|76773|WDYHV motif containing 1	AK010831|Wdyhv1|76773|WDYHV motif containing 1	AK167510|Wdyhv1|76773|WDYHV motif containing 1	BC051524|Wdyhv1|76773|WDYHV motif containing 1	NM_029734|Wdyhv1|76773|WDYHV motif containing 1
mm9_v1_chr7_-_52317021_52317119	0.0647115	NKX3-1.p2	BC025098|Prrg2|65116|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	NM_022999|Prrg2|65116|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm9_v1_chr6_-_148893155_148893361	0.0646672	NKX3-1.p2	AK046519|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr2_-_60591836_60591898	0.0645104	NKX3-1.p2	AK159851|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr15_+_6395353_6395370	0.0641721	NKX3-1.p2	X05475|C9|12279|complement component 9
mm9_v1_chr7_+_74792295_74792398	0.0639622	NKX3-1.p2	AK086049|Ttc23|67009|tetratricopeptide repeat domain 23	AK165626|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168475|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168476|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168477|Ttc23|67009|tetratricopeptide repeat domain 23	NM_025905|Ttc23|67009|tetratricopeptide repeat domain 23	AK141754|Ttc23|67009|tetratricopeptide repeat domain 23	BC038179|Ttc23|67009|tetratricopeptide repeat domain 23	AK005431|Ttc23|67009|tetratricopeptide repeat domain 23	AK084269|Ttc23|67009|tetratricopeptide repeat domain 23	AK166555|Ttc23|67009|tetratricopeptide repeat domain 23	AK166613|Ttc23|67009|tetratricopeptide repeat domain 23
mm9_v1_chr4_+_140522412_140522429	0.0636955	NKX3-1.p2	DQ403000|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
mm9_v1_chr7_-_53285651_53285671	0.063123	NKX3-1.p2	AB028737|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	BC040400|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	EF109740|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	EF109741|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	NM_018795|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6
mm9_v1_chr11_+_42234760_42234851	0.0628253	NKX3-1.p2	U14419|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	AK034069|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	GU086167|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr18_+_37656644_37656807	0.062083	NKX3-1.p2	AK029163|Pcdhb19|93890|protocadherin beta 19	AK147520|Pcdhb19|93890|protocadherin beta 19	AK160654|Pcdhb19|93890|protocadherin beta 19	NM_053144|Pcdhb19|93890|protocadherin beta 19	AK046363|Pcdhb19|93890|protocadherin beta 19	BC141290|Pcdhb19|93890|protocadherin beta 19	BC141291|Pcdhb19|93890|protocadherin beta 19	AF326312|Pcdhb19|93890|protocadherin beta 19	AY013780|Pcdhb19|93890|protocadherin beta 19
mm9_v1_chr12_+_86474651_86474814	0.0617167	NKX3-1.p2	AK218097|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK201762|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK202210|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK205589|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK206354|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK207941|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK209363|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK210896|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK219425|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK186759|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr3_+_59835700_59835727	0.0613959	NKX3-1.p2	NM_023383|Aadac|67758|arylacetamide deacetylase (esterase)	AK008244|Aadac|67758|arylacetamide deacetylase (esterase)	BC054823|Aadac|67758|arylacetamide deacetylase (esterase)	BC019999|Aadac|67758|arylacetamide deacetylase (esterase)
mm9_v1_chr10_+_77512586_77512759	0.0611989	NKX3-1.p2	AK010434|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	NM_019448|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	BC083147|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	AJ404467|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	AF220524|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like
mm9_v1_chr6_+_82984190_82984300	0.0606109	NKX3-1.p2	AF053368|Loxl3|16950|lysyl oxidase-like 3	AK145189|Loxl3|16950|lysyl oxidase-like 3	AK030548|Loxl3|16950|lysyl oxidase-like 3	NM_013586|Loxl3|16950|lysyl oxidase-like 3	BC011298|Loxl3|16950|lysyl oxidase-like 3
mm9_v1_chr18_+_34480612_34480673	0.0601763	NKX3-1.p2	AK137301|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr5_-_114292548_114292630	0.060026	NKX3-1.p2	
mm9_v1_chr5_+_117827904_117828056	0.0588938	NKX3-1.p2	AK195234|Wsb2|59043|WD repeat and SOCS box-containing 2	AK198504|Wsb2|59043|WD repeat and SOCS box-containing 2	AK206996|Wsb2|59043|WD repeat and SOCS box-containing 2	AK210681|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr7_+_25039812_25039838	0.0588702	NKX3-1.p2	AK032355|Zfp108|54678|zinc finger protein 108	NM_018791|Zfp108|54678|zinc finger protein 108	AF167315|Zfp108|54678|zinc finger protein 108
mm9_v1_chr10_+_34018323_34018472	0.0587802	NKX3-1.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chr14_+_46703700_46703706	0.0582157	NKX3-1.p2	AK088453|Gm1821|218963|ubiquitin pseudogene
mm9_v1_chr3_+_108374611_108374644	0.0581072	NKX3-1.p2	AK007227|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK007339|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_025444|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK076595|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK160171|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC021447|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr8_+_28153059_28153137	0.0578041	NKX3-1.p2	AK049905|Prosc|114863|proline synthetase co-transcribed	BC047992|Prosc|114863|proline synthetase co-transcribed	AK160172|Prosc|114863|proline synthetase co-transcribed	AK032308|Prosc|114863|proline synthetase co-transcribed	AK134549|Prosc|114863|proline synthetase co-transcribed	AK191605|Prosc|114863|proline synthetase co-transcribed	AK203439|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr7_-_151622848_151622956	0.0576182	NKX3-1.p2	AK184845|Cttn|13043|cortactin
mm9_v1_chr2_-_4544898_4544915	0.0574587	NKX3-1.p2	BC019370|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr5_-_87335956_87335985	0.0567997	NKX3-1.p2	BC028826|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	NM_153598|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	AK145951|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34
mm9_v1_chr6_+_56952293_56952348	0.056784	NKX3-1.p2	BC125532|Vmn1r6|171193|vomeronasal 1 receptor 6	BC125534|Vmn1r6|171193|vomeronasal 1 receptor 6	NM_134175|Vmn1r6|171193|vomeronasal 1 receptor 6
mm9_v1_chr6_+_86028044_86028077	0.0567671	NKX3-1.p2	AK156954|Add2|11519|adducin 2 (beta)	AK028425|Add2|11519|adducin 2 (beta)	AK014496|Add2|11519|adducin 2 (beta)	NM_013458|Add2|11519|adducin 2 (beta)
mm9_v1_chr9_+_111277323_111277357	0.0558632	NKX3-1.p2	BC086653|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr4_+_102432773_102432784	0.0558105	NKX3-1.p2	AK147926|Sgip1|73094|SH3-domain GRB2-like (endophilin) interacting protein 1
mm9_v1_chr17_-_57163687_57163784	0.0556986	NKX3-1.p2	BC064454|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr14_-_96918064_96918252	0.0556694	NKX3-1.p2	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr7_+_19791687_19791691	0.0549877	NKX3-1.p2	AK215580|Eml2|72205|echinoderm microtubule associated protein like 2
mm9_v1_chr2_+_80159376_80159440	0.0546711	NKX3-1.p2	AK179556|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10
mm9_v1_chr5_+_108329554_108329638	0.0542372	NKX3-1.p2	AK013107|Rpl5|100503670|ribosomal protein L5	AK032778|Rpl5|100503670|ribosomal protein L5	AK152381|Rpl5|100503670|ribosomal protein L5	AK008489|Rpl5|100503670|ribosomal protein L5	AK169313|Rpl5|100503670|ribosomal protein L5	AK088036|Rpl5|100503670|ribosomal protein L5	BC005790|Rpl5|100503670|ribosomal protein L5	BC083318|Rpl5|100503670|ribosomal protein L5	BC026934|Rpl5|100503670|ribosomal protein L5	BC091752|Rpl5|100503670|ribosomal protein L5	NM_016980|Rpl5|100503670|ribosomal protein L5	AK166865|Rpl5|100503670|ribosomal protein L5	BC106128|Rpl5|100503670|ribosomal protein L5
mm9_v1_chr2_-_30823346_30823454	0.0542132	NKX3-1.p2	AK082936|Tor1a|30931|torsin family 1, member A (torsin A)	AK079728|Tor1a|30931|torsin family 1, member A (torsin A)	AJ298841|Tor1a|30931|torsin family 1, member A (torsin A)	AK038891|Tor1a|30931|torsin family 1, member A (torsin A)	AK160361|Tor1a|30931|torsin family 1, member A (torsin A)	BC017683|Tor1a|30931|torsin family 1, member A (torsin A)	NM_144884|Tor1a|30931|torsin family 1, member A (torsin A)
mm9_v1_chr2_+_153571990_153572007	0.0537226	NKX3-1.p2	BC052405|Mapre1|13589|microtubule-associated protein, RP/EB family, member 1
mm9_v1_chr16_-_84831712_84831743	0.0534185	NKX3-1.p2	U77128|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr10_+_127691166_127691233	0.0526296	NKX3-1.p2	NM_133996|Apon|28194|apolipoprotein N	AK083289|Apon|28194|apolipoprotein N
mm9_v1_chr10_-_127617294_127617366	0.0518521	NKX3-1.p2	AK147838|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	NM_001039080|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr5_+_118426792_118426794	0.0512823	NKX3-1.p2	AB093270|Fbxo21|231670|F-box protein 21
mm9_v1_chr1_+_189039382_189039433	0.051256	NKX3-1.p2	AK167826|Gpatch2|67769|G patch domain containing 2	AK169660|Gpatch2|67769|G patch domain containing 2	NM_026367|Gpatch2|67769|G patch domain containing 2	AK053781|Gpatch2|67769|G patch domain containing 2	AK011727|Gpatch2|67769|G patch domain containing 2	AK029990|Gpatch2|67769|G patch domain containing 2	AK032734|Gpatch2|67769|G patch domain containing 2	BC054810|Gpatch2|67769|G patch domain containing 2	AK017975|Gpatch2|67769|G patch domain containing 2
mm9_v1_chr11_-_69182814_69182823	0.0503796	NKX3-1.p2	AF020311|Chd3|216848|chromodomain helicase DNA binding protein 3
mm9_v1_chr7_-_139749889_139749896	0.0502977	NKX3-1.p2	
mm9_v1_chr1_+_175980505_175980507	0.0502345	NKX3-1.p2	BC106793|Olfr432|258711|olfactory receptor 432	NM_146716|Olfr432|258711|olfactory receptor 432	BC106792|Olfr432|258711|olfactory receptor 432
mm9_v1_chr11_+_73600441_73600441	0.0501135	NKX3-1.p2	NM_146347|Olfr390|258344|olfactory receptor 390
mm9_v1_chr1_-_80272987_80273120	0.0498379	NKX3-1.p2	
mm9_v1_chr16_+_13265171_13265171	0.0497503	NKX3-1.p2	BC028459|Mkl2|239719|MKL/myocardin-like 2	NM_181860|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr14_+_51715674_51715674	0.0495336	NKX3-1.p2	AK159966|Ang|11727|angiogenin, ribonuclease, RNase A family, 5	NM_007447|Ang|11727|angiogenin, ribonuclease, RNase A family, 5	NM_201239|Rnase4|58809|ribonuclease, RNase A family 4
mm9_v1_chr10_+_128143313_128143342	0.0495166	NKX3-1.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chr3_+_101266000_101266048	0.0494926	NKX3-1.p2	AK012857|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr13_+_43497279_43497424	0.0494712	NKX3-1.p2	AK140839|Nol7|70078|nucleolar protein 7
mm9_v1_chr13_-_67433435_67433495	0.0493303	NKX3-1.p2	BC141018|Zfp595|218314|zinc finger protein 595	AK134150|Zfp595|218314|zinc finger protein 595	AK154058|Zfp595|218314|zinc finger protein 595	AK136304|Zfp595|218314|zinc finger protein 595	AK038563|Zfp595|218314|zinc finger protein 595	NM_177622|Zfp595|218314|zinc finger protein 595
mm9_v1_chr18_-_35064624_35064726	0.049009	NKX3-1.p2	AK195141|Etf1|225363|eukaryotic translation termination factor 1	AK218551|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr9_-_100386803_100386891	0.0485402	NKX3-1.p2	BC107263|Il20rb|213208|interleukin 20 receptor beta	BC107264|Il20rb|213208|interleukin 20 receptor beta	BC148190|Il20rb|213208|interleukin 20 receptor beta	NM_001033543|Il20rb|213208|interleukin 20 receptor beta
mm9_v1_chr12_-_85741801_85741813	0.0483495	NKX3-1.p2	AK079267|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK002618|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr2_+_88798624_88798624	0.0477044	NKX3-1.p2	NM_207140|Olfr1212|258241|olfactory receptor 1212
mm9_v1_chr12_-_42212337_42212337	0.0476509	NKX3-1.p2	BC069041|Lrrn3|16981|leucine rich repeat protein 3, neuronal	NM_010733|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr10_+_67498616_67498743	0.0475633	NKX3-1.p2	AK087079|Rtkn2|170799|rhotekin 2
mm9_v1_chr7_-_110976499_110976501	0.047422	NKX3-1.p2	S71555|Hbb-b1|15129|hemoglobin, beta adult major chain	S71558|Hbb-b1|15129|hemoglobin, beta adult major chain	S71559|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr1_+_137029275_137029304	0.0471886	NKX3-1.p2	AK083305|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7	NM_177081|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7
mm9_v1_chr6_+_55018084_55018092	0.0469067	NKX3-1.p2	AK215449|Gars|353172|glycyl-tRNA synthetase
mm9_v1_chr15_+_4003731_4003740	0.0466369	NKX3-1.p2	AK181182|Oxct1|67041|3-oxoacid CoA transferase 1	AK181314|Oxct1|67041|3-oxoacid CoA transferase 1	AK184597|Oxct1|67041|3-oxoacid CoA transferase 1	AK185295|Oxct1|67041|3-oxoacid CoA transferase 1
mm9_v1_chrX_+_39855629_39855874	0.0463706	NKX3-1.p2	AK042476|Sh2d1a|20400|SH2 domain protein 1A	AF072903|Sh2d1a|20400|SH2 domain protein 1A	AK040076|Sh2d1a|20400|SH2 domain protein 1A	NM_011364|Sh2d1a|20400|SH2 domain protein 1A	BC065390|Sh2d1a|20400|SH2 domain protein 1A	AF097632|Sh2d1a|20400|SH2 domain protein 1A	AF097633|Sh2d1a|20400|SH2 domain protein 1A	BC147367|Sh2d1a|20400|SH2 domain protein 1A	BC147368|Sh2d1a|20400|SH2 domain protein 1A
mm9_v1_chr11_-_101278690_101278747	0.0462594	NKX3-1.p2	AK168281|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	AK136332|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	AK078016|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	BC005711|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1	NM_144829|Aarsd1|69684|alanyl-tRNA synthetase domain containing 1
mm9_v1_chr1_-_72905107_72905143	0.0449515	NKX3-1.p2	AK011683|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr2_-_129135707_129135713	0.0446753	NKX3-1.p2	AK156449|Il1a|16175|interleukin 1 alpha	NM_010554|Il1a|16175|interleukin 1 alpha	X01450|Il1a|16175|interleukin 1 alpha
mm9_v1_chr9_+_117161650_117161701	0.0444405	NKX3-1.p2	
mm9_v1_chr2_+_24132788_24133018	0.0443917	NKX3-1.p2	AK008977|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK009741|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK076547|Il1f5|54450|interleukin 1 family, member 5 (delta)	NM_019451|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK010020|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF200495|Il1f5|54450|interleukin 1 family, member 5 (delta)	AJ250429|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132600|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132602|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF230378|Il1f5|54450|interleukin 1 family, member 5 (delta)
mm9_v1_chr14_+_48283430_48283453	0.0436809	NKX3-1.p2	NM_008477|Ktn1|16709|kinectin 1	L43326|Ktn1|16709|kinectin 1
mm9_v1_chr18_+_50115628_50115725	0.0436608	NKX3-1.p2	AK046910|Dmxl1|240283|Dmx-like 1
mm9_v1_chr14_+_61928589_61928687	0.043584	NKX3-1.p2	BC064093|Arl11|219144|ADP-ribosylation factor-like 11	NM_177337|Arl11|219144|ADP-ribosylation factor-like 11	AK155765|Arl11|219144|ADP-ribosylation factor-like 11	AK050053|Arl11|219144|ADP-ribosylation factor-like 11	AK008804|Arl11|219144|ADP-ribosylation factor-like 11
mm9_v1_chr11_-_61058671_61058791	0.0434637	NKX3-1.p2	
mm9_v1_chr7_-_30945790_30945794	0.0428304	NKX3-1.p2	AK033366|8430406M14Rik|399592|RIKEN cDNA 8430406M14 gene
mm9_v1_chr17_+_70774131_70774133	0.042713	NKX3-1.p2	NM_027712|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	NM_177639|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	BC062120|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr14_+_79915429_79915530	0.0421847	NKX3-1.p2	AK132456|Elf1|13709|E74-like factor 1	U19617|Elf1|13709|E74-like factor 1	AK156098|Elf1|13709|E74-like factor 1	BC037743|Elf1|13709|E74-like factor 1	BC027532|Elf1|13709|E74-like factor 1	BC053914|Elf1|13709|E74-like factor 1
mm9_v1_chr13_-_38694739_38694840	0.0418748	NKX3-1.p2	
mm9_v1_chr3_+_67406958_67407063	0.0416508	NKX3-1.p2	AK171855|Mfsd1|66868|major facilitator superfamily domain containing 1
mm9_v1_chr1_+_45401303_45401332	0.0416232	NKX3-1.p2	AK159868|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr13_-_67407347_67407402	0.0409972	NKX3-1.p2	NM_001003666|Zfp457|431706|zinc finger protein 457
mm9_v1_chr17_-_45724536_45724608	0.0408062	NKX3-1.p2	AK198320|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK212529|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr6_+_88053362_88053458	0.0405298	NKX3-1.p2	AK213986|Rpn1|103963|ribophorin I
mm9_v1_chr14_-_31756446_31756482	0.0399895	NKX3-1.p2	BC013465|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	X70391|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	BC028814|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	AK149500|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	NM_008406|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1
mm9_v1_chr5_-_17355533_17355611	0.0391809	NKX3-1.p2	AK172162|Cd36|12491|CD36 antigen	BC010262|Cd36|12491|CD36 antigen	AK150648|Cd36|12491|CD36 antigen	NM_001159556|Cd36|12491|CD36 antigen	NM_001159557|Cd36|12491|CD36 antigen
mm9_v1_chr18_-_62915799_62916000	0.0391409	NKX3-1.p2	BC072581|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK012381|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK020725|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene
mm9_v1_chr16_+_57152994_57153228	0.0377316	NKX3-1.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr1_+_75435521_75435559	0.0372238	NKX3-1.p2	AK189243|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr11_-_5662259_5662400	0.0371295	NKX3-1.p2	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr4_-_106979732_106979773	0.0368415	NKX3-1.p2	AK002549|Dio1|13370|deiodinase, iodothyronine, type I	BC089608|Dio1|13370|deiodinase, iodothyronine, type I	NM_007860|Dio1|13370|deiodinase, iodothyronine, type I	U49861|Dio1|13370|deiodinase, iodothyronine, type I	BC019786|Dio1|13370|deiodinase, iodothyronine, type I	BC037080|Dio1|13370|deiodinase, iodothyronine, type I
mm9_v1_chr4_-_135609279_135609318	0.0362632	NKX3-1.p2	AK011211|Rpl11|67025|ribosomal protein L11	AK011800|Rpl11|67025|ribosomal protein L11	AK169053|Rpl11|67025|ribosomal protein L11	AK002998|Rpl11|67025|ribosomal protein L11	AK008422|Rpl11|67025|ribosomal protein L11	AK013923|Rpl11|67025|ribosomal protein L11	AK014593|Rpl11|67025|ribosomal protein L11	AK153486|Rpl11|67025|ribosomal protein L11	AK164445|Rpl11|67025|ribosomal protein L11	NM_025919|Rpl11|67025|ribosomal protein L11	AK088967|Rpl11|67025|ribosomal protein L11
mm9_v1_chr9_+_69855789_69855998	0.0359542	NKX3-1.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr12_+_30512469_30512567	0.0358316	NKX3-1.p2	AK049967|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr5_+_122821868_122821884	0.0357962	NKX3-1.p2	AK042405|Gpn3|68080|GPN-loop GTPase 3
mm9_v1_chr9_+_32180002_32180181	0.0348949	NKX3-1.p2	NM_019659|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	AK085262|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1	AF012834|Kcnj1|56379|potassium inwardly-rectifying channel, subfamily J, member 1
mm9_v1_chr10_+_107769093_107769244	0.0348384	NKX3-1.p2	BC050234|Pawr|114774|PRKC, apoptosis, WT1, regulator	BC027693|Pawr|114774|PRKC, apoptosis, WT1, regulator	DQ363525|Pawr|114774|PRKC, apoptosis, WT1, regulator	NM_054056|Pawr|114774|PRKC, apoptosis, WT1, regulator
mm9_v1_chr14_+_102239673_102239864	0.0348374	NKX3-1.p2	AK053129|Lmo7|380928|LIM domain only 7	AK143133|Lmo7|380928|LIM domain only 7	AK129231|Lmo7|380928|LIM domain only 7
mm9_v1_chr10_-_95010006_95010009	0.0348373	NKX3-1.p2	AK190818|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK196789|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK201590|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK202794|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr13_+_42961598_42961632	0.0346081	NKX3-1.p2	AK139452|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr5_+_48763568_48763674	0.0339735	NKX3-1.p2	AK032498|Pacrgl|66768|PARK2 co-regulated-like	AK016966|Pacrgl|66768|PARK2 co-regulated-like	AK018101|Pacrgl|66768|PARK2 co-regulated-like	AK014276|Pacrgl|66768|PARK2 co-regulated-like	BC018481|Pacrgl|66768|PARK2 co-regulated-like	NM_025755|Pacrgl|66768|PARK2 co-regulated-like
mm9_v1_chr2_-_120346171_120346284	0.033178	NKX3-1.p2	AF060245|Zfp106|20402|zinc finger protein 106	AK029313|Zfp106|20402|zinc finger protein 106
mm9_v1_chr5_+_143996849_143996932	0.0331604	NKX3-1.p2	AK049650|Zfp12|231866|zinc finger protein 12	NM_177681|Zfp12|231866|zinc finger protein 12	BC059836|Zfp12|231866|zinc finger protein 12	BC053080|Zfp12|231866|zinc finger protein 12
mm9_v1_chr3_-_107474108_107474148	0.0331075	NKX3-1.p2	AK207163|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr8_+_74676812_74676920	0.033082	NKX3-1.p2	
mm9_v1_chrX_+_132758579_132758588	0.0330224	NKX3-1.p2	NM_001127169|Tceal7|100040972|transcription elongation factor A (SII)-like 7	AK003800|Tceal7|100040972|transcription elongation factor A (SII)-like 7
mm9_v1_chr3_+_94926272_94926508	0.03296	NKX3-1.p2	
mm9_v1_chr17_-_14831058_14831092	0.0328764	NKX3-1.p2	BC053702|Thbs2|21826|thrombospondin 2
mm9_v1_chr14_-_65716932_65716942	0.0315202	NKX3-1.p2	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr9_+_35367050_35367089	0.0315041	NKX3-1.p2	AK019213|Pus3|67049|pseudouridine synthase 3	AK079095|Pus3|67049|pseudouridine synthase 3	NM_023292|Pus3|67049|pseudouridine synthase 3	AK017552|Pus3|67049|pseudouridine synthase 3	BC029253|Pus3|67049|pseudouridine synthase 3
mm9_v1_chr8_+_126547293_126547372	0.0314522	NKX3-1.p2	BC151125|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	NM_001029876|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm9_v1_chr17_-_24210437_24210453	0.0313993	NKX3-1.p2	AK052960|Kctd5|69259|potassium channel tetramerisation domain containing 5	NM_027008|Kctd5|69259|potassium channel tetramerisation domain containing 5
mm9_v1_chr10_+_80614066_80614217	0.0309279	NKX3-1.p2	AK018596|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr6_-_5143755_5143945	0.0307672	NKX3-1.p2	BC012706|Pon1|18979|paraoxonase 1	U72636|Pon1|18979|paraoxonase 1	U32684|Pon1|18979|paraoxonase 1	NM_011134|Pon1|18979|paraoxonase 1
mm9_v1_chr15_-_77591830_77592015	0.0305336	NKX3-1.p2	M88754|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK087164|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC026521|Myh9|17886|myosin, heavy polypeptide 9, non-muscle
mm9_v1_chr13_+_67880629_67880739	0.0302706	NKX3-1.p2	NM_028402|Zfp493|72958|zinc finger protein 493	AK013687|Zfp493|72958|zinc finger protein 493	AK140336|Zfp493|72958|zinc finger protein 493
mm9_v1_chr5_-_87569342_87569376	0.0302262	NKX3-1.p2	X06358|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	BC028262|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	AK136480|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	NM_009467|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5
mm9_v1_chr9_-_96978102_96978110	0.0296644	NKX3-1.p2	AK087750|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr14_-_65515555_65515693	0.029589	NKX3-1.p2	BC002212|Hmbox1|219150|homeobox containing 1
mm9_v1_chrX_-_22797942_22797952	0.029243	NKX3-1.p2	AK013399|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr5_-_108998727_108998913	0.0291441	NKX3-1.p2	AK204470|Gak|231580|cyclin G associated kinase	AK205859|Gak|231580|cyclin G associated kinase
mm9_v1_chr10_-_61441817_61441832	0.0291223	NKX3-1.p2	BC034164|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chrX_+_95345000_95345120	0.0289763	NKX3-1.p2	X59592|Ar|11835|androgen receptor	S56585|Ar|11835|androgen receptor	AK133647|Ar|11835|androgen receptor	NM_013476|Ar|11835|androgen receptor	X53779|Ar|11835|androgen receptor	X59411|Ar|11835|androgen receptor	M37890|Ar|11835|androgen receptor
mm9_v1_chr6_+_122871804_122871930	0.0289228	NKX3-1.p2	BC049354|Clec4a1|269799|C-type lectin domain family 4, member a1	NM_199311|Clec4a1|269799|C-type lectin domain family 4, member a1	AY397675|Clec4a1|269799|C-type lectin domain family 4, member a1
mm9_v1_chr2_-_35972131_35972337	0.0284849	NKX3-1.p2	AK220096|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr16_-_59027730_59027752	0.028302	NKX3-1.p2	NM_146321|Olfr186|258318|olfactory receptor 186	BC150713|Olfr186|258318|olfactory receptor 186
mm9_v1_chr5_+_17468366_17468438	0.0282011	NKX3-1.p2	BC147449|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	BC147466|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	AK040065|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	NM_001081143|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	BC147839|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	BC147841|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3
mm9_v1_chr5_+_91456489_91456542	0.0280652	NKX3-1.p2	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chrX_+_159207693_159207814	0.0278973	NKX3-1.p2	AK206156|Rbbp7|245688|retinoblastoma binding protein 7
mm9_v1_chr11_+_43534658_43534687	0.027813	NKX3-1.p2	AK086604|Pwwp2a|70802|PWWP domain containing 2A	AK039984|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr7_+_110048855_110048882	0.0273179	NKX3-1.p2	BC116966|Olfr570|259114|olfactory receptor 570	NM_147110|Olfr570|259114|olfactory receptor 570
mm9_v1_chr6_-_56312803_56312803	0.027141	NKX3-1.p2	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr3_-_37024751_37024880	0.0259916	NKX3-1.p2	U41504|Il2|16183|interleukin 2	DQ836354|Il2|16183|interleukin 2	U41494|Il2|16183|interleukin 2	U41505|Il2|16183|interleukin 2	U41506|Il2|16183|interleukin 2	AY147902|Il2|16183|interleukin 2	X66058|Il2|16183|interleukin 2	AF065914|Il2|16183|interleukin 2	AF065915|Il2|16183|interleukin 2	AF065916|Il2|16183|interleukin 2	BC116845|Il2|16183|interleukin 2	BC116873|Il2|16183|interleukin 2	X01772|Il2|16183|interleukin 2	X73040|Il2|16183|interleukin 2	K02292|Il2|16183|interleukin 2	NM_008366|Il2|16183|interleukin 2	AF538059|Il2|16183|interleukin 2	AF542383|Il2|16183|interleukin 2	AF542384|Il2|16183|interleukin 2	AF542385|Il2|16183|interleukin 2
mm9_v1_chr6_+_65729025_65729108	0.0256369	NKX3-1.p2	AK014501|Prdm5|70779|PR domain containing 5	AK200908|Prdm5|70779|PR domain containing 5
mm9_v1_chr10_-_127444563_127444662	0.0255707	NKX3-1.p2	BC021836|Hsd17b6|27400|hydroxysteroid (17-beta) dehydrogenase 6	NM_013786|Hsd17b6|27400|hydroxysteroid (17-beta) dehydrogenase 6	AK008212|Hsd17b6|27400|hydroxysteroid (17-beta) dehydrogenase 6
mm9_v1_chr3_+_144260300_144260351	0.0253156	NKX3-1.p2	AK205282|Sep15|93684|selenoprotein	AK213933|Sep15|93684|selenoprotein	AK218207|Sep15|93684|selenoprotein
mm9_v1_chr17_+_29227908_29227961	0.0251535	NKX3-1.p2	NM_001111099|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr5_-_124028994_124029065	0.0247814	NKX3-1.p2	AK003546|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr7_+_110368156_110368233	0.0247003	NKX3-1.p2	BC141016|Olfr594|258246|olfactory receptor 594	NM_207143|Olfr594|258246|olfactory receptor 594
mm9_v1_chr16_-_84955086_84955166	0.0245758	NKX3-1.p2	AK190928|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr10_+_41250456_41250646	0.0236459	NKX3-1.p2	AK217133|Cd164|53599|CD164 antigen	AK135616|Cd164|53599|CD164 antigen
mm9_v1_chr2_+_87366184_87366358	0.02337	NKX3-1.p2	BC090254|Srp9|27058|signal recognition particle 9
mm9_v1_chr9_+_51894884_51895031	0.0231888	NKX3-1.p2	AK216134|Rdx|19684|radixin
mm9_v1_chr6_+_29803751_29803890	0.0218548	NKX3-1.p2	AK172595|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr3_-_101640128_101640145	0.0218492	NKX3-1.p2	NM_172295|Mab21l3|242125|mab-21-like 3 (C. elegans)
mm9_v1_chr4_-_46417054_46417104	0.0218404	NKX3-1.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr16_-_16504310_16504310	0.0217261	NKX3-1.p2	AF402612|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139233|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr15_+_10106992_10106998	0.0215483	NKX3-1.p2	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr16_-_98169926_98169967	0.0214558	NKX3-1.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr17_+_38040466_38040492	0.0208395	NKX3-1.p2	BC132433|Olfr127|258374|olfactory receptor 127	BC145997|Olfr127|258374|olfactory receptor 127	NM_146377|Olfr127|258374|olfactory receptor 127
mm9_v1_chr6_-_136765642_136765708	0.0208278	NKX3-1.p2	BC104145|Wbp11|60321|WW domain binding protein 11
mm9_v1_chr4_-_46416895_46416973	0.020645	NKX3-1.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr8_+_3567980_3567997	0.020503	NKX3-1.p2	AK168456|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	AK011562|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	AK049309|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	NM_001024728|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene
mm9_v1_chr4_-_116312481_116312553	0.0204634	NKX3-1.p2	AK181349|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr18_-_61874531_61874583	0.0204624	NKX3-1.p2	BC024866|Grpel2|17714|GrpE-like 2, mitochondrial
mm9_v1_chr17_+_26852581_26852657	0.0202683	NKX3-1.p2	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr14_-_47398619_47398682	0.020097	NKX3-1.p2	
mm9_v1_chr7_-_52965801_52965838	0.02009	NKX3-1.p2	AK198375|Sphk2|56632|sphingosine kinase 2	AK202851|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr5_+_90890764_90890776	0.0200415	NKX3-1.p2	AK050644|Alb|11657|albumin
mm9_v1_chr17_+_21587315_21587362	0.0198063	NKX3-1.p2	NM_009558|Zfp51|22709|zinc finger protein 51	X74855|Zfp51|22709|zinc finger protein 51	AK154157|Zfp51|22709|zinc finger protein 51	AK133677|Zfp51|22709|zinc finger protein 51	BC011183|Zfp51|22709|zinc finger protein 51
mm9_v1_chr11_-_106642684_106642809	0.0197955	NKX3-1.p2	AK149022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr8_+_70018744_70018846	0.0191732	NKX3-1.p2	AK007583|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	BC012972|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_001168577|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	AJ251710|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_010874|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)
mm9_v1_chr18_+_37911236_37911432	0.0190652	NKX3-1.p2	BC066823|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	AY013809|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	NM_033579|Pcdhgb7|93704|protocadherin gamma subfamily B, 7
mm9_v1_chr6_+_38542722_38542769	0.0185887	NKX3-1.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr8_+_108703203_108703313	0.0180796	NKX3-1.p2	
mm9_v1_chr9_+_32031833_32031859	0.0174869	NKX3-1.p2	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr9_-_15105965_15105999	0.0171269	NKX3-1.p2	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chrX_-_71526939_71526996	0.0169773	NKX3-1.p2	DQ116784|Dnase1l1|69537|deoxyribonuclease 1-like 1	AK150242|Dnase1l1|69537|deoxyribonuclease 1-like 1
mm9_v1_chr10_-_126719287_126719357	0.0168621	NKX3-1.p2	AK034474|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr5_+_32794685_32794762	0.0164763	NKX3-1.p2	AK017392|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr10_+_72117619_72117694	0.0162688	NKX3-1.p2	BC027100|Zwint|52696|ZW10 interactor	AK004305|Zwint|52696|ZW10 interactor	AK134380|Zwint|52696|ZW10 interactor	NM_025635|Zwint|52696|ZW10 interactor	AK008144|Zwint|52696|ZW10 interactor	AK082215|Zwint|52696|ZW10 interactor	AK075977|Zwint|52696|ZW10 interactor	AK013556|Zwint|52696|ZW10 interactor	BC034870|Zwint|52696|ZW10 interactor	BC013559|Zwint|52696|ZW10 interactor	AK184469|Zwint|52696|ZW10 interactor
mm9_v1_chr16_-_44016471_44016548	0.0154032	NKX3-1.p2	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr1_+_45390415_45390462	0.0153376	NKX3-1.p2	BC039923|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chrX_-_147531030_147531085	0.0142215	NKX3-1.p2	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr19_-_44471675_44471892	0.0140149	NKX3-1.p2	AK012370|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr7_-_109713935_109713982	0.013737	NKX3-1.p2	BC010580|Trim21|20821|tripartite motif-containing 21	L27990|Trim21|20821|tripartite motif-containing 21	AK150484|Trim21|20821|tripartite motif-containing 21	AK171489|Trim21|20821|tripartite motif-containing 21	AK152619|Trim21|20821|tripartite motif-containing 21	AK141294|Trim21|20821|tripartite motif-containing 21	NM_001082552|Trim21|20821|tripartite motif-containing 21	NM_009277|Trim21|20821|tripartite motif-containing 21
mm9_v1_chr2_-_35316760_35317051	0.0123346	NKX3-1.p2	BC006810|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK088605|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M26925|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M85153|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AF297615|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_001145821|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_010283|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK004753|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK159087|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3
mm9_v1_chr16_+_22009607_22009725	0.0122936	NKX3-1.p2	AY188288|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr11_-_95137035_95137140	0.0117455	NKX3-1.p2	AK179739|Myst2|217127|MYST histone acetyltransferase 2	AK178421|Myst2|217127|MYST histone acetyltransferase 2	AK179227|Myst2|217127|MYST histone acetyltransferase 2	AK186092|Myst2|217127|MYST histone acetyltransferase 2	AK203203|Myst2|217127|MYST histone acetyltransferase 2	AK204177|Myst2|217127|MYST histone acetyltransferase 2	AK212451|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr7_-_106976715_106976926	0.0105982	NKX3-1.p2	BC116892|Neu3|50877|neuraminidase 3	BC116924|Neu3|50877|neuraminidase 3	AK050428|Neu3|50877|neuraminidase 3	AK134405|Neu3|50877|neuraminidase 3	AB026842|Neu3|50877|neuraminidase 3	NM_016720|Neu3|50877|neuraminidase 3
mm9_v1_chr7_-_15023845_15023901	0.0103515	NKX3-1.p2	BC031851|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK050422|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr5_+_33715497_33715611	0.00998413	NKX3-1.p2	
mm9_v1_chr9_-_42062436_42062522	0.00945851	NKX3-1.p2	AK050439|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK165139|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr7_+_52965052_52965376	0.00932808	NKX3-1.p2	AK192990|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr2_-_121890678_121890752	0.00882238	NKX3-1.p2	BC019404|Spg11|214585|spastic paraplegia 11
mm9_v1_chr10_-_90579986_90580013	0.00858953	NKX3-1.p2	AK198800|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK190863|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK184040|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191542|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191799|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194450|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194768|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200191|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200546|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200877|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK202780|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203930|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK213202|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK215444|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK193469|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK196032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr16_-_85030543_85030555	0.00846718	NKX3-1.p2	AK076506|App|11820|amyloid beta (A4) precursor protein	AK200287|App|11820|amyloid beta (A4) precursor protein	AK203089|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr15_-_95358989_95359075	0.00795671	NKX3-1.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr11_-_116712559_116712636	0.00741886	NKX3-1.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr11_-_3831515_3831585	0.00701146	NKX3-1.p2	AK197212|Tcn2|21452|transcobalamin 2	AF090686|Tcn2|21452|transcobalamin 2
mm9_v1_chr3_+_123045975_123046085	0.00688518	NKX3-1.p2	BC038038|Sec24d|69608|Sec24 related gene family, member D (S. cerevisiae)	BC049257|Sec24d|69608|Sec24 related gene family, member D (S. cerevisiae)
mm9_v1_chr2_-_77357674_77357722	0.00678006	NKX3-1.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr18_-_36926866_36926900	0.00611575	NKX3-1.p2	
mm9_v1_chr9_+_35024031_35024058	0.00610284	NKX3-1.p2	AK219602|Srpr|67398|signal recognition particle receptor ('docking protein')
mm9_v1_chr6_-_142271469_142271500	0.00594512	NKX3-1.p2	AF240694|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	NM_130861|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	AK029706|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5
mm9_v1_chr7_-_39056336_39056416	0.00590109	NKX3-1.p2	AK002855|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	AK003293|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	NM_025390|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	AK152948|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	AK150459|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	AK003908|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	BC011465|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	AK054466|Pop4|66161|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
mm9_v1_chr7_+_128061257_128061281	0.00467239	NKX3-1.p2	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr5_-_92776160_92776261	0.00401603	NKX3-1.p2	AK152838|Cxcl10|15945|chemokine (C-X-C motif) ligand 10
mm9_v1_chrX_-_103415034_103415180	0.00391208	NKX3-1.p2	AK135097|Taf9b|407786|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001001176|Taf9b|407786|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr8_-_74150754_74150876	0.00350421	NKX3-1.p2	AK141620|Unc13a|382018|unc-13 homolog A (C. elegans)	AK048697|Unc13a|382018|unc-13 homolog A (C. elegans)	AK039579|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr11_-_50108981_50109027	0.00295994	NKX3-1.p2	AK004422|Canx|12330|calnexin
mm9_v1_chr19_+_32694494_32694583	0.00286671	NKX3-1.p2	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr10_+_89280918_89280988	0.00267211	NKX3-1.p2	AK079985|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK046432|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK008586|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr6_+_57530968_57531087	0.00195055	NKX3-1.p2	NM_025992|Herc6|67138|hect domain and RLD 6	AK149648|Herc6|67138|hect domain and RLD 6	AK147960|Herc6|67138|hect domain and RLD 6	AK011047|Herc6|67138|hect domain and RLD 6
mm9_v1_chr7_+_111054855_111054855	0.00175614	NKX3-1.p2	BC137766|Olfr65|18365|olfactory receptor 65	NM_013616|Olfr65|18365|olfactory receptor 65
mm9_v1_chr10_+_92951804_92951841	0.00167215	NKX3-1.p2	AK028963|Hal|15109|histidine ammonia lyase	AK081409|Hal|15109|histidine ammonia lyase	BC057637|Hal|15109|histidine ammonia lyase	L07645|Hal|15109|histidine ammonia lyase
mm9_v1_chr6_-_87338847_87338928	0.000293018	NKX3-1.p2	AK004474|Gkn3|68888|gastrokine 3	FN600638|Gkn3|68888|gastrokine 3	GU220566|Gkn3|68888|gastrokine 3	BC116955|Gkn3|68888|gastrokine 3	NM_026860|Gkn3|68888|gastrokine 3
