mm9_v1_chrM_+_13320_13486	8.90427	PAX4.p2	
mm9_v1_chr19_+_53214934_53215104	8.88578	PAX4.p2	NM_001164099|Add3|27360|adducin 3 (gamma)	NM_001164101|Add3|27360|adducin 3 (gamma)	AK019491|Add3|27360|adducin 3 (gamma)	AK028481|Add3|27360|adducin 3 (gamma)	AK083939|Add3|27360|adducin 3 (gamma)	BC029196|Add3|27360|adducin 3 (gamma)	AK035151|Add3|27360|adducin 3 (gamma)
mm9_v1_chr8_-_87297283_87297318	6.34164	PAX4.p2	BC090626|Nfix|18032|nuclear factor I/X
mm9_v1_chr9_-_58006851_58007027	5.83856	PAX4.p2	BC006602|Islr|26968|immunoglobulin superfamily containing leucine-rich repeat	NM_012043|Islr|26968|immunoglobulin superfamily containing leucine-rich repeat
mm9_v1_chrM_+_13543_13577	5.15777	PAX4.p2	
mm9_v1_chrM_+_13998_14016	5.13763	PAX4.p2	
mm9_v1_chr2_+_138104219_138104260	4.96063	PAX4.p2	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr17_+_70871444_70871503	4.72778	PAX4.p2	NM_001128180|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK161941|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK163689|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr1_-_83404659_83404774	4.50998	PAX4.p2	AK020841|Sphkap|77629|SPHK1 interactor, AKAP domain containing	AK034183|Sphkap|77629|SPHK1 interactor, AKAP domain containing	AK038638|Sphkap|77629|SPHK1 interactor, AKAP domain containing	BC069832|Sphkap|77629|SPHK1 interactor, AKAP domain containing	NM_172430|Sphkap|77629|SPHK1 interactor, AKAP domain containing
mm9_v1_chr4_+_97248556_97248685	4.46168	PAX4.p2	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr9_+_37175190_37175276	4.36167	PAX4.p2	AK013637|Hepacam|72927|hepatocyte cell adhesion molecule	NM_175189|Hepacam|72927|hepatocyte cell adhesion molecule	BC139057|Hepacam|72927|hepatocyte cell adhesion molecule	BC139058|Hepacam|72927|hepatocyte cell adhesion molecule	AK081154|Hepacam|72927|hepatocyte cell adhesion molecule	BC082537|Hepacam|72927|hepatocyte cell adhesion molecule
mm9_v1_chrM_+_14143_14189	4.16604	PAX4.p2	
mm9_v1_chr10_+_75716647_75716654	3.91054	PAX4.p2	AK134625|S100b|20203|S100 protein, beta polypeptide, neural
mm9_v1_chr15_-_78994753_78994921	3.90201	PAX4.p2	BC023356|Sox10|20665|SRY-box containing gene 10	BC051058|Sox10|20665|SRY-box containing gene 10	AK185165|Sox10|20665|SRY-box containing gene 10	AK193670|Sox10|20665|SRY-box containing gene 10	AK185297|Sox10|20665|SRY-box containing gene 10	BC025171|Sox10|20665|SRY-box containing gene 10	AK043220|Sox10|20665|SRY-box containing gene 10	U66141|Sox10|20665|SRY-box containing gene 10	AK042542|Sox10|20665|SRY-box containing gene 10	NM_011437|Sox10|20665|SRY-box containing gene 10
mm9_v1_chrM_-_13886_13905	3.70119	PAX4.p2	
mm9_v1_chr9_+_43851477_43851547	3.61221	PAX4.p2	M12380|Thy1|21838|thymus cell antigen 1, theta
mm9_v1_chr9_-_52484889_52484906	3.54101	PAX4.p2	AK053489|AI593442|330941|expressed sequence AI593442
mm9_v1_chrM_+_11027_11268	3.48575	PAX4.p2	
mm9_v1_chr11_+_78312621_78312770	3.44497	PAX4.p2	NM_011707|Vtn|22370|vitronectin	AK011736|Vtn|22370|vitronectin	AK090325|Vtn|22370|vitronectin	AK167494|Vtn|22370|vitronectin
mm9_v1_chr17_+_43705510_43705663	3.4348	PAX4.p2	AK005210|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	AK155678|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	BC010726|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	U34277|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	AK005158|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
mm9_v1_chr9_-_91260619_91260636	3.38302	PAX4.p2	NM_009573|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr12_+_110783593_110783620	3.36431	PAX4.p2	AK018105|Meg3|17263|maternally expressed 3	AK140201|Meg3|17263|maternally expressed 3
mm9_v1_chr6_+_141472906_141473070	3.23973	PAX4.p2	AK045782|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	NM_001177772|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	NM_021471|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	AK048926|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	AK161010|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	BC078456|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	AY007379|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1
mm9_v1_chrM_-_16187_16189	3.19642	PAX4.p2	
mm9_v1_chr11_-_99105293_99105435	3.01645	PAX4.p2	BC079890|Krt222|268481|keratin 222	AK031954|Krt222|268481|keratin 222	NM_172946|Krt222|268481|keratin 222	AK044068|Krt222|268481|keratin 222	AK138778|Krt222|268481|keratin 222
mm9_v1_chr17_-_90487479_90487653	2.94829	PAX4.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr1_+_155756310_155756313	2.83886	PAX4.p2	AK146463|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK158643|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159888|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK152497|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr4_+_15808409_15808487	2.80174	PAX4.p2	AK002635|Calb1|12307|calbindin 1	AK005081|Calb1|12307|calbindin 1	AK005243|Calb1|12307|calbindin 1	AK028050|Calb1|12307|calbindin 1	AK038856|Calb1|12307|calbindin 1	AK048517|Calb1|12307|calbindin 1	AK077499|Calb1|12307|calbindin 1	NM_009788|Calb1|12307|calbindin 1	AK028327|Calb1|12307|calbindin 1	AK078358|Calb1|12307|calbindin 1	M21531|Calb1|12307|calbindin 1	BC016421|Calb1|12307|calbindin 1
mm9_v1_chr5_+_75548337_75548416	2.8015	PAX4.p2	AK136490|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK035501|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK147267|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC020405|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC037467|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	M57683|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr10_-_80893737_80893882	2.68202	PAX4.p2	Y07693|Nfic|18029|nuclear factor I/C
mm9_v1_chr2_-_79296732_79296799	2.62415	PAX4.p2	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chrX_-_9240025_9240132	2.61003	PAX4.p2	BC030032|Dynlt3|67117|dynein light chain Tctex-type 3	AK010186|Dynlt3|67117|dynein light chain Tctex-type 3	AK018842|Dynlt3|67117|dynein light chain Tctex-type 3	AK088277|Dynlt3|67117|dynein light chain Tctex-type 3	NM_025975|Dynlt3|67117|dynein light chain Tctex-type 3
mm9_v1_chrM_+_3913_4410	2.5853	PAX4.p2	
mm9_v1_chr4_+_153516477_153516537	2.57646	PAX4.p2	NM_021499|Wdr8|59002|WD repeat domain 8	AK156969|Wdr8|59002|WD repeat domain 8	AK172690|Wdr8|59002|WD repeat domain 8	AB034911|Wdr8|59002|WD repeat domain 8	AK160331|Wdr8|59002|WD repeat domain 8	AK011773|Wdr8|59002|WD repeat domain 8	BC016120|Wdr8|59002|WD repeat domain 8	AK051688|Wdr8|59002|WD repeat domain 8
mm9_v1_chr3_-_90318178_90318313	2.5715	PAX4.p2	AK017279|S100a1|20193|S100 calcium binding protein A1	AK168822|S100a1|20193|S100 calcium binding protein A1	AK002721|S100a1|20193|S100 calcium binding protein A1	AF087687|S100a1|20193|S100 calcium binding protein A1	AK012578|S100a1|20193|S100 calcium binding protein A1	NM_011309|S100a1|20193|S100 calcium binding protein A1	BC005590|S100a1|20193|S100 calcium binding protein A1
mm9_v1_chrM_+_11812_11845	2.56133	PAX4.p2	
mm9_v1_chr10_-_63552994_63553028	2.51548	PAX4.p2	AK036366|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK163753|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035773|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035858|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035882|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	NM_178678|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK032485|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK036180|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3
mm9_v1_chr18_-_38760921_38761068	2.4367	PAX4.p2	BC050944|Spry4|24066|sprouty homolog 4 (Drosophila)	BC057005|Spry4|24066|sprouty homolog 4 (Drosophila)	NM_011898|Spry4|24066|sprouty homolog 4 (Drosophila)	AK139816|Spry4|24066|sprouty homolog 4 (Drosophila)	AB019280|Spry4|24066|sprouty homolog 4 (Drosophila)	AK037180|Spry4|24066|sprouty homolog 4 (Drosophila)	AK048122|Spry4|24066|sprouty homolog 4 (Drosophila)	AF176906|Spry4|24066|sprouty homolog 4 (Drosophila)
mm9_v1_chr3_+_90341208_90341304	2.42864	PAX4.p2	AK160178|S100a16|67860|S100 calcium binding protein A16	AK009762|S100a16|67860|S100 calcium binding protein A16	AK160512|S100a16|67860|S100 calcium binding protein A16	AK167006|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr6_+_113433507_113433615	2.42213	PAX4.p2	BC029065|Creld1|171508|cysteine-rich with EGF-like domains 1	AK155777|Creld1|171508|cysteine-rich with EGF-like domains 1	AB009020|Creld1|171508|cysteine-rich with EGF-like domains 1	BC010804|Creld1|171508|cysteine-rich with EGF-like domains 1	BC023893|Creld1|171508|cysteine-rich with EGF-like domains 1	NM_133930|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr5_-_121459496_121459582	2.27628	PAX4.p2	BC042585|Rph3a|19894|rabphilin 3A	NM_011286|Rph3a|19894|rabphilin 3A
mm9_v1_chr19_+_28909559_28909655	2.2545	PAX4.p2	AK018188|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK045632|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK051428|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK083097|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC065099|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC064797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	D43797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	NM_009199|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	U73521|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm9_v1_chr18_+_36441115_36441157	2.2512	PAX4.p2	AK075821|Pura|19290|purine rich element binding protein A
mm9_v1_chr9_-_112137285_112137344	2.22045	PAX4.p2	AK029467|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177619|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr1_-_53841997_53842058	2.19464	PAX4.p2	AK029551|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK165291|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AY092028|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK153108|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	BC006579|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK035693|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK076932|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK083332|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	NM_133810|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)
mm9_v1_chr10_-_127986187_127986227	2.078	PAX4.p2	NM_018860|Rpl41|67945|ribosomal protein L41
mm9_v1_chr2_-_147011990_147012137	2.01937	PAX4.p2	AK043561|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138159|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138160|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	U31566|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	AK141002|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_001077632|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_010919|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr15_-_78034648_78034687	1.97916	PAX4.p2	AK131986|Pvalb|19293|parvalbumin
mm9_v1_chr4_-_151665770_151665770	1.96089	PAX4.p2	AK090218|Hes3|15207|hairy and enhancer of split 3 (Drosophila)	NM_008237|Hes3|15207|hairy and enhancer of split 3 (Drosophila)
mm9_v1_chr15_+_99556127_99556246	1.93661	PAX4.p2	BC092142|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	AK002816|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	AK004378|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene
mm9_v1_chr16_-_36666078_36666195	1.91182	PAX4.p2	AF065897|Cd86|12524|CD86 antigen	AF065898|Cd86|12524|CD86 antigen	AF065899|Cd86|12524|CD86 antigen	AF065900|Cd86|12524|CD86 antigen	S70108|Cd86|12524|CD86 antigen	BC013807|Cd86|12524|CD86 antigen	L25606|Cd86|12524|CD86 antigen	AK079513|Cd86|12524|CD86 antigen	AK155710|Cd86|12524|CD86 antigen	AK170054|Cd86|12524|CD86 antigen	NM_019388|Cd86|12524|CD86 antigen	AK172548|Cd86|12524|CD86 antigen	AK172686|Cd86|12524|CD86 antigen
mm9_v1_chr6_+_134874663_134874674	1.90613	PAX4.p2	AK154276|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK169586|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr12_-_91976586_91976877	1.90577	PAX4.p2	AK032038|Dio2|13371|deiodinase, iodothyronine, type II	AK045607|Dio2|13371|deiodinase, iodothyronine, type II	AF177196|Dio2|13371|deiodinase, iodothyronine, type II	AF177197|Dio2|13371|deiodinase, iodothyronine, type II	AF093137|Dio2|13371|deiodinase, iodothyronine, type II	BC125383|Dio2|13371|deiodinase, iodothyronine, type II	BC125385|Dio2|13371|deiodinase, iodothyronine, type II	AF096875|Dio2|13371|deiodinase, iodothyronine, type II	NM_010050|Dio2|13371|deiodinase, iodothyronine, type II
mm9_v1_chr10_+_75716580_75716636	1.89642	PAX4.p2	NM_009115|S100b|20203|S100 protein, beta polypeptide, neural	BC061178|S100b|20203|S100 protein, beta polypeptide, neural	AK135083|S100b|20203|S100 protein, beta polypeptide, neural	AK161945|S100b|20203|S100 protein, beta polypeptide, neural
mm9_v1_chr10_-_76086045_76086072	1.89107	PAX4.p2	BC034414|Col6a2|12834|collagen, type VI, alpha 2	AK042826|Col6a2|12834|collagen, type VI, alpha 2	AK044870|Col6a2|12834|collagen, type VI, alpha 2	AK132540|Col6a2|12834|collagen, type VI, alpha 2	AK128938|Col6a2|12834|collagen, type VI, alpha 2
mm9_v1_chr5_+_91201521_91201531	1.86978	PAX4.p2	BC061111|Pf4|56744|platelet factor 4
mm9_v1_chr5_-_123582394_123582469	1.86098	PAX4.p2	AK038837|Rhof|23912|ras homolog gene family, member f	AK172212|Rhof|23912|ras homolog gene family, member f	BC096597|Rhof|23912|ras homolog gene family, member f	BC132355|Rhof|23912|ras homolog gene family, member f	BC132357|Rhof|23912|ras homolog gene family, member f
mm9_v1_chr18_-_64676090_64676141	1.77489	PAX4.p2	BC005473|Nars|70223|asparaginyl-tRNA synthetase
mm9_v1_chr10_+_21714491_21714500	1.76123	PAX4.p2	AK146062|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK167364|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AF139638|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AF205855|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr17_+_43705388_43705482	1.74515	PAX4.p2	AK051454|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	NM_013737|Pla2g7|27226|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
mm9_v1_chrM_+_11741_11742	1.74258	PAX4.p2	AK140457|ND5|17721|NADH dehydrogenase subunit 5
mm9_v1_chrX_+_138662725_138662809	1.68747	PAX4.p2	NM_172782|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK144349|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC064727|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK032102|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC068166|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC118503|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC094570|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr11_-_69761489_69761691	1.66746	PAX4.p2	AB008453|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	M23383|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	BC014282|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK138832|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK164310|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK137607|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK160882|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	NM_009204|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4
mm9_v1_chr15_+_33012972_33013051	1.63132	PAX4.p2	AF009513|Pgcp|54381|plasma glutamate carboxypeptidase	AK152145|Pgcp|54381|plasma glutamate carboxypeptidase	AK152139|Pgcp|54381|plasma glutamate carboxypeptidase	AK054422|Pgcp|54381|plasma glutamate carboxypeptidase	AK137164|Pgcp|54381|plasma glutamate carboxypeptidase	AK154361|Pgcp|54381|plasma glutamate carboxypeptidase	AK032972|Pgcp|54381|plasma glutamate carboxypeptidase	BC037067|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr19_+_46471385_46471515	1.6226	PAX4.p2	AJ131692|Sufu|24069|suppressor of fused homolog (Drosophila)	AK016976|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_001025391|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_015752|Sufu|24069|suppressor of fused homolog (Drosophila)	BC048168|Sufu|24069|suppressor of fused homolog (Drosophila)	BC056997|Sufu|24069|suppressor of fused homolog (Drosophila)	AK156410|Sufu|24069|suppressor of fused homolog (Drosophila)	AF134893|Sufu|24069|suppressor of fused homolog (Drosophila)	AJ308626|Sufu|24069|suppressor of fused homolog (Drosophila)	AK015885|Sufu|24069|suppressor of fused homolog (Drosophila)	AK047603|Sufu|24069|suppressor of fused homolog (Drosophila)
mm9_v1_chr11_+_121296252_121296285	1.59467	PAX4.p2	NM_001038699|Fn3k|63828|fructosamine 3 kinase	NM_022014|Fn3k|63828|fructosamine 3 kinase	AK010151|Fn3k|63828|fructosamine 3 kinase	BC064710|Fn3k|63828|fructosamine 3 kinase	AJ404616|Fn3k|63828|fructosamine 3 kinase	AK030362|Fn3k|63828|fructosamine 3 kinase	AK172235|Fn3k|63828|fructosamine 3 kinase	BC054374|Fn3k|63828|fructosamine 3 kinase
mm9_v1_chr3_+_87723608_87723648	1.59206	PAX4.p2	AK008117|Mrpl24|67707|mitochondrial ribosomal protein L24	AK008961|Mrpl24|67707|mitochondrial ribosomal protein L24
mm9_v1_chr11_+_54128404_54128494	1.56332	PAX4.p2	NM_001033599|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AY786360|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AY786362|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK032479|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK039380|Acsl6|216739|acyl-CoA synthetase long-chain family member 6
mm9_v1_chr2_+_153171730_153171874	1.53396	PAX4.p2	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr2_+_158492854_158492905	1.52325	PAX4.p2	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr11_-_106642357_106642481	1.52186	PAX4.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr15_-_78034565_78034624	1.5174	PAX4.p2	X54613|Pvalb|19293|parvalbumin	BC027424|Pvalb|19293|parvalbumin	NM_013645|Pvalb|19293|parvalbumin	AK005371|Pvalb|19293|parvalbumin	AK013561|Pvalb|19293|parvalbumin	AK002354|Pvalb|19293|parvalbumin
mm9_v1_chr4_-_82150687_82150887	1.49135	PAX4.p2	AY035852|Nfib|18028|nuclear factor I/B	AY035853|Nfib|18028|nuclear factor I/B	BC014290|Nfib|18028|nuclear factor I/B	BC023366|Nfib|18028|nuclear factor I/B	U57634|Nfib|18028|nuclear factor I/B
mm9_v1_chr7_+_51502089_51502113	1.47486	PAX4.p2	AK169789|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	NM_025880|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK036099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chrX_-_20194385_20194425	1.4693	PAX4.p2	AK028121|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr7_-_91234908_91235022	1.45727	PAX4.p2	BC116643|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	BC115873|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AB103331|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK036809|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK162689|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	NM_030728|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene
mm9_v1_chr15_-_34608458_34608547	1.45334	PAX4.p2	AK033975|Nipal2|223473|NIPA-like domain containing 2	NM_145469|Nipal2|223473|NIPA-like domain containing 2	BC016107|Nipal2|223473|NIPA-like domain containing 2	AK132530|Nipal2|223473|NIPA-like domain containing 2	AK087325|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr2_+_125860377_125860409	1.44793	PAX4.p2	AK037172|Fgf7|14178|fibroblast growth factor 7	NM_008008|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chrM_+_3844_3864	1.44234	PAX4.p2	
mm9_v1_chrM_-_14069_14070	1.43247	PAX4.p2	AK138272|ND6|17722|NADH dehydrogenase subunit 6	AK140300|ND6|17722|NADH dehydrogenase subunit 6
mm9_v1_chr5_-_138042267_138042299	1.41249	PAX4.p2	BC039620|Mospd3|68929|motile sperm domain containing 3	NM_030037|Mospd3|68929|motile sperm domain containing 3	BC034167|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr4_+_130469187_130469272	1.39533	PAX4.p2	AK171481|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089432|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171269|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171285|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171575|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172486|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171057|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171280|Laptm5|16792|lysosomal-associated protein transmembrane 5	U51239|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171571|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170690|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171250|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171053|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089508|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171149|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170867|Laptm5|16792|lysosomal-associated protein transmembrane 5	AF364050|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171270|Laptm5|16792|lysosomal-associated protein transmembrane 5	U29539|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK031802|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK050633|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK153877|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK163146|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171105|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171172|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171213|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171244|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171547|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172306|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172707|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089535|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171116|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171193|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171236|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK150299|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK152918|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK155744|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171274|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171562|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170438|Laptm5|16792|lysosomal-associated protein transmembrane 5	NM_010686|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC020993|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC055057|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC114403|Laptm5|16792|lysosomal-associated protein transmembrane 5
mm9_v1_chr10_+_78243274_78243338	1.39157	PAX4.p2	BC138120|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	BC138140|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
mm9_v1_chr13_+_21809496_21809529	1.36258	PAX4.p2	NM_178206|Hist1h3h|319152|histone cluster 1, H3h	BC107285|Hist1h3h|319152|histone cluster 1, H3h
mm9_v1_chr9_-_91260597_91260611	1.35547	PAX4.p2	BC063247|Zic1|22771|zinc finger protein of the cerebellum 1	AK159769|Zic1|22771|zinc finger protein of the cerebellum 1	AK139143|Zic1|22771|zinc finger protein of the cerebellum 1	BC060247|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr3_+_95733228_95733353	1.35199	PAX4.p2	U89345|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK168380|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	BC080684|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	BC005690|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK202920|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK076049|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr3_+_96361879_96362304	1.35184	PAX4.p2	AK089304|Txnip|56338|thioredoxin interacting protein	AK089403|Txnip|56338|thioredoxin interacting protein	NM_001009935|Txnip|56338|thioredoxin interacting protein	NM_023719|Txnip|56338|thioredoxin interacting protein	AK004653|Txnip|56338|thioredoxin interacting protein	AK082476|Txnip|56338|thioredoxin interacting protein	AK088870|Txnip|56338|thioredoxin interacting protein	AK089351|Txnip|56338|thioredoxin interacting protein	AK155517|Txnip|56338|thioredoxin interacting protein	AK171205|Txnip|56338|thioredoxin interacting protein	AK171312|Txnip|56338|thioredoxin interacting protein	AK171425|Txnip|56338|thioredoxin interacting protein	AK171456|Txnip|56338|thioredoxin interacting protein	AK171464|Txnip|56338|thioredoxin interacting protein	AK171527|Txnip|56338|thioredoxin interacting protein	BC031850|Txnip|56338|thioredoxin interacting protein	BC011212|Txnip|56338|thioredoxin interacting protein	AK187108|Txnip|56338|thioredoxin interacting protein	AF173681|Txnip|56338|thioredoxin interacting protein	AF282826|Txnip|56338|thioredoxin interacting protein	AK192038|Txnip|56338|thioredoxin interacting protein	AK214578|Txnip|56338|thioredoxin interacting protein
mm9_v1_chr6_-_126114938_126114977	1.34249	PAX4.p2	BC065785|Ntf3|18205|neurotrophin 3	AK132586|Ntf3|18205|neurotrophin 3	NM_001164035|Ntf3|18205|neurotrophin 3
mm9_v1_chr12_+_81744869_81744959	1.33372	PAX4.p2	BC058649|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr19_+_4100914_4101127	1.30992	PAX4.p2	BC048150|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	BC044893|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1
mm9_v1_chr16_+_96689322_96689354	1.29667	PAX4.p2	
mm9_v1_chr10_+_77532065_77532269	1.2866	PAX4.p2	AK041320|Icosl|50723|icos ligand	AK041421|Icosl|50723|icos ligand	BC029227|Icosl|50723|icos ligand	NM_015790|Icosl|50723|icos ligand	AF199027|Icosl|50723|icos ligand	AF216747|Icosl|50723|icos ligand	AF394451|Icosl|50723|icos ligand
mm9_v1_chr10_+_97028409_97028443	1.28584	PAX4.p2	AK075737|Lum|17022|lumican	AK085240|Lum|17022|lumican	AK164774|Lum|17022|lumican
mm9_v1_chr7_-_119301920_119301970	1.27642	PAX4.p2	BC050934|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	BC046304|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK013622|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK013054|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)
mm9_v1_chr17_+_35195979_35196038	1.26405	PAX4.p2	NM_001190449|Ddah2|51793|dimethylarginine dimethylaminohydrolase 2	NM_016765|Ddah2|51793|dimethylarginine dimethylaminohydrolase 2	BC003328|Ddah2|51793|dimethylarginine dimethylaminohydrolase 2	BC115555|Ddah2|51793|dimethylarginine dimethylaminohydrolase 2
mm9_v1_chr10_+_21714471_21714488	1.25804	PAX4.p2	NM_011361|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK086892|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK146037|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK159131|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr2_-_144096164_144096250	1.25648	PAX4.p2	AK159904|Snx5|69178|sorting nexin 5	AK167362|Snx5|69178|sorting nexin 5
mm9_v1_chr7_+_19576593_19576667	1.24638	PAX4.p2	NM_145579|Mypop|232934|Myb-related transcription factor, partner of profilin	M82902|Mypop|232934|Myb-related transcription factor, partner of profilin	AF364868|Mypop|232934|Myb-related transcription factor, partner of profilin
mm9_v1_chr8_-_47292863_47292905	1.23345	PAX4.p2	
mm9_v1_chr16_+_31428887_31428913	1.22416	PAX4.p2	AK137955|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	BC096457|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr6_-_131338282_131338457	1.22219	PAX4.p2	AF248546|Csda|56449|cold shock domain protein A	AF248547|Csda|56449|cold shock domain protein A	AF246224|Csda|56449|cold shock domain protein A	AK003145|Csda|56449|cold shock domain protein A	AK076041|Csda|56449|cold shock domain protein A	D14485|Csda|56449|cold shock domain protein A	BC048242|Csda|56449|cold shock domain protein A	BC062377|Csda|56449|cold shock domain protein A
mm9_v1_chr11_+_22872062_22872100	1.20906	PAX4.p2	AK165562|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
mm9_v1_chr9_+_43851466_43851476	1.20093	PAX4.p2	NM_009382|Thy1|21838|thymus cell antigen 1, theta
mm9_v1_chr10_+_87321789_87322010	1.19144	PAX4.p2	NM_001111275|Igf1|16000|insulin-like growth factor 1	NM_010512|Igf1|16000|insulin-like growth factor 1	AK050118|Igf1|16000|insulin-like growth factor 1	AK081019|Igf1|16000|insulin-like growth factor 1	AK165471|Igf1|16000|insulin-like growth factor 1	AY878192|Igf1|16000|insulin-like growth factor 1	AY878193|Igf1|16000|insulin-like growth factor 1	AK052033|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr11_+_70460758_70460819	1.18582	PAX4.p2	AK017523|Rnf167|70510|ring finger protein 167
mm9_v1_chr11_-_109334465_109334613	1.1815	PAX4.p2	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr2_-_84490666_84490763	1.17606	PAX4.p2	NM_001085453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC046589|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr14_-_104243541_104243687	1.1709	PAX4.p2	BC026553|Ednrb|13618|endothelin receptor type B
mm9_v1_chr4_+_126698539_126698547	1.16836	PAX4.p2	NM_023603|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr3_+_89240625_89240684	1.15136	PAX4.p2	NM_146131|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028858|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159422|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159448|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK160103|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159633|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028754|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC027771|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK170318|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC034200|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1
mm9_v1_chr6_-_136752898_136752939	1.14799	PAX4.p2	BC111813|Hist4h4|320332|histone cluster 4, H4	NM_175652|Hist4h4|320332|histone cluster 4, H4	AK045187|Hist4h4|320332|histone cluster 4, H4
mm9_v1_chr2_-_102741483_102741651	1.14212	PAX4.p2	J05163|Cd44|12505|CD44 antigen	CT010324|Cd44|12505|CD44 antigen	X66081|Cd44|12505|CD44 antigen	X66082|Cd44|12505|CD44 antigen	X66083|Cd44|12505|CD44 antigen	X66084|Cd44|12505|CD44 antigen	BC005676|Cd44|12505|CD44 antigen	AJ251594|Cd44|12505|CD44 antigen	M30655|Cd44|12505|CD44 antigen	AK154411|Cd44|12505|CD44 antigen	AK166320|Cd44|12505|CD44 antigen	AK087472|Cd44|12505|CD44 antigen	AK152099|Cd44|12505|CD44 antigen	AK162720|Cd44|12505|CD44 antigen	AK144125|Cd44|12505|CD44 antigen	BC051388|Cd44|12505|CD44 antigen
mm9_v1_chr5_+_145888588_145888809	1.12944	PAX4.p2	AK192837|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B
mm9_v1_chr11_+_94797565_94797682	1.10175	PAX4.p2	AK159283|Col1a1|12842|collagen, type I, alpha 1	AK159285|Col1a1|12842|collagen, type I, alpha 1	AK132180|Col1a1|12842|collagen, type I, alpha 1	AK158011|Col1a1|12842|collagen, type I, alpha 1	BC059281|Col1a1|12842|collagen, type I, alpha 1	BC050014|Col1a1|12842|collagen, type I, alpha 1	NM_007742|Col1a1|12842|collagen, type I, alpha 1	U08020|Col1a1|12842|collagen, type I, alpha 1
mm9_v1_chr17_-_66121883_66122091	1.09582	PAX4.p2	AB232617|Rab31|106572|RAB31, member RAS oncogene family	AK159095|Rab31|106572|RAB31, member RAS oncogene family	AK166151|Rab31|106572|RAB31, member RAS oncogene family	AK051270|Rab31|106572|RAB31, member RAS oncogene family	BC013063|Rab31|106572|RAB31, member RAS oncogene family	AK156677|Rab31|106572|RAB31, member RAS oncogene family	NM_133685|Rab31|106572|RAB31, member RAS oncogene family
mm9_v1_chr11_+_100277007_100277076	1.09576	PAX4.p2	NM_001163481|Fkbp10|14230|FK506 binding protein 10	NM_010221|Fkbp10|14230|FK506 binding protein 10	L07063|Fkbp10|14230|FK506 binding protein 10	AK144185|Fkbp10|14230|FK506 binding protein 10	BC029546|Fkbp10|14230|FK506 binding protein 10	AK019446|Fkbp10|14230|FK506 binding protein 10
mm9_v1_chr1_-_133964485_133964532	1.08447	PAX4.p2	AK079372|Mfsd4|213006|major facilitator superfamily domain containing 4	BC058790|Mfsd4|213006|major facilitator superfamily domain containing 4	AK044667|Mfsd4|213006|major facilitator superfamily domain containing 4	AK085484|Mfsd4|213006|major facilitator superfamily domain containing 4	BC080198|Mfsd4|213006|major facilitator superfamily domain containing 4	AK038882|Mfsd4|213006|major facilitator superfamily domain containing 4
mm9_v1_chr1_+_63492447_63492511	1.07734	PAX4.p2	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr3_+_121426422_121426632	1.07577	PAX4.p2	BC024886|F3|14066|coagulation factor III	NM_010171|F3|14066|coagulation factor III	BC016397|F3|14066|coagulation factor III	M26071|F3|14066|coagulation factor III	AK137642|F3|14066|coagulation factor III	AK144872|F3|14066|coagulation factor III	M57896|F3|14066|coagulation factor III	CT010367|F3|14066|coagulation factor III
mm9_v1_chr7_-_135137189_135137272	1.07305	PAX4.p2	AF310104|Pycard|66824|PYD and CARD domain containing	BC008252|Pycard|66824|PYD and CARD domain containing	AB032249|Pycard|66824|PYD and CARD domain containing	AK152677|Pycard|66824|PYD and CARD domain containing	AK007742|Pycard|66824|PYD and CARD domain containing	AK009852|Pycard|66824|PYD and CARD domain containing	AK018682|Pycard|66824|PYD and CARD domain containing
mm9_v1_chr7_-_87857062_87857123	1.06645	PAX4.p2	
mm9_v1_chr11_+_92960603_92960762	1.04349	PAX4.p2	AK036003|Car10|72605|carbonic anhydrase 10	NM_028296|Car10|72605|carbonic anhydrase 10	AK132222|Car10|72605|carbonic anhydrase 10
mm9_v1_chr9_+_92352215_92352231	1.02708	PAX4.p2	AK035919|Plscr4|235527|phospholipid scramblase 4	AK045372|Plscr4|235527|phospholipid scramblase 4	AK165919|Plscr4|235527|phospholipid scramblase 4	NM_178711|Plscr4|235527|phospholipid scramblase 4	AK035878|Plscr4|235527|phospholipid scramblase 4
mm9_v1_chr17_-_23782209_23782235	1.00726	PAX4.p2	BC059059|Mmp25|240047|matrix metallopeptidase 25	AK154458|Mmp25|240047|matrix metallopeptidase 25	NM_001033339|Mmp25|240047|matrix metallopeptidase 25
mm9_v1_chr10_-_79209301_79209350	0.97886	PAX4.p2	BC110697|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK154729|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK053356|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK154181|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK047545|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK085666|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK128956|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	BC117939|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	BC117940|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK030039|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	NM_172551|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)
mm9_v1_chr5_-_120953567_120953653	0.967025	PAX4.p2	AK030234|Plbd2|71772|phospholipase B domain containing 2	BC026395|Plbd2|71772|phospholipase B domain containing 2	BC038605|Plbd2|71772|phospholipase B domain containing 2	AF217003|Plbd2|71772|phospholipase B domain containing 2	BC060095|Plbd2|71772|phospholipase B domain containing 2	AK164220|Plbd2|71772|phospholipase B domain containing 2	AK170631|Plbd2|71772|phospholipase B domain containing 2	BC048826|Plbd2|71772|phospholipase B domain containing 2	AK043608|Plbd2|71772|phospholipase B domain containing 2	AK046937|Plbd2|71772|phospholipase B domain containing 2	AK150201|Plbd2|71772|phospholipase B domain containing 2	AK170387|Plbd2|71772|phospholipase B domain containing 2	AK032930|Plbd2|71772|phospholipase B domain containing 2	AK042089|Plbd2|71772|phospholipase B domain containing 2	AK029813|Plbd2|71772|phospholipase B domain containing 2	NM_023625|Plbd2|71772|phospholipase B domain containing 2	AK004973|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr11_+_92959670_92959804	0.958558	PAX4.p2	AK012302|Car10|72605|carbonic anhydrase 10	AB080741|Car10|72605|carbonic anhydrase 10	BC066111|Car10|72605|carbonic anhydrase 10	AK038695|Car10|72605|carbonic anhydrase 10
mm9_v1_chr1_-_67085155_67085378	0.951173	PAX4.p2	AK182687|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AK186065|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AK210427|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1
mm9_v1_chr17_+_35196041_35196046	0.949396	PAX4.p2	AF004106|Ddah2|51793|dimethylarginine dimethylaminohydrolase 2
mm9_v1_chr12_-_11443284_11443537	0.94711	PAX4.p2	BC046226|Vsnl1|26950|visinin-like 1	AK144454|Vsnl1|26950|visinin-like 1	AK160224|Vsnl1|26950|visinin-like 1	AJ489331|Vsnl1|26950|visinin-like 1	NM_012038|Vsnl1|26950|visinin-like 1
mm9_v1_chrM_+_3320_3438	0.939032	PAX4.p2	
mm9_v1_chr19_+_4099973_4100180	0.936092	PAX4.p2	AK155377|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AF006467|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	NM_001136078|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK177924|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK179862|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK181080|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK188056|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK188611|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK208861|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK210105|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK210471|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK212060|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK187966|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1
mm9_v1_chr18_+_21159829_21159841	0.93449	PAX4.p2	AB025010|Rnf138|56515|ring finger protein 138	AB025011|Rnf138|56515|ring finger protein 138	NM_019706|Rnf138|56515|ring finger protein 138	NM_207623|Rnf138|56515|ring finger protein 138
mm9_v1_chr16_-_4559511_4559853	0.925233	PAX4.p2	AK053091|Tcfap4|83383|transcription factor AP4	BC054777|Tcfap4|83383|transcription factor AP4	BC047270|Tcfap4|83383|transcription factor AP4	AF161262|Tcfap4|83383|transcription factor AP4	NM_031182|Tcfap4|83383|transcription factor AP4	AK166424|Tcfap4|83383|transcription factor AP4
mm9_v1_chr5_+_44260035_44260114	0.919238	PAX4.p2	AK150412|Cd38|12494|CD38 antigen	AK153215|Cd38|12494|CD38 antigen	AK151016|Cd38|12494|CD38 antigen	NM_007646|Cd38|12494|CD38 antigen	AK040498|Cd38|12494|CD38 antigen	AK038439|Cd38|12494|CD38 antigen	BC046312|Cd38|12494|CD38 antigen	AK042970|Cd38|12494|CD38 antigen	AK043442|Cd38|12494|CD38 antigen	AK151918|Cd38|12494|CD38 antigen	AK153334|Cd38|12494|CD38 antigen	L11332|Cd38|12494|CD38 antigen	CT010386|Cd38|12494|CD38 antigen
mm9_v1_chr14_-_30534966_30535111	0.908133	PAX4.p2	AJ010949|Cacna2d3|12294|calcium channel, voltage-dependent, alpha2/delta subunit 3	NM_009785|Cacna2d3|12294|calcium channel, voltage-dependent, alpha2/delta subunit 3
mm9_v1_chr2_+_174167321_174167402	0.902845	PAX4.p2	
mm9_v1_chrX_-_20194364_20194382	0.888005	PAX4.p2	BC096047|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11	Y08702|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr5_+_124889925_124890006	0.885935	PAX4.p2	NM_030241|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK030904|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK088097|Setd8|67956|SET domain containing (lysine methyltransferase) 8	BC108333|Setd8|67956|SET domain containing (lysine methyltransferase) 8
mm9_v1_chr8_+_107951514_107951547	0.875441	PAX4.p2	AK133042|Lrrc36|270091|leucine rich repeat containing 36	NM_001033371|Lrrc36|270091|leucine rich repeat containing 36	NM_001170789|Lrrc36|270091|leucine rich repeat containing 36	BC150957|Lrrc36|270091|leucine rich repeat containing 36	BC172120|Lrrc36|270091|leucine rich repeat containing 36
mm9_v1_chr19_-_10557362_10557417	0.873147	PAX4.p2	BC118523|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	AY032666|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	NM_133689|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	AK005821|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene	AK016325|4930579J09Rik|67752|RIKEN cDNA 4930579J09 gene
mm9_v1_chr10_+_101974855_101975051	0.86948	PAX4.p2	AK041688|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	NM_146240|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	BC028805|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	AK086855|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	AK033464|Rassf9|237504|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
mm9_v1_chr11_-_119908236_119908480	0.864497	PAX4.p2	AY236858|Aatk|11302|apoptosis-associated tyrosine kinase	AY236859|Aatk|11302|apoptosis-associated tyrosine kinase	AB288871|Aatk|11302|apoptosis-associated tyrosine kinase	AB093253|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198785|Aatk|11302|apoptosis-associated tyrosine kinase	NM_007377|Aatk|11302|apoptosis-associated tyrosine kinase	BC042837|Aatk|11302|apoptosis-associated tyrosine kinase	BC052323|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr4_+_130168140_130168255	0.86433	PAX4.p2	AK009389|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	AK160181|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr10_-_30375572_30375672	0.856917	PAX4.p2	BC080742|Ncoa7|211329|nuclear receptor coactivator 7	AK033503|Ncoa7|211329|nuclear receptor coactivator 7	AK171679|Ncoa7|211329|nuclear receptor coactivator 7	BC058572|Ncoa7|211329|nuclear receptor coactivator 7	BC080670|Ncoa7|211329|nuclear receptor coactivator 7	BC049997|Ncoa7|211329|nuclear receptor coactivator 7	AK165098|Ncoa7|211329|nuclear receptor coactivator 7	AK042369|Ncoa7|211329|nuclear receptor coactivator 7	EF602028|Ncoa7|211329|nuclear receptor coactivator 7	NM_001111267|Ncoa7|211329|nuclear receptor coactivator 7
mm9_v1_chr5_-_115140869_115140951	0.853373	PAX4.p2	AF209703|Gltp|56356|glycolipid transfer protein	BC053729|Gltp|56356|glycolipid transfer protein	AK157313|Gltp|56356|glycolipid transfer protein	BC016584|Gltp|56356|glycolipid transfer protein	NM_019821|Gltp|56356|glycolipid transfer protein
mm9_v1_chr19_+_4125894_4126113	0.850707	PAX4.p2	AK009263|Tmem134|66990|transmembrane protein 134	AK010323|Tmem134|66990|transmembrane protein 134	AK166519|Tmem134|66990|transmembrane protein 134	NM_001078649|Tmem134|66990|transmembrane protein 134	NM_025889|Tmem134|66990|transmembrane protein 134	AK002220|Tmem134|66990|transmembrane protein 134	BC026765|Tmem134|66990|transmembrane protein 134	AK009745|Tmem134|66990|transmembrane protein 134	AK129014|Tmem134|66990|transmembrane protein 134	AK008515|Tmem134|66990|transmembrane protein 134
mm9_v1_chr18_+_61715202_61715299	0.848797	PAX4.p2	BC048081|Csnk1a1|93687|casein kinase 1, alpha 1	BC019740|Csnk1a1|93687|casein kinase 1, alpha 1	NM_146087|Csnk1a1|93687|casein kinase 1, alpha 1	BC025439|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr7_-_112900699_112900744	0.847255	PAX4.p2	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr8_-_88063071_88063191	0.847109	PAX4.p2	
mm9_v1_chr7_-_53435334_53435402	0.842884	PAX4.p2	BC141411|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	AK086472|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	NM_011510|Abcc8|20927|ATP-binding cassette, sub-family C (CFTR/MRP), member 8
mm9_v1_chr12_-_88541151_88541189	0.830145	PAX4.p2	AK147378|Tmed8|382620|transmembrane emp24 domain containing 8	NM_001033475|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr19_-_6015778_6015825	0.826425	PAX4.p2	AK171405|Capn1|12333|calpain 1	NM_001110504|Capn1|12333|calpain 1
mm9_v1_chr1_-_80272987_80273120	0.819231	PAX4.p2	
mm9_v1_chr6_-_60779848_60779848	0.799716	PAX4.p2	AF179273|Snca|20617|synuclein, alpha	NM_009221|Snca|20617|synuclein, alpha
mm9_v1_chr9_-_57006034_57006159	0.799387	PAX4.p2	BC055798|Commd4|66199|COMM domain containing 4	AK172194|Commd4|66199|COMM domain containing 4	BC033438|Commd4|66199|COMM domain containing 4	BC037364|Commd4|66199|COMM domain containing 4	AK009802|Commd4|66199|COMM domain containing 4	BC049222|Commd4|66199|COMM domain containing 4	AK004174|Commd4|66199|COMM domain containing 4	NM_025417|Commd4|66199|COMM domain containing 4
mm9_v1_chr11_+_98769162_98769202	0.796347	PAX4.p2	AK162669|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK075975|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK085020|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK012192|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	BC052434|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_001025779|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr3_+_137806778_137806871	0.790889	PAX4.p2	AK008262|2010015P12Rik|70189|RIKEN cDNA 2010015P12 gene
mm9_v1_chr7_-_24993103_24993167	0.784338	PAX4.p2	BC005456|Zfp111|56707|zinc finger protein 111	AK135436|Zfp111|56707|zinc finger protein 111	NM_019940|Zfp111|56707|zinc finger protein 111
mm9_v1_chr8_-_47292973_47292977	0.781147	PAX4.p2	AK186988|Slc25a4|11739|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm9_v1_chr2_-_163470826_163470836	0.772837	PAX4.p2	BC011295|Serinc3|26943|serine incorporator 3
mm9_v1_chr3_-_116671869_116671896	0.771632	PAX4.p2	NM_023245|Palmd|114301|palmdelphin
mm9_v1_chr8_-_113329771_113329802	0.770387	PAX4.p2	AK008082|Il34|76527|interleukin 34	BC016254|Il34|76527|interleukin 34	NM_001135100|Il34|76527|interleukin 34	NM_029646|Il34|76527|interleukin 34
mm9_v1_chr5_+_118292144_118292194	0.764674	PAX4.p2	BC066101|Nos1|18125|nitric oxide synthase 1, neuronal	BC083183|Nos1|18125|nitric oxide synthase 1, neuronal
mm9_v1_chr10_+_80720191_80720236	0.761237	PAX4.p2	AK018182|Matk|17179|megakaryocyte-associated tyrosine kinase	AK013606|Matk|17179|megakaryocyte-associated tyrosine kinase	S77473|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr13_-_22133203_22133232	0.753242	PAX4.p2	BC052219|Hist1h4i|319158|histone cluster 1, H4i	BC125598|Hist1h4i|319158|histone cluster 1, H4i	BC125600|Hist1h4i|319158|histone cluster 1, H4i	BC019757|Hist1h4i|319158|histone cluster 1, H4i	BC092144|Hist1h4i|319158|histone cluster 1, H4i	NM_175656|Hist1h4i|319158|histone cluster 1, H4i	AK011560|Hist1h4i|319158|histone cluster 1, H4i
mm9_v1_chrX_+_20271802_20271845	0.752458	PAX4.p2	AK214881|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr19_+_8692485_8692668	0.744662	PAX4.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr3_+_32428424_32428479	0.741588	PAX4.p2	AK046313|Mfn1|67414|mitofusin 1	BC056641|Mfn1|67414|mitofusin 1
mm9_v1_chr14_+_60997104_60997126	0.735245	PAX4.p2	NM_001164705|Fam123a|72125|family with sequence similarity 123, member A	NM_028113|Fam123a|72125|family with sequence similarity 123, member A
mm9_v1_chr19_+_37450854_37450917	0.734456	PAX4.p2	AK147754|Kif11|16551|kinesin family member 11	BC060670|Kif11|16551|kinesin family member 11	NM_010615|Kif11|16551|kinesin family member 11	AK083324|Kif11|16551|kinesin family member 11
mm9_v1_chr16_-_18426446_18426681	0.731096	PAX4.p2	AK148311|Comt|12846|catechol-O-methyltransferase	BC010402|Comt|12846|catechol-O-methyltransferase	AF076156|Comt|12846|catechol-O-methyltransferase
mm9_v1_chr17_+_53706556_53706657	0.729636	PAX4.p2	AK132486|Kat2b|18519|K(lysine) acetyltransferase 2B	BC138195|Kat2b|18519|K(lysine) acetyltransferase 2B	BC145896|Kat2b|18519|K(lysine) acetyltransferase 2B	BC082581|Kat2b|18519|K(lysine) acetyltransferase 2B	AF254442|Kat2b|18519|K(lysine) acetyltransferase 2B
mm9_v1_chr15_+_78427476_78427603	0.728953	PAX4.p2	NM_028195|Cyth4|72318|cytohesin 4	BC139054|Cyth4|72318|cytohesin 4	BC139056|Cyth4|72318|cytohesin 4	BC145528|Cyth4|72318|cytohesin 4	AK220198|Cyth4|72318|cytohesin 4	AF079972|Cyth4|72318|cytohesin 4	AK036679|Cyth4|72318|cytohesin 4	AK152306|Cyth4|72318|cytohesin 4	AK157026|Cyth4|72318|cytohesin 4	AK152909|Cyth4|72318|cytohesin 4	AK030956|Cyth4|72318|cytohesin 4	AK151402|Cyth4|72318|cytohesin 4	BC018505|Cyth4|72318|cytohesin 4
mm9_v1_chr2_-_37502738_37502804	0.725842	PAX4.p2	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr15_-_98593505_98593647	0.725577	PAX4.p2	D87900|Arf3|11842|ADP-ribosylation factor 3	BC014778|Arf3|11842|ADP-ribosylation factor 3	NM_007478|Arf3|11842|ADP-ribosylation factor 3	AK171354|Arf3|11842|ADP-ribosylation factor 3	BC024935|Arf3|11842|ADP-ribosylation factor 3	AK154948|Arf3|11842|ADP-ribosylation factor 3	AK165176|Arf3|11842|ADP-ribosylation factor 3	AK151296|Arf3|11842|ADP-ribosylation factor 3
mm9_v1_chr5_-_143665474_143665607	0.721724	PAX4.p2	
mm9_v1_chrX_+_20374922_20374939	0.718481	PAX4.p2	AK034861|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog
mm9_v1_chr12_-_32893074_32893513	0.718397	PAX4.p2	BC051246|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK137620|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_001146201|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AJ249280|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_020272|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK137470|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK040543|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	AK132553|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide	NM_001146200|Pik3cg|30955|phosphoinositide-3-kinase, catalytic, gamma polypeptide
mm9_v1_chr13_-_23790310_23790328	0.716999	PAX4.p2	BC115451|Hist1h4c|319155|histone cluster 1, H4c	BC115450|Hist1h4c|319155|histone cluster 1, H4c	BC139809|Hist1h4c|319155|histone cluster 1, H4c	NM_178208|Hist1h4c|319155|histone cluster 1, H4c
mm9_v1_chr4_+_98590565_98590631	0.716155	PAX4.p2	BC018179|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr19_+_7631935_7632013	0.710904	PAX4.p2	AK163505|Pla2g16|225845|phospholipase A2, group XVI	NM_139269|Pla2g16|225845|phospholipase A2, group XVI	AX775891|Pla2g16|225845|phospholipase A2, group XVI	AK052657|Pla2g16|225845|phospholipase A2, group XVI	AK039703|Pla2g16|225845|phospholipase A2, group XVI	AK042007|Pla2g16|225845|phospholipase A2, group XVI	BC024581|Pla2g16|225845|phospholipase A2, group XVI
mm9_v1_chr15_+_78757148_78757164	0.707412	PAX4.p2	NM_008495|Lgals1|16852|lectin, galactose binding, soluble 1	X66532|Lgals1|16852|lectin, galactose binding, soluble 1	AK004298|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr1_-_74982118_74982188	0.707263	PAX4.p2	BC150939|Ccdc108|241116|coiled-coil domain containing 108	AK038623|Ccdc108|241116|coiled-coil domain containing 108	AK046272|Ccdc108|241116|coiled-coil domain containing 108	AK133278|Ccdc108|241116|coiled-coil domain containing 108	NM_001039495|Ccdc108|241116|coiled-coil domain containing 108
mm9_v1_chr16_-_4879787_4879850	0.702186	PAX4.p2	BC013706|Fam100a|207740|family with sequence similarity 100, member A	BC064081|Fam100a|207740|family with sequence similarity 100, member A	BC056472|Fam100a|207740|family with sequence similarity 100, member A	AK005316|Fam100a|207740|family with sequence similarity 100, member A	NM_145359|Fam100a|207740|family with sequence similarity 100, member A
mm9_v1_chr5_-_104450856_104450959	0.697316	PAX4.p2	AK049355|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11
mm9_v1_chr16_+_45158943_45159161	0.69669	PAX4.p2	AK078877|Atg3|67841|autophagy-related 3 (yeast)	BC010809|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr12_-_88488272_88488550	0.694496	PAX4.p2	AK043713|Pomt2|217734|protein-O-mannosyltransferase 2	AK050915|Pomt2|217734|protein-O-mannosyltransferase 2	BC079589|Pomt2|217734|protein-O-mannosyltransferase 2	BC052045|Pomt2|217734|protein-O-mannosyltransferase 2	BC062965|Pomt2|217734|protein-O-mannosyltransferase 2	AY090482|Pomt2|217734|protein-O-mannosyltransferase 2	AF246235|Pomt2|217734|protein-O-mannosyltransferase 2	AK043573|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr4_-_63707964_63707973	0.692315	PAX4.p2	AK085667|Tnc|21923|tenascin C
mm9_v1_chr14_+_60997156_60997209	0.683196	PAX4.p2	BC056350|Fam123a|72125|family with sequence similarity 123, member A	AK139177|Fam123a|72125|family with sequence similarity 123, member A	AK032651|Fam123a|72125|family with sequence similarity 123, member A	AK011185|Fam123a|72125|family with sequence similarity 123, member A
mm9_v1_chr5_+_75548309_75548318	0.661406	PAX4.p2	NM_011058|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK081664|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr11_+_120094240_120094260	0.656073	PAX4.p2	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr13_-_30637108_30637234	0.655108	PAX4.p2	AK012180|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK003966|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK153139|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	NM_025710|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK014470|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	BC019934|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	BC047125|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK152391|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
mm9_v1_chr8_-_113824073_113824198	0.653403	PAX4.p2	AK137698|Rfwd3|234736|ring finger and WD repeat domain 3	BC096602|Rfwd3|234736|ring finger and WD repeat domain 3	AK146451|Rfwd3|234736|ring finger and WD repeat domain 3	BC018533|Rfwd3|234736|ring finger and WD repeat domain 3	AK137499|Rfwd3|234736|ring finger and WD repeat domain 3	AK139032|Rfwd3|234736|ring finger and WD repeat domain 3	BC023694|Rfwd3|234736|ring finger and WD repeat domain 3	NM_146218|Rfwd3|234736|ring finger and WD repeat domain 3
mm9_v1_chr7_-_4704436_4704695	0.652199	PAX4.p2	CT010366|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC048670|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183406|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AK160152|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125562|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125564|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC145201|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107296|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107297|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AY152400|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183405|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2
mm9_v1_chr4_+_138012860_138012969	0.645689	PAX4.p2	AK021100|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr15_-_82074765_82074852	0.640997	PAX4.p2	NM_001080158|Cenpm|66570|centromere protein M
mm9_v1_chr17_-_10512217_10512250	0.638618	PAX4.p2	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr1_-_165242744_165242943	0.632088	PAX4.p2	AK031075|Prrx1|18933|paired related homeobox 1	AB221686|Prrx1|18933|paired related homeobox 1	X59725|Prrx1|18933|paired related homeobox 1	L06502|Prrx1|18933|paired related homeobox 1
mm9_v1_chr7_-_105509797_105509909	0.631998	PAX4.p2	AK035461|Tsku|244152|tsukushin	AK053973|Tsku|244152|tsukushin	AK137208|Tsku|244152|tsukushin	NM_001024619|Tsku|244152|tsukushin	NM_001168540|Tsku|244152|tsukushin	NM_001168541|Tsku|244152|tsukushin	NM_001168539|Tsku|244152|tsukushin
mm9_v1_chr8_+_24521967_24522003	0.630968	PAX4.p2	AK088868|Sfrp1|20377|secreted frizzled-related protein 1	NM_013834|Sfrp1|20377|secreted frizzled-related protein 1	BC094662|Sfrp1|20377|secreted frizzled-related protein 1	U88566|Sfrp1|20377|secreted frizzled-related protein 1	BC024495|Sfrp1|20377|secreted frizzled-related protein 1
mm9_v1_chr17_+_74888823_74888973	0.62959	PAX4.p2	AK166347|Yipf4|67864|Yip1 domain family, member 4	AK009618|Yipf4|67864|Yip1 domain family, member 4	AK083301|Yipf4|67864|Yip1 domain family, member 4	NM_026417|Yipf4|67864|Yip1 domain family, member 4	AK017721|Yipf4|67864|Yip1 domain family, member 4	AK017722|Yipf4|67864|Yip1 domain family, member 4	AK159227|Yipf4|67864|Yip1 domain family, member 4	BC003936|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr11_-_109583524_109583607	0.622818	PAX4.p2	BC029169|Fam20a|208659|family with sequence similarity 20, member A	NM_153782|Fam20a|208659|family with sequence similarity 20, member A	AK142932|Fam20a|208659|family with sequence similarity 20, member A
mm9_v1_chr17_+_33661120_33661188	0.622023	PAX4.p2	BC082773|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK042525|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK046333|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK034843|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK034565|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK076334|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	NM_172619|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	BC056427|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	BC100558|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
mm9_v1_chr18_+_32322742_32322855	0.612093	PAX4.p2	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr3_-_73512139_73512177	0.606719	PAX4.p2	AK052200|Bche|12038|butyrylcholinesterase	BC099977|Bche|12038|butyrylcholinesterase
mm9_v1_chr2_-_25430363_25430452	0.605128	PAX4.p2	BC028657|Phpt1|75454|phosphohistidine phosphatase 1	AK005756|Phpt1|75454|phosphohistidine phosphatase 1	NM_029293|Phpt1|75454|phosphohistidine phosphatase 1	AK154580|Phpt1|75454|phosphohistidine phosphatase 1
mm9_v1_chr2_-_165709697_165709718	0.603678	PAX4.p2	AK003657|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr2_-_144096253_144096308	0.603399	PAX4.p2	AK007676|Snx5|69178|sorting nexin 5	AK029463|Snx5|69178|sorting nexin 5	NM_024225|Snx5|69178|sorting nexin 5
mm9_v1_chr5_+_67067359_67067456	0.602841	PAX4.p2	NM_011670|Uchl1|22223|ubiquitin carboxy-terminal hydrolase L1
mm9_v1_chr5_+_64203750_64203816	0.60278	PAX4.p2	AK159779|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	BC004797|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr10_-_126700105_126700237	0.600248	PAX4.p2	AF067179|Kif5a|16572|kinesin family member 5A	AK147660|Kif5a|16572|kinesin family member 5A	BC058396|Kif5a|16572|kinesin family member 5A	AK147707|Kif5a|16572|kinesin family member 5A	BC027115|Kif5a|16572|kinesin family member 5A	AK147352|Kif5a|16572|kinesin family member 5A
mm9_v1_chr15_-_77137015_77137087	0.599352	PAX4.p2	BC027263|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr18_-_64676144_64676158	0.598474	PAX4.p2	BC052849|Nars|70223|asparaginyl-tRNA synthetase
mm9_v1_chr10_-_17954752_17954810	0.594586	PAX4.p2	AK028075|Ccdc28a|215814|coiled-coil domain containing 28A	BC013553|Ccdc28a|215814|coiled-coil domain containing 28A	BC027759|Ccdc28a|215814|coiled-coil domain containing 28A	AK148447|Ccdc28a|215814|coiled-coil domain containing 28A	NM_144820|Ccdc28a|215814|coiled-coil domain containing 28A
mm9_v1_chr3_-_115417685_115417834	0.590972	PAX4.p2	BC051023|S1pr1|13609|sphingosine-1-phosphate receptor 1	AK146501|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr4_+_149656024_149656024	0.581813	PAX4.p2	NM_001085492|Rere|68703|arginine glutamic acid dipeptide (RE) repeats
mm9_v1_chr2_+_163843294_163843512	0.578403	PAX4.p2	AK206846|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK207996|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK212148|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK214843|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK215126|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK219468|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr4_+_62360705_62360777	0.577186	PAX4.p2	AK084729|Rgs3|50780|regulator of G-protein signaling 3	AK171666|Rgs3|50780|regulator of G-protein signaling 3	AK158257|Rgs3|50780|regulator of G-protein signaling 3	AF215669|Rgs3|50780|regulator of G-protein signaling 3
mm9_v1_chr15_-_83936038_83936094	0.575068	PAX4.p2	AK010293|Sult4a1|29859|sulfotransferase family 4A, member 1	AK003034|Sult4a1|29859|sulfotransferase family 4A, member 1	AF059257|Sult4a1|29859|sulfotransferase family 4A, member 1	BC051132|Sult4a1|29859|sulfotransferase family 4A, member 1	AK046368|Sult4a1|29859|sulfotransferase family 4A, member 1	AK032195|Sult4a1|29859|sulfotransferase family 4A, member 1	AK159034|Sult4a1|29859|sulfotransferase family 4A, member 1
mm9_v1_chr6_-_59376283_59376287	0.572463	PAX4.p2	AK050148|Gprin3|243385|GPRIN family member 3	NM_183183|Gprin3|243385|GPRIN family member 3	AK173336|Gprin3|243385|GPRIN family member 3
mm9_v1_chr16_+_33725541_33725620	0.570167	PAX4.p2	BC076596|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr16_+_34921598_34921714	0.569902	PAX4.p2	AY237727|Mylk|107589|myosin, light polypeptide kinase	BC045197|Mylk|107589|myosin, light polypeptide kinase	AK078556|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr11_-_18918923_18918971	0.568553	PAX4.p2	AK032947|Meis1|17268|Meis homeobox 1	AK049720|Meis1|17268|Meis homeobox 1	BC023689|Meis1|17268|Meis homeobox 1	AK168684|Meis1|17268|Meis homeobox 1	AK134321|Meis1|17268|Meis homeobox 1	AK140748|Meis1|17268|Meis homeobox 1	NM_001193271|Meis1|17268|Meis homeobox 1	NM_010789|Meis1|17268|Meis homeobox 1
mm9_v1_chr4_+_98590457_98590500	0.565411	PAX4.p2	AK080882|Usp1|230484|ubiquitin specific peptidase 1	NM_146144|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr5_+_115392192_115392243	0.563105	PAX4.p2	AK135000|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	BC031162|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	NM_028211|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK008740|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK159360|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene
mm9_v1_chr9_-_123760992_123761028	0.559334	PAX4.p2	AK081259|Fyco1|17281|FYVE and coiled-coil domain containing 1	AK013060|Fyco1|17281|FYVE and coiled-coil domain containing 1	NM_001110253|Fyco1|17281|FYVE and coiled-coil domain containing 1
mm9_v1_chrX_-_7783571_7783654	0.558005	PAX4.p2	BC027292|Porcn|53627|porcupine homolog (Drosophila)	BC032284|Porcn|53627|porcupine homolog (Drosophila)	AK010405|Porcn|53627|porcupine homolog (Drosophila)	AB036746|Porcn|53627|porcupine homolog (Drosophila)	AB036747|Porcn|53627|porcupine homolog (Drosophila)	AB036748|Porcn|53627|porcupine homolog (Drosophila)	AB036749|Porcn|53627|porcupine homolog (Drosophila)	NM_016913|Porcn|53627|porcupine homolog (Drosophila)	NM_023638|Porcn|53627|porcupine homolog (Drosophila)	NM_145907|Porcn|53627|porcupine homolog (Drosophila)	NM_145908|Porcn|53627|porcupine homolog (Drosophila)
mm9_v1_chr6_+_129130632_129130672	0.553921	PAX4.p2	AY320031|Clec2d|93694|C-type lectin domain family 2, member d	AF321553|Clec2d|93694|C-type lectin domain family 2, member d	NM_053109|Clec2d|93694|C-type lectin domain family 2, member d	AF350409|Clec2d|93694|C-type lectin domain family 2, member d	BC106776|Clec2d|93694|C-type lectin domain family 2, member d
mm9_v1_chr6_-_126690651_126690691	0.551051	PAX4.p2	NM_013568|Kcna6|16494|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm9_v1_chr19_-_46413027_46413167	0.550514	PAX4.p2	AK134110|Cuedc2|67116|CUE domain containing 2	AK178562|Cuedc2|67116|CUE domain containing 2	AK186231|Cuedc2|67116|CUE domain containing 2	AK207375|Cuedc2|67116|CUE domain containing 2	AK003457|Cuedc2|67116|CUE domain containing 2	AK013884|Cuedc2|67116|CUE domain containing 2	BC003442|Cuedc2|67116|CUE domain containing 2	AK008842|Cuedc2|67116|CUE domain containing 2	NM_001164290|Cuedc2|67116|CUE domain containing 2	NM_001164291|Cuedc2|67116|CUE domain containing 2	NM_001164292|Cuedc2|67116|CUE domain containing 2	NM_001164293|Cuedc2|67116|CUE domain containing 2	NM_001164294|Cuedc2|67116|CUE domain containing 2	NM_001164295|Cuedc2|67116|CUE domain containing 2	NM_024192|Cuedc2|67116|CUE domain containing 2
mm9_v1_chr18_-_64676160_64676211	0.550345	PAX4.p2	AK083730|Nars|70223|asparaginyl-tRNA synthetase	AK157244|Nars|70223|asparaginyl-tRNA synthetase	AK172657|Nars|70223|asparaginyl-tRNA synthetase	AK077699|Nars|70223|asparaginyl-tRNA synthetase	NM_001142950|Nars|70223|asparaginyl-tRNA synthetase	NM_027350|Nars|70223|asparaginyl-tRNA synthetase
mm9_v1_chr14_-_104215770_104216122	0.547851	PAX4.p2	AK202768|Ednrb|13618|endothelin receptor type B	AK191663|Ednrb|13618|endothelin receptor type B	AK203096|Ednrb|13618|endothelin receptor type B	AK215811|Ednrb|13618|endothelin receptor type B
mm9_v1_chr10_+_127774872_127774973	0.542777	PAX4.p2	BC013554|Cs|12974|citrate synthase	BC029754|Cs|12974|citrate synthase	NM_026444|Cs|12974|citrate synthase	AB056479|Cs|12974|citrate synthase
mm9_v1_chr6_-_134742342_134742495	0.541348	PAX4.p2	AB052157|Dusp16|70686|dual specificity phosphatase 16	BC059232|Dusp16|70686|dual specificity phosphatase 16	AF345951|Dusp16|70686|dual specificity phosphatase 16	AF345952|Dusp16|70686|dual specificity phosphatase 16	AF345953|Dusp16|70686|dual specificity phosphatase 16	AF345954|Dusp16|70686|dual specificity phosphatase 16	BC057321|Dusp16|70686|dual specificity phosphatase 16
mm9_v1_chr7_-_125849230_125849252	0.538641	PAX4.p2	AF212860|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK005361|Gde1|56209|glycerophosphodiester phosphodiesterase 1	NM_019580|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr19_+_6341137_6341249	0.538323	PAX4.p2	AK154164|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	AK154323|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	BC116286|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	BC116287|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	NM_009006|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	U50595|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2
mm9_v1_chr5_-_121459315_121459358	0.53829	PAX4.p2	D29965|Rph3a|19894|rabphilin 3A	AB112924|Rph3a|19894|rabphilin 3A
mm9_v1_chr10_-_79373177_79373432	0.53774	PAX4.p2	AK206142|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK206739|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK212119|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK180841|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK179327|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK207391|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218659|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218931|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr2_+_174167172_174167173	0.535825	PAX4.p2	BC048834|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr5_+_135644171_135644241	0.535259	PAX4.p2	NM_009745|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr11_-_115474200_115474295	0.531468	PAX4.p2	BC026745|Mif4gd|69674|MIF4G domain containing	AK010175|Mif4gd|69674|MIF4G domain containing	AK150749|Mif4gd|69674|MIF4G domain containing	BC019515|Mif4gd|69674|MIF4G domain containing	BC026740|Mif4gd|69674|MIF4G domain containing
mm9_v1_chr18_-_14131046_14131241	0.528332	PAX4.p2	BC021376|Zfp521|225207|zinc finger protein 521	AK052655|Zfp521|225207|zinc finger protein 521	AY147406|Zfp521|225207|zinc finger protein 521	NM_145492|Zfp521|225207|zinc finger protein 521
mm9_v1_chr15_-_90509751_90509818	0.526425	PAX4.p2	AK005311|Cpne8|66871|copine VIII	BC076564|Cpne8|66871|copine VIII	BC017626|Cpne8|66871|copine VIII	AK013407|Cpne8|66871|copine VIII	AK004559|Cpne8|66871|copine VIII	BC138745|Cpne8|66871|copine VIII	BC138746|Cpne8|66871|copine VIII	AK010227|Cpne8|66871|copine VIII	BC048551|Cpne8|66871|copine VIII	NM_001033851|Cpne8|66871|copine VIII	NM_025815|Cpne8|66871|copine VIII
mm9_v1_chrX_-_151650871_151650951	0.525375	PAX4.p2	AK154445|Sat1|20229|spermidine/spermine N1-acetyl transferase 1	AK002531|Sat1|20229|spermidine/spermine N1-acetyl transferase 1	BC058696|Sat1|20229|spermidine/spermine N1-acetyl transferase 1	NM_009121|Sat1|20229|spermidine/spermine N1-acetyl transferase 1
mm9_v1_chr9_+_14305055_14305063	0.525036	PAX4.p2	NM_023153|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr8_-_48374755_48374779	0.52381	PAX4.p2	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr15_-_101966611_101966682	0.521935	PAX4.p2	BC048820|Spryd3|223918|SPRY domain containing 3	NM_001033277|Spryd3|223918|SPRY domain containing 3	AK146689|Spryd3|223918|SPRY domain containing 3
mm9_v1_chr2_-_152169650_152169795	0.521896	PAX4.p2	AK146421|Trib3|228775|tribbles homolog 3 (Drosophila)	AK089931|Trib3|228775|tribbles homolog 3 (Drosophila)	AK144752|Trib3|228775|tribbles homolog 3 (Drosophila)	AJ514260|Trib3|228775|tribbles homolog 3 (Drosophila)	AK146340|Trib3|228775|tribbles homolog 3 (Drosophila)	AK132257|Trib3|228775|tribbles homolog 3 (Drosophila)	AK159760|Trib3|228775|tribbles homolog 3 (Drosophila)	AF358868|Trib3|228775|tribbles homolog 3 (Drosophila)	BC012955|Trib3|228775|tribbles homolog 3 (Drosophila)	AK160099|Trib3|228775|tribbles homolog 3 (Drosophila)	NM_175093|Trib3|228775|tribbles homolog 3 (Drosophila)
mm9_v1_chr1_-_72258684_72258880	0.521381	PAX4.p2	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chr17_-_35372703_35372759	0.519371	PAX4.p2	AK133517|Nfkbil1|18038|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1	BC013269|Nfkbil1|18038|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1	AF095902|Nfkbil1|18038|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1	NM_010909|Nfkbil1|18038|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1
mm9_v1_chr5_+_77445047_77445068	0.519349	PAX4.p2	BC053422|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene	NM_027970|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene	AK006270|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene
mm9_v1_chr8_+_97197870_97198051	0.518544	PAX4.p2	AK185594|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK195499|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205549|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK207967|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK212239|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK214075|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK216087|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK218146|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK220110|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK206178|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK190102|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205025|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK005851|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr2_-_172765592_172765841	0.518469	PAX4.p2	AK020411|Bmp7|12162|bone morphogenetic protein 7	X56906|Bmp7|12162|bone morphogenetic protein 7	BC010771|Bmp7|12162|bone morphogenetic protein 7	NM_007557|Bmp7|12162|bone morphogenetic protein 7
mm9_v1_chr5_-_123183255_123183351	0.513005	PAX4.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr16_+_31428833_31428879	0.509934	PAX4.p2	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr3_-_50247306_50247534	0.509222	PAX4.p2	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr5_-_149363989_149364264	0.507798	PAX4.p2	BC025595|Ubl3|24109|ubiquitin-like 3	AK145952|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr18_+_37179802_37179999	0.503697	PAX4.p2	AY013759|Pcdha12|192164|protocadherin alpha 12	NM_138663|Pcdha12|192164|protocadherin alpha 12	AB008180|Pcdha12|192164|protocadherin alpha 12
mm9_v1_chr10_+_80720251_80720289	0.503525	PAX4.p2	AK079816|Matk|17179|megakaryocyte-associated tyrosine kinase	U05210|Matk|17179|megakaryocyte-associated tyrosine kinase	L27738|Matk|17179|megakaryocyte-associated tyrosine kinase	NM_010768|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr11_+_95896221_95896236	0.501492	PAX4.p2	AK013058|Snf8|27681|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	NM_033568|Snf8|27681|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
mm9_v1_chr1_-_165242552_165242739	0.501115	PAX4.p2	AK165914|Prrx1|18933|paired related homeobox 1	AK019503|Prrx1|18933|paired related homeobox 1
mm9_v1_chr18_+_57628139_57628180	0.500367	PAX4.p2	NM_001134697|Ctxn3|629147|cortexin 3	AK042789|Ctxn3|629147|cortexin 3
mm9_v1_chr2_-_154429368_154429412	0.500224	PAX4.p2	BC025796|Pxmp4|59038|peroxisomal membrane protein 4	AJ271476|Pxmp4|59038|peroxisomal membrane protein 4	AK143785|Pxmp4|59038|peroxisomal membrane protein 4	AK156743|Pxmp4|59038|peroxisomal membrane protein 4	AK050647|Pxmp4|59038|peroxisomal membrane protein 4	NM_021534|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr19_+_55816299_55816310	0.499428	PAX4.p2	NM_001142918|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142919|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142920|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142921|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142922|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142923|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_009333|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	BC011397|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chr1_-_66909822_66909954	0.496342	PAX4.p2	U21489|Acadl|11363|acyl-Coenzyme A dehydrogenase, long-chain	BC027412|Acadl|11363|acyl-Coenzyme A dehydrogenase, long-chain	AK005140|Acadl|11363|acyl-Coenzyme A dehydrogenase, long-chain	NM_007381|Acadl|11363|acyl-Coenzyme A dehydrogenase, long-chain	AK151845|Acadl|11363|acyl-Coenzyme A dehydrogenase, long-chain	AK167537|Acadl|11363|acyl-Coenzyme A dehydrogenase, long-chain
mm9_v1_chr8_+_23587151_23587348	0.49423	PAX4.p2	NM_011394|Slc20a2|20516|solute carrier family 20, member 2	AK170985|Slc20a2|20516|solute carrier family 20, member 2	BC046510|Slc20a2|20516|solute carrier family 20, member 2	AK157206|Slc20a2|20516|solute carrier family 20, member 2	AK087507|Slc20a2|20516|solute carrier family 20, member 2
mm9_v1_chr11_+_86298106_86298244	0.493484	PAX4.p2	AK036401|Rnft1|76892|ring finger protein, transmembrane 1	NM_029788|Rnft1|76892|ring finger protein, transmembrane 1	AK171077|Rnft1|76892|ring finger protein, transmembrane 1	AK153293|Rnft1|76892|ring finger protein, transmembrane 1	BC050796|Rnft1|76892|ring finger protein, transmembrane 1	AK002624|Rnft1|76892|ring finger protein, transmembrane 1
mm9_v1_chr9_+_62189138_62189256	0.493274	PAX4.p2	NM_009672|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	AK020753|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	BC062899|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	AF022957|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm9_v1_chr10_+_99478457_99478639	0.492949	PAX4.p2	AK018777|Kitl|17311|kit ligand	NM_013598|Kitl|17311|kit ligand	U44725|Kitl|17311|kit ligand	AK134301|Kitl|17311|kit ligand	AK041961|Kitl|17311|kit ligand	AK165233|Kitl|17311|kit ligand	BC011322|Kitl|17311|kit ligand	M57647|Kitl|17311|kit ligand	S40364|Kitl|17311|kit ligand	S40534|Kitl|17311|kit ligand	S40536|Kitl|17311|kit ligand	M64262|Kitl|17311|kit ligand	X95379|Kitl|17311|kit ligand	X95380|Kitl|17311|kit ligand	X95381|Kitl|17311|kit ligand	X99322|Kitl|17311|kit ligand	Y10287|Kitl|17311|kit ligand	M59915|Kitl|17311|kit ligand
mm9_v1_chr10_+_59740430_59740512	0.490652	PAX4.p2	AK159108|Psap|19156|prosaposin	AK148152|Psap|19156|prosaposin	S71616|Psap|19156|prosaposin	AK161313|Psap|19156|prosaposin	AK159457|Psap|19156|prosaposin	AK152819|Psap|19156|prosaposin	AK217017|Psap|19156|prosaposin	AK148150|Psap|19156|prosaposin	AK152319|Psap|19156|prosaposin	AK159221|Psap|19156|prosaposin	AK152408|Psap|19156|prosaposin	AK167198|Psap|19156|prosaposin	AK145607|Psap|19156|prosaposin	AK148545|Psap|19156|prosaposin	AK150331|Psap|19156|prosaposin	AK151234|Psap|19156|prosaposin	AK151525|Psap|19156|prosaposin	AK151529|Psap|19156|prosaposin	AK151852|Psap|19156|prosaposin	AK151907|Psap|19156|prosaposin	AK151943|Psap|19156|prosaposin	AK152134|Psap|19156|prosaposin	AK152505|Psap|19156|prosaposin	AK152557|Psap|19156|prosaposin	AK152605|Psap|19156|prosaposin	AK159414|Psap|19156|prosaposin	AK159589|Psap|19156|prosaposin	AK159728|Psap|19156|prosaposin	AK159862|Psap|19156|prosaposin	AK159936|Psap|19156|prosaposin	AK160019|Psap|19156|prosaposin	AK160049|Psap|19156|prosaposin	AK160877|Psap|19156|prosaposin	AK166879|Psap|19156|prosaposin	AK167099|Psap|19156|prosaposin	AK167252|Psap|19156|prosaposin	AK093881|Psap|19156|prosaposin	AK152355|Psap|19156|prosaposin	AK159333|Psap|19156|prosaposin	AK167418|Psap|19156|prosaposin	AK088369|Psap|19156|prosaposin	AK135637|Psap|19156|prosaposin	AK145802|Psap|19156|prosaposin	AK150645|Psap|19156|prosaposin	AK151034|Psap|19156|prosaposin	AK151230|Psap|19156|prosaposin	AK151251|Psap|19156|prosaposin	AK151875|Psap|19156|prosaposin	AK151891|Psap|19156|prosaposin	AK152126|Psap|19156|prosaposin	AK152280|Psap|19156|prosaposin	AK153404|Psap|19156|prosaposin	AK159164|Psap|19156|prosaposin	AK159167|Psap|19156|prosaposin	AK159198|Psap|19156|prosaposin	AK159244|Psap|19156|prosaposin	AK159266|Psap|19156|prosaposin	AK159341|Psap|19156|prosaposin	AK159384|Psap|19156|prosaposin	AK159451|Psap|19156|prosaposin	AK159487|Psap|19156|prosaposin	AK159492|Psap|19156|prosaposin	AK159510|Psap|19156|prosaposin	AK159528|Psap|19156|prosaposin	AK159530|Psap|19156|prosaposin	AK159604|Psap|19156|prosaposin	AK159634|Psap|19156|prosaposin	AK159638|Psap|19156|prosaposin	AK159657|Psap|19156|prosaposin	AK159664|Psap|19156|prosaposin	AK159685|Psap|19156|prosaposin	AK159692|Psap|19156|prosaposin	AK159709|Psap|19156|prosaposin	AK159720|Psap|19156|prosaposin	AK159840|Psap|19156|prosaposin	AK159861|Psap|19156|prosaposin	AK159877|Psap|19156|prosaposin	AK159910|Psap|19156|prosaposin	AK159915|Psap|19156|prosaposin	AK159982|Psap|19156|prosaposin	AK160015|Psap|19156|prosaposin	AK160021|Psap|19156|prosaposin	AK160024|Psap|19156|prosaposin	AK160046|Psap|19156|prosaposin	AK160073|Psap|19156|prosaposin	AK160108|Psap|19156|prosaposin	AK166700|Psap|19156|prosaposin	AK166707|Psap|19156|prosaposin	AK166811|Psap|19156|prosaposin	AK166849|Psap|19156|prosaposin	AK166909|Psap|19156|prosaposin	AK166920|Psap|19156|prosaposin	AK166946|Psap|19156|prosaposin	AK166959|Psap|19156|prosaposin	AK166984|Psap|19156|prosaposin	AK167014|Psap|19156|prosaposin	AK167025|Psap|19156|prosaposin	AK167073|Psap|19156|prosaposin	AK167108|Psap|19156|prosaposin	AK167111|Psap|19156|prosaposin	AK167147|Psap|19156|prosaposin	AK167213|Psap|19156|prosaposin	AK167237|Psap|19156|prosaposin	BC141089|Psap|19156|prosaposin	BC145359|Psap|19156|prosaposin	U27340|Psap|19156|prosaposin	AK089998|Psap|19156|prosaposin	AK151173|Psap|19156|prosaposin	AK152117|Psap|19156|prosaposin	AK159427|Psap|19156|prosaposin	AK159463|Psap|19156|prosaposin	AK159994|Psap|19156|prosaposin	AK166744|Psap|19156|prosaposin	AK167243|Psap|19156|prosaposin	AK167719|Psap|19156|prosaposin	AK170416|Psap|19156|prosaposin	AK159722|Psap|19156|prosaposin	S36200|Psap|19156|prosaposin
mm9_v1_chr8_+_98057984_98058038	0.490592	PAX4.p2	AK077130|Ccdc113|244608|coiled-coil domain containing 113	NM_172914|Ccdc113|244608|coiled-coil domain containing 113	BC060957|Ccdc113|244608|coiled-coil domain containing 113	BC048506|Ccdc113|244608|coiled-coil domain containing 113
mm9_v1_chr16_+_31428882_31428885	0.489813	PAX4.p2	AK009575|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr8_+_67471046_67471202	0.488089	PAX4.p2	AK013998|Tmem192|73067|transmembrane protein 192	NM_001163747|Tmem192|73067|transmembrane protein 192	NM_028427|Tmem192|73067|transmembrane protein 192	AK168146|Tmem192|73067|transmembrane protein 192	AK046181|Tmem192|73067|transmembrane protein 192	AK132619|Tmem192|73067|transmembrane protein 192	BC020157|Tmem192|73067|transmembrane protein 192
mm9_v1_chr6_-_124861656_124861722	0.486725	PAX4.p2	BC120591|Lag3|16768|lymphocyte-activation gene 3	NM_008479|Lag3|16768|lymphocyte-activation gene 3	X98113|Lag3|16768|lymphocyte-activation gene 3
mm9_v1_chr3_-_73512328_73512336	0.483765	PAX4.p2	AK050337|Bche|12038|butyrylcholinesterase	NM_009738|Bche|12038|butyrylcholinesterase
mm9_v1_chr11_+_87394543_87394570	0.483163	PAX4.p2	AK135143|Sept4|18952|septin 4	BC055101|Sept4|18952|septin 4	BC037673|Sept4|18952|septin 4
mm9_v1_chr3_-_36589048_36589088	0.475426	PAX4.p2	AK082063|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK080619|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK032317|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	NM_019510|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3
mm9_v1_chr14_-_73785035_73785066	0.472483	PAX4.p2	AK002599|Itm2b|16432|integral membrane protein 2B	AK153103|Itm2b|16432|integral membrane protein 2B	AK159307|Itm2b|16432|integral membrane protein 2B	AK003224|Itm2b|16432|integral membrane protein 2B	BC004731|Itm2b|16432|integral membrane protein 2B	AK003587|Itm2b|16432|integral membrane protein 2B	AK003928|Itm2b|16432|integral membrane protein 2B	AK088270|Itm2b|16432|integral membrane protein 2B	AK159340|Itm2b|16432|integral membrane protein 2B	AK159426|Itm2b|16432|integral membrane protein 2B	AK159628|Itm2b|16432|integral membrane protein 2B	AK159792|Itm2b|16432|integral membrane protein 2B	AK160101|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr5_+_64203602_64203733	0.470433	PAX4.p2	AK050792|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	AK002869|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	NM_029554|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr19_+_41904459_41904605	0.470055	PAX4.p2	NM_008043|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	AK015680|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	BC140987|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	U58974|Frat1|14296|frequently rearranged in advanced T-cell lymphomas
mm9_v1_chr2_+_177876858_177876930	0.468835	PAX4.p2	BC059869|Phactr3|74189|phosphatase and actin regulator 3	AK032242|Phactr3|74189|phosphatase and actin regulator 3	AY501387|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr10_+_115580947_115580958	0.464647	PAX4.p2	Z30313|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr2_+_83564607_83564841	0.460236	PAX4.p2	AK140647|Itgav|16410|integrin alpha V	AK080357|Itgav|16410|integrin alpha V	AK020674|Itgav|16410|integrin alpha V	AK149984|Itgav|16410|integrin alpha V	U14135|Itgav|16410|integrin alpha V	BC021600|Itgav|16410|integrin alpha V	BC133682|Itgav|16410|integrin alpha V
mm9_v1_chr7_-_125848966_125849043	0.460087	PAX4.p2	
mm9_v1_chr15_+_82000246_82000509	0.458533	PAX4.p2	BC023333|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr8_-_46418352_46418573	0.454986	PAX4.p2	BC138967|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	BC138968|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AB056457|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AK165754|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AK004724|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	AK150653|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3	NM_133969|Cyp4v3|102294|cytochrome P450, family 4, subfamily v, polypeptide 3
mm9_v1_chr2_+_18598882_18599030	0.450419	PAX4.p2	BC053708|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr5_+_65361309_65361366	0.450019	PAX4.p2	AM162548|Fam114a1|68303|family with sequence similarity 114, member A1	BC110359|Fam114a1|68303|family with sequence similarity 114, member A1	AK030360|Fam114a1|68303|family with sequence similarity 114, member A1	NM_026667|Fam114a1|68303|family with sequence similarity 114, member A1	AK014725|Fam114a1|68303|family with sequence similarity 114, member A1	BC027235|Fam114a1|68303|family with sequence similarity 114, member A1	AK020262|Fam114a1|68303|family with sequence similarity 114, member A1	AK007950|Fam114a1|68303|family with sequence similarity 114, member A1	AK017336|Fam114a1|68303|family with sequence similarity 114, member A1	BC089499|Fam114a1|68303|family with sequence similarity 114, member A1
mm9_v1_chr4_+_102242664_102242699	0.448863	PAX4.p2	NM_001177980|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC023751|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr11_+_22872016_22872058	0.445752	PAX4.p2	NM_011663|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	D17407|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	S69507|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
mm9_v1_chr18_+_66033139_66033147	0.445664	PAX4.p2	AK139345|Grp|225642|gastrin releasing peptide	AK133508|Grp|225642|gastrin releasing peptide	BC024515|Grp|225642|gastrin releasing peptide	NM_175012|Grp|225642|gastrin releasing peptide
mm9_v1_chr1_-_173177242_173177242	0.445179	PAX4.p2	AK078474|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2	NM_153064|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr15_+_82105322_82105458	0.441955	PAX4.p2	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr4_+_126290825_126290854	0.440327	PAX4.p2	
mm9_v1_chr8_-_3154851_3154868	0.43908	PAX4.p2	AK085344|Insr|16337|insulin receptor
mm9_v1_chr17_+_35958628_35958663	0.439012	PAX4.p2	AK051003|Ier3|15937|immediate early response 3	AK170477|Ier3|15937|immediate early response 3	AK003466|Ier3|15937|immediate early response 3	BC006950|Ier3|15937|immediate early response 3	NM_133662|Ier3|15937|immediate early response 3	CT010247|Ier3|15937|immediate early response 3	CT010271|Ier3|15937|immediate early response 3
mm9_v1_chr16_+_45158927_45158941	0.437055	PAX4.p2	AK005266|Atg3|67841|autophagy-related 3 (yeast)	AK011409|Atg3|67841|autophagy-related 3 (yeast)	AK150914|Atg3|67841|autophagy-related 3 (yeast)	AK159231|Atg3|67841|autophagy-related 3 (yeast)	NM_026402|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr5_+_148768875_148768913	0.436567	PAX4.p2	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr8_-_86217895_86217983	0.428768	PAX4.p2	AK150062|Pkn1|320795|protein kinase N1	AK149649|Pkn1|320795|protein kinase N1	AK089431|Pkn1|320795|protein kinase N1	AK171297|Pkn1|320795|protein kinase N1
mm9_v1_chr11_-_116515232_116515303	0.42789	PAX4.p2	AJ315163|Cygb|114886|cytoglobin
mm9_v1_chr11_-_51419012_51419040	0.425992	PAX4.p2	AK207379|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr12_+_114424066_114424140	0.425824	PAX4.p2	NM_153776|Tmem121|69195|transmembrane protein 121	AK010454|Tmem121|69195|transmembrane protein 121	AF488729|Tmem121|69195|transmembrane protein 121
mm9_v1_chr5_+_114580397_114580568	0.423892	PAX4.p2	BC011039|Ung|22256|uracil DNA glycosylase	NM_001040691|Ung|22256|uracil DNA glycosylase	Y08975|Ung|22256|uracil DNA glycosylase	AK146178|Ung|22256|uracil DNA glycosylase
mm9_v1_chr2_+_181414995_181415018	0.423146	PAX4.p2	D86081|Tcea2|21400|transcription elongation factor A (SII), 2	NM_009326|Tcea2|21400|transcription elongation factor A (SII), 2	AK131650|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr9_-_108551631_108551731	0.422904	PAX4.p2	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chrX_+_65931715_65931923	0.422745	PAX4.p2	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr10_+_79630579_79630595	0.420584	PAX4.p2	AK014655|Cirbp|12696|cold inducible RNA binding protein	AK132584|Cirbp|12696|cold inducible RNA binding protein	D78135|Cirbp|12696|cold inducible RNA binding protein	NM_007705|Cirbp|12696|cold inducible RNA binding protein	BC075699|Cirbp|12696|cold inducible RNA binding protein
mm9_v1_chr6_+_113588460_113588613	0.419699	PAX4.p2	NM_001113553|Irak2|108960|interleukin-1 receptor-associated kinase 2	NM_172161|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK148248|Irak2|108960|interleukin-1 receptor-associated kinase 2	AY162378|Irak2|108960|interleukin-1 receptor-associated kinase 2	AY162379|Irak2|108960|interleukin-1 receptor-associated kinase 2	AY162381|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK033707|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK028733|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK078062|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK150056|Irak2|108960|interleukin-1 receptor-associated kinase 2	BC085324|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK151428|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK152682|Irak2|108960|interleukin-1 receptor-associated kinase 2	AJ440756|Irak2|108960|interleukin-1 receptor-associated kinase 2	AK154715|Irak2|108960|interleukin-1 receptor-associated kinase 2
mm9_v1_chr16_-_75909440_75909580	0.419218	PAX4.p2	AK041340|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	AF222928|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	AK041566|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	AK053946|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	BC052906|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	BC064778|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	DQ333189|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1	NM_023380|Samsn1|67742|SAM domain, SH3 domain and nuclear localization signals, 1
mm9_v1_chr19_+_29038321_29038434	0.41908	PAX4.p2	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr7_+_29551728_29551875	0.417206	PAX4.p2	NM_001122765|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	NM_001122766|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	NM_022432|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	AF299337|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	AK146412|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	AK014042|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	AK193014|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	AB221570|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)	AK144431|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)
mm9_v1_chr8_+_48072271_48072307	0.413461	PAX4.p2	AK046881|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK046797|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	NM_177304|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079642|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079352|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK038460|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	BC096376|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm9_v1_chr15_-_36700634_36700638	0.409453	PAX4.p2	AK003664|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr6_+_86145477_86145494	0.408437	PAX4.p2	AK162680|Tgfa|21802|transforming growth factor alpha	M92420|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr17_-_43013469_43013643	0.408061	PAX4.p2	AK046750|Cd2ap|12488|CD2-associated protein
mm9_v1_chr2_+_34262301_34262360	0.408053	PAX4.p2	AK132263|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr18_+_37120093_37120209	0.407049	PAX4.p2	AY013763|Pcdha5|12941|protocadherin alpha 5	NM_009959|Pcdha5|12941|protocadherin alpha 5	AB008181|Pcdha5|12941|protocadherin alpha 5
mm9_v1_chr4_-_41071227_41071277	0.402722	PAX4.p2	AK195706|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK197974|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK198310|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK199838|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK202668|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK204352|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK209500|Nol6|230082|nucleolar protein family 6 (RNA-associated)
mm9_v1_chr2_-_93662687_93662734	0.402202	PAX4.p2	BC006597|Ext2|14043|exostoses (multiple) 2	U67837|Ext2|14043|exostoses (multiple) 2	U72141|Ext2|14043|exostoses (multiple) 2	AK152265|Ext2|14043|exostoses (multiple) 2	AK152840|Ext2|14043|exostoses (multiple) 2	AK082572|Ext2|14043|exostoses (multiple) 2	AK084772|Ext2|14043|exostoses (multiple) 2	AK164342|Ext2|14043|exostoses (multiple) 2	AK148090|Ext2|14043|exostoses (multiple) 2	AK150155|Ext2|14043|exostoses (multiple) 2	NM_010163|Ext2|14043|exostoses (multiple) 2
mm9_v1_chr4_+_44045506_44045645	0.39925	PAX4.p2	
mm9_v1_chr10_+_59740373_59740429	0.395456	PAX4.p2	NM_001146120|Psap|19156|prosaposin	NM_001146121|Psap|19156|prosaposin	NM_001146122|Psap|19156|prosaposin	NM_001146123|Psap|19156|prosaposin	NM_011179|Psap|19156|prosaposin	AK167902|Psap|19156|prosaposin	AK151686|Psap|19156|prosaposin	AK152203|Psap|19156|prosaposin
mm9_v1_chr6_-_35258102_35258131	0.392882	PAX4.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr11_+_33947115_33947287	0.390393	PAX4.p2	AK036727|Lcp2|16822|lymphocyte cytosolic protein 2	AK037970|Lcp2|16822|lymphocyte cytosolic protein 2	U20159|Lcp2|16822|lymphocyte cytosolic protein 2	AK168134|Lcp2|16822|lymphocyte cytosolic protein 2	AK153374|Lcp2|16822|lymphocyte cytosolic protein 2	BC006948|Lcp2|16822|lymphocyte cytosolic protein 2	NM_010696|Lcp2|16822|lymphocyte cytosolic protein 2
mm9_v1_chr5_-_123183537_123183571	0.389902	PAX4.p2	AK213252|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr2_+_131735663_131735721	0.389008	PAX4.p2	NM_011170|Prnp|19122|prion protein	AK148061|Prnp|19122|prion protein	AK158908|Prnp|19122|prion protein	AK159056|Prnp|19122|prion protein	AK162504|Prnp|19122|prion protein	AK148892|Prnp|19122|prion protein	AK157840|Prnp|19122|prion protein	AK150963|Prnp|19122|prion protein	AK159224|Prnp|19122|prion protein	AK160091|Prnp|19122|prion protein
mm9_v1_chr9_+_82723410_82723412	0.388149	PAX4.p2	AK020170|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	NM_001168240|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	NM_022986|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr2_-_65076584_65076777	0.386694	PAX4.p2	AK052533|Cobll1|319876|Cobl-like 1	AK144943|Cobll1|319876|Cobl-like 1	AY308746|Cobll1|319876|Cobl-like 1	BC067007|Cobll1|319876|Cobl-like 1	NM_027225|Cobll1|319876|Cobl-like 1	NM_177025|Cobll1|319876|Cobl-like 1	AK037010|Cobll1|319876|Cobl-like 1
mm9_v1_chr17_-_68353397_68353499	0.385824	PAX4.p2	AK141901|Arhgap28|268970|Rho GTPase activating protein 28	BC066788|Arhgap28|268970|Rho GTPase activating protein 28	NM_172964|Arhgap28|268970|Rho GTPase activating protein 28	AK087523|Arhgap28|268970|Rho GTPase activating protein 28
mm9_v1_chr2_-_65076471_65076554	0.385763	PAX4.p2	AK173076|Cobll1|319876|Cobl-like 1
mm9_v1_chr6_+_48597232_48597434	0.385492	PAX4.p2	AK134199|Gimap8|243374|GTPase, IMAP family member 8	NM_001077410|Gimap8|243374|GTPase, IMAP family member 8	AB178029|Gimap8|243374|GTPase, IMAP family member 8	AK155985|Gimap8|243374|GTPase, IMAP family member 8	NM_212486|Gimap8|243374|GTPase, IMAP family member 8	BC137943|Gimap8|243374|GTPase, IMAP family member 8	BC137944|Gimap8|243374|GTPase, IMAP family member 8	AJ617674|Gimap8|243374|GTPase, IMAP family member 8
mm9_v1_chr6_+_128942978_128943066	0.384351	PAX4.p2	BC051485|BC064078|408064|cDNA sequence BC064078	BC016205|BC064078|408064|cDNA sequence BC064078	BC017132|BC064078|408064|cDNA sequence BC064078	BC025095|BC064078|408064|cDNA sequence BC064078	BC038635|BC064078|408064|cDNA sequence BC064078	BC096405|BC064078|408064|cDNA sequence BC064078	BC064078|BC064078|408064|cDNA sequence BC064078	AK134020|BC064078|408064|cDNA sequence BC064078
mm9_v1_chr6_-_124915545_124915560	0.384317	PAX4.p2	NM_001164089|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr2_+_151931424_151931452	0.384084	PAX4.p2	AK161066|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	BC011325|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)
mm9_v1_chr19_+_10278684_10278739	0.383921	PAX4.p2	NM_026919|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK145833|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK007351|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	BC085316|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene
mm9_v1_chr7_-_52622167_52622179	0.381168	PAX4.p2	AB516303|Ppfia3|76787|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
mm9_v1_chr3_+_51028368_51028391	0.380932	PAX4.p2	AK087790|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	NM_009834|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AF183960|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AK149340|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chr7_+_5035137_5035428	0.380789	PAX4.p2	BC046962|Epn1|13854|epsin 1
mm9_v1_chr17_-_47824991_47825049	0.372568	PAX4.p2	AK003291|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	AK019199|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	BC037589|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	AK010470|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)
mm9_v1_chr18_-_15471207_15471211	0.37144	PAX4.p2	AK088053|E430002N23Rik|319440|RIKEN cDNA E430002N23 gene
mm9_v1_chr1_+_182260606_182260741	0.370301	PAX4.p2	NM_001081175|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	AK046612|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	AK053759|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	BC151160|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	BC157986|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	BC158000|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B
mm9_v1_chr11_+_109301411_109301484	0.367314	PAX4.p2	AK085963|Amz2|13929|archaelysin family metallopeptidase 2
mm9_v1_chr17_+_41071633_41071710	0.36538	PAX4.p2	NM_008650|Mut|17850|methylmalonyl-Coenzyme A mutase	BC019175|Mut|17850|methylmalonyl-Coenzyme A mutase	AK146309|Mut|17850|methylmalonyl-Coenzyme A mutase
mm9_v1_chr2_-_52532100_52532129	0.363323	PAX4.p2	AK147338|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_001037099|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr10_-_60736018_60736185	0.363056	PAX4.p2	BC158014|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	BC157953|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	BC172106|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	AK145103|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	NM_001081127|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14
mm9_v1_chr9_+_44142772_44142803	0.360656	PAX4.p2	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chr10_-_86164623_86164759	0.358691	PAX4.p2	AK031918|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160827|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215377|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215142|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210698|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210697|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK205935|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK216702|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK218021|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK186620|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chr5_+_31350991_31351042	0.357465	PAX4.p2	NM_027855|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK151307|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK151366|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	BC049637|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AB009018|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK002276|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK169267|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	BC057097|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene
mm9_v1_chr19_-_11410534_11410635	0.354479	PAX4.p2	AK085297|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	BC019784|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	BC024402|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	AF237917|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	NM_027836|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	AK149890|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	AK018686|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	AK151261|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	AK152098|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	NM_001025610|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7	AK046559|Ms4a7|109225|membrane-spanning 4-domains, subfamily A, member 7
mm9_v1_chr11_-_17111513_17111579	0.353804	PAX4.p2	AK165942|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK007324|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009146|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009896|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK017153|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	BC020037|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AF349950|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr5_+_30969259_30969346	0.353434	PAX4.p2	AF012709|Cenpa|12615|centromere protein A	NM_007681|Cenpa|12615|centromere protein A	AK040313|Cenpa|12615|centromere protein A	AK041138|Cenpa|12615|centromere protein A	AK089033|Cenpa|12615|centromere protein A	AK053763|Cenpa|12615|centromere protein A	AK010718|Cenpa|12615|centromere protein A	BC011038|Cenpa|12615|centromere protein A	AK011399|Cenpa|12615|centromere protein A	BC012280|Cenpa|12615|centromere protein A
mm9_v1_chr8_-_74150754_74150876	0.352419	PAX4.p2	AK141620|Unc13a|382018|unc-13 homolog A (C. elegans)	AK048697|Unc13a|382018|unc-13 homolog A (C. elegans)	AK039579|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr4_-_41587115_41587160	0.352197	PAX4.p2	AK050496|Enho|69638|energy homeostasis associated
mm9_v1_chr17_+_70871393_70871416	0.351942	PAX4.p2	AK036307|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr16_+_94664089_94664229	0.351921	PAX4.p2	AK164492|Ttc3|22129|tetratricopeptide repeat domain 3
mm9_v1_chr17_-_10512094_10512209	0.351916	PAX4.p2	BC053426|Qk|19317|quaking
mm9_v1_chr5_-_138125909_138125964	0.351883	PAX4.p2	BC003330|Agfg2|231801|ArfGAP with FG repeats 2	NM_145566|Agfg2|231801|ArfGAP with FG repeats 2	AK171048|Agfg2|231801|ArfGAP with FG repeats 2
mm9_v1_chrX_+_10294707_10294726	0.351546	PAX4.p2	AK131619|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK014143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr14_-_56519012_56519108	0.349327	PAX4.p2	AK009339|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	BC087941|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	AK049709|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	NM_001082975|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1
mm9_v1_chr2_-_101469101_101469106	0.348093	PAX4.p2	AK010820|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene
mm9_v1_chr2_+_17976897_17976897	0.347986	PAX4.p2	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chrX_-_73120485_73120524	0.347754	PAX4.p2	AK165540|Pls3|102866|plastin 3 (T-isoform)	NM_001166453|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr10_-_31329530_31329530	0.346144	PAX4.p2	NM_001146349|Rnf217|268291|ring finger protein 217
mm9_v1_chrM_+_7714_7790	0.343977	PAX4.p2	AF093677|ATP6|17705|ATP synthase F0 subunit 6	BC069931|Gm10925|100191075|predicted gene 10925
mm9_v1_chr13_+_64263131_64263227	0.34324	PAX4.p2	AK016800|Habp4|56541|hyaluronic acid binding protein 4	BC082806|Habp4|56541|hyaluronic acid binding protein 4	NM_019986|Habp4|56541|hyaluronic acid binding protein 4	AK144206|Habp4|56541|hyaluronic acid binding protein 4	AK146525|Habp4|56541|hyaluronic acid binding protein 4	AF227684|Habp4|56541|hyaluronic acid binding protein 4
mm9_v1_chr11_-_102178559_102178600	0.341953	PAX4.p2	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr7_-_125849167_125849210	0.339881	PAX4.p2	AK186739|Gde1|56209|glycerophosphodiester phosphodiesterase 1	BC003902|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr17_+_21672490_21672637	0.33963	PAX4.p2	AK032299|Zfp52|22710|zinc finger protein 52	NM_144515|Zfp52|22710|zinc finger protein 52	BC021527|Zfp52|22710|zinc finger protein 52
mm9_v1_chr11_-_29415005_29415037	0.339223	PAX4.p2	BC033930|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK085965|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK019442|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK077280|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK008574|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	BC115900|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	NM_001163454|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	NM_026465|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1
mm9_v1_chr9_-_53418394_53418489	0.338543	PAX4.p2	AK146241|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK032097|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK075593|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024763|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024429|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AJ510150|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK169771|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK081715|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	NM_144784|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK163402|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1
mm9_v1_chr7_+_25689409_25689425	0.337669	PAX4.p2	BC012488|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr2_+_91570249_91570297	0.337603	PAX4.p2	NM_001080754|Ambra1|228361|autophagy/beclin 1 regulator 1	NM_172669|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr4_+_102243272_102243317	0.336994	PAX4.p2	AK011999|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC007155|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr3_+_95985065_95985205	0.336956	PAX4.p2	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr5_+_32780438_32780530	0.334544	PAX4.p2	AK198041|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK202060|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK217081|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK214320|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr5_-_148706377_148706412	0.333387	PAX4.p2	AK156898|Slc46a3|71706|solute carrier family 46, member 3	NM_027872|Slc46a3|71706|solute carrier family 46, member 3	BC006902|Slc46a3|71706|solute carrier family 46, member 3	AK004609|Slc46a3|71706|solute carrier family 46, member 3
mm9_v1_chr13_-_29043539_29043562	0.333192	PAX4.p2	AK031394|Sox4|20677|SRY-box containing gene 4	AK153771|Sox4|20677|SRY-box containing gene 4
mm9_v1_chr1_-_180264067_180264092	0.33307	PAX4.p2	AK190289|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr15_-_50721552_50721725	0.330107	PAX4.p2	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr9_-_108499855_108499944	0.329774	PAX4.p2	AK016685|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK161992|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK038927|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK047714|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	BC111871|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	NM_028944|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	AK046783|P4htm|74443|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
mm9_v1_chr9_-_64585429_64585448	0.328581	PAX4.p2	AB232605|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr16_-_19983049_19983121	0.328535	PAX4.p2	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr11_+_109334649_109334687	0.327382	PAX4.p2	AK158726|Arsg|74008|arylsulfatase G	NM_028710|Arsg|74008|arylsulfatase G
mm9_v1_chr4_-_40186722_40186871	0.327247	PAX4.p2	BC127163|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC152540|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AY553221|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK052871|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC106095|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK078287|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK155930|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK128929|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC027369|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK087261|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	NM_172689|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
mm9_v1_chr2_-_91805686_91805756	0.327135	PAX4.p2	AK170936|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr5_+_150921233_150921280	0.325628	PAX4.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr2_-_168567602_168567660	0.325571	PAX4.p2	AK082271|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr19_-_6015125_6015246	0.325001	PAX4.p2	AF021847|Capn1|12333|calpain 1	BC026138|Capn1|12333|calpain 1	BC050276|Capn1|12333|calpain 1	AK088547|Capn1|12333|calpain 1	AK149706|Capn1|12333|calpain 1	AK150084|Capn1|12333|calpain 1	AK168063|Capn1|12333|calpain 1	AK160940|Capn1|12333|calpain 1	AK165258|Capn1|12333|calpain 1	NM_007600|Capn1|12333|calpain 1
mm9_v1_chr4_-_138281116_138281156	0.324165	PAX4.p2	AK045964|Ubxn10|212190|UBX domain protein 10	AK161296|Ubxn10|212190|UBX domain protein 10	AK080662|Ubxn10|212190|UBX domain protein 10
mm9_v1_chr5_-_141178143_141178224	0.323879	PAX4.p2	AK006472|Iqce|74239|IQ motif containing E	BC065128|Iqce|74239|IQ motif containing E
mm9_v1_chr11_-_106243873_106243954	0.323741	PAX4.p2	AK007801|Icam2|15896|intercellular adhesion molecule 2	BC039128|Icam2|15896|intercellular adhesion molecule 2	BC039970|Icam2|15896|intercellular adhesion molecule 2	NM_010494|Icam2|15896|intercellular adhesion molecule 2	X65493|Icam2|15896|intercellular adhesion molecule 2
mm9_v1_chr16_-_56886260_56886287	0.323216	PAX4.p2	AK049837|Tmem45a|56277|transmembrane protein 45a	NM_019631|Tmem45a|56277|transmembrane protein 45a	AK081478|Tmem45a|56277|transmembrane protein 45a	BC064715|Tmem45a|56277|transmembrane protein 45a
mm9_v1_chr12_-_8505780_8505995	0.320074	PAX4.p2	AK215498|Rhob|11852|ras homolog gene family, member B	AK148834|Rhob|11852|ras homolog gene family, member B	AK184048|Rhob|11852|ras homolog gene family, member B	AK013784|Rhob|11852|ras homolog gene family, member B
mm9_v1_chr19_-_8787313_8787393	0.317365	PAX4.p2	AK183775|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK180963|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
mm9_v1_chr10_-_129717244_129717295	0.31592	PAX4.p2	BC042639|Neurod4|11923|neurogenic differentiation 4	AK012183|Neurod4|11923|neurogenic differentiation 4	BC054391|Neurod4|11923|neurogenic differentiation 4	NM_007501|Neurod4|11923|neurogenic differentiation 4
mm9_v1_chr4_-_149148173_149148404	0.315349	PAX4.p2	AK017628|Slc25a33|70556|solute carrier family 25, member 33	BC011293|Slc25a33|70556|solute carrier family 25, member 33	AK157423|Slc25a33|70556|solute carrier family 25, member 33	NM_027460|Slc25a33|70556|solute carrier family 25, member 33
mm9_v1_chr1_-_173080710_173080755	0.314671	PAX4.p2	BC083091|Sdhc|66052|succinate dehydrogenase complex, subunit C, integral membrane protein	BC005779|Sdhc|66052|succinate dehydrogenase complex, subunit C, integral membrane protein	AK002459|Sdhc|66052|succinate dehydrogenase complex, subunit C, integral membrane protein	AK135503|Sdhc|66052|succinate dehydrogenase complex, subunit C, integral membrane protein	AK012818|Sdhc|66052|succinate dehydrogenase complex, subunit C, integral membrane protein	AK032458|Sdhc|66052|succinate dehydrogenase complex, subunit C, integral membrane protein	NM_025321|Sdhc|66052|succinate dehydrogenase complex, subunit C, integral membrane protein
mm9_v1_chr11_+_95353403_95353542	0.31411	PAX4.p2	
mm9_v1_chr1_-_133964541_133964638	0.313663	PAX4.p2	AK162495|Mfsd4|213006|major facilitator superfamily domain containing 4	AK048692|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_001114662|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_172510|Mfsd4|213006|major facilitator superfamily domain containing 4
mm9_v1_chr17_+_29175540_29175570	0.313545	PAX4.p2	AK182771|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr16_+_32419787_32419893	0.311663	PAX4.p2	BC059716|Tctex1d2|66061|Tctex1 domain containing 2	NM_025329|Tctex1d2|66061|Tctex1 domain containing 2	AK007178|Tctex1d2|66061|Tctex1 domain containing 2	AK002589|Tctex1d2|66061|Tctex1 domain containing 2	AK010027|Tctex1d2|66061|Tctex1 domain containing 2	AK010464|Tctex1d2|66061|Tctex1 domain containing 2	AK004191|Tctex1d2|66061|Tctex1 domain containing 2	BC053332|Tctex1d2|66061|Tctex1 domain containing 2
mm9_v1_chr9_-_14304843_14304925	0.309893	PAX4.p2	AK155227|Kdm4d|244694|lysine (K)-specific demethylase 4D	AK030020|Kdm4d|244694|lysine (K)-specific demethylase 4D	NM_173433|Kdm4d|244694|lysine (K)-specific demethylase 4D
mm9_v1_chr19_-_5800268_5800325	0.308993	PAX4.p2	
mm9_v1_chrX_+_54306724_54306791	0.305782	PAX4.p2	AK012522|Htatsf1|72459|HIV TAT specific factor 1	BC037711|Htatsf1|72459|HIV TAT specific factor 1	NM_028242|Htatsf1|72459|HIV TAT specific factor 1
mm9_v1_chrX_-_103123825_103123915	0.305408	PAX4.p2	AK172134|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr2_+_181415111_181415136	0.303437	PAX4.p2	AB221557|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr15_+_76734729_76734768	0.303271	PAX4.p2	BC043017|Rpl8|26961|ribosomal protein L8
mm9_v1_chr11_-_100632238_100632274	0.297884	PAX4.p2	AK143922|Ghdc|80860|GH3 domain containing	BC005639|Ghdc|80860|GH3 domain containing	AK135322|Ghdc|80860|GH3 domain containing	AF316996|Ghdc|80860|GH3 domain containing	NM_031871|Ghdc|80860|GH3 domain containing
mm9_v1_chr14_-_21437545_21437583	0.296249	PAX4.p2	AK047620|Usp54|78787|ubiquitin specific peptidase 54	NM_030180|Usp54|78787|ubiquitin specific peptidase 54
mm9_v1_chr16_-_14291427_14291500	0.296016	PAX4.p2	S81516|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	L25860|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137226|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85923|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85924|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137716|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK085742|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK173045|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_001161775|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_013607|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle
mm9_v1_chr14_-_73785068_73785151	0.295924	PAX4.p2	NM_008410|Itm2b|16432|integral membrane protein 2B	U76253|Itm2b|16432|integral membrane protein 2B	AK077482|Itm2b|16432|integral membrane protein 2B	BC010320|Itm2b|16432|integral membrane protein 2B	AK076139|Itm2b|16432|integral membrane protein 2B	AK152068|Itm2b|16432|integral membrane protein 2B	BC021786|Itm2b|16432|integral membrane protein 2B	AK152983|Itm2b|16432|integral membrane protein 2B	AK159619|Itm2b|16432|integral membrane protein 2B	AB030203|Itm2b|16432|integral membrane protein 2B	AK150378|Itm2b|16432|integral membrane protein 2B	AK150396|Itm2b|16432|integral membrane protein 2B	AK151714|Itm2b|16432|integral membrane protein 2B	AK151889|Itm2b|16432|integral membrane protein 2B	AK152516|Itm2b|16432|integral membrane protein 2B	AK152650|Itm2b|16432|integral membrane protein 2B	AK159378|Itm2b|16432|integral membrane protein 2B	AK160725|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr16_-_36874886_36874911	0.295344	PAX4.p2	BC056626|Eaf2|106389|ELL associated factor 2	NM_134111|Eaf2|106389|ELL associated factor 2
mm9_v1_chr17_+_53706283_53706299	0.295093	PAX4.p2	AK156290|Kat2b|18519|K(lysine) acetyltransferase 2B	NM_020005|Kat2b|18519|K(lysine) acetyltransferase 2B
mm9_v1_chr2_-_132078887_132078932	0.294226	PAX4.p2	BC010343|Pcna|18538|proliferating cell nuclear antigen	BC005778|Pcna|18538|proliferating cell nuclear antigen	AK012614|Pcna|18538|proliferating cell nuclear antigen	AK012730|Pcna|18538|proliferating cell nuclear antigen	AK012932|Pcna|18538|proliferating cell nuclear antigen	AK088256|Pcna|18538|proliferating cell nuclear antigen	AK151238|Pcna|18538|proliferating cell nuclear antigen	AK165217|Pcna|18538|proliferating cell nuclear antigen	AK168233|Pcna|18538|proliferating cell nuclear antigen	NM_011045|Pcna|18538|proliferating cell nuclear antigen	X53068|Pcna|18538|proliferating cell nuclear antigen	AK168596|Pcna|18538|proliferating cell nuclear antigen
mm9_v1_chr11_-_17111582_17111598	0.29378	PAX4.p2	AK146152|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK168177|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	NM_025443|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr11_-_96805092_96805165	0.291916	PAX4.p2	AK154443|Pnpo|103711|pyridoxine 5'-phosphate oxidase
mm9_v1_chr5_+_38651466_38651637	0.290412	PAX4.p2	BC025197|Tmem128|66309|transmembrane protein 128	AK012789|Tmem128|66309|transmembrane protein 128	AK013227|Tmem128|66309|transmembrane protein 128	AK080853|Tmem128|66309|transmembrane protein 128	NM_025480|Tmem128|66309|transmembrane protein 128	AK162257|Tmem128|66309|transmembrane protein 128	AK076679|Tmem128|66309|transmembrane protein 128	BC060969|Tmem128|66309|transmembrane protein 128	BC110310|Tmem128|66309|transmembrane protein 128
mm9_v1_chr3_+_27883092_27883235	0.290205	PAX4.p2	NM_008875|Pld1|18805|phospholipase D1	BC068144|Pld1|18805|phospholipase D1
mm9_v1_chr2_-_125331769_125331823	0.28852	PAX4.p2	AK046621|Fbn1|14118|fibrillin 1
mm9_v1_chr4_+_41709182_41709267	0.287557	PAX4.p2	NM_010549|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	X74953|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	BC057664|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	AK143811|Il11ra1|16157|interleukin 11 receptor, alpha chain 1
mm9_v1_chr15_+_4003731_4003740	0.287523	PAX4.p2	AK181182|Oxct1|67041|3-oxoacid CoA transferase 1	AK181314|Oxct1|67041|3-oxoacid CoA transferase 1	AK184597|Oxct1|67041|3-oxoacid CoA transferase 1	AK185295|Oxct1|67041|3-oxoacid CoA transferase 1
mm9_v1_chr5_+_120120870_120121055	0.287503	PAX4.p2	BC096551|Tbx3|21386|T-box 3	AK052453|Tbx3|21386|T-box 3
mm9_v1_chr4_+_147534776_147534786	0.287482	PAX4.p2	BC046586|Fbxo2|230904|F-box protein 2	NM_176848|Fbxo2|230904|F-box protein 2
mm9_v1_chr11_-_86497242_86497360	0.287455	PAX4.p2	AX775963|Tmem49|75909|transmembrane protein 49	AK019443|Tmem49|75909|transmembrane protein 49	AK049559|Tmem49|75909|transmembrane protein 49	BC004013|Tmem49|75909|transmembrane protein 49	AK077443|Tmem49|75909|transmembrane protein 49	AK043091|Tmem49|75909|transmembrane protein 49	NM_029478|Tmem49|75909|transmembrane protein 49	AB047550|Tmem49|75909|transmembrane protein 49	AK167173|Tmem49|75909|transmembrane protein 49	AK167202|Tmem49|75909|transmembrane protein 49	AK016312|Tmem49|75909|transmembrane protein 49	AK159468|Tmem49|75909|transmembrane protein 49
mm9_v1_chr6_-_113481340_113481484	0.287282	PAX4.p2	AK206599|Tmem111|66087|transmembrane protein 111	AK213319|Tmem111|66087|transmembrane protein 111	AK218418|Tmem111|66087|transmembrane protein 111	AK167819|Tmem111|66087|transmembrane protein 111
mm9_v1_chr19_-_10175990_10176185	0.286256	PAX4.p2	AF126798|Fads2|56473|fatty acid desaturase 2	NM_019699|Fads2|56473|fatty acid desaturase 2	AK143524|Fads2|56473|fatty acid desaturase 2	AK032633|Fads2|56473|fatty acid desaturase 2	AK083282|Fads2|56473|fatty acid desaturase 2	AK031337|Fads2|56473|fatty acid desaturase 2
mm9_v1_chr5_-_22252628_22252724	0.285041	PAX4.p2	BC030424|A930003O13Rik|330052|RIKEN cDNA A930003O13 gene	AK044256|A930003O13Rik|330052|RIKEN cDNA A930003O13 gene
mm9_v1_chr17_-_34253887_34254086	0.282744	PAX4.p2	AK179882|Brd2|14312|bromodomain containing 2	AK205877|Brd2|14312|bromodomain containing 2	AK218127|Brd2|14312|bromodomain containing 2	AB212273|Brd2|14312|bromodomain containing 2	AB010248|Brd2|14312|bromodomain containing 2
mm9_v1_chr15_+_99548011_99548018	0.282071	PAX4.p2	AK018733|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	AK137134|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)
mm9_v1_chr13_-_58228398_58228433	0.280903	PAX4.p2	AK172180|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr7_-_16807341_16807387	0.278927	PAX4.p2	BC080856|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK129062|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK004733|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	NM_027883|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34
mm9_v1_chr6_+_29685467_29685542	0.277929	PAX4.p2	NM_176996|Smo|319757|smoothened homolog (Drosophila)	AK053699|Smo|319757|smoothened homolog (Drosophila)	AK053708|Smo|319757|smoothened homolog (Drosophila)
mm9_v1_chr9_+_77961211_77961215	0.276915	PAX4.p2	AF225918|Ick|56542|intestinal cell kinase
mm9_v1_chr3_+_95303177_95303218	0.275784	PAX4.p2	BC046320|Ctsk|13038|cathepsin K	AK132648|Ctsk|13038|cathepsin K	AK003425|Ctsk|13038|cathepsin K	NM_007802|Ctsk|13038|cathepsin K
mm9_v1_chr19_+_47929516_47929546	0.275685	PAX4.p2	AK146834|Gsto1|14873|glutathione S-transferase omega 1	AK168383|Gsto1|14873|glutathione S-transferase omega 1	AK027922|Gsto1|14873|glutathione S-transferase omega 1	BC085165|Gsto1|14873|glutathione S-transferase omega 1	AK204961|Gsto1|14873|glutathione S-transferase omega 1
mm9_v1_chr15_+_73582208_73582380	0.274344	PAX4.p2	BC027445|Ptp4a3|19245|protein tyrosine phosphatase 4a3	CT010215|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK003954|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr9_-_119977358_119977413	0.273461	PAX4.p2	BC012653|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK035902|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK140010|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AF102269|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	NM_009987|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK045634|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK137388|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK044557|Cx3cr1|13051|chemokine (C-X3-C) receptor 1
mm9_v1_chr8_+_69221320_69221371	0.273138	PAX4.p2	AK132397|Npy1r|18166|neuropeptide Y receptor Y1	NM_010934|Npy1r|18166|neuropeptide Y receptor Y1	D63819|Npy1r|18166|neuropeptide Y receptor Y1
mm9_v1_chr6_-_43616140_43616276	0.271472	PAX4.p2	BC023354|Tpk1|29807|thiamine pyrophosphokinase	AK052225|Tpk1|29807|thiamine pyrophosphokinase	AB027568|Tpk1|29807|thiamine pyrophosphokinase	AK035044|Tpk1|29807|thiamine pyrophosphokinase	AK136486|Tpk1|29807|thiamine pyrophosphokinase	NM_013861|Tpk1|29807|thiamine pyrophosphokinase	AK034521|Tpk1|29807|thiamine pyrophosphokinase	BC015246|Tpk1|29807|thiamine pyrophosphokinase	AK028431|Tpk1|29807|thiamine pyrophosphokinase	AK039131|Tpk1|29807|thiamine pyrophosphokinase	AK087844|Tpk1|29807|thiamine pyrophosphokinase
mm9_v1_chr7_+_150255257_150255421	0.271377	PAX4.p2	AB041597|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AB038011|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279796|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279797|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_001115085|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_020285|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_138631|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AK088052|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4
mm9_v1_chr5_-_42235518_42235530	0.270896	PAX4.p2	AK046296|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK053690|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK134590|Bod1l|665775|biorientation of chromosomes in cell division 1-like
mm9_v1_chrX_-_159081510_159081550	0.270342	PAX4.p2	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr7_-_148067703_148067786	0.269794	PAX4.p2	BC025878|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AK075861|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	FJ621493|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	EU886466|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AF299339|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001127351|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001177804|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)
mm9_v1_chr4_-_116312481_116312553	0.269737	PAX4.p2	AK181349|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr4_-_34725566_34725655	0.269251	PAX4.p2	BC027508|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene	AK007303|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene	AK005941|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene	NM_025471|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene	AK007660|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene	AK013007|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene	AK079613|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene	AK021236|1810030N24Rik|66291|RIKEN cDNA 1810030N24 gene
mm9_v1_chr11_-_120012603_120012679	0.267688	PAX4.p2	AK159948|Slc38a10|72055|solute carrier family 38, member 10	AK165672|Slc38a10|72055|solute carrier family 38, member 10	BC082300|Slc38a10|72055|solute carrier family 38, member 10	AK090050|Slc38a10|72055|solute carrier family 38, member 10	NM_001164798|Slc38a10|72055|solute carrier family 38, member 10	NM_001164799|Slc38a10|72055|solute carrier family 38, member 10	NM_001164800|Slc38a10|72055|solute carrier family 38, member 10	NM_001164801|Slc38a10|72055|solute carrier family 38, member 10	NM_001164802|Slc38a10|72055|solute carrier family 38, member 10	NM_024249|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr2_+_129418930_129419057	0.267579	PAX4.p2	NM_001177647|Sirpa|19261|signal-regulatory protein alpha	NM_007547|Sirpa|19261|signal-regulatory protein alpha	D87967|Sirpa|19261|signal-regulatory protein alpha	D87968|Sirpa|19261|signal-regulatory protein alpha	D85785|Sirpa|19261|signal-regulatory protein alpha
mm9_v1_chr19_-_3414456_3414471	0.266548	PAX4.p2	BC044055|Gal|14419|galanin	NM_010253|Gal|14419|galanin	AK133522|Gal|14419|galanin
mm9_v1_chr5_-_42235532_42235553	0.26465	PAX4.p2	AK079548|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK077824|Bod1l|665775|biorientation of chromosomes in cell division 1-like	NM_001081422|Bod1l|665775|biorientation of chromosomes in cell division 1-like
mm9_v1_chr4_+_128964854_128964874	0.264093	PAX4.p2	AK081983|Sync|68828|syncoilin	NM_023485|Sync|68828|syncoilin	AK160756|Sync|68828|syncoilin
mm9_v1_chr2_+_19293231_19293294	0.264086	PAX4.p2	BC021619|Msrb2|76467|methionine sulfoxide reductase B2	NM_029619|Msrb2|76467|methionine sulfoxide reductase B2	AK009912|Msrb2|76467|methionine sulfoxide reductase B2
mm9_v1_chr2_-_163470841_163470868	0.263363	PAX4.p2	BC029026|Serinc3|26943|serine incorporator 3	BC029980|Serinc3|26943|serine incorporator 3	AK031101|Serinc3|26943|serine incorporator 3
mm9_v1_chr13_+_55828701_55828778	0.26292	PAX4.p2	NM_028281|Pcbd2|72562|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	AK012465|Pcbd2|72562|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	BC028642|Pcbd2|72562|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
mm9_v1_chr4_-_100854453_100854462	0.257877	PAX4.p2	AK181063|Jak1|16451|Janus kinase 1
mm9_v1_chrX_-_159081452_159081495	0.257597	PAX4.p2	BC139012|Reps2|194590|RALBP1 associated Eps domain containing protein 2	BC145500|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr6_+_134879109_134879150	0.257447	PAX4.p2	AK004447|1190002F15Rik|381822|RIKEN cDNA 1190002F15 gene
mm9_v1_chr1_-_166237573_166237642	0.256611	PAX4.p2	AK029787|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160208|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160209|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_025505|Blzf1|66352|basic leucine zipper nuclear factor 1	AK006544|Blzf1|66352|basic leucine zipper nuclear factor 1	AK167493|Blzf1|66352|basic leucine zipper nuclear factor 1
mm9_v1_chr17_-_35325354_35325410	0.255161	PAX4.p2	U72643|Lst1|16988|leukocyte specific transcript 1	U72644|Lst1|16988|leukocyte specific transcript 1	AF000428|Lst1|16988|leukocyte specific transcript 1	BC086881|Lst1|16988|leukocyte specific transcript 1	M18187|Lst1|16988|leukocyte specific transcript 1	NM_010734|Lst1|16988|leukocyte specific transcript 1	AF000427|Lst1|16988|leukocyte specific transcript 1
mm9_v1_chr16_-_91931806_91931895	0.255151	PAX4.p2	AK169318|Atp5o|28080|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	BC012241|Atp5o|28080|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	AK168292|Atp5o|28080|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	AK005309|Atp5o|28080|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	NM_138597|Atp5o|28080|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
mm9_v1_chr3_+_14863507_14863565	0.252804	PAX4.p2	AK003671|Car3|12350|carbonic anhydrase 3	AK075630|Car3|12350|carbonic anhydrase 3	AK002349|Car3|12350|carbonic anhydrase 3	AK017227|Car3|12350|carbonic anhydrase 3	BC011129|Car3|12350|carbonic anhydrase 3	NM_007606|Car3|12350|carbonic anhydrase 3
mm9_v1_chr15_-_99650502_99650572	0.252489	PAX4.p2	AF307844|Lima1|65970|LIM domain and actin binding 1	AK028186|Lima1|65970|LIM domain and actin binding 1	AK031698|Lima1|65970|LIM domain and actin binding 1	AK132314|Lima1|65970|LIM domain and actin binding 1	AK085065|Lima1|65970|LIM domain and actin binding 1	NM_023063|Lima1|65970|LIM domain and actin binding 1
mm9_v1_chr8_+_119983566_119983649	0.252354	PAX4.p2	AK049761|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr16_+_91373008_91373145	0.252301	PAX4.p2	NM_001110498|Ifnar2|15976|interferon (alpha and beta) receptor 2	NM_010509|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK139169|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK010952|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK003185|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150386|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK152878|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK153317|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151474|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151777|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151493|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150597|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09864|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09865|Ifnar2|15976|interferon (alpha and beta) receptor 2
mm9_v1_chr11_+_87394609_87394632	0.251811	PAX4.p2	NM_011129|Sept4|18952|septin 4	X61452|Sept4|18952|septin 4
mm9_v1_chr8_+_125927553_125927654	0.25176	PAX4.p2	AK212341|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr1_+_187028043_187028086	0.250907	PAX4.p2	NM_001163754|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2	AK157509|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2
mm9_v1_chr3_+_127492716_127493047	0.250891	PAX4.p2	AK166239|Tifa|211550|TRAF-interacting protein with forkhead-associated domain	NM_145133|Tifa|211550|TRAF-interacting protein with forkhead-associated domain	AK044221|Tifa|211550|TRAF-interacting protein with forkhead-associated domain	BC065775|Tifa|211550|TRAF-interacting protein with forkhead-associated domain	AK149864|Tifa|211550|TRAF-interacting protein with forkhead-associated domain	AK151651|Tifa|211550|TRAF-interacting protein with forkhead-associated domain	AB062111|Tifa|211550|TRAF-interacting protein with forkhead-associated domain
mm9_v1_chr9_-_71619329_71619430	0.2489	PAX4.p2	AK040774|Cgnl1|68178|cingulin-like 1	AB186125|Cgnl1|68178|cingulin-like 1	AK081179|Cgnl1|68178|cingulin-like 1	AK036871|Cgnl1|68178|cingulin-like 1	NM_026599|Cgnl1|68178|cingulin-like 1
mm9_v1_chr1_-_36756687_36756877	0.248859	PAX4.p2	AK010077|Actr1b|226977|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
mm9_v1_chr1_-_55283618_55283625	0.248789	PAX4.p2	AK012229|Rftn2|74013|raftlin family member 2	AK031158|Rftn2|74013|raftlin family member 2	BC038341|Rftn2|74013|raftlin family member 2	NM_028713|Rftn2|74013|raftlin family member 2
mm9_v1_chr4_-_151822815_151822985	0.247128	PAX4.p2	AK152613|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	L48983|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	AK157053|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr14_+_56109905_56110009	0.246987	PAX4.p2	AK148355|Lrrc16b|268747|leucine rich repeat containing 16B	NM_001024645|Lrrc16b|268747|leucine rich repeat containing 16B	BC092223|Lrrc16b|268747|leucine rich repeat containing 16B	BC082805|Lrrc16b|268747|leucine rich repeat containing 16B
mm9_v1_chr11_-_5661971_5662117	0.245486	PAX4.p2	AK191392|Urgcp|72046|upregulator of cell proliferation	AK129378|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr4_+_61947463_61947577	0.243385	PAX4.p2	NM_025286|Slc31a2|20530|solute carrier family 31, member 2	AK008473|Slc31a2|20530|solute carrier family 31, member 2	BC099447|Slc31a2|20530|solute carrier family 31, member 2	AK007579|Slc31a2|20530|solute carrier family 31, member 2	AK152812|Slc31a2|20530|solute carrier family 31, member 2	AK003269|Slc31a2|20530|solute carrier family 31, member 2	AK151612|Slc31a2|20530|solute carrier family 31, member 2	BC029183|Slc31a2|20530|solute carrier family 31, member 2
mm9_v1_chr13_-_105844882_105845009	0.242673	PAX4.p2	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr11_-_109856977_109857129	0.241043	PAX4.p2	BC089557|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	AK173034|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	BC141401|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	AF498362|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	AK138196|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b	NM_013851|Abca8b|27404|ATP-binding cassette, sub-family A (ABC1), member 8b
mm9_v1_chr11_+_60644132_60644227	0.240829	PAX4.p2	NM_001172112|Dhrs7b|216820|dehydrogenase/reductase (SDR family) member 7B	NM_145428|Dhrs7b|216820|dehydrogenase/reductase (SDR family) member 7B	AK052209|Dhrs7b|216820|dehydrogenase/reductase (SDR family) member 7B	AK139084|Dhrs7b|216820|dehydrogenase/reductase (SDR family) member 7B	BC003479|Dhrs7b|216820|dehydrogenase/reductase (SDR family) member 7B	AK144057|Dhrs7b|216820|dehydrogenase/reductase (SDR family) member 7B
mm9_v1_chr18_-_39649499_39649545	0.239754	PAX4.p2	AK156323|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr1_-_79758277_79758343	0.239658	PAX4.p2	AK220391|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK157204|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK005937|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK159710|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK165554|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK007215|Wdfy1|69368|WD repeat and FYVE domain containing 1	NM_001111279|Wdfy1|69368|WD repeat and FYVE domain containing 1	NM_027057|Wdfy1|69368|WD repeat and FYVE domain containing 1
mm9_v1_chr9_+_44143931_44144022	0.23873	PAX4.p2	
mm9_v1_chr4_-_63707849_63707898	0.238715	PAX4.p2	D90343|Tnc|21923|tenascin C
mm9_v1_chr13_-_107726930_107727002	0.238275	PAX4.p2	BC031900|Ipo11|76582|importin 11	BC029746|Ipo11|76582|importin 11	NM_029665|Ipo11|76582|importin 11
mm9_v1_chr15_-_79845406_79845411	0.237147	PAX4.p2	AK087840|Pdgfb|18591|platelet derived growth factor, B polypeptide
mm9_v1_chrX_-_34625145_34625200	0.236977	PAX4.p2	AK150955|Rpl39|67248|ribosomal protein L39	BC094645|Rpl39|67248|ribosomal protein L39	BC039092|Rpl39|67248|ribosomal protein L39	BC139247|Rpl39|67248|ribosomal protein L39	BC139249|Rpl39|67248|ribosomal protein L39	AK002591|Rpl39|67248|ribosomal protein L39	AK008853|Rpl39|67248|ribosomal protein L39	AK168773|Rpl39|67248|ribosomal protein L39	AK028139|Rpl39|67248|ribosomal protein L39	AK005511|Rpl39|67248|ribosomal protein L39	AK088761|Rpl39|67248|ribosomal protein L39	NM_026055|Rpl39|67248|ribosomal protein L39	AK007821|Rpl39|67248|ribosomal protein L39	AK013381|Rpl39|67248|ribosomal protein L39	AK146772|Rpl39|67248|ribosomal protein L39
mm9_v1_chr2_+_164328123_164328160	0.236879	PAX4.p2	AK177432|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr15_-_43002356_43002397	0.236513	PAX4.p2	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr3_-_59147980_59148315	0.236112	PAX4.p2	AK132367|Igsf10|242050|immunoglobulin superfamily, member 10	NM_001162884|Igsf10|242050|immunoglobulin superfamily, member 10	AK143421|Igsf10|242050|immunoglobulin superfamily, member 10
mm9_v1_chr16_-_38712939_38713011	0.235994	PAX4.p2	BC138870|Arhgap31|12549|Rho GTPase activating protein 31	AK170685|Arhgap31|12549|Rho GTPase activating protein 31	AK155729|Arhgap31|12549|Rho GTPase activating protein 31	AK149975|Arhgap31|12549|Rho GTPase activating protein 31	AK150109|Arhgap31|12549|Rho GTPase activating protein 31	AK045213|Arhgap31|12549|Rho GTPase activating protein 31	AK018057|Arhgap31|12549|Rho GTPase activating protein 31
mm9_v1_chr11_+_84632348_84632371	0.233437	PAX4.p2	
mm9_v1_chr9_+_82723787_82723813	0.233203	PAX4.p2	AJ242722|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr19_+_60832080_60832311	0.233112	PAX4.p2	AK139148|Nanos1|332397|nanos homolog 1 (Drosophila)	BC056473|Nanos1|332397|nanos homolog 1 (Drosophila)	AK046189|Nanos1|332397|nanos homolog 1 (Drosophila)	AB095029|Nanos1|332397|nanos homolog 1 (Drosophila)
mm9_v1_chr9_-_112137467_112137521	0.232386	PAX4.p2	AK153892|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr7_-_125849255_125849313	0.230956	PAX4.p2	AK004583|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK150807|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr13_-_114408704_114408818	0.229006	PAX4.p2	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr19_-_32462926_32462979	0.228609	PAX4.p2	AK151170|Sgms1|208449|sphingomyelin synthase 1	AK153406|Sgms1|208449|sphingomyelin synthase 1	AK146782|Sgms1|208449|sphingomyelin synthase 1	AY509044|Sgms1|208449|sphingomyelin synthase 1	NM_144792|Sgms1|208449|sphingomyelin synthase 1
mm9_v1_chr11_+_118338269_118338301	0.228356	PAX4.p2	AK048667|Engase|217364|endo-beta-N-acetylglucosaminidase	BC120923|Engase|217364|endo-beta-N-acetylglucosaminidase	BC120924|Engase|217364|endo-beta-N-acetylglucosaminidase	NM_172573|Engase|217364|endo-beta-N-acetylglucosaminidase	AK084254|Engase|217364|endo-beta-N-acetylglucosaminidase	BC060640|Engase|217364|endo-beta-N-acetylglucosaminidase	AK167142|Engase|217364|endo-beta-N-acetylglucosaminidase
mm9_v1_chr4_+_149461473_149461659	0.228021	PAX4.p2	AK089429|Gpr157|269604|G protein-coupled receptor 157	NM_177366|Gpr157|269604|G protein-coupled receptor 157	BC117996|Gpr157|269604|G protein-coupled receptor 157	AK089544|Gpr157|269604|G protein-coupled receptor 157
mm9_v1_chr1_+_17717497_17717562	0.226966	PAX4.p2	AK133870|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK137611|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	NM_031402|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AF329198|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK134273|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1
mm9_v1_chr17_+_71553920_71554003	0.22414	PAX4.p2	AK165218|Lpin2|64898|lipin 2	AK050018|Lpin2|64898|lipin 2	NM_001164885|Lpin2|64898|lipin 2
mm9_v1_chr5_-_149363603_149363821	0.224046	PAX4.p2	AF044223|Ubl3|24109|ubiquitin-like 3	AK134598|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr3_+_136460712_136460798	0.223803	PAX4.p2	AK209023|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr14_-_41827037_41827078	0.223012	PAX4.p2	BC056635|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	AK017688|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	NM_027464|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	AK156326|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene
mm9_v1_chr1_+_89991575_89991689	0.222768	PAX4.p2	NM_201642|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK159496|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK128918|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK162317|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK165465|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK154973|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	BC141205|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	BC141206|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AY227199|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK144599|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C	AK153157|Ugt1a7c|394432|UDP glucuronosyltransferase 1 family, polypeptide A7C
mm9_v1_chr17_-_46841851_46841924	0.222677	PAX4.p2	BC010716|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AY338234|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AK160587|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AB053464|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr11_-_16908631_16908720	0.222511	PAX4.p2	AK151460|Plek|56193|pleckstrin	AK152501|Plek|56193|pleckstrin	AK153109|Plek|56193|pleckstrin	BC066185|Plek|56193|pleckstrin	AF303745|Plek|56193|pleckstrin	AK033872|Plek|56193|pleckstrin	AK138831|Plek|56193|pleckstrin	AK050340|Plek|56193|pleckstrin	AK075810|Plek|56193|pleckstrin	AF181829|Plek|56193|pleckstrin	AF073294|Plek|56193|pleckstrin	AK156235|Plek|56193|pleckstrin	NM_019549|Plek|56193|pleckstrin
mm9_v1_chr6_-_108135548_108135588	0.222486	PAX4.p2	BC026981|Sumf1|58911|sulfatase modifying factor 1	AK160917|Sumf1|58911|sulfatase modifying factor 1	AK159192|Sumf1|58911|sulfatase modifying factor 1	AK161203|Sumf1|58911|sulfatase modifying factor 1	AK151874|Sumf1|58911|sulfatase modifying factor 1	NM_145937|Sumf1|58911|sulfatase modifying factor 1
mm9_v1_chr3_-_95686120_95686174	0.221406	PAX4.p2	AK156084|Gm129|229599|predicted gene 129	AK164001|Gm129|229599|predicted gene 129	NM_001033302|Gm129|229599|predicted gene 129
mm9_v1_chr2_-_156218547_156218745	0.221197	PAX4.p2	AK013851|2900097C17Rik|347740|RIKEN cDNA 2900097C17 gene	AK136079|2900097C17Rik|347740|RIKEN cDNA 2900097C17 gene	AK077867|2900097C17Rik|347740|RIKEN cDNA 2900097C17 gene
mm9_v1_chr13_-_91881231_91881476	0.219593	PAX4.p2	AK135005|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK162854|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK161222|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK162063|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK048302|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene
mm9_v1_chrX_-_20194672_20194682	0.219347	PAX4.p2	BC027265|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr19_-_23522811_23522929	0.219057	PAX4.p2	AK035566|Mamdc2|71738|MAM domain containing 2	NM_174857|Mamdc2|71738|MAM domain containing 2	BC042773|Mamdc2|71738|MAM domain containing 2	AK154219|Mamdc2|71738|MAM domain containing 2	AK004794|Mamdc2|71738|MAM domain containing 2
mm9_v1_chr11_-_6420931_6420971	0.217308	PAX4.p2	AK146251|Myo1g|246177|myosin IG	AK171505|Myo1g|246177|myosin IG	AK159700|Myo1g|246177|myosin IG	AK036461|Myo1g|246177|myosin IG	AK171284|Myo1g|246177|myosin IG	AK152797|Myo1g|246177|myosin IG	AK169450|Myo1g|246177|myosin IG	AK030825|Myo1g|246177|myosin IG	AK088011|Myo1g|246177|myosin IG	NM_178440|Myo1g|246177|myosin IG
mm9_v1_chrX_+_70437517_70437560	0.217188	PAX4.p2	NM_001081643|Xlr3b|574437|X-linked lymphocyte-regulated 3B	BC057003|Xlr3b|574437|X-linked lymphocyte-regulated 3B	AK146398|Xlr3b|574437|X-linked lymphocyte-regulated 3B	BC038862|Xlr3b|574437|X-linked lymphocyte-regulated 3B	BC064787|Xlr3b|574437|X-linked lymphocyte-regulated 3B
mm9_v1_chr2_-_92274110_92274239	0.21716	PAX4.p2	AB003433|Cry2|12953|cryptochrome 2 (photolyase-like)	AK172994|Cry2|12953|cryptochrome 2 (photolyase-like)	BC054794|Cry2|12953|cryptochrome 2 (photolyase-like)	BC066799|Cry2|12953|cryptochrome 2 (photolyase-like)	AK037778|Cry2|12953|cryptochrome 2 (photolyase-like)	AK041696|Cry2|12953|cryptochrome 2 (photolyase-like)	AF156987|Cry2|12953|cryptochrome 2 (photolyase-like)	AK133781|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_001113333|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_009963|Cry2|12953|cryptochrome 2 (photolyase-like)	AK051524|Cry2|12953|cryptochrome 2 (photolyase-like)
mm9_v1_chr8_-_112089492_112089538	0.217008	PAX4.p2	BC046557|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	NM_178380|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	AK017828|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	AK153917|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38
mm9_v1_chr2_+_83564553_83564598	0.216718	PAX4.p2	NM_008402|Itgav|16410|integrin alpha V
mm9_v1_chr3_+_52845429_52845504	0.216467	PAX4.p2	BC052079|Lhfp|108927|lipoma HMGIC fusion partner	NM_175386|Lhfp|108927|lipoma HMGIC fusion partner	AK159549|Lhfp|108927|lipoma HMGIC fusion partner	AK159126|Lhfp|108927|lipoma HMGIC fusion partner	AK171791|Lhfp|108927|lipoma HMGIC fusion partner	AK172390|Lhfp|108927|lipoma HMGIC fusion partner	AK172532|Lhfp|108927|lipoma HMGIC fusion partner	BC095934|Lhfp|108927|lipoma HMGIC fusion partner
mm9_v1_chr19_-_24299389_24299452	0.215559	PAX4.p2	AK028494|Tjp2|21873|tight junction protein 2
mm9_v1_chr12_-_81744771_81744855	0.214847	PAX4.p2	BC107315|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC107316|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132421|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132423|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U66870|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC099476|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U01140|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC083141|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK171834|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK010451|Erh|13877|enhancer of rudimentary homolog (Drosophila)	D73368|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK168188|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK080617|Erh|13877|enhancer of rudimentary homolog (Drosophila)	NM_007951|Erh|13877|enhancer of rudimentary homolog (Drosophila)
mm9_v1_chr18_+_36953553_36953593	0.214455	PAX4.p2	BC024881|Zmat2|66492|zinc finger, matrin type 2	NM_025594|Zmat2|66492|zinc finger, matrin type 2	AK012091|Zmat2|66492|zinc finger, matrin type 2	BC089501|Zmat2|66492|zinc finger, matrin type 2	AK008717|Zmat2|66492|zinc finger, matrin type 2
mm9_v1_chr9_+_14080805_14080923	0.213063	PAX4.p2	AK017464|Sesn3|75747|sestrin 3	BC132086|Sesn3|75747|sestrin 3	BC138690|Sesn3|75747|sestrin 3
mm9_v1_chr18_+_37644674_37644812	0.212906	PAX4.p2	BC017149|Pcdhb17|93888|protocadherin beta 17	NM_053142|Pcdhb17|93888|protocadherin beta 17	AK077255|Pcdhb17|93888|protocadherin beta 17	AF326310|Pcdhb17|93888|protocadherin beta 17	AY013778|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chr2_+_157104738_157104878	0.2119	PAX4.p2	AK018761|Rpn2|20014|ribophorin II	BC046806|Rpn2|20014|ribophorin II	AK004968|Rpn2|20014|ribophorin II	NM_019642|Rpn2|20014|ribophorin II
mm9_v1_chr11_+_59015985_59016052	0.211722	PAX4.p2	AK012143|Mrpl55|67212|mitochondrial ribosomal protein L55	AK012885|Mrpl55|67212|mitochondrial ribosomal protein L55	NM_026035|Mrpl55|67212|mitochondrial ribosomal protein L55	BC028538|Mrpl55|67212|mitochondrial ribosomal protein L55
mm9_v1_chr3_+_95733480_95733504	0.210457	PAX4.p2	AB037685|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr5_-_130363202_130363339	0.210293	PAX4.p2	AK088374|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	NM_024166|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2
mm9_v1_chr19_+_22522646_22522721	0.21014	PAX4.p2	AK044454|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_177341|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	BC141400|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	BC141412|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr5_-_77380189_77380218	0.209924	PAX4.p2	BC006053|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK148034|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK164506|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	BC023841|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr10_-_83989221_83989289	0.209759	PAX4.p2	AK205593|Ckap4|216197|cytoskeleton-associated protein 4	AK212843|Ckap4|216197|cytoskeleton-associated protein 4	AK217343|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr11_-_120012520_120012596	0.208802	PAX4.p2	AK007977|Slc38a10|72055|solute carrier family 38, member 10	AK084120|Slc38a10|72055|solute carrier family 38, member 10	AK032245|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr11_+_96902859_96902922	0.20841	PAX4.p2	AK002865|Mrpl10|107732|mitochondrial ribosomal protein L10	NM_026154|Mrpl10|107732|mitochondrial ribosomal protein L10	AK078499|Mrpl10|107732|mitochondrial ribosomal protein L10	AK171028|Mrpl10|107732|mitochondrial ribosomal protein L10	AK007643|Mrpl10|107732|mitochondrial ribosomal protein L10	AK078463|Mrpl10|107732|mitochondrial ribosomal protein L10	AK150774|Mrpl10|107732|mitochondrial ribosomal protein L10	BC016219|Mrpl10|107732|mitochondrial ribosomal protein L10	AK141835|Mrpl10|107732|mitochondrial ribosomal protein L10
mm9_v1_chr15_+_76734500_76734541	0.208081	PAX4.p2	NM_012053|Rpl8|26961|ribosomal protein L8	AK152063|Rpl8|26961|ribosomal protein L8	AK131970|Rpl8|26961|ribosomal protein L8	AK088263|Rpl8|26961|ribosomal protein L8	AK145498|Rpl8|26961|ribosomal protein L8	AK146330|Rpl8|26961|ribosomal protein L8	AK151408|Rpl8|26961|ribosomal protein L8	AK167775|Rpl8|26961|ribosomal protein L8	AK168332|Rpl8|26961|ribosomal protein L8	AK168769|Rpl8|26961|ribosomal protein L8	U67771|Rpl8|26961|ribosomal protein L8
mm9_v1_chr2_+_181415021_181415025	0.207178	PAX4.p2	BC049617|Tcea2|21400|transcription elongation factor A (SII), 2	BC065786|Tcea2|21400|transcription elongation factor A (SII), 2	BC138504|Tcea2|21400|transcription elongation factor A (SII), 2	BC138505|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr15_+_78757171_78757220	0.207102	PAX4.p2	BC002063|Lgals1|16852|lectin, galactose binding, soluble 1	X51903|Lgals1|16852|lectin, galactose binding, soluble 1	X15986|Lgals1|16852|lectin, galactose binding, soluble 1	X53067|Lgals1|16852|lectin, galactose binding, soluble 1	BC099479|Lgals1|16852|lectin, galactose binding, soluble 1	M57470|Lgals1|16852|lectin, galactose binding, soluble 1	M33214|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr5_-_144775583_144775788	0.206835	PAX4.p2	AK213761|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	BC048077|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	NM_177682|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK090008|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK171671|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK172392|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK146704|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK150793|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152328|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152576|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK153160|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK164888|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
mm9_v1_chr10_+_106708886_106708980	0.205334	PAX4.p2	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr10_+_80720062_80720086	0.20497	PAX4.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr19_-_4125776_4125863	0.20445	PAX4.p2	NM_016666|Aip|11632|aryl-hydrocarbon receptor-interacting protein	U85489|Aip|11632|aryl-hydrocarbon receptor-interacting protein
mm9_v1_chr8_+_108378977_108379101	0.203514	PAX4.p2	NM_021513|Thap11|59016|THAP domain containing 11	AK166109|Thap11|59016|THAP domain containing 11	AK170457|Thap11|59016|THAP domain containing 11	AB041579|Thap11|59016|THAP domain containing 11	AK165981|Thap11|59016|THAP domain containing 11	BC138966|Thap11|59016|THAP domain containing 11	BC138987|Thap11|59016|THAP domain containing 11
mm9_v1_chr17_+_21097558_21097582	0.202553	PAX4.p2	AK180835|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	AK186399|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr2_+_103909961_103910022	0.202167	PAX4.p2	BC038128|Cd59b|333883|CD59b antigen	BC059731|Cd59b|333883|CD59b antigen
mm9_v1_chr2_+_34262399_34262511	0.201367	PAX4.p2	BC043296|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr5_-_3647805_3647982	0.201171	PAX4.p2	BC019449|Gatad1|67210|GATA zinc finger domain containing 1	AK078416|Gatad1|67210|GATA zinc finger domain containing 1	AB047921|Gatad1|67210|GATA zinc finger domain containing 1	AK012921|Gatad1|67210|GATA zinc finger domain containing 1	NM_026033|Gatad1|67210|GATA zinc finger domain containing 1
mm9_v1_chr14_+_56097682_56097776	0.200745	PAX4.p2	AB045132|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK018788|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK146988|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC003484|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr11_-_121090386_121090415	0.20057	PAX4.p2	AK201274|BC017643|217370|cDNA sequence BC017643
mm9_v1_chr17_-_34077264_34077287	0.200316	PAX4.p2	AK076015|H2-Ke2|14976|H2-K region expressed gene 2	AK167900|H2-Ke2|14976|H2-K region expressed gene 2	NM_001185182|H2-Ke2|14976|H2-K region expressed gene 2	AK010679|H2-Ke2|14976|H2-K region expressed gene 2	NM_010385|H2-Ke2|14976|H2-K region expressed gene 2
mm9_v1_chr4_-_119212968_119213006	0.198674	PAX4.p2	AK086686|AA415398|433752|expressed sequence AA415398
mm9_v1_chr17_-_29052264_29052268	0.197992	PAX4.p2	BC117930|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	AK033585|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	NM_172450|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene
mm9_v1_chr11_+_6558494_6558577	0.197975	PAX4.p2	NM_019511|Ramp3|56089|receptor (calcitonin) activity modifying protein 3	AF146524|Ramp3|56089|receptor (calcitonin) activity modifying protein 3	AJ250491|Ramp3|56089|receptor (calcitonin) activity modifying protein 3	BC024765|Ramp3|56089|receptor (calcitonin) activity modifying protein 3	AK005513|Ramp3|56089|receptor (calcitonin) activity modifying protein 3	AF209907|Ramp3|56089|receptor (calcitonin) activity modifying protein 3
mm9_v1_chr5_-_77380226_77380264	0.197749	PAX4.p2	AK160542|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK167057|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK147750|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr9_-_53012444_53012529	0.196764	PAX4.p2	AK166787|Ddx10|77591|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm9_v1_chr14_-_52530382_52530466	0.195933	PAX4.p2	AK076514|Ndrg2|29811|N-myc downstream regulated gene 2	AK173136|Ndrg2|29811|N-myc downstream regulated gene 2
mm9_v1_chr10_-_76086144_76086152	0.19538	PAX4.p2	NM_146007|Col6a2|12834|collagen, type VI, alpha 2
mm9_v1_chr19_-_10278231_10278434	0.193216	PAX4.p2	AK187493|Fen1|14156|flap structure specific endonuclease 1	BC010203|Fen1|14156|flap structure specific endonuclease 1	AK042942|Fen1|14156|flap structure specific endonuclease 1	AK153889|Fen1|14156|flap structure specific endonuclease 1	AK158431|Fen1|14156|flap structure specific endonuclease 1	AK166948|Fen1|14156|flap structure specific endonuclease 1	AK076977|Fen1|14156|flap structure specific endonuclease 1	AK161047|Fen1|14156|flap structure specific endonuclease 1	BC027295|Fen1|14156|flap structure specific endonuclease 1	AK078778|Fen1|14156|flap structure specific endonuclease 1	AK168731|Fen1|14156|flap structure specific endonuclease 1	AK046256|Fen1|14156|flap structure specific endonuclease 1	NM_007999|Fen1|14156|flap structure specific endonuclease 1
mm9_v1_chr15_+_100299545_100299575	0.192805	PAX4.p2	AK046496|Letmd1|68614|LETM1 domain containing 1	AK080221|Letmd1|68614|LETM1 domain containing 1	AK169341|Letmd1|68614|LETM1 domain containing 1	AK032864|Letmd1|68614|LETM1 domain containing 1	AK154676|Letmd1|68614|LETM1 domain containing 1	AK041312|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr19_+_55328356_55328506	0.192694	PAX4.p2	AK151378|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	BC031544|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK161024|Acsl5|433256|acyl-CoA synthetase long-chain family member 5
mm9_v1_chr8_-_87956665_87956752	0.192299	PAX4.p2	BC050139|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK169408|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC027027|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK017512|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK014959|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	NM_025722|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr1_-_67085404_67085478	0.19158	PAX4.p2	Y16518|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	BC058560|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190984|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	Y11550|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AK146120|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AJ294535|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190985|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_021295|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1
mm9_v1_chr19_+_23239333_23239507	0.18972	PAX4.p2	AK177679|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr14_-_21299119_21299187	0.189638	PAX4.p2	AK032013|Anxa7|11750|annexin A7	AK169199|Anxa7|11750|annexin A7	AK167588|Anxa7|11750|annexin A7	BC008997|Anxa7|11750|annexin A7	AK149654|Anxa7|11750|annexin A7	AK077579|Anxa7|11750|annexin A7	AK041855|Anxa7|11750|annexin A7	AK151438|Anxa7|11750|annexin A7	AK161613|Anxa7|11750|annexin A7	AK134589|Anxa7|11750|annexin A7
mm9_v1_chr10_+_80614066_80614217	0.189138	PAX4.p2	AK018596|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr11_+_86497484_86497540	0.188163	PAX4.p2	NM_175004|Ptrh2|217057|peptidyl-tRNA hydrolase 2	AK028555|Ptrh2|217057|peptidyl-tRNA hydrolase 2	AK038888|Ptrh2|217057|peptidyl-tRNA hydrolase 2
mm9_v1_chr17_-_51951378_51951378	0.187974	PAX4.p2	AK158518|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163630|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr18_+_90679499_90679549	0.187044	PAX4.p2	AK140709|Tmx3|67988|thioredoxin-related transmembrane protein 3	NM_198295|Tmx3|67988|thioredoxin-related transmembrane protein 3
mm9_v1_chr2_+_177876635_177876639	0.186931	PAX4.p2	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr7_-_52622323_52622350	0.18444	PAX4.p2	
mm9_v1_chr7_-_3644255_3644381	0.182235	PAX4.p2	AK158998|Mboat7|77582|membrane bound O-acyltransferase domain containing 7	AK134975|Mboat7|77582|membrane bound O-acyltransferase domain containing 7
mm9_v1_chr2_+_158132228_158132404	0.18203	PAX4.p2	AK143562|Lbp|16803|lipopolysaccharide binding protein	NM_008489|Lbp|16803|lipopolysaccharide binding protein	X99347|Lbp|16803|lipopolysaccharide binding protein	BC004795|Lbp|16803|lipopolysaccharide binding protein	AK158105|Lbp|16803|lipopolysaccharide binding protein
mm9_v1_chr14_-_56341010_56341044	0.181084	PAX4.p2	AF127656|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127657|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127658|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127659|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127660|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127661|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127662|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	NM_019519|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	BC012214|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AK146917|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr17_-_34077154_34077262	0.180561	PAX4.p2	AK177303|H2-Ke2|14976|H2-K region expressed gene 2	M65255|H2-Ke2|14976|H2-K region expressed gene 2	BC022974|H2-Ke2|14976|H2-K region expressed gene 2
mm9_v1_chr13_-_58228079_58228222	0.178996	PAX4.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr12_+_79962998_79963115	0.177801	PAX4.p2	BC016448|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	BC016497|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	AK143499|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	NM_026114|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	AK167763|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	BC005463|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha
mm9_v1_chr5_+_114581164_114581232	0.177759	PAX4.p2	NM_011677|Ung|22256|uracil DNA glycosylase	X99018|Ung|22256|uracil DNA glycosylase	U55041|Ung|22256|uracil DNA glycosylase	AK168709|Ung|22256|uracil DNA glycosylase	AK168785|Ung|22256|uracil DNA glycosylase	BC052853|Ung|22256|uracil DNA glycosylase
mm9_v1_chr14_-_65059694_65059876	0.17703	PAX4.p2	AK002356|Msra|110265|methionine sulfoxide reductase A	AK009822|Msra|110265|methionine sulfoxide reductase A	AK030278|Msra|110265|methionine sulfoxide reductase A	BC014738|Msra|110265|methionine sulfoxide reductase A	AK049714|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chr6_-_124718354_124718380	0.17612	PAX4.p2	AK170169|Eno2|13807|enolase 2, gamma neuronal	AK134571|Eno2|13807|enolase 2, gamma neuronal
mm9_v1_chr5_-_136386463_136386544	0.175127	PAX4.p2	AK192597|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK208362|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr15_-_98593432_98593456	0.174654	PAX4.p2	AK195626|Arf3|11842|ADP-ribosylation factor 3
mm9_v1_chr19_-_40261753_40261779	0.174362	PAX4.p2	BC022151|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC023894|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AY227736|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC034831|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC016494|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AK050082|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	NM_145499|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70
mm9_v1_chr7_+_149646740_149646803	0.172323	PAX4.p2	BC044736|Lsp1|16985|lymphocyte specific 1	AK003081|Lsp1|16985|lymphocyte specific 1	M89956|Lsp1|16985|lymphocyte specific 1	NM_001136071|Lsp1|16985|lymphocyte specific 1	S74179|Lsp1|16985|lymphocyte specific 1
mm9_v1_chr3_+_95465860_95465866	0.171819	PAX4.p2	AK160634|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr19_+_5493612_5493771	0.171284	PAX4.p2	AK195534|Cfl1|12631|cofilin 1, non-muscle	AK198064|Cfl1|12631|cofilin 1, non-muscle	AK200194|Cfl1|12631|cofilin 1, non-muscle	AK208902|Cfl1|12631|cofilin 1, non-muscle	AK215762|Cfl1|12631|cofilin 1, non-muscle
mm9_v1_chr17_-_46290499_46290503	0.171235	PAX4.p2	AK156569|Mad2l1bp|66591|MAD2L1 binding protein	NM_025649|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr8_+_85689973_85690078	0.171228	PAX4.p2	AK134614|Tbc1d9|71310|TBC1 domain family, member 9	AK173050|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr1_-_166237342_166237430	0.169783	PAX4.p2	AK005489|Blzf1|66352|basic leucine zipper nuclear factor 1	AK168933|Blzf1|66352|basic leucine zipper nuclear factor 1	BC027025|Blzf1|66352|basic leucine zipper nuclear factor 1	AK171167|Blzf1|66352|basic leucine zipper nuclear factor 1
mm9_v1_chr2_+_84776809_84776813	0.169719	PAX4.p2	NM_021398|Slc43a3|58207|solute carrier family 43, member 3
mm9_v1_chr14_-_77436363_77436492	0.169608	PAX4.p2	AK152154|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK033565|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	NM_172488|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK153349|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene
mm9_v1_chr17_-_47027336_47027357	0.169051	PAX4.p2	AK039293|A330017A19Rik|442840|RIKEN cDNA A330017A19 gene
mm9_v1_chr6_-_124915441_124915537	0.168922	PAX4.p2	AK013155|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010726|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010417|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK019122|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK008474|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr14_-_73762933_73762949	0.16847	PAX4.p2	AK002796|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr5_-_46247789_46247790	0.168365	PAX4.p2	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr2_-_101489613_101489698	0.168288	PAX4.p2	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr17_+_36974055_36974078	0.168108	PAX4.p2	AK142476|Trim26|22670|tripartite motif-containing 26
mm9_v1_chr2_+_119500777_119500991	0.168063	PAX4.p2	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr7_+_53138934_53138972	0.167707	PAX4.p2	
mm9_v1_chr2_+_144096752_144096785	0.166665	PAX4.p2	AK031535|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK049565|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	NM_028984|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene
mm9_v1_chr14_-_103379725_103379759	0.166382	PAX4.p2	AK086988|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK032276|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr1_+_111880313_111880391	0.166045	PAX4.p2	AK034096|Cdh7|241201|cadherin 7, type 2	NM_172853|Cdh7|241201|cadherin 7, type 2	AK137369|Cdh7|241201|cadherin 7, type 2
mm9_v1_chr17_+_46247928_46248012	0.165577	PAX4.p2	AB049953|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK003444|Mrps18a|68565|mitochondrial ribosomal protein S18A	NM_026768|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK028226|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK172171|Mrps18a|68565|mitochondrial ribosomal protein S18A	BC058959|Mrps18a|68565|mitochondrial ribosomal protein S18A
mm9_v1_chr2_-_132078946_132078953	0.16548	PAX4.p2	AK151411|Pcna|18538|proliferating cell nuclear antigen
mm9_v1_chr19_-_24299471_24299519	0.162201	PAX4.p2	NM_011597|Tjp2|21873|tight junction protein 2
mm9_v1_chr15_-_77950450_77950459	0.161881	PAX4.p2	AK045362|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr9_-_44152242_44152310	0.161329	PAX4.p2	AK153884|Hmbs|15288|hydroxymethylbilane synthase	BC003861|Hmbs|15288|hydroxymethylbilane synthase	AK167702|Hmbs|15288|hydroxymethylbilane synthase	AK151020|Hmbs|15288|hydroxymethylbilane synthase	NM_013551|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr8_+_119984482_119984512	0.16081	PAX4.p2	AK020023|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr2_-_32639934_32639947	0.159565	PAX4.p2	AK006127|1700019L03Rik|227736|RIKEN cDNA 1700019L03 gene
mm9_v1_chr3_-_143868114_143868170	0.158806	PAX4.p2	AK033097|Lmo4|16911|LIM domain only 4	AK159590|Lmo4|16911|LIM domain only 4
mm9_v1_chr9_-_97011440_97011575	0.158746	PAX4.p2	BC008171|Slc25a36|192287|solute carrier family 25, member 36	AK078779|Slc25a36|192287|solute carrier family 25, member 36	NM_138756|Slc25a36|192287|solute carrier family 25, member 36	AK042075|Slc25a36|192287|solute carrier family 25, member 36	AK053646|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr4_+_102243132_102243254	0.158653	PAX4.p2	AK171700|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AK150868|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr5_+_144165615_144165640	0.158424	PAX4.p2	CT010232|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm9_v1_chr14_+_55502261_55502285	0.158309	PAX4.p2	AF030769|Bcl2l2|12050|BCL2-like 2	NM_007537|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr11_-_51414597_51414704	0.158117	PAX4.p2	AK193201|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK196074|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK186800|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr4_+_57906588_57906598	0.157862	PAX4.p2	AK081365|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr15_+_89116972_89117036	0.155998	PAX4.p2	AK080435|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chr6_+_114593104_114593174	0.155619	PAX4.p2	AK007484|Atg7|74244|autophagy-related 7 (yeast)	NM_028835|Atg7|74244|autophagy-related 7 (yeast)	AK166023|Atg7|74244|autophagy-related 7 (yeast)	AK170769|Atg7|74244|autophagy-related 7 (yeast)	AK146992|Atg7|74244|autophagy-related 7 (yeast)	AK161133|Atg7|74244|autophagy-related 7 (yeast)	AK165653|Atg7|74244|autophagy-related 7 (yeast)	AK166074|Atg7|74244|autophagy-related 7 (yeast)	AK171968|Atg7|74244|autophagy-related 7 (yeast)	AK172272|Atg7|74244|autophagy-related 7 (yeast)	BC058597|Atg7|74244|autophagy-related 7 (yeast)
mm9_v1_chr4_+_126287086_126287097	0.155525	PAX4.p2	NM_001013755|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene	NM_001145950|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene
mm9_v1_chr8_+_119983664_119983684	0.153746	PAX4.p2	
mm9_v1_chr2_+_119456102_119456195	0.15283	PAX4.p2	BC009096|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr17_-_35371948_35372113	0.152607	PAX4.p2	X96706|Nfkbil1|18038|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1
mm9_v1_chr7_-_13639862_13640112	0.152588	PAX4.p2	BC129904|Mzf1|109889|myeloid zinc finger 1	BC129905|Mzf1|109889|myeloid zinc finger 1	AK145014|Mzf1|109889|myeloid zinc finger 1	AB088478|Mzf1|109889|myeloid zinc finger 1	BC060649|Mzf1|109889|myeloid zinc finger 1	AK030410|Mzf1|109889|myeloid zinc finger 1	NM_145819|Mzf1|109889|myeloid zinc finger 1
mm9_v1_chrX_+_132806184_132806337	0.151738	PAX4.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr1_-_58558259_58558259	0.15143	PAX4.p2	AB190256|Orc2|18393|origin recognition complex, subunit 2	NM_001025378|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr3_-_126865259_126865312	0.151303	PAX4.p2	AK083111|Ank2|109676|ankyrin 2, brain
mm9_v1_chr3_+_52072302_52072340	0.150827	PAX4.p2	AK137629|Foxo1|56458|forkhead box O1	AF114258|Foxo1|56458|forkhead box O1
mm9_v1_chr4_+_120339167_120339220	0.150668	PAX4.p2	NM_019563|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AK012136|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AK154030|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC025116|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC080723|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AF143369|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC132360|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC132362|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
mm9_v1_chr7_+_89003886_89004046	0.150299	PAX4.p2	AK083132|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK135100|Tm6sf1|107769|transmembrane 6 superfamily member 1	NM_145375|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK163621|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK172109|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK046714|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK172145|Tm6sf1|107769|transmembrane 6 superfamily member 1	BC023123|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK162572|Tm6sf1|107769|transmembrane 6 superfamily member 1
mm9_v1_chr1_-_180260325_180260384	0.148997	PAX4.p2	
mm9_v1_chr7_-_52622289_52622302	0.148622	PAX4.p2	BC058404|Ppfia3|76787|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	EU568871|Ppfia3|76787|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
mm9_v1_chr5_+_144165482_144165519	0.148511	PAX4.p2	NM_025841|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK003515|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK150402|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AJ278133|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK007403|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	BC007146|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm9_v1_chr17_+_57136748_57136795	0.148124	PAX4.p2	AK010930|Alkbh7|66400|alkB, alkylation repair homolog 7 (E. coli)	AK009812|Alkbh7|66400|alkB, alkylation repair homolog 7 (E. coli)	NM_025538|Alkbh7|66400|alkB, alkylation repair homolog 7 (E. coli)	AK007380|Alkbh7|66400|alkB, alkylation repair homolog 7 (E. coli)	BC029677|Alkbh7|66400|alkB, alkylation repair homolog 7 (E. coli)
mm9_v1_chr5_-_111209468_111209636	0.147544	PAX4.p2	BC021446|Pus1|56361|pseudouridine synthase 1	BC034359|Pus1|56361|pseudouridine synthase 1	AB041563|Pus1|56361|pseudouridine synthase 1	AK089258|Pus1|56361|pseudouridine synthase 1	NM_001025561|Pus1|56361|pseudouridine synthase 1	NM_019700|Pus1|56361|pseudouridine synthase 1	NM_001025562|Pus1|56361|pseudouridine synthase 1	AK161521|Pus1|56361|pseudouridine synthase 1
mm9_v1_chr6_-_136783899_136783972	0.147103	PAX4.p2	AK047766|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene	AK045581|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene	NM_001039558|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene	AK078719|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene
mm9_v1_chr9_+_65756816_65756864	0.147079	PAX4.p2	AK090262|Csnk1g1|214897|casein kinase 1, gamma 1	NM_173185|Csnk1g1|214897|casein kinase 1, gamma 1	AK050473|Csnk1g1|214897|casein kinase 1, gamma 1	AK149310|Csnk1g1|214897|casein kinase 1, gamma 1
mm9_v1_chr6_-_120772683_120772817	0.146669	PAX4.p2	BC003421|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	NM_007510|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AB074758|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK146162|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK169854|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK010603|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK139791|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK149356|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr15_+_75427044_75427088	0.146585	PAX4.p2	AK003305|Gpihbp1|68453|GPI-anchored HDL-binding protein 1	AB095543|Gpihbp1|68453|GPI-anchored HDL-binding protein 1	AK050431|Gpihbp1|68453|GPI-anchored HDL-binding protein 1	BC061225|Gpihbp1|68453|GPI-anchored HDL-binding protein 1	NM_026730|Gpihbp1|68453|GPI-anchored HDL-binding protein 1
mm9_v1_chr14_-_79872206_79872215	0.146583	PAX4.p2	U40746|Wbp4|22380|WW domain binding protein 4
mm9_v1_chr6_+_51420358_51420464	0.146523	PAX4.p2	BC110376|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)
mm9_v1_chr12_-_21291800_21292119	0.146487	PAX4.p2	AK007635|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK089937|Itgb1bp1|16413|integrin beta 1 binding protein 1	BC021151|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK147929|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK002786|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK004172|Itgb1bp1|16413|integrin beta 1 binding protein 1	AJ001373|Itgb1bp1|16413|integrin beta 1 binding protein 1	AK075577|Itgb1bp1|16413|integrin beta 1 binding protein 1	NM_008403|Itgb1bp1|16413|integrin beta 1 binding protein 1
mm9_v1_chr2_+_125860507_125860527	0.146402	PAX4.p2	AK086639|Fgf7|14178|fibroblast growth factor 7	BC052847|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chr17_+_43804373_43804482	0.146352	PAX4.p2	AK031733|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	NM_018887|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC021418|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	AF237981|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC037663|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1
mm9_v1_chr9_+_121628527_121628572	0.145756	PAX4.p2	BC048414|Nktr|18087|natural killer tumor recognition sequence	AK035582|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr9_-_106378901_106379002	0.144936	PAX4.p2	BC062204|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK044223|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK088125|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AF368233|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	NM_145619|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK145259|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr2_-_24790645_24790743	0.144792	PAX4.p2	AK088008|Arrdc1|215705|arrestin domain containing 1	AK170018|Arrdc1|215705|arrestin domain containing 1	BC018501|Arrdc1|215705|arrestin domain containing 1	BC004091|Arrdc1|215705|arrestin domain containing 1
mm9_v1_chr11_+_89892027_89892040	0.144405	PAX4.p2	AK003574|Tmem100|67888|transmembrane protein 100	AK033406|Tmem100|67888|transmembrane protein 100
mm9_v1_chr7_-_125728199_125728260	0.143249	PAX4.p2	AK083189|Tmc7|209760|transmembrane channel-like gene family 7	NM_172476|Tmc7|209760|transmembrane channel-like gene family 7	AK006547|Tmc7|209760|transmembrane channel-like gene family 7	AK082562|Tmc7|209760|transmembrane channel-like gene family 7	AK132820|Tmc7|209760|transmembrane channel-like gene family 7	AY263161|Tmc7|209760|transmembrane channel-like gene family 7	AY236499|Tmc7|209760|transmembrane channel-like gene family 7
mm9_v1_chr14_-_47006944_47006954	0.143088	PAX4.p2	BC052846|Bmp4|12159|bone morphogenetic protein 4
mm9_v1_chr8_-_107871822_107871869	0.142858	PAX4.p2	AK030737|Fhod1|234686|formin homology 2 domain containing 1	BC060654|Fhod1|234686|formin homology 2 domain containing 1	NM_177699|Fhod1|234686|formin homology 2 domain containing 1
mm9_v1_chr8_+_112603609_112603709	0.142673	PAX4.p2	NM_175480|Zfp612|234725|zinc finger protein 612	BC048413|Zfp612|234725|zinc finger protein 612	AK133449|Zfp612|234725|zinc finger protein 612	AK046220|Zfp612|234725|zinc finger protein 612
mm9_v1_chr2_-_163470870_163470922	0.142627	PAX4.p2	NM_012032|Serinc3|26943|serine incorporator 3
mm9_v1_chr2_-_105843271_105843398	0.142415	PAX4.p2	BC091774|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24	AY028460|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24
mm9_v1_chr10_+_126827366_126827366	0.141756	PAX4.p2	NM_001168292|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr11_-_118151298_118151557	0.141748	PAX4.p2	AK129363|Usp36|72344|ubiquitin specific peptidase 36	AK079342|Usp36|72344|ubiquitin specific peptidase 36	AK165635|Usp36|72344|ubiquitin specific peptidase 36	AK049205|Usp36|72344|ubiquitin specific peptidase 36	AK028572|Usp36|72344|ubiquitin specific peptidase 36	NM_001033528|Usp36|72344|ubiquitin specific peptidase 36
mm9_v1_chr1_+_157405657_157405756	0.141274	PAX4.p2	BC115580|Acbd6|72482|acyl-Coenzyme A binding domain containing 6	BC115581|Acbd6|72482|acyl-Coenzyme A binding domain containing 6
mm9_v1_chr17_-_43013320_43013409	0.140983	PAX4.p2	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr4_-_154735351_154735519	0.139808	PAX4.p2	BC139761|Prkcz|18762|protein kinase C, zeta	M94632|Prkcz|18762|protein kinase C, zeta	AK165750|Prkcz|18762|protein kinase C, zeta	NM_008860|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr14_+_77436555_77436670	0.13948	PAX4.p2	AK077161|Ccdc122|108811|coiled-coil domain containing 122	NM_175369|Ccdc122|108811|coiled-coil domain containing 122	BC096577|Ccdc122|108811|coiled-coil domain containing 122	BC138881|Ccdc122|108811|coiled-coil domain containing 122	BC138883|Ccdc122|108811|coiled-coil domain containing 122	BC145455|Ccdc122|108811|coiled-coil domain containing 122
mm9_v1_chr6_+_124915623_124915638	0.139383	PAX4.p2	
mm9_v1_chr2_+_120802698_120802797	0.138481	PAX4.p2	AK161890|Tmem62|96957|transmembrane protein 62	BC070410|Tmem62|96957|transmembrane protein 62	NM_175285|Tmem62|96957|transmembrane protein 62
mm9_v1_chr3_+_60276971_60277044	0.138319	PAX4.p2	AK153827|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr11_+_120459734_120459836	0.138101	PAX4.p2	NM_025389|Anapc11|66156|anaphase promoting complex subunit 11	AK158224|Anapc11|66156|anaphase promoting complex subunit 11	AK003612|Anapc11|66156|anaphase promoting complex subunit 11	AK045408|Anapc11|66156|anaphase promoting complex subunit 11	AK003244|Anapc11|66156|anaphase promoting complex subunit 11	AK136358|Anapc11|66156|anaphase promoting complex subunit 11
mm9_v1_chr16_+_43619057_43619100	0.137445	PAX4.p2	AK178854|Zbtb20|56490|zinc finger and BTB domain containing 20	AK013698|Zbtb20|56490|zinc finger and BTB domain containing 20	AK036125|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr7_+_3293008_3293247	0.13653	PAX4.p2	NM_001093766|Myadm|50918|myeloid-associated differentiation marker	BC119364|Myadm|50918|myeloid-associated differentiation marker	BC119368|Myadm|50918|myeloid-associated differentiation marker
mm9_v1_chr9_+_96019793_96019850	0.136239	PAX4.p2	AK160477|Gk5|235533|glycerol kinase 5 (putative)	AK076293|Gk5|235533|glycerol kinase 5 (putative)	AK167217|Gk5|235533|glycerol kinase 5 (putative)	AK049275|Gk5|235533|glycerol kinase 5 (putative)	AK162119|Gk5|235533|glycerol kinase 5 (putative)	NM_177352|Gk5|235533|glycerol kinase 5 (putative)	AK163031|Gk5|235533|glycerol kinase 5 (putative)	BC116302|Gk5|235533|glycerol kinase 5 (putative)	BC116303|Gk5|235533|glycerol kinase 5 (putative)
mm9_v1_chr10_+_17775737_17775881	0.134198	PAX4.p2	NM_001111065|Reps1|19707|RalBP1 associated Eps domain containing protein	NM_009048|Reps1|19707|RalBP1 associated Eps domain containing protein	BC087547|Reps1|19707|RalBP1 associated Eps domain containing protein	AK150284|Reps1|19707|RalBP1 associated Eps domain containing protein	AK151309|Reps1|19707|RalBP1 associated Eps domain containing protein
mm9_v1_chr9_-_45763300_45763376	0.133338	PAX4.p2	AK081177|Sidt2|214597|SID1 transmembrane family, member 2	BC023957|Sidt2|214597|SID1 transmembrane family, member 2	NM_172257|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr3_+_95733186_95733221	0.132448	PAX4.p2	AK088401|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK012759|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK049647|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK159446|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK147888|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chr1_+_173341811_173341858	0.132325	PAX4.p2	NM_009480|Usf1|22278|upstream transcription factor 1
mm9_v1_chrX_+_130442964_130443234	0.13182	PAX4.p2	NM_001083895|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	NM_026838|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	AK136935|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	BC028307|Srpx2|68792|sushi-repeat-containing protein, X-linked 2
mm9_v1_chr14_-_73762840_73762848	0.131416	PAX4.p2	AK205546|Itm2b|16432|integral membrane protein 2B	AK205709|Itm2b|16432|integral membrane protein 2B	AK209176|Itm2b|16432|integral membrane protein 2B	AK215843|Itm2b|16432|integral membrane protein 2B	AK217202|Itm2b|16432|integral membrane protein 2B	AK218926|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr2_-_101469142_101469167	0.131254	PAX4.p2	AK020980|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	AK051679|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_026592|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	BC025075|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	AK158171|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene
mm9_v1_chr14_-_73785067_73785067	0.1304	PAX4.p2	AK005125|Itm2b|16432|integral membrane protein 2B	AK152731|Itm2b|16432|integral membrane protein 2B	AK159962|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr1_-_95518831_95518886	0.130118	PAX4.p2	AK211456|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr12_+_77182878_77182935	0.129159	PAX4.p2	FJ848978|Syne2|319565|synaptic nuclear envelope 2
mm9_v1_chr2_+_34628721_34628809	0.127726	PAX4.p2	AK219322|Hspa5|14828|heat shock protein 5
mm9_v1_chr6_-_48658211_48658242	0.127648	PAX4.p2	AK030902|Gimap6|231931|GTPase, IMAP family member 6	AK087275|Gimap6|231931|GTPase, IMAP family member 6	AF503921|Gimap6|231931|GTPase, IMAP family member 6	NM_153175|Gimap6|231931|GTPase, IMAP family member 6
mm9_v1_chr5_+_123526279_123526440	0.127187	PAX4.p2	NM_001039723|Tmem120b|330189|transmembrane protein 120B	AK132283|Tmem120b|330189|transmembrane protein 120B	AK158123|Tmem120b|330189|transmembrane protein 120B	BC022593|Tmem120b|330189|transmembrane protein 120B	BC115785|Tmem120b|330189|transmembrane protein 120B	BC118014|Tmem120b|330189|transmembrane protein 120B	AK172110|Tmem120b|330189|transmembrane protein 120B
mm9_v1_chr10_-_94786634_94786766	0.127028	PAX4.p2	AK052304|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK136561|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AJ224738|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	NM_009950|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK163112|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK144648|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain
mm9_v1_chr9_+_65907975_65908077	0.12627	PAX4.p2	NM_011149|Ppib|19035|peptidylprolyl isomerase B	AK128977|Ppib|19035|peptidylprolyl isomerase B	AK002357|Ppib|19035|peptidylprolyl isomerase B	AK154073|Ppib|19035|peptidylprolyl isomerase B	M60456|Ppib|19035|peptidylprolyl isomerase B	BC013061|Ppib|19035|peptidylprolyl isomerase B
mm9_v1_chr12_+_103521355_103521400	0.125852	PAX4.p2	BC137907|Rin3|217835|Ras and Rab interactor 3	AK133988|Rin3|217835|Ras and Rab interactor 3	AK167187|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr19_+_29038435_29038489	0.125523	PAX4.p2	BC052412|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr11_-_61191548_61191595	0.125401	PAX4.p2	BC031436|Slc47a1|67473|solute carrier family 47, member 1	AK004994|Slc47a1|67473|solute carrier family 47, member 1	NM_026183|Slc47a1|67473|solute carrier family 47, member 1
mm9_v1_chr8_+_109034784_109034845	0.124491	PAX4.p2	AK045041|Cdh3|12560|cadherin 3	AK164577|Cdh3|12560|cadherin 3	NM_007665|Cdh3|12560|cadherin 3	AK031265|Cdh3|12560|cadherin 3	NM_001037809|Cdh3|12560|cadherin 3	X06340|Cdh3|12560|cadherin 3	BC098459|Cdh3|12560|cadherin 3
mm9_v1_chrX_-_20194689_20194694	0.122788	PAX4.p2	NM_019435|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr8_+_116963542_116963590	0.122698	PAX4.p2	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr16_+_45094163_45094171	0.122557	PAX4.p2	AK132178|Ccdc80|67896|coiled-coil domain containing 80	NM_026439|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr1_-_23929098_23929255	0.122518	PAX4.p2	BC006946|Smap1|98366|stromal membrane-associated protein 1	NM_028534|Smap1|98366|stromal membrane-associated protein 1	BC100537|Smap1|98366|stromal membrane-associated protein 1
mm9_v1_chr6_+_3954259_3954308	0.121943	PAX4.p2	AK009529|Gng11|66066|guanine nucleotide binding protein (G protein), gamma 11	BC040065|Gng11|66066|guanine nucleotide binding protein (G protein), gamma 11
mm9_v1_chr4_+_144483110_144483188	0.121748	PAX4.p2	AK087137|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr19_+_23240506_23240595	0.121535	PAX4.p2	AK187278|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr2_-_158054870_158054968	0.121349	PAX4.p2	BC137959|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	BC137960|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	AK052605|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	NM_001131021|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	NM_177657|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	AK168367|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene
mm9_v1_chr11_+_5662121_5662197	0.1192	PAX4.p2	AK009198|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK005556|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK008730|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC052911|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC094935|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene
mm9_v1_chr9_+_78243583_78243583	0.11815	PAX4.p2	NM_001191044|Ddx43|100048658|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
mm9_v1_chr4_-_116312569_116312608	0.117923	PAX4.p2	AK216201|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK200998|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK184360|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK187660|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK189553|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK196298|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr11_+_3352465_3352485	0.117682	PAX4.p2	AK018450|8430429K09Rik|71523|RIKEN cDNA 8430429K09 gene	AK086952|8430429K09Rik|71523|RIKEN cDNA 8430429K09 gene
mm9_v1_chr17_+_48485725_48485880	0.117536	PAX4.p2	BC052784|Trem2|83433|triggering receptor expressed on myeloid cells 2	NM_031254|Trem2|83433|triggering receptor expressed on myeloid cells 2	AK171358|Trem2|83433|triggering receptor expressed on myeloid cells 2	AK155163|Trem2|83433|triggering receptor expressed on myeloid cells 2	AY024348|Trem2|83433|triggering receptor expressed on myeloid cells 2	AF213458|Trem2|83433|triggering receptor expressed on myeloid cells 2	AK039477|Trem2|83433|triggering receptor expressed on myeloid cells 2	BC033485|Trem2|83433|triggering receptor expressed on myeloid cells 2	BC032959|Trem2|83433|triggering receptor expressed on myeloid cells 2	AY187009|Trem2|83433|triggering receptor expressed on myeloid cells 2	AY024349|Trem2|83433|triggering receptor expressed on myeloid cells 2
mm9_v1_chr8_+_86939262_86939275	0.116158	PAX4.p2	AK147288|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	NM_007578|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147277|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147498|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147697|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr10_-_6080145_6080228	0.116049	PAX4.p2	BC138365|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	BC138364|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB020886|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	BC071185|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AF326228|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB051563|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB025278|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AK053844|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	NM_031185|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12
mm9_v1_chr17_+_24873606_24873638	0.116023	PAX4.p2	AF195142|Sepx1|27361|selenoprotein X 1	BC141146|Sepx1|27361|selenoprotein X 1	AK002339|Sepx1|27361|selenoprotein X 1	AK002652|Sepx1|27361|selenoprotein X 1	AK003112|Sepx1|27361|selenoprotein X 1	AK003624|Sepx1|27361|selenoprotein X 1
mm9_v1_chr10_+_77085039_77085135	0.115846	PAX4.p2	AK154464|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK146554|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	BC010321|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	NM_019803|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK136365|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AF296657|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK183367|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK185288|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2
mm9_v1_chr8_+_37520601_37520649	0.115732	PAX4.p2	AK032504|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene	AK038497|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene	AK089162|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene
mm9_v1_chr11_-_96777696_96777844	0.115654	PAX4.p2	AK153951|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK077853|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	BC002318|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	NM_030248|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK075791|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK165494|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK075771|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK050014|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK149765|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK166476|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3
mm9_v1_chr13_-_54561296_54561396	0.115433	PAX4.p2	AK216441|Thoc3|73666|THO complex 3
mm9_v1_chr2_+_150735306_150735352	0.115076	PAX4.p2	NM_001163476|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	NM_027014|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	AK013116|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	BC027537|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)
mm9_v1_chr1_+_176066876_176066876	0.114541	PAX4.p2	BC104096|Olfr424|258716|olfactory receptor 424	BC104097|Olfr424|258716|olfactory receptor 424	NM_146721|Olfr424|258716|olfactory receptor 424
mm9_v1_chr6_+_113433656_113433876	0.114252	PAX4.p2	BC025932|Creld1|171508|cysteine-rich with EGF-like domains 1	AK186017|Creld1|171508|cysteine-rich with EGF-like domains 1	AK195695|Creld1|171508|cysteine-rich with EGF-like domains 1	AK208544|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr2_+_181415029_181415076	0.114173	PAX4.p2	AB010271|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr8_+_73054891_73055139	0.113652	PAX4.p2	AK177460|Fkbp8|14232|FK506 binding protein 8	AK184741|Fkbp8|14232|FK506 binding protein 8	AK182349|Fkbp8|14232|FK506 binding protein 8	AK197324|Fkbp8|14232|FK506 binding protein 8	AK209719|Fkbp8|14232|FK506 binding protein 8	AK212094|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr16_+_94906703_94906712	0.113599	PAX4.p2	BC048837|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr19_-_29101759_29101824	0.113161	PAX4.p2	
mm9_v1_chr7_-_29185514_29185554	0.112988	PAX4.p2	AK133691|Samd4b|233033|sterile alpha motif domain containing 4B
mm9_v1_chr10_-_6606128_6606213	0.112396	PAX4.p2	AK033676|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	AK034403|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	NM_001159942|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm9_v1_chr8_-_23587282_23587355	0.111984	PAX4.p2	BC048089|AI316807|102032|expressed sequence AI316807	NM_001012667|AI316807|102032|expressed sequence AI316807	NM_001146117|AI316807|102032|expressed sequence AI316807	AK133712|AI316807|102032|expressed sequence AI316807
mm9_v1_chr11_-_48684659_48684935	0.11123	PAX4.p2	BC145957|Irgm1|15944|immunity-related GTPase family M member 1	AK171743|Irgm1|15944|immunity-related GTPase family M member 1	NM_008326|Irgm1|15944|immunity-related GTPase family M member 1	U19119|Irgm1|15944|immunity-related GTPase family M member 1	AK002545|Irgm1|15944|immunity-related GTPase family M member 1	AK167558|Irgm1|15944|immunity-related GTPase family M member 1
mm9_v1_chr19_+_56623108_56623165	0.110044	PAX4.p2	AK004564|Nhlrc2|66866|NHL repeat containing 2	AK002650|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chrX_+_150266835_150266835	0.1085	PAX4.p2	BC068162|Spin2|278240|spindlin family, member 2	NM_001005370|Spin2|278240|spindlin family, member 2
mm9_v1_chr5_+_108329554_108329638	0.108278	PAX4.p2	AK013107|Rpl5|100503670|ribosomal protein L5	AK032778|Rpl5|100503670|ribosomal protein L5	AK152381|Rpl5|100503670|ribosomal protein L5	AK008489|Rpl5|100503670|ribosomal protein L5	AK169313|Rpl5|100503670|ribosomal protein L5	AK088036|Rpl5|100503670|ribosomal protein L5	BC005790|Rpl5|100503670|ribosomal protein L5	BC083318|Rpl5|100503670|ribosomal protein L5	BC026934|Rpl5|100503670|ribosomal protein L5	BC091752|Rpl5|100503670|ribosomal protein L5	NM_016980|Rpl5|100503670|ribosomal protein L5	AK166865|Rpl5|100503670|ribosomal protein L5	BC106128|Rpl5|100503670|ribosomal protein L5
mm9_v1_chr9_-_45763233_45763277	0.108257	PAX4.p2	AK155875|Sidt2|214597|SID1 transmembrane family, member 2	AK152371|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chrX_-_98463514_98463571	0.107825	PAX4.p2	D13821|Il2rg|16186|interleukin 2 receptor, gamma chain	D13565|Il2rg|16186|interleukin 2 receptor, gamma chain	BC014720|Il2rg|16186|interleukin 2 receptor, gamma chain	AK143669|Il2rg|16186|interleukin 2 receptor, gamma chain	L20048|Il2rg|16186|interleukin 2 receptor, gamma chain	AK153873|Il2rg|16186|interleukin 2 receptor, gamma chain	NM_013563|Il2rg|16186|interleukin 2 receptor, gamma chain	X75337|Il2rg|16186|interleukin 2 receptor, gamma chain
mm9_v1_chr6_-_120772651_120772678	0.107549	PAX4.p2	AK189499|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK186366|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK189578|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK167644|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr6_+_137359231_137359310	0.106518	PAX4.p2	NM_001164402|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_001164403|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37465|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37466|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr19_-_8787823_8787985	0.106407	PAX4.p2	AK215373|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK156285|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
mm9_v1_chr18_-_61946299_61946348	0.105808	PAX4.p2	AK053714|Afap1l1|106877|actin filament associated protein 1-like 1	AK035227|Afap1l1|106877|actin filament associated protein 1-like 1	NM_178928|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr11_-_97372344_97372370	0.105166	PAX4.p2	AK051643|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr6_-_113481546_113481673	0.103924	PAX4.p2	AK020058|Tmem111|66087|transmembrane protein 111	AK046264|Tmem111|66087|transmembrane protein 111	BC004641|Tmem111|66087|transmembrane protein 111	AK075595|Tmem111|66087|transmembrane protein 111	NM_175101|Tmem111|66087|transmembrane protein 111	AK164779|Tmem111|66087|transmembrane protein 111
mm9_v1_chr5_+_117864837_117864837	0.103706	PAX4.p2	DQ531035|Ksr2|333050|kinase suppressor of ras 2	NM_001114545|Ksr2|333050|kinase suppressor of ras 2
mm9_v1_chr4_+_126287109_126287125	0.101602	PAX4.p2	AK077438|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene
mm9_v1_chr17_+_28369642_28369770	0.100876	PAX4.p2	NM_011145|Ppard|19015|peroxisome proliferator activator receptor delta	AK154567|Ppard|19015|peroxisome proliferator activator receptor delta	BC070398|Ppard|19015|peroxisome proliferator activator receptor delta	AK089913|Ppard|19015|peroxisome proliferator activator receptor delta
mm9_v1_chr11_-_106642684_106642809	0.100659	PAX4.p2	AK149022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr7_-_87679873_87680004	0.100321	PAX4.p2	AB008674|Blm|12144|Bloom syndrome, RecQ helicase-like	NM_007550|Blm|12144|Bloom syndrome, RecQ helicase-like	AK164605|Blm|12144|Bloom syndrome, RecQ helicase-like	Z98263|Blm|12144|Bloom syndrome, RecQ helicase-like	AK137022|Blm|12144|Bloom syndrome, RecQ helicase-like	AK157898|Blm|12144|Bloom syndrome, RecQ helicase-like	NM_001042527|Blm|12144|Bloom syndrome, RecQ helicase-like
mm9_v1_chr14_-_65515555_65515693	0.10017	PAX4.p2	BC002212|Hmbox1|219150|homeobox containing 1
mm9_v1_chr10_+_79578849_79578946	0.0995859	PAX4.p2	AF129870|Stk11|20869|serine/threonine kinase 11
mm9_v1_chr2_-_148263617_148263709	0.0991411	PAX4.p2	AK161779|Cd93|17064|CD93 antigen	AK150385|Cd93|17064|CD93 antigen
mm9_v1_chr2_-_127614580_127614637	0.0989336	PAX4.p2	AF127180|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	AF176210|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	AJ243223|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	BC118953|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	FJ767895|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	FJ767896|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	FJ767897|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	FJ767898|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	NM_016902|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	EF174553|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	EF174554|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)	AK159627|Nphp1|53885|nephronophthisis 1 (juvenile) homolog (human)
mm9_v1_chr7_+_130267398_130267398	0.0984822	PAX4.p2	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr4_+_155336386_155336439	0.0981403	PAX4.p2	AK004116|Fam132a|67389|family with sequence similarity 132, member A	NM_026125|Fam132a|67389|family with sequence similarity 132, member A	AK007335|Fam132a|67389|family with sequence similarity 132, member A	AK002876|Fam132a|67389|family with sequence similarity 132, member A
mm9_v1_chr16_+_45094214_45094287	0.0973574	PAX4.p2	AB075019|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr7_-_28459566_28459642	0.0968991	PAX4.p2	AK053830|Map3k10|269881|mitogen-activated protein kinase kinase kinase 10	NM_001081292|Map3k10|269881|mitogen-activated protein kinase kinase kinase 10
mm9_v1_chr1_+_101669228_101669341	0.0966434	PAX4.p2	NM_172851|Cntnap5b|241175|contactin associated protein-like 5B
mm9_v1_chr3_+_30691760_30691806	0.0956712	PAX4.p2	BC017162|Sec62|69276|SEC62 homolog (S. cerevisiae)	NM_027016|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr17_-_56724005_56724033	0.0954306	PAX4.p2	NM_001029979|Safb2|224902|scaffold attachment factor B2
mm9_v1_chr15_-_85642066_85642146	0.0953355	PAX4.p2	BC025858|2210021J22Rik|72355|RIKEN cDNA 2210021J22 gene	NM_001164625|2210021J22Rik|72355|RIKEN cDNA 2210021J22 gene	NM_001164626|2210021J22Rik|72355|RIKEN cDNA 2210021J22 gene	NM_197998|2210021J22Rik|72355|RIKEN cDNA 2210021J22 gene
mm9_v1_chr18_-_52689185_52689268	0.0952843	PAX4.p2	AK166279|Lox|16948|lysyl oxidase	AK159682|Lox|16948|lysyl oxidase	AK159368|Lox|16948|lysyl oxidase	M65142|Lox|16948|lysyl oxidase	AK159796|Lox|16948|lysyl oxidase	AK160096|Lox|16948|lysyl oxidase	AK159241|Lox|16948|lysyl oxidase
mm9_v1_chr1_+_194014650_194014665	0.0947063	PAX4.p2	AK147461|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr10_+_69388242_69388279	0.0946834	PAX4.p2	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr7_-_135034440_135034483	0.0943774	PAX4.p2	AK220244|Prss53|330657|protease, serine, 53	BC147509|Prss53|330657|protease, serine, 53	BC151010|Prss53|330657|protease, serine, 53	BC151017|Prss53|330657|protease, serine, 53	BC172059|Prss53|330657|protease, serine, 53	NM_001081268|Prss53|330657|protease, serine, 53
mm9_v1_chr8_-_26864848_26864892	0.0939221	PAX4.p2	AK079311|Ddhd2|72108|DDHD domain containing 2	AK035532|Ddhd2|72108|DDHD domain containing 2
mm9_v1_chr7_+_134944168_134944205	0.0939134	PAX4.p2	BC006822|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC018525|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC132605|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC138589|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AF277718|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr12_-_55796770_55796822	0.0937854	PAX4.p2	AY882557|Eapp|66266|E2F-associated phosphoprotein	AK007442|Eapp|66266|E2F-associated phosphoprotein	AK012800|Eapp|66266|E2F-associated phosphoprotein
mm9_v1_chr1_+_194014677_194014800	0.0936216	PAX4.p2	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr5_+_120961136_120961273	0.093384	PAX4.p2	AF261233|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_001177594|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_001177595|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_133221|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	AK157173|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	AK028537|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	BC043689|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
mm9_v1_chr5_+_139899132_139899277	0.0933018	PAX4.p2	AK030375|Gpr30|76854|G protein-coupled receptor 30	NM_029771|Gpr30|76854|G protein-coupled receptor 30	AK018203|Gpr30|76854|G protein-coupled receptor 30	BC138598|Gpr30|76854|G protein-coupled receptor 30	BC138616|Gpr30|76854|G protein-coupled receptor 30
mm9_v1_chr13_+_108834624_108834692	0.0929614	PAX4.p2	BC069965|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	AK088529|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	AK139507|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	NM_001048250|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene
mm9_v1_chr2_+_34629622_34629806	0.0923125	PAX4.p2	AK160592|Hspa5|14828|heat shock protein 5	AK213790|Hspa5|14828|heat shock protein 5
mm9_v1_chr17_+_35189798_35189804	0.0921221	PAX4.p2	
mm9_v1_chr9_+_106124928_106124996	0.0921086	PAX4.p2	AB045181|Tlr9|81897|toll-like receptor 9	NM_031178|Tlr9|81897|toll-like receptor 9	AF314224|Tlr9|81897|toll-like receptor 9	AF348140|Tlr9|81897|toll-like receptor 9
mm9_v1_chr7_+_95578782_95579025	0.0920781	PAX4.p2	AK054253|Rab38|72433|RAB38, member of RAS oncogene family	NM_028238|Rab38|72433|RAB38, member of RAS oncogene family	AK165682|Rab38|72433|RAB38, member of RAS oncogene family	AK044783|Rab38|72433|RAB38, member of RAS oncogene family	AK009296|Rab38|72433|RAB38, member of RAS oncogene family	AY062237|Rab38|72433|RAB38, member of RAS oncogene family	BC089578|Rab38|72433|RAB38, member of RAS oncogene family	AB232634|Rab38|72433|RAB38, member of RAS oncogene family	AK198599|Rab38|72433|RAB38, member of RAS oncogene family
mm9_v1_chr11_-_100007218_100007243	0.091874	PAX4.p2	BC034561|Krt19|16669|keratin 19	M28698|Krt19|16669|keratin 19	AB472075|Krt19|16669|keratin 19	BC085304|Krt19|16669|keratin 19	NM_008471|Krt19|16669|keratin 19
mm9_v1_chr3_-_84063605_84063646	0.0918299	PAX4.p2	AK147275|Trim2|80890|tripartite motif-containing 2	AK079415|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr2_-_50152180_50152256	0.0914144	PAX4.p2	BC002253|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	NM_133839|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm9_v1_chr11_+_97702591_97702632	0.0912342	PAX4.p2	AK081899|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK140210|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK042827|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK031146|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK035650|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK018341|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK080808|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK082773|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr4_-_141640159_141640218	0.0908649	PAX4.p2	AK164026|Tmem51|214359|transmembrane protein 51	AK077758|Tmem51|214359|transmembrane protein 51	NM_145402|Tmem51|214359|transmembrane protein 51
mm9_v1_chr6_+_38542722_38542769	0.0907178	PAX4.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr2_-_75816235_75816356	0.0906647	PAX4.p2	NM_001081228|Ttc30a2|620631|tetratricopeptide repeat domain 30A2	BC157934|Ttc30a2|620631|tetratricopeptide repeat domain 30A2	BC172090|Ttc30a2|620631|tetratricopeptide repeat domain 30A2	BC158130|Ttc30a2|620631|tetratricopeptide repeat domain 30A2
mm9_v1_chr17_+_47027553_47027615	0.0901189	PAX4.p2	NM_178385|Tbcc|72726|tubulin-specific chaperone C
mm9_v1_chr2_+_84667174_84667190	0.0888751	PAX4.p2	AK008088|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	NM_013899|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)
mm9_v1_chr7_-_149562239_149562649	0.0886529	PAX4.p2	AK180828|Ctsd|13033|cathepsin D	AK183526|Ctsd|13033|cathepsin D
mm9_v1_chr8_+_87561055_87561132	0.0879136	PAX4.p2	NM_001122843|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	BC003275|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr1_+_133763777_133763883	0.0877724	PAX4.p2	AK137928|Rab7l1|226422|RAB7, member RAS oncogene family-like 1	NM_144875|Rab7l1|226422|RAB7, member RAS oncogene family-like 1	BC016133|Rab7l1|226422|RAB7, member RAS oncogene family-like 1
mm9_v1_chr18_-_39650291_39650365	0.087076	PAX4.p2	BC016462|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK155200|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chrX_-_150130711_150130822	0.086802	PAX4.p2	AK046557|Kctd12b|207474|potassium channel tetramerisation domain containing 12b	AK050097|Kctd12b|207474|potassium channel tetramerisation domain containing 12b	AK046708|Kctd12b|207474|potassium channel tetramerisation domain containing 12b	AK085035|Kctd12b|207474|potassium channel tetramerisation domain containing 12b	BC064459|Kctd12b|207474|potassium channel tetramerisation domain containing 12b	NM_175429|Kctd12b|207474|potassium channel tetramerisation domain containing 12b
mm9_v1_chr8_+_125927015_125927184	0.0861709	PAX4.p2	AK007744|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK190180|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK219335|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr7_-_117987922_117987942	0.0861307	PAX4.p2	AK006791|Rnf141|67150|ring finger protein 141
mm9_v1_chr13_+_5860701_5860744	0.0856202	PAX4.p2	NM_011803|Klf6|23849|Kruppel-like factor 6	AY027436|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr8_-_112692071_112692144	0.0853618	PAX4.p2	BC017646|Calb2|12308|calbindin 2	NM_007586|Calb2|12308|calbindin 2	AK032171|Calb2|12308|calbindin 2
mm9_v1_chr9_+_106350967_106351018	0.0845767	PAX4.p2	NM_029631|Abhd14b|76491|abhydrolase domain containing 14b	BC019410|Abhd14b|76491|abhydrolase domain containing 14b	AK007469|Abhd14b|76491|abhydrolase domain containing 14b
mm9_v1_chr13_+_23625779_23625779	0.084537	PAX4.p2	BC125011|Hist1h2af|319173|histone cluster 1, H2af	NM_175661|Hist1h2af|319173|histone cluster 1, H2af
mm9_v1_chr6_-_35489875_35489887	0.0845025	PAX4.p2	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr13_+_44826700_44826834	0.0842608	PAX4.p2	BC050129|Jarid2|16468|jumonji, AT rich interactive domain 2	AK044888|Jarid2|16468|jumonji, AT rich interactive domain 2	BC051010|Jarid2|16468|jumonji, AT rich interactive domain 2	BC026056|Jarid2|16468|jumonji, AT rich interactive domain 2	AK045214|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr13_+_49639847_49640001	0.0840575	PAX4.p2	AK014504|Aspn|66695|asporin	AK021386|Aspn|66695|asporin	AK085920|Aspn|66695|asporin	BC034888|Aspn|66695|asporin	BC145904|Aspn|66695|asporin	BC145930|Aspn|66695|asporin
mm9_v1_chr2_-_25877064_25877129	0.0839728	PAX4.p2	AK157857|Ubac1|98766|ubiquitin associated domain containing 1
mm9_v1_chr7_-_96487105_96487235	0.0839241	PAX4.p2	AK028401|Tmem135|72759|transmembrane protein 135	AY040841|Tmem135|72759|transmembrane protein 135	BC050931|Tmem135|72759|transmembrane protein 135	AK153175|Tmem135|72759|transmembrane protein 135
mm9_v1_chr10_-_76721815_76721967	0.0828179	PAX4.p2	AK164976|Gm10941|100169878|predicted gene 10941	AK132904|Gm10941|100169878|predicted gene 10941
mm9_v1_chr5_-_123237776_123238028	0.0819481	PAX4.p2	
mm9_v1_chr2_-_90389238_90389244	0.0817123	PAX4.p2	AK020679|9630014C11Rik|78570|RIKEN cDNA 9630014C11 gene
mm9_v1_chr17_-_35309483_35309575	0.0816729	PAX4.p2	CT010265|Aif1|11629|allograft inflammatory factor 1	CT010385|Aif1|11629|allograft inflammatory factor 1	AB013745|Aif1|11629|allograft inflammatory factor 1	AF074959|Aif1|11629|allograft inflammatory factor 1	D86382|Aif1|11629|allograft inflammatory factor 1
mm9_v1_chr2_-_72818985_72819034	0.0816046	PAX4.p2	AK081759|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr11_-_3814666_3814666	0.0811389	PAX4.p2	AK039786|Slc35e4|103710|solute carrier family 35, member E4	NM_153142|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr3_-_135354151_135354490	0.0807072	PAX4.p2	M57999|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr2_-_102741661_102741678	0.0806743	PAX4.p2	AK045226|Cd44|12505|CD44 antigen
mm9_v1_chr15_+_76157816_76157892	0.0802626	PAX4.p2	AK089890|Exosc4|109075|exosome component 4	NM_175399|Exosc4|109075|exosome component 4	AK167629|Exosc4|109075|exosome component 4	AK083308|Exosc4|109075|exosome component 4	BC012277|Exosc4|109075|exosome component 4
mm9_v1_chr5_+_73684087_73684090	0.0800026	PAX4.p2	AK082781|Ociad1|68095|OCIA domain containing 1
mm9_v1_chr19_+_8913965_8913992	0.079711	PAX4.p2	AF069954|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr7_+_19791687_19791691	0.079583	PAX4.p2	AK215580|Eml2|72205|echinoderm microtubule associated protein like 2
mm9_v1_chr10_+_79579271_79579362	0.0790884	PAX4.p2	BC052379|Stk11|20869|serine/threonine kinase 11	NM_011492|Stk11|20869|serine/threonine kinase 11	AB015801|Stk11|20869|serine/threonine kinase 11	AF145287|Stk11|20869|serine/threonine kinase 11	AF151711|Stk11|20869|serine/threonine kinase 11	EU730638|Stk11|20869|serine/threonine kinase 11
mm9_v1_chr14_+_70167278_70167338	0.0785555	PAX4.p2	AK050753|Tnfrsf10b|21933|tumor necrosis factor receptor superfamily, member 10b	NM_020275|Tnfrsf10b|21933|tumor necrosis factor receptor superfamily, member 10b	AK080069|Tnfrsf10b|21933|tumor necrosis factor receptor superfamily, member 10b	AK145730|Tnfrsf10b|21933|tumor necrosis factor receptor superfamily, member 10b	AK154993|Tnfrsf10b|21933|tumor necrosis factor receptor superfamily, member 10b	BC065141|Tnfrsf10b|21933|tumor necrosis factor receptor superfamily, member 10b	AB031081|Tnfrsf10b|21933|tumor necrosis factor receptor superfamily, member 10b
mm9_v1_chr11_-_74537778_74537876	0.0784448	PAX4.p2	L25108|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK147309|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK147207|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	BC014831|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	BC099462|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK147229|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK168960|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	BC026141|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK147533|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK167448|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	BC046989|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK147515|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK144908|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK147237|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK167824|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr3_-_120966206_120966262	0.0784092	PAX4.p2	BC040365|Tmem56|99887|transmembrane protein 56	NM_178936|Tmem56|99887|transmembrane protein 56	AK149544|Tmem56|99887|transmembrane protein 56
mm9_v1_chr12_-_88541249_88541271	0.0779673	PAX4.p2	BC150860|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr16_+_23146631_23146693	0.0768711	PAX4.p2	AK041214|Adipoq|11450|adiponectin, C1Q and collagen domain containing	AX767957|Adipoq|11450|adiponectin, C1Q and collagen domain containing	U37222|Adipoq|11450|adiponectin, C1Q and collagen domain containing	AK003138|Adipoq|11450|adiponectin, C1Q and collagen domain containing	BC028770|Adipoq|11450|adiponectin, C1Q and collagen domain containing
mm9_v1_chr4_+_62141084_62141100	0.0764952	PAX4.p2	BC139079|Bspry|192120|B-box and SPRY domain containing	BC139080|Bspry|192120|B-box and SPRY domain containing	BC145535|Bspry|192120|B-box and SPRY domain containing	AK035588|Bspry|192120|B-box and SPRY domain containing	AK160930|Bspry|192120|B-box and SPRY domain containing	AJ276690|Bspry|192120|B-box and SPRY domain containing	NM_138653|Bspry|192120|B-box and SPRY domain containing
mm9_v1_chr7_+_135110992_135111067	0.0761689	PAX4.p2	NM_139149|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK132141|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK134491|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK146198|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK149118|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK145582|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK032815|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK038226|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK139960|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK172554|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC058247|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC011078|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC040827|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AF224264|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)
mm9_v1_chr5_+_20692068_20692169	0.0761536	PAX4.p2	AK137494|Pion|212167|pigeon homolog (Drosophila)	BC043137|Pion|212167|pigeon homolog (Drosophila)	BC059054|Pion|212167|pigeon homolog (Drosophila)	NM_175437|Pion|212167|pigeon homolog (Drosophila)	AK033694|Pion|212167|pigeon homolog (Drosophila)	AK039306|Pion|212167|pigeon homolog (Drosophila)	AK080244|Pion|212167|pigeon homolog (Drosophila)	AK170515|Pion|212167|pigeon homolog (Drosophila)	BC022737|Pion|212167|pigeon homolog (Drosophila)	BC144952|Pion|212167|pigeon homolog (Drosophila)	BC144953|Pion|212167|pigeon homolog (Drosophila)
mm9_v1_chr9_-_58097422_58097566	0.0761104	PAX4.p2	AK193824|Pml|18854|promyelocytic leukemia	AK156054|Pml|18854|promyelocytic leukemia	AK157346|Pml|18854|promyelocytic leukemia	AK156279|Pml|18854|promyelocytic leukemia	U33626|Pml|18854|promyelocytic leukemia	AK156175|Pml|18854|promyelocytic leukemia	BC020990|Pml|18854|promyelocytic leukemia	AK137538|Pml|18854|promyelocytic leukemia	AK157035|Pml|18854|promyelocytic leukemia
mm9_v1_chr11_+_29640992_29641009	0.0747416	PAX4.p2	AK206171|Rtn4|68585|reticulon 4
mm9_v1_chr7_-_134170532_134170710	0.0745054	PAX4.p2	BC004758|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)
mm9_v1_chr8_-_42300504_42300520	0.0734851	PAX4.p2	AF478470|Fgl1|234199|fibrinogen-like protein 1	AK083397|Fgl1|234199|fibrinogen-like protein 1	NM_145594|Fgl1|234199|fibrinogen-like protein 1
mm9_v1_chr1_+_89110855_89110976	0.0733007	PAX4.p2	BC028903|Eif4e2|26987|eukaryotic translation initiation factor 4E member 2
mm9_v1_chr19_+_55390850_55390853	0.0730273	PAX4.p2	AK004751|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
mm9_v1_chr2_+_84776817_84776846	0.0727551	PAX4.p2	AF188622|Slc43a3|58207|solute carrier family 43, member 3
mm9_v1_chr8_-_112132522_112132608	0.0721205	PAX4.p2	AK013102|Dhodh|56749|dihydroorotate dehydrogenase	BC027829|Dhodh|56749|dihydroorotate dehydrogenase	BC045206|Dhodh|56749|dihydroorotate dehydrogenase	NM_020046|Dhodh|56749|dihydroorotate dehydrogenase
mm9_v1_chr9_+_4383536_4383536	0.0718886	PAX4.p2	AK180204|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	BC014729|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	NM_145609|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene
mm9_v1_chr5_+_13399301_13399308	0.0715644	PAX4.p2	D85028|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	NM_009152|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr1_-_173177238_173177241	0.0714951	PAX4.p2	AK167016|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr4_+_59048027_59048124	0.0709904	PAX4.p2	NM_025277|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	AK014158|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC023670|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	AK003187|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC055434|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10	BC061090|Gng10|14700|guanine nucleotide binding protein (G protein), gamma 10
mm9_v1_chr7_+_116847191_116847288	0.0706031	PAX4.p2	AK163012|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	AK155010|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	AK086219|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	AK159903|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	NM_020616|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene
mm9_v1_chr8_+_28196312_28196323	0.0704847	PAX4.p2	AF378759|Gpr124|78560|G protein-coupled receptor 124	NM_054044|Gpr124|78560|G protein-coupled receptor 124	BC138451|Gpr124|78560|G protein-coupled receptor 124	BC138452|Gpr124|78560|G protein-coupled receptor 124
mm9_v1_chr3_+_114606995_114607339	0.070308	PAX4.p2	AK049612|Olfm3|229759|olfactomedin 3	AK044605|Olfm3|229759|olfactomedin 3	AK045482|Olfm3|229759|olfactomedin 3	AK038569|Olfm3|229759|olfactomedin 3	AK079315|Olfm3|229759|olfactomedin 3	AK044325|Olfm3|229759|olfactomedin 3	AK137414|Olfm3|229759|olfactomedin 3	AF442825|Olfm3|229759|olfactomedin 3	NM_153458|Olfm3|229759|olfactomedin 3	BC112422|Olfm3|229759|olfactomedin 3	BC113129|Olfm3|229759|olfactomedin 3
mm9_v1_chr10_+_97028134_97028280	0.0702953	PAX4.p2	NM_008524|Lum|17022|lumican
mm9_v1_chr17_+_26813327_26813409	0.0699092	PAX4.p2	AK017760|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	NM_025272|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK159669|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK134836|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK007610|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK008464|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK168015|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	BC024733|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK013229|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK030335|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E
mm9_v1_chr2_-_151458256_151458277	0.0690908	PAX4.p2	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr17_-_65890082_65890121	0.0687998	PAX4.p2	BC150885|Tmem232|381107|transmembrane protein 232	BC172032|Tmem232|381107|transmembrane protein 232	AF338469|Tmem232|381107|transmembrane protein 232	NM_001008973|Tmem232|381107|transmembrane protein 232
mm9_v1_chr5_-_138125903_138125907	0.0684848	PAX4.p2	AK155221|Agfg2|231801|ArfGAP with FG repeats 2
mm9_v1_chr6_+_3954225_3954243	0.068273	PAX4.p2	AK002765|Gng11|66066|guanine nucleotide binding protein (G protein), gamma 11
mm9_v1_chr2_-_71205587_71205679	0.0682314	PAX4.p2	BC013845|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	BC060505|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	AK019150|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	AK083156|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	NM_172436|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	AK147948|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	AK030595|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	AK144958|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	AK208043|Slc25a12|78830|solute carrier family 25 (mitochondrial carrier, Aralar), member 12
mm9_v1_chr18_-_35658485_35658600	0.0679837	PAX4.p2	BC028488|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AJ297884|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AK170415|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016466|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016119|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	NM_030749|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm9_v1_chr17_-_46841807_46841825	0.0677824	PAX4.p2	AF316616|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr8_+_80737195_80737240	0.0666895	PAX4.p2	AK006580|Ttc29|73301|tetratricopeptide repeat domain 29	BC048386|Ttc29|73301|tetratricopeptide repeat domain 29	NM_183096|Ttc29|73301|tetratricopeptide repeat domain 29
mm9_v1_chr2_-_181327165_181327210	0.0660197	PAX4.p2	AK129308|Znf512b|269401|zinc finger protein 512B	NM_001164597|Znf512b|269401|zinc finger protein 512B
mm9_v1_chr8_+_97366546_97366639	0.0659447	PAX4.p2	AK200178|Coq9|67914|coenzyme Q9 homolog (yeast)
mm9_v1_chr2_+_167340686_167340879	0.0659118	PAX4.p2	BC019989|Rnf114|81018|ring finger protein 114	AK216194|Rnf114|81018|ring finger protein 114	AK003584|Rnf114|81018|ring finger protein 114
mm9_v1_chr4_+_98213324_98213424	0.0649388	PAX4.p2	NM_001005787|Inadl|12695|InaD-like (Drosophila)	NM_007704|Inadl|12695|InaD-like (Drosophila)	AF060539|Inadl|12695|InaD-like (Drosophila)
mm9_v1_chr12_+_103521406_103521481	0.0638358	PAX4.p2	AK166196|Rin3|217835|Ras and Rab interactor 3	AK171301|Rin3|217835|Ras and Rab interactor 3	AK154522|Rin3|217835|Ras and Rab interactor 3	AK171311|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr1_-_173152548_173152594	0.0636163	PAX4.p2	AK012264|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr1_-_170085798_170085873	0.0632615	PAX4.p2	AK080184|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK032161|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK043495|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK085198|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr11_-_45768992_45769003	0.0624996	PAX4.p2	BC115560|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	BC115561|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	AK010876|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	NM_001080969|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm9_v1_chr1_-_169323901_169323998	0.0624299	PAX4.p2	AK135742|Mgst3|66447|microsomal glutathione S-transferase 3	AK003309|Mgst3|66447|microsomal glutathione S-transferase 3	AK008533|Mgst3|66447|microsomal glutathione S-transferase 3	AK003476|Mgst3|66447|microsomal glutathione S-transferase 3	AK003492|Mgst3|66447|microsomal glutathione S-transferase 3	AK003246|Mgst3|66447|microsomal glutathione S-transferase 3	NM_025569|Mgst3|66447|microsomal glutathione S-transferase 3
mm9_v1_chr4_-_135429715_135429738	0.0623297	PAX4.p2	BC006598|Pnrc2|52830|proline-rich nuclear receptor coactivator 2	AK011192|Pnrc2|52830|proline-rich nuclear receptor coactivator 2
mm9_v1_chr4_-_58566362_58566472	0.0617407	PAX4.p2	NM_010336|Lpar1|14745|lysophosphatidic acid receptor 1	U70622|Lpar1|14745|lysophosphatidic acid receptor 1
mm9_v1_chr11_-_29925939_29926032	0.061679	PAX4.p2	AK049034|Eml6|237711|echinoderm microtubule associated protein like 6	NM_146016|Eml6|237711|echinoderm microtubule associated protein like 6
mm9_v1_chr16_-_11909420_11909546	0.0614196	PAX4.p2	BC025476|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029379|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK032288|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK041329|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	BC034347|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK133977|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK080876|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK049721|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK134718|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	NM_146067|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029442|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1
mm9_v1_chr7_+_134890288_134890288	0.0613935	PAX4.p2	BC059812|Fbxl19|233902|F-box and leucine-rich repeat protein 19	NM_172748|Fbxl19|233902|F-box and leucine-rich repeat protein 19
mm9_v1_chr7_+_63185457_63185630	0.0612227	PAX4.p2	AK195390|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK052509|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr15_+_76779190_76779208	0.0610379	PAX4.p2	BC091734|1110038F14Rik|117171|RIKEN cDNA 1110038F14 gene
mm9_v1_chr19_+_21354915_21354945	0.0609448	PAX4.p2	AK185148|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr18_+_82754829_82754843	0.0605806	PAX4.p2	AK193989|Mbp|17196|myelin basic protein	AK198113|Mbp|17196|myelin basic protein	AK200233|Mbp|17196|myelin basic protein	AK200632|Mbp|17196|myelin basic protein	AK201435|Mbp|17196|myelin basic protein	AK201834|Mbp|17196|myelin basic protein	AK202354|Mbp|17196|myelin basic protein	AK209511|Mbp|17196|myelin basic protein
mm9_v1_chr10_+_127795461_127795537	0.0605778	PAX4.p2	DQ403125|Cs|12974|citrate synthase	AK012104|Cs|12974|citrate synthase
mm9_v1_chr8_+_97197548_97197604	0.0604871	PAX4.p2	AK209782|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr1_-_163806710_163806814	0.0601955	PAX4.p2	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr1_-_173152634_173152646	0.0601591	PAX4.p2	AK028388|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)	NM_001037170|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr2_+_18598644_18598801	0.0599305	PAX4.p2	M64279|Bmi1|12151|Bmi1 polycomb ring finger oncogene	NM_007552|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr4_+_126698578_126698591	0.058976	PAX4.p2	BC080848|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	BC089305|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr8_-_26864721_26864754	0.0583945	PAX4.p2	AK008529|Ddhd2|72108|DDHD domain containing 2	AK196094|Ddhd2|72108|DDHD domain containing 2	NM_028102|Ddhd2|72108|DDHD domain containing 2	AK039979|Ddhd2|72108|DDHD domain containing 2
mm9_v1_chr19_-_10175969_10175986	0.0581421	PAX4.p2	BC057189|Fads2|56473|fatty acid desaturase 2
mm9_v1_chr2_+_84667196_84667249	0.0581272	PAX4.p2	AF150090|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	BC031448|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	AK013546|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)
mm9_v1_chr11_-_34647016_34647097	0.0579757	PAX4.p2	AK139553|Ccdc99|70385|coiled-coil domain containing 99	AK163303|Ccdc99|70385|coiled-coil domain containing 99
mm9_v1_chr3_-_35899453_35899599	0.0576019	PAX4.p2	AK178493|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK168589|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AF310338|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK032203|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK007782|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	BC021382|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK031072|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	NM_023644|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
mm9_v1_chr11_-_6420904_6420913	0.0575774	PAX4.p2	BC113755|Myo1g|246177|myosin IG	BC113954|Myo1g|246177|myosin IG	AK042033|Myo1g|246177|myosin IG
mm9_v1_chr11_+_81859212_81859265	0.0574622	PAX4.p2	NM_013654|Ccl7|20306|chemokine (C-C motif) ligand 7	AK078827|Ccl7|20306|chemokine (C-C motif) ligand 7	BC061126|Ccl7|20306|chemokine (C-C motif) ligand 7	S71251|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128193|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128194|Ccl7|20306|chemokine (C-C motif) ligand 7	L04694|Ccl7|20306|chemokine (C-C motif) ligand 7	S50588|Ccl7|20306|chemokine (C-C motif) ligand 7	Z12297|Ccl7|20306|chemokine (C-C motif) ligand 7
mm9_v1_chr3_+_129539656_129539716	0.05726	PAX4.p2	NM_007686|Cfi|12630|complement component factor i	U47810|Cfi|12630|complement component factor i	BC150751|Cfi|12630|complement component factor i
mm9_v1_chr14_-_77436710_77436714	0.0571372	PAX4.p2	AK053693|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene
mm9_v1_chr3_+_96962930_96963018	0.0570764	PAX4.p2	BC047276|Acp6|66659|acid phosphatase 6, lysophosphatidic	AK089736|Acp6|66659|acid phosphatase 6, lysophosphatidic
mm9_v1_chr3_-_10440061_10440125	0.0570159	PAX4.p2	BC070431|Snx16|74718|sorting nexin 16	AK032055|Snx16|74718|sorting nexin 16	AK015872|Snx16|74718|sorting nexin 16	AK043975|Snx16|74718|sorting nexin 16	AK166422|Snx16|74718|sorting nexin 16	NM_001127191|Snx16|74718|sorting nexin 16	NM_029068|Snx16|74718|sorting nexin 16
mm9_v1_chr14_+_75576599_75576717	0.0566679	PAX4.p2	AK088202|Lcp1|18826|lymphocyte cytosolic protein 1	U82610|Lcp1|18826|lymphocyte cytosolic protein 1	AK169728|Lcp1|18826|lymphocyte cytosolic protein 1	AK171751|Lcp1|18826|lymphocyte cytosolic protein 1	AK030996|Lcp1|18826|lymphocyte cytosolic protein 1	AK169972|Lcp1|18826|lymphocyte cytosolic protein 1	AK167261|Lcp1|18826|lymphocyte cytosolic protein 1	AK153061|Lcp1|18826|lymphocyte cytosolic protein 1	AK153082|Lcp1|18826|lymphocyte cytosolic protein 1	AK151542|Lcp1|18826|lymphocyte cytosolic protein 1	AK089922|Lcp1|18826|lymphocyte cytosolic protein 1	AK151720|Lcp1|18826|lymphocyte cytosolic protein 1	AK152668|Lcp1|18826|lymphocyte cytosolic protein 1	AK152891|Lcp1|18826|lymphocyte cytosolic protein 1	AK152902|Lcp1|18826|lymphocyte cytosolic protein 1	AK168062|Lcp1|18826|lymphocyte cytosolic protein 1	AK153206|Lcp1|18826|lymphocyte cytosolic protein 1	AK169833|Lcp1|18826|lymphocyte cytosolic protein 1	AK030806|Lcp1|18826|lymphocyte cytosolic protein 1	AK151155|Lcp1|18826|lymphocyte cytosolic protein 1
mm9_v1_chr8_-_37633134_37633136	0.056655	PAX4.p2	AK086364|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr8_+_74120004_74120094	0.0565193	PAX4.p2	
mm9_v1_chr9_+_124036265_124036352	0.0559198	PAX4.p2	AK154595|Ccr5|12774|chemokine (C-C motif) receptor 5	NM_009917|Ccr5|12774|chemokine (C-C motif) receptor 5	AK141906|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155632|Ccr5|12774|chemokine (C-C motif) receptor 5	AK170303|Ccr5|12774|chemokine (C-C motif) receptor 5	D83648|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155628|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155867|Ccr5|12774|chemokine (C-C motif) receptor 5	X94151|Ccr5|12774|chemokine (C-C motif) receptor 5	BC105643|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103574|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103586|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103587|Ccr5|12774|chemokine (C-C motif) receptor 5	U47036|Ccr5|12774|chemokine (C-C motif) receptor 5
mm9_v1_chr17_-_33054270_33054330	0.0558411	PAX4.p2	AB037541|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14	AK005007|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14	AK018676|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14
mm9_v1_chr4_-_140991985_140992019	0.0557945	PAX4.p2	BC147054|Gm694|277744|predicted gene 694	BC147055|Gm694|277744|predicted gene 694	AK145525|Gm694|277744|predicted gene 694	NM_001033374|Gm694|277744|predicted gene 694
mm9_v1_chr18_-_39649411_39649429	0.0556885	PAX4.p2	BC008154|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr8_-_73796243_73796274	0.0553595	PAX4.p2	BC003935|Haus8|76478|4HAUS augmin-like complex, subunit 8	AK010398|Haus8|76478|4HAUS augmin-like complex, subunit 8
mm9_v1_chr11_+_68781623_68781690	0.0550936	PAX4.p2	AK171131|Slc25a35|71998|solute carrier family 25, member 35	AK007453|Slc25a35|71998|solute carrier family 25, member 35	NM_028048|Slc25a35|71998|solute carrier family 25, member 35	AK157873|Slc25a35|71998|solute carrier family 25, member 35	AK035739|Slc25a35|71998|solute carrier family 25, member 35	BC019996|Slc25a35|71998|solute carrier family 25, member 35
mm9_v1_chr1_-_33871218_33871259	0.0550091	PAX4.p2	BC062154|Zfp451|98403|zinc finger protein 451
mm9_v1_chr7_+_133572567_133572631	0.0549351	PAX4.p2	AK089938|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK144836|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK157832|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2
mm9_v1_chr11_+_75439670_75439831	0.0546048	PAX4.p2	AK218843|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK214842|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr13_-_74460431_74460546	0.0543481	PAX4.p2	
mm9_v1_chr9_+_114624257_114624316	0.0538175	PAX4.p2	AK205150|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK217382|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chr4_+_107040388_107040388	0.0529932	PAX4.p2	AK144734|Tmem48|72787|transmembrane protein 48	NM_028355|Tmem48|72787|transmembrane protein 48
mm9_v1_chr13_-_73465894_73465936	0.0520715	PAX4.p2	AK147147|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	BC076501|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	BC059730|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	BC086933|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6	NM_010888|Ndufs6|407785|NADH dehydrogenase (ubiquinone) Fe-S protein 6
mm9_v1_chr4_+_124743933_124743973	0.0520399	PAX4.p2	AK010794|Snip1|76793|Smad nuclear interacting protein 1	AK040571|Snip1|76793|Smad nuclear interacting protein 1	AK049254|Snip1|76793|Smad nuclear interacting protein 1	AK049318|Snip1|76793|Smad nuclear interacting protein 1	AK143801|Snip1|76793|Smad nuclear interacting protein 1	NM_175246|Snip1|76793|Smad nuclear interacting protein 1	AK078163|Snip1|76793|Smad nuclear interacting protein 1	AK132768|Snip1|76793|Smad nuclear interacting protein 1	BC064067|Snip1|76793|Smad nuclear interacting protein 1
mm9_v1_chrX_-_35793335_35793510	0.0514655	PAX4.p2	AK184164|Lamp2|16784|lysosomal-associated membrane protein 2	AK217258|Lamp2|16784|lysosomal-associated membrane protein 2	AK128946|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr11_-_102178006_102178018	0.0513482	PAX4.p2	BC024622|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr13_+_49600158_49600323	0.0511947	PAX4.p2	AK040995|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC089559|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	NM_001012324|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK134746|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK163501|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC056468|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC065151|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK038812|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific
mm9_v1_chr7_-_125263314_125263384	0.0511326	PAX4.p2	AK004228|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK012904|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK005514|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr15_-_34608600_34608626	0.0508181	PAX4.p2	AK038556|Nipal2|223473|NIPA-like domain containing 2	BC058207|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr8_+_97190597_97190763	0.050584	PAX4.p2	BC002131|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	NM_024191|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK149620|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK161325|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK018229|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	CT010168|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr2_+_71711274_71711402	0.0504448	PAX4.p2	AK046805|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK153649|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	NM_172665|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK163553|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC027196|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK028017|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK085215|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC025480|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1
mm9_v1_chr11_+_75401554_75401692	0.0502987	PAX4.p2	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr5_+_64551449_64551546	0.0497179	PAX4.p2	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr11_+_83567248_83567345	0.0495904	PAX4.p2	AK050370|Heatr6|217026|HEAT repeat containing 6	AK149059|Heatr6|217026|HEAT repeat containing 6
mm9_v1_chr7_+_97535490_97535508	0.0492922	PAX4.p2	AK051653|Sytl2|83671|synaptotagmin-like 2	NM_001040087|Sytl2|83671|synaptotagmin-like 2	NM_001040088|Sytl2|83671|synaptotagmin-like 2	AK162921|Sytl2|83671|synaptotagmin-like 2	AK027924|Sytl2|83671|synaptotagmin-like 2
mm9_v1_chr15_-_75911299_75911319	0.0489977	PAX4.p2	BC010601|Puf60|67959|poly-U binding splicing factor 60	NM_001164600|Puf60|67959|poly-U binding splicing factor 60	AK013342|Puf60|67959|poly-U binding splicing factor 60	AK012434|Puf60|67959|poly-U binding splicing factor 60
mm9_v1_chr1_-_55044032_55044295	0.0485028	PAX4.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr6_-_39507815_39507904	0.0481143	PAX4.p2	AK048041|Dennd2a|209773|DENN/MADD domain containing 2A	AK081176|Dennd2a|209773|DENN/MADD domain containing 2A	NM_172477|Dennd2a|209773|DENN/MADD domain containing 2A
mm9_v1_chr9_+_72286335_72286422	0.0476311	PAX4.p2	NM_008613|Mns1|17427|meiosis-specific nuclear structural protein 1	AK132772|Mns1|17427|meiosis-specific nuclear structural protein 1	AK013048|Mns1|17427|meiosis-specific nuclear structural protein 1	BC046624|Mns1|17427|meiosis-specific nuclear structural protein 1
mm9_v1_chr1_-_84931657_84931708	0.0473689	PAX4.p2	BC023456|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14	NM_027921|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14	AK049846|Slc16a14|71781|solute carrier family 16 (monocarboxylic acid transporters), member 14
mm9_v1_chr11_+_49064013_49064076	0.0470834	PAX4.p2	AK155322|Mgat1|17308|mannoside acetylglucosaminyltransferase 1	AK004760|Mgat1|17308|mannoside acetylglucosaminyltransferase 1	NM_001110150|Mgat1|17308|mannoside acetylglucosaminyltransferase 1
mm9_v1_chr16_+_31664188_31664368	0.0468695	PAX4.p2	AK143780|Dlg1|13383|discs, large homolog 1 (Drosophila)	AY159380|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr17_+_22498419_22498488	0.0467687	PAX4.p2	NM_145484|Zfp758|224598|zinc finger protein 758	BC037455|Zfp758|224598|zinc finger protein 758	AK028301|Zfp758|224598|zinc finger protein 758	BC022203|Zfp758|224598|zinc finger protein 758	BC056632|Zfp758|224598|zinc finger protein 758	BC021442|Zfp758|224598|zinc finger protein 758
mm9_v1_chr18_+_80403593_80403727	0.0467049	PAX4.p2	BC031634|Txnl4a|27366|thioredoxin-like 4A	BC014770|Txnl4a|27366|thioredoxin-like 4A	NM_001042408|Txnl4a|27366|thioredoxin-like 4A	AK011717|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr9_+_72892697_72892708	0.0464499	PAX4.p2	AK010373|Rab27a|11891|RAB27A, member RAS oncogene family
mm9_v1_chr16_-_85103501_85103536	0.0461282	PAX4.p2	AK194656|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr6_-_49195555_49195581	0.0457957	PAX4.p2	AK164994|Tra2a|101214|transformer 2 alpha homolog (Drosophila)
mm9_v1_chr13_+_33096472_33096539	0.0456787	PAX4.p2	AK035624|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	BC029900|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	AK087785|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	U96700|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9
mm9_v1_chr18_-_70632157_70632162	0.0454116	PAX4.p2	AK148410|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene	AK080780|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene
mm9_v1_chr13_-_53024983_53025057	0.0451199	PAX4.p2	BC026525|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK134886|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK019978|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003219|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003929|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK169661|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	BC049597|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	NM_016709|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK147855|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase
mm9_v1_chr17_+_13414053_13414053	0.0450599	PAX4.p2	AJ245453|Smok2a|27263|sperm motility kinase 2A	NM_013741|Smok2a|27263|sperm motility kinase 2A
mm9_v1_chr13_-_102453449_102453477	0.0443236	PAX4.p2	AK138868|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK049798|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr9_-_48644030_48644051	0.0439963	PAX4.p2	AK040211|Zbtb16|235320|zinc finger and BTB domain containing 16	AK142947|Zbtb16|235320|zinc finger and BTB domain containing 16	NM_001033324|Zbtb16|235320|zinc finger and BTB domain containing 16
mm9_v1_chr16_-_31274947_31275377	0.0439574	PAX4.p2	AK015349|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK053657|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069886|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK002671|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK032462|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK028603|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069885|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK150281|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	NM_025800|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm9_v1_chr7_-_20277986_20278006	0.0433718	PAX4.p2	NM_001110009|Apoc1|11812|apolipoprotein C-I
mm9_v1_chr16_+_20629926_20630044	0.0429644	PAX4.p2	AF396699|Ece2|107522|endothelin converting enzyme 2	BC138052|Ece2|107522|endothelin converting enzyme 2	BC138053|Ece2|107522|endothelin converting enzyme 2	BC145126|Ece2|107522|endothelin converting enzyme 2	AK043473|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr2_-_121181055_121181098	0.0410466	PAX4.p2	AK160847|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr7_+_19876447_19876478	0.0409945	PAX4.p2	NM_001025364|Rtn2|20167|reticulon 2 (Z-band associated protein)	AK160500|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038539|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr12_+_87027595_87027673	0.0404962	PAX4.p2	AK018587|Batf|53314|basic leucine zipper transcription factor, ATF-like	AF017021|Batf|53314|basic leucine zipper transcription factor, ATF-like	NM_016767|Batf|53314|basic leucine zipper transcription factor, ATF-like
mm9_v1_chr11_-_51670897_51671154	0.0404084	PAX4.p2	AK147453|Phf15|76901|PHD finger protein 15	AK129097|Phf15|76901|PHD finger protein 15	NM_199299|Phf15|76901|PHD finger protein 15	AK004823|Phf15|76901|PHD finger protein 15
mm9_v1_chr7_-_118214192_118214323	0.0394269	PAX4.p2	AK037763|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr2_+_58419708_58419797	0.0392466	PAX4.p2	AK087904|Upp2|76654|uridine phosphorylase 2	AK161816|Upp2|76654|uridine phosphorylase 2	AK044005|Upp2|76654|uridine phosphorylase 2
mm9_v1_chr17_+_26698421_26698560	0.0388877	PAX4.p2	BC005516|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	NM_026170|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK173123|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK003239|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK088157|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK004629|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK151239|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK084385|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	BC083144|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AB093571|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	CT010230|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
mm9_v1_chr19_+_57527393_57527409	0.0388187	PAX4.p2	NM_028115|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	NM_029839|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	AK011362|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)
mm9_v1_chr19_-_46454182_46454202	0.0385125	PAX4.p2	AK183380|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK181671|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK194654|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr5_+_73684200_73684212	0.0384227	PAX4.p2	AK181231|Ociad1|68095|OCIA domain containing 1	AK217055|Ociad1|68095|OCIA domain containing 1
mm9_v1_chr8_+_125626249_125626348	0.0383295	PAX4.p2	NM_016738|Rpl13|270106|ribosomal protein L13	AK003487|Rpl13|270106|ribosomal protein L13	AK010989|Rpl13|270106|ribosomal protein L13	AK002787|Rpl13|270106|ribosomal protein L13	U28917|Rpl13|270106|ribosomal protein L13	BC085493|Rpl13|270106|ribosomal protein L13	BC034449|Rpl13|270106|ribosomal protein L13	BC055358|Rpl13|270106|ribosomal protein L13
mm9_v1_chr6_-_38304558_38304602	0.0382452	PAX4.p2	AK167137|Zc3hav1|78781|zinc finger CCCH type, antiviral 1	AK080334|Zc3hav1|78781|zinc finger CCCH type, antiviral 1	AK004770|Zc3hav1|78781|zinc finger CCCH type, antiviral 1	AK172379|Zc3hav1|78781|zinc finger CCCH type, antiviral 1	NM_028421|Zc3hav1|78781|zinc finger CCCH type, antiviral 1	NM_028864|Zc3hav1|78781|zinc finger CCCH type, antiviral 1
mm9_v1_chr17_+_85025830_85025873	0.0377115	PAX4.p2	BC030450|Dync2li1|213575|dynein cytoplasmic 2 light intermediate chain 1	BC039070|Dync2li1|213575|dynein cytoplasmic 2 light intermediate chain 1	NM_172256|Dync2li1|213575|dynein cytoplasmic 2 light intermediate chain 1	AK008822|Dync2li1|213575|dynein cytoplasmic 2 light intermediate chain 1
mm9_v1_chr11_-_69509498_69509599	0.0366589	PAX4.p2	AK170297|Tnfsf12|21944|tumor necrosis factor (ligand) superfamily, member 12	AK171014|Tnfsf12|21944|tumor necrosis factor (ligand) superfamily, member 12	AK044387|BC096441|619441|cDNA sequence BC096441	NM_001034097|BC096441|619441|cDNA sequence BC096441	NM_001159503|BC096441|619441|cDNA sequence BC096441	NM_011614|Tnfsf12|21944|tumor necrosis factor (ligand) superfamily, member 12
mm9_v1_chr16_+_96689206_96689212	0.0363166	PAX4.p2	BC061164|Pcp4|18546|Purkinje cell protein 4	NM_008791|Pcp4|18546|Purkinje cell protein 4
mm9_v1_chr11_+_117643610_117643698	0.0360661	PAX4.p2	NM_001195089|Tmc8|217356|transmembrane channel-like gene family 8	NM_001195090|Tmc8|217356|transmembrane channel-like gene family 8	NM_181856|Tmc8|217356|transmembrane channel-like gene family 8	AK171772|Tmc8|217356|transmembrane channel-like gene family 8	AK156764|Tmc8|217356|transmembrane channel-like gene family 8	AY236501|Tmc8|217356|transmembrane channel-like gene family 8
mm9_v1_chr4_+_57907032_57907040	0.0360458	PAX4.p2	AK086796|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr7_+_89319717_89319836	0.036041	PAX4.p2	NM_017400|Sh3gl3|20408|SH3-domain GRB2-like 3	AK012114|Sh3gl3|20408|SH3-domain GRB2-like 3	BC100453|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr19_-_10944196_10944284	0.0360187	PAX4.p2	BC006896|Tmem132a|98170|transmembrane protein 132A	AK173207|Tmem132a|98170|transmembrane protein 132A	AK036651|Tmem132a|98170|transmembrane protein 132A	AK032956|Tmem132a|98170|transmembrane protein 132A	AK048556|Tmem132a|98170|transmembrane protein 132A	AK164646|Tmem132a|98170|transmembrane protein 132A	NM_133804|Tmem132a|98170|transmembrane protein 132A
mm9_v1_chr12_+_31269290_31269335	0.0355597	PAX4.p2	AK166323|Tmem18|211986|transmembrane protein 18	NM_172049|Tmem18|211986|transmembrane protein 18	AK133493|Tmem18|211986|transmembrane protein 18	AK160817|Tmem18|211986|transmembrane protein 18	AK170496|Tmem18|211986|transmembrane protein 18	BC024093|Tmem18|211986|transmembrane protein 18
mm9_v1_chr8_-_126545208_126545336	0.0355156	PAX4.p2	BC013550|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_133966|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK089463|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK154832|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr7_-_82454147_82454194	0.0354953	PAX4.p2	BC079568|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_153579|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr9_+_100978450_100978485	0.0353161	PAX4.p2	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr5_-_135825744_135825913	0.0352847	PAX4.p2	AY029192|Fkbp6|94244|FK506 binding protein 6	AF367710|Fkbp6|94244|FK506 binding protein 6	AF367711|Fkbp6|94244|FK506 binding protein 6	NM_033571|Fkbp6|94244|FK506 binding protein 6	AF367709|Fkbp6|94244|FK506 binding protein 6	AK090036|Fkbp6|94244|FK506 binding protein 6	BC139092|Fkbp6|94244|FK506 binding protein 6	BC139097|Fkbp6|94244|FK506 binding protein 6
mm9_v1_chr10_-_94786198_94786320	0.0349647	PAX4.p2	AJ224740|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK131713|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain
mm9_v1_chr8_-_13200534_13200625	0.0348178	PAX4.p2	AK017251|Grtp1|66790|GH regulated TBC protein 1	AK017197|Grtp1|66790|GH regulated TBC protein 1	AK044437|Grtp1|66790|GH regulated TBC protein 1	AK082863|Grtp1|66790|GH regulated TBC protein 1	AK149322|Grtp1|66790|GH regulated TBC protein 1	NM_025768|Grtp1|66790|GH regulated TBC protein 1	AK007905|Grtp1|66790|GH regulated TBC protein 1
mm9_v1_chr10_+_80392814_80392835	0.0346836	PAX4.p2	AK154952|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK010420|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK149895|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	BC023815|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	NM_008655|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	X54149|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta
mm9_v1_chr2_-_125332107_125332185	0.0344747	PAX4.p2	U22493|Fbn1|14118|fibrillin 1	AK080935|Fbn1|14118|fibrillin 1	NM_007993|Fbn1|14118|fibrillin 1
mm9_v1_chr11_-_55208276_55208319	0.0340445	PAX4.p2	
mm9_v1_chr5_+_135845811_135845865	0.0339188	PAX4.p2	AK079400|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	NM_145414|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK156651|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AF412029|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK149521|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5
mm9_v1_chr16_+_75593088_75593194	0.0335986	PAX4.p2	BC050779|Rbm11|224344|RNA binding motif protein 11	NM_198302|Rbm11|224344|RNA binding motif protein 11	AK039297|Rbm11|224344|RNA binding motif protein 11
mm9_v1_chr3_+_32607424_32607471	0.0332055	PAX4.p2	NM_019673|Actl6a|56456|actin-like 6A	AK013221|Actl6a|56456|actin-like 6A
mm9_v1_chr4_-_98049833_98049960	0.0331562	PAX4.p2	AK216092|Tm2d1|94043|TM2 domain containing 1	AF353993|Tm2d1|94043|TM2 domain containing 1	AK009511|Tm2d1|94043|TM2 domain containing 1	BC089492|Tm2d1|94043|TM2 domain containing 1	NM_053157|Tm2d1|94043|TM2 domain containing 1
mm9_v1_chr10_+_23908526_23908598	0.0330757	PAX4.p2	AK198523|Stx7|53331|syntaxin 7
mm9_v1_chr16_-_16358625_16358644	0.0330222	PAX4.p2	AK154123|Dnm1l|74006|dynamin 1-like	BC040777|Dnm1l|74006|dynamin 1-like
mm9_v1_chr10_+_80165400_80165511	0.0329188	PAX4.p2	NM_027829|Izumo4|71564|IZUMO family member 4	BC057953|Izumo4|71564|IZUMO family member 4
mm9_v1_chr12_-_80292805_80292827	0.0327544	PAX4.p2	AK004413|Rdh11|17252|retinol dehydrogenase 11	NM_021557|Rdh11|17252|retinol dehydrogenase 11	AB035959|Rdh11|17252|retinol dehydrogenase 11
mm9_v1_chr13_+_36209279_36209279	0.032648	PAX4.p2	NM_001039189|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	NM_024274|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr10_+_80289424_80289427	0.0324526	PAX4.p2	AK087942|Oaz1|18245|ornithine decarboxylase antizyme 1
mm9_v1_chr18_-_61825143_61825192	0.0322728	PAX4.p2	AK087736|E330013P06|328968|hypothetical protein E330013P06
mm9_v1_chr15_-_37722161_37722182	0.0321825	PAX4.p2	AK048440|Ncald|52589|neurocalcin delta	NM_134094|Ncald|52589|neurocalcin delta
mm9_v1_chr12_+_86337250_86337338	0.0320002	PAX4.p2	AK044440|Ylpm1|56531|YLP motif containing 1	NM_178363|Ylpm1|56531|YLP motif containing 1	BC031541|Ylpm1|56531|YLP motif containing 1	AK087500|Ylpm1|56531|YLP motif containing 1	AB033168|Ylpm1|56531|YLP motif containing 1
mm9_v1_chr8_-_26127211_26127343	0.0318249	PAX4.p2	U41765|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC052710|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC047156|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK148174|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK155672|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK161778|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr6_-_97129076_97129149	0.0316052	PAX4.p2	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr11_+_40547143_40547199	0.0314879	PAX4.p2	NM_026023|Nudcd2|52653|NudC domain containing 2	AK133774|Nudcd2|52653|NudC domain containing 2	AK005909|Nudcd2|52653|NudC domain containing 2	AK004388|Nudcd2|52653|NudC domain containing 2
mm9_v1_chr4_-_62180914_62181170	0.0313055	PAX4.p2	BC018236|Alad|17025|aminolevulinate, delta-, dehydratase	AK167673|Alad|17025|aminolevulinate, delta-, dehydratase	AK002300|Alad|17025|aminolevulinate, delta-, dehydratase	AK032908|Alad|17025|aminolevulinate, delta-, dehydratase	AK168119|Alad|17025|aminolevulinate, delta-, dehydratase	AK168132|Alad|17025|aminolevulinate, delta-, dehydratase	BC055930|Alad|17025|aminolevulinate, delta-, dehydratase	NM_008525|Alad|17025|aminolevulinate, delta-, dehydratase
mm9_v1_chr18_+_58996320_58996417	0.0312256	PAX4.p2	BC150736|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	AY135183|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	NM_175506|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm9_v1_chr3_-_57496415_57496458	0.0311882	PAX4.p2	AK134766|Gm410|242037|predicted gene 410	AK138483|Gm410|242037|predicted gene 410	NM_001033349|Gm410|242037|predicted gene 410
mm9_v1_chr5_+_104121392_104121475	0.030977	PAX4.p2	AK082878|Aff1|17355|AF4/FMR2 family, member 1
mm9_v1_chr6_+_116288396_116288456	0.0307069	PAX4.p2	AK005032|March8|71779|membrane-associated ring finger (C3HC4) 8	AK182250|March8|71779|membrane-associated ring finger (C3HC4) 8	AK189694|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr5_-_100158034_100158083	0.0304411	PAX4.p2	AK048739|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK086859|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK044414|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK050558|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene
mm9_v1_chr1_-_184397778_184397904	0.0303358	PAX4.p2	AK192389|Capn2|12334|calpain 2	AK203804|Capn2|12334|calpain 2	AK198770|Capn2|12334|calpain 2	AK203361|Capn2|12334|calpain 2
mm9_v1_chr13_-_12432984_12433003	0.0301393	PAX4.p2	AY036877|Actn2|11472|actinin alpha 2	AK047768|Actn2|11472|actinin alpha 2	BC089579|Actn2|11472|actinin alpha 2	NM_033268|Actn2|11472|actinin alpha 2
mm9_v1_chr5_+_104183216_104183347	0.0294499	PAX4.p2	AF074266|Aff1|17355|AF4/FMR2 family, member 1	AY749168|Aff1|17355|AF4/FMR2 family, member 1	BC131665|Aff1|17355|AF4/FMR2 family, member 1
mm9_v1_chr8_+_87356149_87356307	0.0293966	PAX4.p2	AK002738|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK003314|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK019570|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK028227|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC061069|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	NM_183358|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK009723|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC022592|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm9_v1_chr11_-_5662259_5662400	0.0291532	PAX4.p2	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr10_+_28388165_28388438	0.029071	PAX4.p2	AK041386|Themis|210757|thymocyte selection associated	AK088136|Themis|210757|thymocyte selection associated	AK089077|Themis|210757|thymocyte selection associated	NM_178666|Themis|210757|thymocyte selection associated	AK040594|Themis|210757|thymocyte selection associated	AK041622|Themis|210757|thymocyte selection associated	AK138701|Themis|210757|thymocyte selection associated	AK041562|Themis|210757|thymocyte selection associated	BC125486|Themis|210757|thymocyte selection associated	BC125488|Themis|210757|thymocyte selection associated	AB509340|Themis|210757|thymocyte selection associated	AK169558|Themis|210757|thymocyte selection associated
mm9_v1_chr19_-_14671832_14671910	0.028835	PAX4.p2	AF229633|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr11_-_103079731_103079745	0.0285004	PAX4.p2	DQ118647|4933400C05Rik|328019|RIKEN cDNA 4933400C05 gene	BC120775|4933400C05Rik|328019|RIKEN cDNA 4933400C05 gene	AK077068|4933400C05Rik|328019|RIKEN cDNA 4933400C05 gene	BC117072|4933400C05Rik|328019|RIKEN cDNA 4933400C05 gene	NM_177801|4933400C05Rik|328019|RIKEN cDNA 4933400C05 gene
mm9_v1_chr7_+_4744521_4744617	0.028457	PAX4.p2	X74856|Rpl28|19943|ribosomal protein L28	BC086932|Rpl28|19943|ribosomal protein L28	AK012368|Rpl28|19943|ribosomal protein L28	AK018714|Rpl28|19943|ribosomal protein L28	AK076133|Rpl28|19943|ribosomal protein L28	BC092012|Rpl28|19943|ribosomal protein L28	NM_009081|Rpl28|19943|ribosomal protein L28	BC024395|Rpl28|19943|ribosomal protein L28	BC086797|Rpl28|19943|ribosomal protein L28
mm9_v1_chr6_-_134847832_134848056	0.0280418	PAX4.p2	NM_001167695|Gpr19|14760|G protein-coupled receptor 19	NM_001167696|Gpr19|14760|G protein-coupled receptor 19	BC021648|Gpr19|14760|G protein-coupled receptor 19	AK132917|Gpr19|14760|G protein-coupled receptor 19	AK140770|Gpr19|14760|G protein-coupled receptor 19	AK160688|Gpr19|14760|G protein-coupled receptor 19	NM_001167693|Gpr19|14760|G protein-coupled receptor 19	NM_001167694|Gpr19|14760|G protein-coupled receptor 19	NM_001167700|Gpr19|14760|G protein-coupled receptor 19
mm9_v1_chr18_+_70632070_70632102	0.0278931	PAX4.p2	
mm9_v1_chr13_-_17786559_17786646	0.0278668	PAX4.p2	BC055852|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene	NM_138654|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene	BC064756|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene
mm9_v1_chr2_-_126959605_126959689	0.0276902	PAX4.p2	AK042706|Ncaph|215387|non-SMC condensin I complex, subunit H	BC025060|Ncaph|215387|non-SMC condensin I complex, subunit H	BC021499|Ncaph|215387|non-SMC condensin I complex, subunit H	AK028919|Ncaph|215387|non-SMC condensin I complex, subunit H	AK080433|Ncaph|215387|non-SMC condensin I complex, subunit H	NM_144818|Ncaph|215387|non-SMC condensin I complex, subunit H
mm9_v1_chr10_-_126700387_126700418	0.027672	PAX4.p2	AK220479|Kif5a|16572|kinesin family member 5A	AK140769|Kif5a|16572|kinesin family member 5A	NM_001039000|Kif5a|16572|kinesin family member 5A	NM_008447|Kif5a|16572|kinesin family member 5A
mm9_v1_chr1_+_87804881_87804999	0.0269723	PAX4.p2	AK195066|Itm2c|64294|integral membrane protein 2C	AK181068|Itm2c|64294|integral membrane protein 2C	AK184077|Itm2c|64294|integral membrane protein 2C	AK184543|Itm2c|64294|integral membrane protein 2C	AK184789|Itm2c|64294|integral membrane protein 2C	AK185815|Itm2c|64294|integral membrane protein 2C	AK187837|Itm2c|64294|integral membrane protein 2C	AK202316|Itm2c|64294|integral membrane protein 2C	AK208625|Itm2c|64294|integral membrane protein 2C	AK210908|Itm2c|64294|integral membrane protein 2C	AK214441|Itm2c|64294|integral membrane protein 2C	AK214627|Itm2c|64294|integral membrane protein 2C	AK188840|Itm2c|64294|integral membrane protein 2C	AK215527|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr5_-_122110456_122110520	0.0268703	PAX4.p2	BC027825|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10	AK050332|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10	AK148195|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10	NM_028037|Acad10|71985|acyl-Coenzyme A dehydrogenase family, member 10
mm9_v1_chr11_+_97702093_97702093	0.0268252	PAX4.p2	NM_001080935|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr9_+_44448105_44448130	0.025863	PAX4.p2	AK003265|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr10_-_33927262_33927356	0.0253616	PAX4.p2	AK045065|Dse|212898|dermatan sulfate epimerase	BC053095|Dse|212898|dermatan sulfate epimerase	NM_172508|Dse|212898|dermatan sulfate epimerase
mm9_v1_chr1_+_34364633_34364780	0.0250255	PAX4.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr18_-_70632130_70632138	0.0248339	PAX4.p2	AK037066|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene	NM_172967|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene
mm9_v1_chr4_+_144482979_144483095	0.0247556	PAX4.p2	AK032958|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	X95281|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	AK151419|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_011303|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	BC013540|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr2_+_125072955_125073018	0.0247314	PAX4.p2	AK135438|Dut|110074|deoxyuridine triphosphatase	NM_001159646|Dut|110074|deoxyuridine triphosphatase	AK017216|Dut|110074|deoxyuridine triphosphatase	BC019979|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr6_+_88148657_88148753	0.0246834	PAX4.p2	AK154981|Gata2|14461|GATA binding protein 2	NM_008090|Gata2|14461|GATA binding protein 2	AK004551|Gata2|14461|GATA binding protein 2	AK154792|Gata2|14461|GATA binding protein 2	BC107009|Gata2|14461|GATA binding protein 2
mm9_v1_chr19_-_41151561_41151602	0.0244682	PAX4.p2	BC060980|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	AK140031|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein	NM_153520|Opalin|226115|oligodendrocytic myelin paranodal and inner loop protein
mm9_v1_chr3_-_115591014_115591051	0.0239562	PAX4.p2	AK081943|A930005H10Rik|68161|RIKEN cDNA A930005H10 gene	AK137339|A930005H10Rik|68161|RIKEN cDNA A930005H10 gene	AK020812|A930005H10Rik|68161|RIKEN cDNA A930005H10 gene
mm9_v1_chr9_-_45636638_45636736	0.0236393	PAX4.p2	AK158671|Cep164|214552|centrosomal protein 164	NM_001081373|Cep164|214552|centrosomal protein 164
mm9_v1_chr1_-_99873641_99873694	0.0235309	PAX4.p2	AK049423|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr9_+_32443805_32443836	0.023343	PAX4.p2	AK052146|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK085799|LOC434391|434391|hypothetical LOC434391
mm9_v1_chr17_+_34341467_34341526	0.0233102	PAX4.p2	AK145234|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151657|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK161091|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC051257|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK020022|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK079667|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151376|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151483|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK153287|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC005578|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr16_+_20629900_20629923	0.0227158	PAX4.p2	AK031951|Ece2|107522|endothelin converting enzyme 2	AF489571|Ece2|107522|endothelin converting enzyme 2	AF489572|Ece2|107522|endothelin converting enzyme 2	NM_139293|Ece2|107522|endothelin converting enzyme 2	NM_177942|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr11_-_115873976_115874034	0.0222674	PAX4.p2	AB027012|Galk1|14635|galactokinase 1	AK168716|Galk1|14635|galactokinase 1	BC050151|Galk1|14635|galactokinase 1	AK045694|Galk1|14635|galactokinase 1	BC016602|Galk1|14635|galactokinase 1	AK010340|Galk1|14635|galactokinase 1	AK011103|Galk1|14635|galactokinase 1	AK088151|Galk1|14635|galactokinase 1	NM_016905|Galk1|14635|galactokinase 1
mm9_v1_chr3_+_35652981_35653067	0.0221521	PAX4.p2	AK154156|Atp11b|76295|ATPase, class VI, type 11B	AK155372|Atp11b|76295|ATPase, class VI, type 11B	NM_029570|Atp11b|76295|ATPase, class VI, type 11B	AK129248|Atp11b|76295|ATPase, class VI, type 11B
mm9_v1_chr11_-_101163456_101163604	0.0220288	PAX4.p2	AK189474|Becn1|56208|beclin 1, autophagy related	AK178460|Becn1|56208|beclin 1, autophagy related	AK151531|Becn1|56208|beclin 1, autophagy related	BC005770|Becn1|56208|beclin 1, autophagy related	BC027738|Becn1|56208|beclin 1, autophagy related	AK028851|Becn1|56208|beclin 1, autophagy related	AK083800|Becn1|56208|beclin 1, autophagy related	AK031501|Becn1|56208|beclin 1, autophagy related	AK032176|Becn1|56208|beclin 1, autophagy related	AK050329|Becn1|56208|beclin 1, autophagy related	NM_019584|Becn1|56208|beclin 1, autophagy related	AK077392|Becn1|56208|beclin 1, autophagy related
mm9_v1_chr3_-_129035406_129035666	0.022005	PAX4.p2	DQ000292|Enpep|13809|glutamyl aminopeptidase	M29961|Enpep|13809|glutamyl aminopeptidase	BC127060|Enpep|13809|glutamyl aminopeptidase	BC064061|Enpep|13809|glutamyl aminopeptidase	AK128975|Enpep|13809|glutamyl aminopeptidase	AK034613|Enpep|13809|glutamyl aminopeptidase	AK146808|Enpep|13809|glutamyl aminopeptidase	NM_007934|Enpep|13809|glutamyl aminopeptidase
mm9_v1_chr1_-_44159187_44159306	0.0219226	PAX4.p2	BC116881|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC119032|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	AK160565|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	NM_029368|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC099557|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene
mm9_v1_chr4_+_120550473_120550605	0.0219043	PAX4.p2	AY326953|Rims3|242662|regulating synaptic membrane exocytosis 3	BC115536|Rims3|242662|regulating synaptic membrane exocytosis 3	NM_182929|Rims3|242662|regulating synaptic membrane exocytosis 3	AK122226|Rims3|242662|regulating synaptic membrane exocytosis 3
mm9_v1_chr11_-_101285982_101286065	0.0215791	PAX4.p2	BC141198|1700113I22Rik|73635|RIKEN cDNA 1700113I22 gene
mm9_v1_chr3_+_142364014_142364083	0.0204676	PAX4.p2	AK145623|Ccbl2|229905|cysteine conjugate-beta lyase 2	AF363737|Ccbl2|229905|cysteine conjugate-beta lyase 2	AK049569|Ccbl2|229905|cysteine conjugate-beta lyase 2	NM_173763|Ccbl2|229905|cysteine conjugate-beta lyase 2	BC085287|Ccbl2|229905|cysteine conjugate-beta lyase 2
mm9_v1_chr6_+_91928871_91928905	0.0204323	PAX4.p2	AK220153|Fgd5|232237|FYVE, RhoGEF and PH domain containing 5
mm9_v1_chr11_+_103828184_103828347	0.0201656	PAX4.p2	AK053123|Arf2|11841|ADP-ribosylation factor 2	NM_007477|Arf2|11841|ADP-ribosylation factor 2	BC010487|Arf2|11841|ADP-ribosylation factor 2
mm9_v1_chr15_+_101858606_101858684	0.0200298	PAX4.p2	NM_010664|Krt18|16668|keratin 18	M11686|Krt18|16668|keratin 18	AK167469|Krt18|16668|keratin 18	AK145413|Krt18|16668|keratin 18	AK167072|Krt18|16668|keratin 18	AK167676|Krt18|16668|keratin 18	AK167432|Krt18|16668|keratin 18	AK167265|Krt18|16668|keratin 18	M36376|Krt18|16668|keratin 18	BC020474|Krt18|16668|keratin 18	BC089022|Krt18|16668|keratin 18
mm9_v1_chr8_+_35224310_35224396	0.0196368	PAX4.p2	AK185123|Tmem66|67887|transmembrane protein 66	AK180893|Tmem66|67887|transmembrane protein 66	AK197284|Tmem66|67887|transmembrane protein 66	AK207744|Tmem66|67887|transmembrane protein 66	AK213493|Tmem66|67887|transmembrane protein 66	AK211246|Tmem66|67887|transmembrane protein 66
mm9_v1_chr4_+_155205723_155205804	0.019564	PAX4.p2	AK003442|Aurkaip1|66077|aurora kinase A interacting protein 1	NM_025338|Aurkaip1|66077|aurora kinase A interacting protein 1	AK002737|Aurkaip1|66077|aurora kinase A interacting protein 1	AK158165|Aurkaip1|66077|aurora kinase A interacting protein 1	AK033452|Aurkaip1|66077|aurora kinase A interacting protein 1	AK166049|Aurkaip1|66077|aurora kinase A interacting protein 1	BC011245|Aurkaip1|66077|aurora kinase A interacting protein 1	AK144719|Aurkaip1|66077|aurora kinase A interacting protein 1
mm9_v1_chr5_+_65221116_65221144	0.0195024	PAX4.p2	AK036932|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr2_+_28061156_28061215	0.0193135	PAX4.p2	D78262|Olfm1|56177|olfactomedin 1	D78263|Olfm1|56177|olfactomedin 1	NM_001038612|Olfm1|56177|olfactomedin 1	NM_019498|Olfm1|56177|olfactomedin 1
mm9_v1_chr6_-_92484838_92484854	0.0192098	PAX4.p2	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr14_-_71035662_71035784	0.0190984	PAX4.p2	AK149301|Epb4.9|13829|erythrocyte protein band 4.9	AK158744|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr4_-_134909036_134909128	0.0190658	PAX4.p2	BC094322|Srrm1|51796|serine/arginine repetitive matrix 1	BC079542|Srrm1|51796|serine/arginine repetitive matrix 1	AF062655|Srrm1|51796|serine/arginine repetitive matrix 1	AK008284|Srrm1|51796|serine/arginine repetitive matrix 1	AK028412|Srrm1|51796|serine/arginine repetitive matrix 1	NM_001130477|Srrm1|51796|serine/arginine repetitive matrix 1	NM_016799|Srrm1|51796|serine/arginine repetitive matrix 1
mm9_v1_chr8_+_107872157_107872157	0.0190359	PAX4.p2	NM_001081332|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr5_+_138526376_138526387	0.018821	PAX4.p2	AK028932|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr7_+_134944106_134944154	0.0187225	PAX4.p2	NM_001040684|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	NM_133943|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AK077476|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr11_+_70338927_70338937	0.0186757	PAX4.p2	U13393|Psmb6|19175|proteasome (prosome, macropain) subunit, beta type 6
mm9_v1_chr4_-_149072755_149072816	0.017818	PAX4.p2	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr17_+_71168939_71168940	0.0175882	PAX4.p2	AK034215|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr3_-_30799013_30799120	0.017446	PAX4.p2	AK050678|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr3_-_137806320_137806370	0.0174411	PAX4.p2	AK171129|C230076A16Rik|320496|RIKEN cDNA C230076A16 gene	AK039300|C230076A16Rik|320496|RIKEN cDNA C230076A16 gene	AK136278|Mttp|17777|microsomal triglyceride transfer protein	NM_001163457|Mttp|17777|microsomal triglyceride transfer protein
mm9_v1_chr1_+_161453899_161453937	0.0171851	PAX4.p2	AK039390|Tnr|21960|tenascin R	NM_022312|Tnr|21960|tenascin R	AJ005844|Tnr|21960|tenascin R
mm9_v1_chr15_+_76210904_76210993	0.0170549	PAX4.p2	AK036810|Heatr7a|223658|HEAT repeat containing 7A	NM_175457|Heatr7a|223658|HEAT repeat containing 7A	AK170702|Heatr7a|223658|HEAT repeat containing 7A	AK090131|Heatr7a|223658|HEAT repeat containing 7A	AK147808|Heatr7a|223658|HEAT repeat containing 7A	AK147897|Heatr7a|223658|HEAT repeat containing 7A	AK038863|Heatr7a|223658|HEAT repeat containing 7A	AK052153|Heatr7a|223658|HEAT repeat containing 7A
mm9_v1_chr12_+_101348348_101348406	0.01688	PAX4.p2	AK161641|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK161723|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK133926|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK088411|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK148906|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	BC003860|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK166783|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK169015|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1
mm9_v1_chr16_-_20302299_20302462	0.0168405	PAX4.p2	AK039142|Parl|381038|presenilin associated, rhomboid-like	BC083153|Parl|381038|presenilin associated, rhomboid-like	AK151652|Parl|381038|presenilin associated, rhomboid-like	NM_001005767|Parl|381038|presenilin associated, rhomboid-like	AK150980|Parl|381038|presenilin associated, rhomboid-like	AK207637|Parl|381038|presenilin associated, rhomboid-like
mm9_v1_chr2_+_156588506_156588592	0.0168325	PAX4.p2	AK179758|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK186004|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr1_+_75435521_75435559	0.0162524	PAX4.p2	AK189243|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr14_+_70945119_70945160	0.0162011	PAX4.p2	AK012301|Reep4|72549|receptor accessory protein 4
mm9_v1_chr4_+_106721017_106721031	0.0159963	PAX4.p2	AK144320|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr14_-_21299301_21299354	0.0159881	PAX4.p2	NM_001110794|Anxa7|11750|annexin A7	NM_009674|Anxa7|11750|annexin A7
mm9_v1_chr17_+_34341417_34341460	0.0159222	PAX4.p2	NM_011530|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK159200|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr14_-_69860882_69860941	0.015823	PAX4.p2	BC019514|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr14_-_51766415_51766443	0.0157791	PAX4.p2	M27814|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	BC030036|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	AK075775|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	NM_011271|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)
mm9_v1_chr15_+_89041957_89042070	0.0153727	PAX4.p2	AK084684|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_026813|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_027805|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK083335|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	BC024879|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK018403|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chr17_-_25933989_25933999	0.0150612	PAX4.p2	AK087402|Metrn|70083|meteorin, glial cell differentiation regulator	NM_133719|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr11_-_118109789_118109956	0.0150512	PAX4.p2	BC057974|Cyth1|19157|cytohesin 1	AK078502|Cyth1|19157|cytohesin 1	AB013464|Cyth1|19157|cytohesin 1	AK220302|Cyth1|19157|cytohesin 1	AK172296|Cyth1|19157|cytohesin 1	AB035538|Cyth1|19157|cytohesin 1	AY126516|Cyth1|19157|cytohesin 1	NM_001112699|Cyth1|19157|cytohesin 1	NM_011180|Cyth1|19157|cytohesin 1
mm9_v1_chr13_-_23580611_23580725	0.0146469	PAX4.p2	BC139760|Btn2a2|238555|butyrophilin, subfamily 2, member A2	BC141341|Btn2a2|238555|butyrophilin, subfamily 2, member A2	AY177686|Btn2a2|238555|butyrophilin, subfamily 2, member A2	AK051061|Btn2a2|238555|butyrophilin, subfamily 2, member A2	NM_175938|Btn2a2|238555|butyrophilin, subfamily 2, member A2
mm9_v1_chr6_-_35489703_35489856	0.0144035	PAX4.p2	AK151106|Mtpn|14489|myotrophin	AK151147|Mtpn|14489|myotrophin	AK151564|Mtpn|14489|myotrophin	AK152317|Mtpn|14489|myotrophin	AK151687|Mtpn|14489|myotrophin	AK152272|Mtpn|14489|myotrophin	BC043084|Mtpn|14489|myotrophin	AK049398|Mtpn|14489|myotrophin	AK146473|Mtpn|14489|myotrophin	AK145755|Mtpn|14489|myotrophin	D78188|Mtpn|14489|myotrophin	AK002620|Mtpn|14489|myotrophin	AK083888|Mtpn|14489|myotrophin	BC054811|Mtpn|14489|myotrophin	AK150750|Mtpn|14489|myotrophin	AK132029|Mtpn|14489|myotrophin	AK151640|Mtpn|14489|myotrophin	AK151485|Mtpn|14489|myotrophin	AK028027|Mtpn|14489|myotrophin	U20290|Mtpn|14489|myotrophin	AK146305|Mtpn|14489|myotrophin
mm9_v1_chr17_+_24610828_24610911	0.0142452	PAX4.p2	AK079437|9930021D14Rik|319259|RIKEN cDNA 9930021D14 gene	NM_175682|9930021D14Rik|319259|RIKEN cDNA 9930021D14 gene	BC119389|9930021D14Rik|319259|RIKEN cDNA 9930021D14 gene	BC120670|9930021D14Rik|319259|RIKEN cDNA 9930021D14 gene	BC145010|9930021D14Rik|319259|RIKEN cDNA 9930021D14 gene
mm9_v1_chr12_-_99497200_99497260	0.0138736	PAX4.p2	AK020833|Galc|14420|galactosylceramidase
mm9_v1_chr14_+_55502291_55502313	0.0138618	PAX4.p2	AK015644|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr2_-_38920925_38921012	0.0137808	PAX4.p2	BC043090|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	NM_029793|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK028516|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC024637|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC053068|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK002954|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK008972|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK044987|Golga1|76899|golgi autoantigen, golgin subfamily a, 1
mm9_v1_chr12_+_8778201_8778241	0.013714	PAX4.p2	NM_011519|Sdc1|20969|syndecan 1	BC010560|Sdc1|20969|syndecan 1	X15487|Sdc1|20969|syndecan 1	AK162092|Sdc1|20969|syndecan 1	AK132491|Sdc1|20969|syndecan 1
mm9_v1_chr3_+_63100128_63100144	0.013353	PAX4.p2	AK040730|Mme|17380|membrane metallo endopeptidase	AK080202|Mme|17380|membrane metallo endopeptidase	BC034092|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr5_+_115347505_115347613	0.0131358	PAX4.p2	BC034361|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2	AK157649|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2	AK010034|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2	AK150492|Oasl2|23962|2'-5' oligoadenylate synthetase-like 2
mm9_v1_chr4_+_134481298_134481299	0.0131178	PAX4.p2	
mm9_v1_chr16_-_32003130_32003169	0.0129859	PAX4.p2	BC067014|Senp5|320213|SUMO/sentrin specific peptidase 5
mm9_v1_chr18_+_34480612_34480673	0.0128884	PAX4.p2	AK137301|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr4_-_129852030_129852047	0.0125891	PAX4.p2	BC018539|Tinagl1|94242|tubulointerstitial nephritis antigen-like 1	AK040827|Tinagl1|94242|tubulointerstitial nephritis antigen-like 1	AK087142|Tinagl1|94242|tubulointerstitial nephritis antigen-like 1	NM_001168333|Tinagl1|94242|tubulointerstitial nephritis antigen-like 1
mm9_v1_chr3_+_52072251_52072295	0.0124811	PAX4.p2	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr8_+_125927389_125927433	0.0124581	PAX4.p2	
mm9_v1_chr1_-_99873795_99873812	0.0124327	PAX4.p2	BC129869|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr13_-_54789548_54789560	0.0121603	PAX4.p2	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr4_-_135429686_135429709	0.0120648	PAX4.p2	AK018384|Pnrc2|52830|proline-rich nuclear receptor coactivator 2
mm9_v1_chr13_-_38694739_38694840	0.0118985	PAX4.p2	
mm9_v1_chr17_+_56767565_56767565	0.0117319	PAX4.p2	AK014981|4921529N20Rik|70944|RIKEN cDNA 4921529N20 gene	NM_175350|Tmem146|106757|transmembrane protein 146
mm9_v1_chr9_+_110379481_110379600	0.0116785	PAX4.p2	AK029776|Kif9|16578|kinesin family member 9	AK087008|Kif9|16578|kinesin family member 9	NM_001163569|Kif9|16578|kinesin family member 9	AJ132889|Kif9|16578|kinesin family member 9	BC115765|Kif9|16578|kinesin family member 9	AK029506|Kif9|16578|kinesin family member 9
mm9_v1_chr3_+_63100101_63100109	0.0115626	PAX4.p2	AK033824|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr2_-_173411352_173411489	0.0114148	PAX4.p2	AK080176|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK046376|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene
mm9_v1_chr1_+_74309108_74309138	0.0109789	PAX4.p2	AK211266|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr11_+_119134231_119134236	0.0106224	PAX4.p2	AK192147|Gaa|14387|glucosidase, alpha, acid	AK197764|Gaa|14387|glucosidase, alpha, acid	AK210560|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr10_-_5913894_5914027	0.0103352	PAX4.p2	BC138908|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC145732|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	AK038060|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC002139|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	NM_024261|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC099894|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene
mm9_v1_chr3_+_102975621_102975695	0.0100668	PAX4.p2	NM_026602|Bcas2|68183|breast carcinoma amplified sequence 2	BC013627|Bcas2|68183|breast carcinoma amplified sequence 2	BC037062|Bcas2|68183|breast carcinoma amplified sequence 2	AK018786|Bcas2|68183|breast carcinoma amplified sequence 2	AK005825|Bcas2|68183|breast carcinoma amplified sequence 2	AK020098|Bcas2|68183|breast carcinoma amplified sequence 2	AK153513|Bcas2|68183|breast carcinoma amplified sequence 2	AK166967|Bcas2|68183|breast carcinoma amplified sequence 2	AY043239|Bcas2|68183|breast carcinoma amplified sequence 2	BC023382|Bcas2|68183|breast carcinoma amplified sequence 2
mm9_v1_chr14_+_32973077_32973184	0.00993442	PAX4.p2	NM_001033988|Ncoa4|27057|nuclear receptor coactivator 4	AK129020|Ncoa4|27057|nuclear receptor coactivator 4	AK145070|Ncoa4|27057|nuclear receptor coactivator 4	AK145954|Ncoa4|27057|nuclear receptor coactivator 4	AK145945|Ncoa4|27057|nuclear receptor coactivator 4	AK147125|Ncoa4|27057|nuclear receptor coactivator 4	AK146498|Ncoa4|27057|nuclear receptor coactivator 4	AK146598|Ncoa4|27057|nuclear receptor coactivator 4	BC031528|Ncoa4|27057|nuclear receptor coactivator 4	AK143965|Ncoa4|27057|nuclear receptor coactivator 4	AK146646|Ncoa4|27057|nuclear receptor coactivator 4	BC085086|Ncoa4|27057|nuclear receptor coactivator 4
mm9_v1_chr13_-_64468380_64468393	0.00985976	PAX4.p2	Y18465|Ctsl|13039|cathepsin L
mm9_v1_chr6_+_113276944_113277091	0.00946958	PAX4.p2	AK146870|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	NM_010957|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	AK167456|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	U88621|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	AF003596|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	U96711|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	BC138733|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	BC138736|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	AK165875|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	Y11247|Ogg1|18294|8-oxoguanine DNA-glycosylase 1	AF000669|Ogg1|18294|8-oxoguanine DNA-glycosylase 1
mm9_v1_chr14_-_11994524_11994548	0.00915005	PAX4.p2	AF055573|Fhit|14198|fragile histidine triad gene	NM_010210|Fhit|14198|fragile histidine triad gene	AF047699|Fhit|14198|fragile histidine triad gene
mm9_v1_chr9_-_54874200_54874368	0.00851837	PAX4.p2	AY574262|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AF325346|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	BC120597|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	BC120599|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AF472588|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AK053497|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AK148786|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AF459029|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AK080475|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AK080415|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	NM_145129|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3	AK051730|Chrna3|110834|cholinergic receptor, nicotinic, alpha polypeptide 3
mm9_v1_chr8_+_109459623_109459679	0.00847675	PAX4.p2	AK131687|Sntb2|20650|syntrophin, basic 2	AK040423|Sntb2|20650|syntrophin, basic 2	AK165009|Sntb2|20650|syntrophin, basic 2	NM_009229|Sntb2|20650|syntrophin, basic 2	BC138850|Sntb2|20650|syntrophin, basic 2	BC145442|Sntb2|20650|syntrophin, basic 2	U00678|Sntb2|20650|syntrophin, basic 2	AK080059|Sntb2|20650|syntrophin, basic 2	AK165900|Sntb2|20650|syntrophin, basic 2
mm9_v1_chr19_+_60831889_60831889	0.00826698	PAX4.p2	BC085512|Nanos1|332397|nanos homolog 1 (Drosophila)	NM_178421|Nanos1|332397|nanos homolog 1 (Drosophila)
mm9_v1_chrX_-_71618556_71618610	0.0081745	PAX4.p2	EU599043|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599044|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599045|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	BC027440|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	NM_145406|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr12_-_16807691_16807691	0.00807868	PAX4.p2	NM_015764|Greb1|268527|gene regulated by estrogen in breast cancer protein
mm9_v1_chr19_-_55390300_55390527	0.00798575	PAX4.p2	AK179827|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK181252|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK206189|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK217393|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK185086|Zdhhc6|66980|zinc finger, DHHC domain containing 6	BC019614|Zdhhc6|66980|zinc finger, DHHC domain containing 6	BC033317|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK077693|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK139707|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK035172|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK077838|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK011373|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK144128|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK154741|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK038177|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK157494|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK010296|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK168497|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK050388|Zdhhc6|66980|zinc finger, DHHC domain containing 6	AK159304|Zdhhc6|66980|zinc finger, DHHC domain containing 6	NM_001033573|Zdhhc6|66980|zinc finger, DHHC domain containing 6	NM_025883|Zdhhc6|66980|zinc finger, DHHC domain containing 6
mm9_v1_chr7_-_29551532_29551548	0.00773365	PAX4.p2	AY176059|Nfkbib|18036|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	AK038631|Nfkbib|18036|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	NM_010908|Nfkbib|18036|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta
mm9_v1_chr5_-_115086269_115086364	0.00736887	PAX4.p2	AK158652|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4
mm9_v1_chr15_+_96199877_96199934	0.00723402	PAX4.p2	AK014481|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr15_-_83895778_83895778	0.00692637	PAX4.p2	BC065111|Efcab6|77627|EF-hand calcium binding domain 6	NM_029946|Efcab6|77627|EF-hand calcium binding domain 6
mm9_v1_chr11_-_94254221_94254308	0.00689138	PAX4.p2	BC048825|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK155664|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY841885|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	BC150788|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534127|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534128|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534129|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY795569|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK149551|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	NM_029600|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK156615|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK172420|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3
mm9_v1_chr19_-_40525876_40525887	0.00681006	PAX4.p2	AF078666|Sorbs1|20411|sorbin and SH3 domain containing 1	AF078667|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034962|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034963|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr4_-_135429471_135429602	0.00675625	PAX4.p2	AK218125|Pnrc2|52830|proline-rich nuclear receptor coactivator 2	AK077403|Pnrc2|52830|proline-rich nuclear receptor coactivator 2
mm9_v1_chr5_-_31350934_31350934	0.00674726	PAX4.p2	AK158896|Slc5a6|330064|solute carrier family 5 (sodium-dependent vitamin transporter), member 6	NM_001177621|Slc5a6|330064|solute carrier family 5 (sodium-dependent vitamin transporter), member 6
mm9_v1_chr8_+_125966855_125966934	0.00639059	PAX4.p2	AK081295|Def8|23854|differentially expressed in FDCP 8	AK133979|Def8|23854|differentially expressed in FDCP 8	AK028726|Def8|23854|differentially expressed in FDCP 8	AK050405|Def8|23854|differentially expressed in FDCP 8	AK087778|Def8|23854|differentially expressed in FDCP 8	AK164147|Def8|23854|differentially expressed in FDCP 8	NM_054046|Def8|23854|differentially expressed in FDCP 8	AK034028|Def8|23854|differentially expressed in FDCP 8	AK046271|Def8|23854|differentially expressed in FDCP 8	AK086174|Def8|23854|differentially expressed in FDCP 8	BC003306|Def8|23854|differentially expressed in FDCP 8	AK150334|Def8|23854|differentially expressed in FDCP 8	AK150994|Def8|23854|differentially expressed in FDCP 8
mm9_v1_chrX_+_133527693_133527841	0.00631936	PAX4.p2	NM_001035509|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_001035510|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_025893|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK005317|Zcchc18|66995|zinc finger, CCHC domain containing 18	BC017627|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK134856|Zcchc18|66995|zinc finger, CCHC domain containing 18
mm9_v1_chr15_-_96886327_96886398	0.00630084	PAX4.p2	AK164292|Slc38a4|69354|solute carrier family 38, member 4	AK167539|Slc38a4|69354|solute carrier family 38, member 4	AK051023|Slc38a4|69354|solute carrier family 38, member 4	NM_027052|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr7_+_75097142_75097267	0.00623815	PAX4.p2	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr2_-_52280154_52280300	0.00622126	PAX4.p2	
mm9_v1_chr4_+_115894518_115894602	0.00621341	PAX4.p2	BC053102|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	NM_181585|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK031936|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm9_v1_chr18_-_65553541_65553541	0.00618069	PAX4.p2	NM_001037294|Alpk2|225638|alpha-kinase 2
mm9_v1_chr18_-_24280308_24280378	0.00603396	PAX4.p2	BC056426|Ino80c|225280|INO80 complex subunit C	AK083718|Ino80c|225280|INO80 complex subunit C	NM_172625|Ino80c|225280|INO80 complex subunit C	AK077290|Ino80c|225280|INO80 complex subunit C	BC060961|Ino80c|225280|INO80 complex subunit C
mm9_v1_chr13_-_89881804_89881848	0.0059774	PAX4.p2	D28599|Vcan|13003|versican	D32040|Vcan|13003|versican
mm9_v1_chr7_+_107685583_107685597	0.00592346	PAX4.p2	
mm9_v1_chr18_+_63868337_63868349	0.00589461	PAX4.p2	AK052730|Wdr7|104082|WD repeat domain 7	NM_001014981|Wdr7|104082|WD repeat domain 7
mm9_v1_chr14_-_21167291_21167342	0.00572794	PAX4.p2	BC013470|Ecd|70601|ecdysoneless homolog (Drosophila)	AK028664|Ecd|70601|ecdysoneless homolog (Drosophila)	NM_027475|Ecd|70601|ecdysoneless homolog (Drosophila)
mm9_v1_chr15_+_6395353_6395370	0.00562071	PAX4.p2	X05475|C9|12279|complement component 9
mm9_v1_chr5_+_67652034_67652135	0.00559191	PAX4.p2	BC016570|Tmem33|67878|transmembrane protein 33	BC023966|Tmem33|67878|transmembrane protein 33	AK019127|Tmem33|67878|transmembrane protein 33
mm9_v1_chr8_-_67071497_67071512	0.00557432	PAX4.p2	
mm9_v1_chr4_+_44313865_44313931	0.00518666	PAX4.p2	AK167457|Melk|17279|maternal embryonic leucine zipper kinase	AK145316|Melk|17279|maternal embryonic leucine zipper kinase	AK208560|Melk|17279|maternal embryonic leucine zipper kinase
mm9_v1_chr9_-_58097569_58097598	0.00516465	PAX4.p2	AK052305|Pml|18854|promyelocytic leukemia	AK054135|Pml|18854|promyelocytic leukemia	AK028044|Pml|18854|promyelocytic leukemia	NM_008884|Pml|18854|promyelocytic leukemia	NM_178087|Pml|18854|promyelocytic leukemia
mm9_v1_chr4_+_120077885_120078004	0.00471313	PAX4.p2	AK083889|Scmh1|29871|sex comb on midleg homolog 1	NM_001159630|Scmh1|29871|sex comb on midleg homolog 1	NM_013883|Scmh1|29871|sex comb on midleg homolog 1	AK078012|Scmh1|29871|sex comb on midleg homolog 1
mm9_v1_chr18_+_65210574_65210693	0.004227	PAX4.p2	BC082281|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr3_+_13471681_13471721	0.00422272	PAX4.p2	AK079659|Ralyl|76897|RALY RNA binding protein-like	AK032086|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr7_+_97591618_97591648	0.00421129	PAX4.p2	AF408398|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr6_+_125072851_125072907	0.00392273	PAX4.p2	AK148402|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr4_-_135429739_135429747	0.00389534	PAX4.p2	AK012073|Pnrc2|52830|proline-rich nuclear receptor coactivator 2	AK013163|Pnrc2|52830|proline-rich nuclear receptor coactivator 2	AK031048|Pnrc2|52830|proline-rich nuclear receptor coactivator 2	AK075816|Pnrc2|52830|proline-rich nuclear receptor coactivator 2
mm9_v1_chr2_-_11475555_11475702	0.0037826	PAX4.p2	NM_001177758|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK138807|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr4_-_117564594_117564651	0.00372791	PAX4.p2	BC031124|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK018638|Dph2|67728|DPH2 homolog (S. cerevisiae)	NM_026344|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK011199|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK051026|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK080747|Dph2|67728|DPH2 homolog (S. cerevisiae)	BC014746|Dph2|67728|DPH2 homolog (S. cerevisiae)
mm9_v1_chr7_-_107731579_107731643	0.0036819	PAX4.p2	AK077636|Mrpl48|52443|mitochondrial ribosomal protein L48	BC037190|Mrpl48|52443|mitochondrial ribosomal protein L48	AK019161|Mrpl48|52443|mitochondrial ribosomal protein L48	AK171917|Mrpl48|52443|mitochondrial ribosomal protein L48	NM_198831|Mrpl48|52443|mitochondrial ribosomal protein L48
mm9_v1_chr17_+_26792701_26792940	0.00364194	PAX4.p2	AK177289|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK191970|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	AK204835|Ergic1|67458|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
mm9_v1_chr2_+_80171439_80171527	0.00319457	PAX4.p2	AK190686|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK204346|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK206826|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	BC002207|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10
mm9_v1_chr5_-_124804583_124804698	0.0030329	PAX4.p2	BC083075|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	NM_013812|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1	AK004852|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr2_+_151822270_151822363	0.00300375	PAX4.p2	AK029091|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK170158|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK009850|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene
mm9_v1_chr8_-_11478364_11478498	0.00298336	PAX4.p2	AK217678|Rab20|19332|RAB20, member RAS oncogene family	AB232614|Rab20|19332|RAB20, member RAS oncogene family	M79310|Rab20|19332|RAB20, member RAS oncogene family	NM_011227|Rab20|19332|RAB20, member RAS oncogene family	X80332|Rab20|19332|RAB20, member RAS oncogene family
mm9_v1_chr16_-_57754816_57754849	0.00291348	PAX4.p2	BC011061|Col8a1|12837|collagen, type VIII, alpha 1	BC058281|Col8a1|12837|collagen, type VIII, alpha 1	AK159542|Col8a1|12837|collagen, type VIII, alpha 1	AK029203|Col8a1|12837|collagen, type VIII, alpha 1	AK018742|Col8a1|12837|collagen, type VIII, alpha 1	AK032048|Col8a1|12837|collagen, type VIII, alpha 1	AK046370|Col8a1|12837|collagen, type VIII, alpha 1	NM_007739|Col8a1|12837|collagen, type VIII, alpha 1
mm9_v1_chr11_+_66838648_66838688	0.00291311	PAX4.p2	AK043094|Tmem220|338369|transmembrane protein 220	BC110628|Tmem220|338369|transmembrane protein 220	BC110629|Tmem220|338369|transmembrane protein 220	NM_177392|Tmem220|338369|transmembrane protein 220	AK078505|Tmem220|338369|transmembrane protein 220
mm9_v1_chr5_-_86539474_86539529	0.00291164	PAX4.p2	AK017687|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr4_-_46402288_46402309	0.00289287	PAX4.p2	AK044073|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK153576|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	NM_029086|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	BC092543|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK017931|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK052584|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene
mm9_v1_chr13_-_27530465_27530556	0.00258365	PAX4.p2	AF090140|Prl8a6|19112|prolactin family 8, subfamily a, member 6	NM_011167|Prl8a6|19112|prolactin family 8, subfamily a, member 6	BC099469|Prl8a6|19112|prolactin family 8, subfamily a, member 6	AK005435|Prl8a6|19112|prolactin family 8, subfamily a, member 6	AK005478|Prl8a6|19112|prolactin family 8, subfamily a, member 6
mm9_v1_chr5_+_112755377_112755459	0.00245224	PAX4.p2	AK148182|Tfip11|54723|tuftelin interacting protein 11	AK161154|Tfip11|54723|tuftelin interacting protein 11	AF290474|Tfip11|54723|tuftelin interacting protein 11	NM_018783|Tfip11|54723|tuftelin interacting protein 11	AK147973|Tfip11|54723|tuftelin interacting protein 11	AK164414|Tfip11|54723|tuftelin interacting protein 11	BC017682|Tfip11|54723|tuftelin interacting protein 11	AK148260|Tfip11|54723|tuftelin interacting protein 11
mm9_v1_chr3_-_116671720_116671775	0.00237062	PAX4.p2	AK136939|Palmd|114301|palmdelphin
mm9_v1_chr3_-_95675389_95675398	0.00224037	PAX4.p2	AK007838|Mrps21|66292|mitochondrial ribosomal protein S21	AK003462|Mrps21|66292|mitochondrial ribosomal protein S21	AK003602|Mrps21|66292|mitochondrial ribosomal protein S21	AK009049|Mrps21|66292|mitochondrial ribosomal protein S21
mm9_v1_chr1_-_175671849_175671956	0.00212077	PAX4.p2	BC150711|AI607873|226691|expressed sequence AI607873	AK054438|AI607873|226691|expressed sequence AI607873
mm9_v1_chr15_-_82983986_82984219	0.00205946	PAX4.p2	AK201219|Cyb5r3|109754|cytochrome b5 reductase 3	AK202020|Cyb5r3|109754|cytochrome b5 reductase 3	AK210504|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr3_+_134944239_134944255	0.00192467	PAX4.p2	BC036998|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr17_+_57244828_57244840	0.00183978	PAX4.p2	BC138767|Tnfsf9|21950|tumor necrosis factor (ligand) superfamily, member 9	BC138770|Tnfsf9|21950|tumor necrosis factor (ligand) superfamily, member 9	AK169471|Tnfsf9|21950|tumor necrosis factor (ligand) superfamily, member 9
mm9_v1_chr5_+_115157787_115157882	0.00162191	PAX4.p2	NM_029992|Tchp|77832|trichoplein, keratin filament binding	AK020912|Tchp|77832|trichoplein, keratin filament binding	AK159947|Tchp|77832|trichoplein, keratin filament binding	AK083027|Tchp|77832|trichoplein, keratin filament binding	BC043048|Tchp|77832|trichoplein, keratin filament binding
mm9_v1_chr10_+_28749890_28749938	0.00150923	PAX4.p2	
mm9_v1_chr11_+_87394647_87394667	0.00144292	PAX4.p2	AB078010|Sept4|18952|septin 4
mm9_v1_chr17_+_70774131_70774133	0.00122776	PAX4.p2	NM_027712|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	NM_177639|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	BC062120|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr7_-_20277921_20277955	0.00118387	PAX4.p2	AK011358|Apoc1|11812|apolipoprotein C-I	NM_007469|Apoc1|11812|apolipoprotein C-I
mm9_v1_chr19_-_45824047_45824092	0.00112518	PAX4.p2	AK011749|Npm3|18150|nucleoplasmin 3	NM_008723|Npm3|18150|nucleoplasmin 3	U64450|Npm3|18150|nucleoplasmin 3	AK146603|Npm3|18150|nucleoplasmin 3	AK171848|Npm3|18150|nucleoplasmin 3	AK157198|Npm3|18150|nucleoplasmin 3	BC048491|Npm3|18150|nucleoplasmin 3
mm9_v1_chr18_+_21119972_21120137	0.000918291	PAX4.p2	AK016103|Rnf125|67664|ring finger protein 125	AB259692|Rnf125|67664|ring finger protein 125
mm9_v1_chr17_-_56416148_56416230	0.000756506	PAX4.p2	AK054219|Ticam1|106759|toll-like receptor adaptor molecule 1	AK089679|Ticam1|106759|toll-like receptor adaptor molecule 1	AK083836|Ticam1|106759|toll-like receptor adaptor molecule 1	AK086237|Ticam1|106759|toll-like receptor adaptor molecule 1	BC037048|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155906|Ticam1|106759|toll-like receptor adaptor molecule 1	AK171578|Ticam1|106759|toll-like receptor adaptor molecule 1	AK143766|Ticam1|106759|toll-like receptor adaptor molecule 1	AK150150|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155245|Ticam1|106759|toll-like receptor adaptor molecule 1	NM_174989|Ticam1|106759|toll-like receptor adaptor molecule 1
mm9_v1_chr2_+_118572683_118572786	0.000220509	PAX4.p2	AK077391|5430417L22Rik|100043272|RIKEN cDNA 5430417L22 gene	AK040944|5430417L22Rik|100043272|RIKEN cDNA 5430417L22 gene
mm9_v1_chr2_-_126719808_126719853	7.68147e-05	PAX4.p2	AK080421|2010106G01Rik|66552|RIKEN cDNA 2010106G01 gene	AK081953|2010106G01Rik|66552|RIKEN cDNA 2010106G01 gene
mm9_v1_chr11_-_109583475_109583498	6.43524e-05	PAX4.p2	BC011274|Fam20a|208659|family with sequence similarity 20, member A
