mm9_v1_chr10_-_127613623_127613661	1.03409	PAX6.p2	NM_019711|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr8_-_112102961_112102972	0.777449	PAX6.p2	AK159676|Hp|15439|haptoglobin	S67972|Hp|15439|haptoglobin	AK150430|Hp|15439|haptoglobin	AK150830|Hp|15439|haptoglobin	AK152295|Hp|15439|haptoglobin	AK152698|Hp|15439|haptoglobin
mm9_v1_chr14_+_41918624_41918669	0.555031	PAX6.p2	AK153832|Mat1a|11720|methionine adenosyltransferase I, alpha	AK149542|Mat1a|11720|methionine adenosyltransferase I, alpha	L13622|Mat1a|11720|methionine adenosyltransferase I, alpha	BC011211|Mat1a|11720|methionine adenosyltransferase I, alpha	NM_133653|Mat1a|11720|methionine adenosyltransferase I, alpha
mm9_v1_chr8_-_112102946_112102953	0.473599	PAX6.p2	BC138872|Hp|15439|haptoglobin	M96827|Hp|15439|haptoglobin
mm9_v1_chr10_-_127613494_127613534	0.451572	PAX6.p2	BC021627|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AB026583|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK207205|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK054482|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr18_+_10325174_10325177	0.448762	PAX6.p2	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr11_+_121098532_121098610	0.421451	PAX6.p2	NM_026272|Narf|67608|nuclear prelamin A recognition factor	AK076232|Narf|67608|nuclear prelamin A recognition factor	AK081305|Narf|67608|nuclear prelamin A recognition factor	AK013432|Narf|67608|nuclear prelamin A recognition factor	BC016090|Narf|67608|nuclear prelamin A recognition factor
mm9_v1_chr1_-_167865030_167865141	0.347886	PAX6.p2	AJ296212|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198933|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198934|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489475|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489474|Pou2f1|18986|POU domain, class 2, transcription factor 1	X56230|Pou2f1|18986|POU domain, class 2, transcription factor 1
mm9_v1_chr1_+_174412343_174412487	0.275013	PAX6.p2	NM_001145800|Igsf9|93842|immunoglobulin superfamily, member 9	AK053544|Igsf9|93842|immunoglobulin superfamily, member 9	AK078536|Igsf9|93842|immunoglobulin superfamily, member 9	BC034594|Igsf9|93842|immunoglobulin superfamily, member 9	AK145121|Igsf9|93842|immunoglobulin superfamily, member 9	AF317839|Igsf9|93842|immunoglobulin superfamily, member 9	NM_033608|Igsf9|93842|immunoglobulin superfamily, member 9	BC040281|Igsf9|93842|immunoglobulin superfamily, member 9
mm9_v1_chr18_+_54113094_54113152	0.222767	PAX6.p2	AJ279839|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr3_-_144233091_144233106	0.216105	PAX6.p2	BC025443|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr5_+_76612903_76613006	0.205808	PAX6.p2	NM_011626|Tmem165|21982|transmembrane protein 165	BC037638|Tmem165|21982|transmembrane protein 165	AK004829|Tmem165|21982|transmembrane protein 165	M23568|Tmem165|21982|transmembrane protein 165
mm9_v1_chr8_-_95655156_95655184	0.168442	PAX6.p2	AF034435|Ces1c|13884|carboxylesterase 1C	BC028907|Ces1c|13884|carboxylesterase 1C	M57960|Ces1c|13884|carboxylesterase 1C	AK050444|Ces1c|13884|carboxylesterase 1C	NM_007954|Ces1c|13884|carboxylesterase 1C
mm9_v1_chr7_-_48754777_48754790	0.157397	PAX6.p2	BC089503|AW146154|101835|expressed sequence AW146154
mm9_v1_chr13_+_55802874_55802961	0.151871	PAX6.p2	BC006718|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr3_+_68376319_68376428	0.148717	PAX6.p2	BC060529|Schip1|30953|schwannomin interacting protein 1	AK021361|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr13_-_93258004_93258035	0.143062	PAX6.p2	AK134948|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr1_+_19202046_19202134	0.130192	PAX6.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr11_+_67779992_67780002	0.124591	PAX6.p2	AK166117|Stx8|55943|syntaxin 8	AF036716|Stx8|55943|syntaxin 8
mm9_v1_chr11_+_79845841_79845980	0.107774	PAX6.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr9_+_74899844_74899963	0.10273	PAX6.p2	AK078740|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr7_+_135390325_135390446	0.093846	PAX6.p2	DQ143891|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	BC056362|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	NM_009365|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1
mm9_v1_chr3_+_142364014_142364083	0.0858183	PAX6.p2	AK145623|Ccbl2|229905|cysteine conjugate-beta lyase 2	AF363737|Ccbl2|229905|cysteine conjugate-beta lyase 2	AK049569|Ccbl2|229905|cysteine conjugate-beta lyase 2	NM_173763|Ccbl2|229905|cysteine conjugate-beta lyase 2	BC085287|Ccbl2|229905|cysteine conjugate-beta lyase 2
mm9_v1_chr15_+_21041206_21041206	0.0856864	PAX6.p2	BC086655|Cdh12|215654|cadherin 12	NM_001008420|Cdh12|215654|cadherin 12
mm9_v1_chr14_+_32481114_32481230	0.0786999	PAX6.p2	AK189055|Btd|26363|biotinidase
mm9_v1_chr11_+_67779939_67779975	0.071247	PAX6.p2	AK003297|Stx8|55943|syntaxin 8	BC048479|Stx8|55943|syntaxin 8	BC061118|Stx8|55943|syntaxin 8	AK016271|Stx8|55943|syntaxin 8	AK011376|Stx8|55943|syntaxin 8
mm9_v1_chr11_+_67779990_67779991	0.0698955	PAX6.p2	AK018716|Stx8|55943|syntaxin 8
mm9_v1_chr11_-_17847399_17847495	0.0686244	PAX6.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr8_-_72644704_72644742	0.0641198	PAX6.p2	X84727|Ncan|13004|neurocan	BC065118|Ncan|13004|neurocan	NM_007789|Ncan|13004|neurocan
mm9_v1_chr16_+_5086296_5086328	0.0597288	PAX6.p2	
mm9_v1_chr3_+_144233390_144233449	0.0527383	PAX6.p2	NM_053102|Sep15|93684|selenoprotein	AF288740|Sep15|93684|selenoprotein
mm9_v1_chr17_-_27327042_27327306	0.0419293	PAX6.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr1_-_135650027_135650097	0.0413218	PAX6.p2	EU493094|Atp2b4|381290|ATPase, Ca++ transporting, plasma membrane 4	EU493095|Atp2b4|381290|ATPase, Ca++ transporting, plasma membrane 4	NM_001167949|Atp2b4|381290|ATPase, Ca++ transporting, plasma membrane 4	NM_213616|Atp2b4|381290|ATPase, Ca++ transporting, plasma membrane 4
mm9_v1_chr8_-_95603838_95603915	0.0400627	PAX6.p2	NM_001081372|Ces1b|382044|carboxylesterase 1B
mm9_v1_chr13_-_24083033_24083082	0.0386578	PAX6.p2	AK148468|Scgn|214189|secretagogin, EF-hand calcium binding protein	BC016093|Scgn|214189|secretagogin, EF-hand calcium binding protein	NM_145399|Scgn|214189|secretagogin, EF-hand calcium binding protein
mm9_v1_chr1_-_38109910_38110011	0.0357506	PAX6.p2	AK003934|Rev1|56210|REV1 homolog (S. cerevisiae)
mm9_v1_chr3_-_144233110_144233181	0.0326802	PAX6.p2	AK165112|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	AK088698|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	NM_011828|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr11_-_120668581_120668636	0.0247475	PAX6.p2	AK078721|Fasn|14104|fatty acid synthase
mm9_v1_chr2_-_89892475_89892478	0.0246963	PAX6.p2	BC111111|Olfr140|57272|olfactory receptor 140	BC141888|Olfr140|57272|olfactory receptor 140	NM_020515|Olfr140|57272|olfactory receptor 140
mm9_v1_chr2_+_154374639_154374777	0.0221421	PAX6.p2	AK005633|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	DQ080431|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	NM_029305|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147532|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC147533|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene	BC039797|1700003F12Rik|75480|RIKEN cDNA 1700003F12 gene
mm9_v1_chr3_-_144232768_144232936	0.0215414	PAX6.p2	AF169243|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	AF060178|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	BC059008|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr1_-_182160174_182160194	0.0212477	PAX6.p2	U57325|Psen2|19165|presenilin 2
mm9_v1_chr6_-_51413182_51413233	0.0150455	PAX6.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr8_-_28524173_28524415	0.014763	PAX6.p2	AY574265|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AJ245706|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AK149262|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	BC031985|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	NM_021369|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6
mm9_v1_chr5_-_17341512_17341522	0.0116653	PAX6.p2	AK052825|Cd36|12491|CD36 antigen
mm9_v1_chr1_+_107560433_107560513	0.0106458	PAX6.p2	AK035724|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_029349|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_173187|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK148005|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC051567|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117950|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117949|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK009628|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene
mm9_v1_chr4_+_6312276_6312305	0.00765299	PAX6.p2	AK178827|Sdcbp|53378|syndecan binding protein	AK213782|Sdcbp|53378|syndecan binding protein
mm9_v1_chr12_+_59312790_59312790	0.00746242	PAX6.p2	AK046464|Sstr1|20605|somatostatin receptor 1	NM_009216|Sstr1|20605|somatostatin receptor 1
mm9_v1_chr8_+_36739938_36739980	0.00645843	PAX6.p2	
mm9_v1_chr11_+_117222099_117222144	0.00414936	PAX6.p2	
mm9_v1_chrX_-_75336699_75336712	0.000798145	PAX6.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr14_+_35148567_35148593	0.000103937	PAX6.p2	AK213533|Glud1|14661|glutamate dehydrogenase 1
