mm9_v1_chr5_-_84846348_84846408	4.28918	UAAGACG	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr3_+_109143558_109143678	4.04328	UAAGACG	AK033253|Vav3|57257|vav 3 oncogene	NM_020505|Vav3|57257|vav 3 oncogene	AK041249|Vav3|57257|vav 3 oncogene
mm9_v1_chr4_-_109960078_109960115	3.53027	UAAGACG	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr6_+_15135505_15135508	3.49179	UAAGACG	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr14_+_12386043_12386066	2.25297	UAAGACG	BC079595|Ptprg|19270|protein tyrosine phosphatase, receptor type, G	NM_008981|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chr6_+_14851348_14851478	2.21666	UAAGACG	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr13_-_108680257_108680267	2.03304	UAAGACG	NM_145456|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr6_+_71657791_71657963	1.90219	UAAGACG	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr11_+_97311458_97311517	1.83412	UAAGACG	NM_021493|Arhgap23|58996|Rho GTPase activating protein 23
mm9_v1_chr3_-_119486305_119486325	1.69003	UAAGACG	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr4_-_91042997_91043190	1.66103	UAAGACG	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr18_+_10325174_10325177	1.626	UAAGACG	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr14_-_104243379_104243389	1.6053	UAAGACG	AK083415|Ednrb|13618|endothelin receptor type B	NM_001136061|Ednrb|13618|endothelin receptor type B
mm9_v1_chr19_-_14672472_14672537	1.57949	UAAGACG	AK017548|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	NM_011600|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr1_-_107253245_107253286	1.44878	UAAGACG	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr6_+_77192615_77192722	1.4235	UAAGACG	AK080836|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	NM_028880|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK014545|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK053345|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr6_-_39156706_39156787	1.41085	UAAGACG	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr19_+_21852816_21852904	1.3876	UAAGACG	NM_001033759|Tmem2|83921|transmembrane protein 2	NM_031997|Tmem2|83921|transmembrane protein 2	AK172599|Tmem2|83921|transmembrane protein 2	BC089353|Tmem2|83921|transmembrane protein 2	AK149667|Tmem2|83921|transmembrane protein 2	AK172691|Tmem2|83921|transmembrane protein 2	AK149803|Tmem2|83921|transmembrane protein 2	AK156343|Tmem2|83921|transmembrane protein 2
mm9_v1_chr2_-_44968728_44968798	1.38058	UAAGACG	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chrX_-_69901382_69901584	1.34464	UAAGACG	BC119317|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	BC120686|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	M86568|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK134760|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK039144|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	NM_008067|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm9_v1_chr18_-_13100228_13100349	1.33775	UAAGACG	AY536214|Osbpl1a|64291|oxysterol binding protein-like 1A	NM_207530|Osbpl1a|64291|oxysterol binding protein-like 1A	BC031735|Osbpl1a|64291|oxysterol binding protein-like 1A	AK090069|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr4_-_133843139_133843188	1.33175	UAAGACG	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chrX_+_96331434_96331470	1.23458	UAAGACG	AK034996|Efnb1|13641|ephrin B1	NM_010110|Efnb1|13641|ephrin B1
mm9_v1_chr12_-_114067537_114067639	1.22859	UAAGACG	AK036410|Cdca4|71963|cell division cycle associated 4	AK139945|Cdca4|71963|cell division cycle associated 4	BC055824|Cdca4|71963|cell division cycle associated 4	NM_028023|Cdca4|71963|cell division cycle associated 4	AK010535|Cdca4|71963|cell division cycle associated 4	AK032980|Cdca4|71963|cell division cycle associated 4
mm9_v1_chr17_+_83750246_83750339	1.07688	UAAGACG	AK144604|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114361|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114362|Eml4|78798|echinoderm microtubule associated protein like 4	NM_199466|Eml4|78798|echinoderm microtubule associated protein like 4	BC067011|Eml4|78798|echinoderm microtubule associated protein like 4	BC070427|Eml4|78798|echinoderm microtubule associated protein like 4	BC065178|Eml4|78798|echinoderm microtubule associated protein like 4	BC066099|Eml4|78798|echinoderm microtubule associated protein like 4	BC079619|Eml4|78798|echinoderm microtubule associated protein like 4
mm9_v1_chr14_-_67487226_67487503	1.07034	UAAGACG	Y10339|Dpysl2|12934|dihydropyrimidinase-like 2	X87242|Dpysl2|12934|dihydropyrimidinase-like 2	BC062955|Dpysl2|12934|dihydropyrimidinase-like 2	NM_009955|Dpysl2|12934|dihydropyrimidinase-like 2
mm9_v1_chr14_-_62058627_62058783	0.972172	UAAGACG	AF020772|Kpna3|16648|karyopherin (importin) alpha 3	AK011559|Kpna3|16648|karyopherin (importin) alpha 3	AK049373|Kpna3|16648|karyopherin (importin) alpha 3	BC026885|Kpna3|16648|karyopherin (importin) alpha 3	AK161664|Kpna3|16648|karyopherin (importin) alpha 3	NM_008466|Kpna3|16648|karyopherin (importin) alpha 3
mm9_v1_chr9_+_102620096_102620187	0.940757	UAAGACG	AK141348|Amotl2|56332|angiomotin-like 2	AK164819|Amotl2|56332|angiomotin-like 2	NM_019764|Amotl2|56332|angiomotin-like 2	AK077535|Amotl2|56332|angiomotin-like 2	AK169419|Amotl2|56332|angiomotin-like 2	BC035201|Amotl2|56332|angiomotin-like 2	BC027824|Amotl2|56332|angiomotin-like 2
mm9_v1_chr3_+_13946371_13946410	0.875246	UAAGACG	NM_001163329|Ralyl|76897|RALY RNA binding protein-like	NM_001163330|Ralyl|76897|RALY RNA binding protein-like	AK038465|Ralyl|76897|RALY RNA binding protein-like	BC052358|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr5_-_9161670_9161791	0.87412	UAAGACG	AK046201|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK078015|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC060109|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK029147|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK031887|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC045141|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC010272|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	U70017|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK040107|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK145803|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK033208|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK039563|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK030508|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK160595|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	NM_001110327|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	NM_011806|Dmtf1|23857|cyclin D binding myb-like transcription factor 1
mm9_v1_chr4_+_123582074_123582311	0.863811	UAAGACG	BC048478|Mycbp|56309|c-myc binding protein	AK033289|Mycbp|56309|c-myc binding protein	AK077633|Mycbp|56309|c-myc binding protein	AK037661|Mycbp|56309|c-myc binding protein	AK077762|Mycbp|56309|c-myc binding protein	AK077995|Mycbp|56309|c-myc binding protein	AK145773|Mycbp|56309|c-myc binding protein	NM_019660|Mycbp|56309|c-myc binding protein	BC028344|Mycbp|56309|c-myc binding protein	AB015858|Mycbp|56309|c-myc binding protein
mm9_v1_chr9_-_75257729_75257901	0.861119	UAAGACG	AK011505|Mapk6|50772|mitogen-activated protein kinase 6	AK044752|Mapk6|50772|mitogen-activated protein kinase 6	BC100385|Mapk6|50772|mitogen-activated protein kinase 6	NM_015806|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr4_-_91066674_91066674	0.859031	UAAGACG	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr17_-_6317399_6317473	0.85171	UAAGACG	EF110999|Dynlt1c|100040563|dynein light chain Tctex-type 1C	AK030569|Dynlt1a|100310872|dynein light chain Tctex-type 1A	BC087868|Dynlt1a|100310872|dynein light chain Tctex-type 1A	NM_001166629|Dynlt1a|100310872|dynein light chain Tctex-type 1A
mm9_v1_chr11_-_120852609_120852649	0.793763	UAAGACG	BC004604|Csnk1d|104318|casein kinase 1, delta	AK146600|Csnk1d|104318|casein kinase 1, delta	AK051052|Csnk1d|104318|casein kinase 1, delta	NM_027874|Csnk1d|104318|casein kinase 1, delta	NM_139059|Csnk1d|104318|casein kinase 1, delta
mm9_v1_chr8_+_119780918_119781056	0.791599	UAAGACG	NM_001163262|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	AK085367|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	BC158118|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr13_-_76081244_76081314	0.76289	UAAGACG	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr12_-_92828018_92828088	0.762817	UAAGACG	AF250834|Gtf2a1|83602|general transcription factor II A, 1	BC079909|Gtf2a1|83602|general transcription factor II A, 1	AK139996|Gtf2a1|83602|general transcription factor II A, 1	NM_031391|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr11_+_44332426_44332513	0.761556	UAAGACG	AK014408|Rnf145|74315|ring finger protein 145	NM_028862|Rnf145|74315|ring finger protein 145	AK043002|Rnf145|74315|ring finger protein 145
mm9_v1_chr4_-_109959366_109959438	0.758485	UAAGACG	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr5_+_67999118_67999207	0.691821	UAAGACG	AK143290|Shisa3|330096|shisa homolog 3 (Xenopus laevis)	NM_001033415|Shisa3|330096|shisa homolog 3 (Xenopus laevis)	AK085772|Shisa3|330096|shisa homolog 3 (Xenopus laevis)
mm9_v1_chr11_+_80290509_80290569	0.685361	UAAGACG	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr4_+_47366162_47366183	0.650223	UAAGACG	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr14_-_52723590_52723721	0.587306	UAAGACG	AK214960|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK184811|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	BC095922|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AF095257|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK012633|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	BC004706|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK011336|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK088678|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK169287|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK168802|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK010845|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK150399|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK019958|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK088245|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK151446|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK153053|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK089061|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	AK166590|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	NM_001170981|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	NM_001170982|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	NM_001170983|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	NM_001170984|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C	NM_016884|Hnrnpc|15381|heterogeneous nuclear ribonucleoprotein C
mm9_v1_chr2_-_7317513_7317626	0.586654	UAAGACG	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chrX_+_34138197_34138219	0.571618	UAAGACG	AK162315|Pgrmc1|53328|progesterone receptor membrane component 1	AK169063|Pgrmc1|53328|progesterone receptor membrane component 1	AK153272|Pgrmc1|53328|progesterone receptor membrane component 1	AK159101|Pgrmc1|53328|progesterone receptor membrane component 1	AK166240|Pgrmc1|53328|progesterone receptor membrane component 1	AK167655|Pgrmc1|53328|progesterone receptor membrane component 1	AK168882|Pgrmc1|53328|progesterone receptor membrane component 1	AK168387|Pgrmc1|53328|progesterone receptor membrane component 1	AK159345|Pgrmc1|53328|progesterone receptor membrane component 1	AK159599|Pgrmc1|53328|progesterone receptor membrane component 1	BC006016|Pgrmc1|53328|progesterone receptor membrane component 1	NM_016783|Pgrmc1|53328|progesterone receptor membrane component 1
mm9_v1_chr8_-_8690519_8690552	0.566467	UAAGACG	BC046971|Arglu1|234023|arginine and glutamate rich 1	NM_176849|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr12_-_47919695_47919761	0.55486	UAAGACG	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr4_-_133684599_133684716	0.552276	UAAGACG	AK003431|Sh3bgrl3|73723|SH3 domain binding glutamic acid-rich protein-like 3	BC008110|Sh3bgrl3|73723|SH3 domain binding glutamic acid-rich protein-like 3	NM_080559|Sh3bgrl3|73723|SH3 domain binding glutamic acid-rich protein-like 3
mm9_v1_chr2_+_30093236_30093288	0.546032	UAAGACG	NM_177725|Lrrc8a|241296|leucine rich repeat containing 8A
mm9_v1_chr13_-_112280018_112280262	0.543161	UAAGACG	BC067075|Gpbp1|73274|GC-rich promoter binding protein 1	AK136894|Gpbp1|73274|GC-rich promoter binding protein 1	AK161928|Gpbp1|73274|GC-rich promoter binding protein 1	BC094888|Gpbp1|73274|GC-rich promoter binding protein 1	AK169406|Gpbp1|73274|GC-rich promoter binding protein 1	AY382529|Gpbp1|73274|GC-rich promoter binding protein 1	AK082704|Gpbp1|73274|GC-rich promoter binding protein 1	BC096442|Gpbp1|73274|GC-rich promoter binding protein 1	BC076635|Gpbp1|73274|GC-rich promoter binding protein 1	AK163370|Gpbp1|73274|GC-rich promoter binding protein 1	AK135728|Gpbp1|73274|GC-rich promoter binding protein 1	AK145318|Gpbp1|73274|GC-rich promoter binding protein 1	AK163390|Gpbp1|73274|GC-rich promoter binding protein 1	NM_001122963|Gpbp1|73274|GC-rich promoter binding protein 1	NM_028487|Gpbp1|73274|GC-rich promoter binding protein 1	AK006608|Gpbp1|73274|GC-rich promoter binding protein 1
mm9_v1_chr3_-_116126932_116126949	0.532887	UAAGACG	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr2_+_160471623_160471632	0.526758	UAAGACG	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr17_+_29686744_29686746	0.517405	UAAGACG	BC045600|Tbc1d22b|381085|TBC1 domain family, member 22B	NM_198647|Tbc1d22b|381085|TBC1 domain family, member 22B
mm9_v1_chr14_-_73109722_73109912	0.501576	UAAGACG	AK089380|Fndc3a|319448|fibronectin type III domain containing 3A	AK032733|Fndc3a|319448|fibronectin type III domain containing 3A	AK164398|Fndc3a|319448|fibronectin type III domain containing 3A	AK048586|Fndc3a|319448|fibronectin type III domain containing 3A	DQ192036|Fndc3a|319448|fibronectin type III domain containing 3A	NM_207636|Fndc3a|319448|fibronectin type III domain containing 3A
mm9_v1_chr1_+_160292470_160292548	0.496931	UAAGACG	AK164117|Astn1|11899|astrotactin 1	NM_007495|Astn1|11899|astrotactin 1	BC094666|Astn1|11899|astrotactin 1
mm9_v1_chr3_+_13471643_13471656	0.47558	UAAGACG	NM_001163328|Ralyl|76897|RALY RNA binding protein-like	NM_178631|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr4_+_137772474_137772594	0.464279	UAAGACG	AK150784|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK166161|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_001122896|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_010470|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK004938|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK028181|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK050234|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK075725|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK043260|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK161041|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC020024|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC107687|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr8_-_124175827_124175832	0.463387	UAAGACG	BC132449|Zcchc14|142682|zinc finger, CCHC domain containing 14	BC137853|Zcchc14|142682|zinc finger, CCHC domain containing 14	AB030244|Zcchc14|142682|zinc finger, CCHC domain containing 14	NM_080855|Zcchc14|142682|zinc finger, CCHC domain containing 14
mm9_v1_chr9_+_86360760_86360843	0.457045	UAAGACG	NM_177208|Dopey1|320615|dopey family member 1	AK054511|Dopey1|320615|dopey family member 1	AK082462|Dopey1|320615|dopey family member 1	AK044820|Dopey1|320615|dopey family member 1	AK052544|Dopey1|320615|dopey family member 1	AK045873|Dopey1|320615|dopey family member 1
mm9_v1_chr8_-_119517339_119517451	0.449711	UAAGACG	AK003788|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	AK019983|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	NM_026572|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	BC014745|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	AK050373|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)
mm9_v1_chr19_-_32786771_32786846	0.447402	UAAGACG	BC043051|Atad1|67979|ATPase family, AAA domain containing 1	AK044925|Atad1|67979|ATPase family, AAA domain containing 1	BC029085|Atad1|67979|ATPase family, AAA domain containing 1	NM_026487|Atad1|67979|ATPase family, AAA domain containing 1	AK014967|Atad1|67979|ATPase family, AAA domain containing 1	AK030719|Atad1|67979|ATPase family, AAA domain containing 1	AK150469|Atad1|67979|ATPase family, AAA domain containing 1	AK152059|Atad1|67979|ATPase family, AAA domain containing 1	AK033639|Atad1|67979|ATPase family, AAA domain containing 1	AK165953|Atad1|67979|ATPase family, AAA domain containing 1	AK075685|Atad1|67979|ATPase family, AAA domain containing 1
mm9_v1_chr18_+_37098858_37098971	0.424409	UAAGACG	BC030897|Pcdha2|353234|protocadherin alpha 2	NM_198117|Pcdha2|353234|protocadherin alpha 2	BC141390|Pcdha2|353234|protocadherin alpha 2	AY013760|Pcdha2|353234|protocadherin alpha 2
mm9_v1_chr4_-_118966945_118967127	0.417214	UAAGACG	X57621|Ybx1|22608|Y box protein 1	M62867|Ybx1|22608|Y box protein 1	U33196|Ybx1|22608|Y box protein 1	BC029747|Ybx1|22608|Y box protein 1	BC013620|Ybx1|22608|Y box protein 1	M60419|Ybx1|22608|Y box protein 1	BC061634|Ybx1|22608|Y box protein 1	BC031472|Ybx1|22608|Y box protein 1	BC049977|Ybx1|22608|Y box protein 1	BC013450|Ybx1|22608|Y box protein 1	AK011890|Ybx1|22608|Y box protein 1	AK150821|Ybx1|22608|Y box protein 1	NM_011732|Ybx1|22608|Y box protein 1
mm9_v1_chr3_+_89324085_89324085	0.40512	UAAGACG	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr3_-_79371600_79371778	0.40044	UAAGACG	NM_001162999|Fnip2|329679|folliculin interacting protein 2
mm9_v1_chrX_-_141921588_141921636	0.37327	UAAGACG	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr10_+_95403283_95403412	0.372926	UAAGACG	AK042055|Eea1|216238|early endosome antigen 1	NM_001001932|Eea1|216238|early endosome antigen 1	AK082278|Eea1|216238|early endosome antigen 1	AK163235|Eea1|216238|early endosome antigen 1	BC021363|Eea1|216238|early endosome antigen 1	BC075637|Eea1|216238|early endosome antigen 1	AK046231|Eea1|216238|early endosome antigen 1	AK040844|Eea1|216238|early endosome antigen 1
mm9_v1_chr3_+_94641479_94641499	0.370177	UAAGACG	NM_001165948|Pogz|229584|pogo transposable element with ZNF domain	NM_172683|Pogz|229584|pogo transposable element with ZNF domain	BC065134|Pogz|229584|pogo transposable element with ZNF domain	BC066108|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr9_+_44187572_44187715	0.368626	UAAGACG	NM_021395|Hyou1|12282|hypoxia up-regulated 1	AK128937|Hyou1|12282|hypoxia up-regulated 1	AK155721|Hyou1|12282|hypoxia up-regulated 1	AK145857|Hyou1|12282|hypoxia up-regulated 1	AK171769|Hyou1|12282|hypoxia up-regulated 1	BC058255|Hyou1|12282|hypoxia up-regulated 1	AK157949|Hyou1|12282|hypoxia up-regulated 1	BC019785|Hyou1|12282|hypoxia up-regulated 1	BC050107|Hyou1|12282|hypoxia up-regulated 1
mm9_v1_chr11_-_104411728_104411933	0.334477	UAAGACG	AK039377|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK148278|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC023187|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK161471|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC157955|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172100|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172149|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	NM_145436|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)
mm9_v1_chr1_+_74552600_74552699	0.328013	UAAGACG	AK005025|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)	NM_021383|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm9_v1_chr18_+_37127284_37127409	0.327281	UAAGACG	D86917|Pcdha6|12937|protocadherin alpha 6	BC150815|Pcdha6|12937|protocadherin alpha 6	BC150816|Pcdha6|12937|protocadherin alpha 6	BC054813|Pcdha6|12937|protocadherin alpha 6	AY013764|Pcdha6|12937|protocadherin alpha 6	NM_007767|Pcdha6|12937|protocadherin alpha 6
mm9_v1_chr7_-_118226515_118226580	0.322231	UAAGACG	AK150745|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK151637|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK144309|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	U76112|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC057673|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC127064|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_001040131|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_013507|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr12_+_33063653_33063723	0.319933	UAAGACG	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr3_-_115956312_115956401	0.317547	UAAGACG	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chr11_-_106649652_106649810	0.304765	UAAGACG	BC108369|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK203495|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129873|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129874|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC086320|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC046554|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	X65627|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC062916|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK044792|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK076018|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK088887|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK129022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK135173|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK166045|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	NM_007840|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr12_-_70782807_70782838	0.301344	UAAGACG	NM_001135559|Sos2|20663|son of sevenless homolog 2 (Drosophila)
mm9_v1_chr3_+_41368801_41368825	0.300097	UAAGACG	NM_001130186|Phf17|269424|PHD finger protein 17
mm9_v1_chr9_-_50535949_50536088	0.299302	UAAGACG	AY549884|Dixdc1|330938|DIX domain containing 1	AK016205|Dixdc1|330938|DIX domain containing 1	BC048182|Dixdc1|330938|DIX domain containing 1	BC063085|Dixdc1|330938|DIX domain containing 1	AK164424|Dixdc1|330938|DIX domain containing 1	NM_178118|Dixdc1|330938|DIX domain containing 1
mm9_v1_chr11_+_117515548_117515602	0.286689	UAAGACG	NM_198022|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr6_+_97160749_97160814	0.285439	UAAGACG	AF421860|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK077826|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	NM_022992|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK076519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK088205|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF133912|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	BC003897|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK008519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK005259|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF265214|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr18_+_37105758_37105860	0.28099	UAAGACG	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr5_+_73305509_73305751	0.277016	UAAGACG	NM_001113423|Slain2|75991|SLAIN motif family, member 2	NM_153567|Slain2|75991|SLAIN motif family, member 2	AK146432|Slain2|75991|SLAIN motif family, member 2	AK129365|Slain2|75991|SLAIN motif family, member 2	BC010836|Slain2|75991|SLAIN motif family, member 2	AK033137|Slain2|75991|SLAIN motif family, member 2	AK039970|Slain2|75991|SLAIN motif family, member 2	BC076573|Slain2|75991|SLAIN motif family, member 2
mm9_v1_chr11_-_82684653_82684724	0.274665	UAAGACG	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr14_+_79826199_79826317	0.271839	UAAGACG	AK135854|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	BC096019|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	NM_001024135|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7
mm9_v1_chr7_+_73254341_73254400	0.26317	UAAGACG	AK129255|Chsy1|269941|chondroitin sulfate synthase 1	BC128567|Chsy1|269941|chondroitin sulfate synthase 1	BC153826|Chsy1|269941|chondroitin sulfate synthase 1	BC153827|Chsy1|269941|chondroitin sulfate synthase 1	NM_001081163|Chsy1|269941|chondroitin sulfate synthase 1
mm9_v1_chr10_+_90039435_90039495	0.262583	UAAGACG	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr11_+_46250456_46250527	0.262267	UAAGACG	AK010357|Med7|66213|mediator complex subunit 7	NM_001104556|Med7|66213|mediator complex subunit 7	NM_025426|Med7|66213|mediator complex subunit 7	AK147739|Med7|66213|mediator complex subunit 7	BC011333|Med7|66213|mediator complex subunit 7	AK012799|Med7|66213|mediator complex subunit 7	AK004354|Med7|66213|mediator complex subunit 7	AK144918|Med7|66213|mediator complex subunit 7	AK167407|Med7|66213|mediator complex subunit 7
mm9_v1_chr15_+_9070294_9070420	0.258668	UAAGACG	AK036527|Lmbrd2|320506|LMBR1 domain containing 2	AK079450|Lmbrd2|320506|LMBR1 domain containing 2	NM_177178|Lmbrd2|320506|LMBR1 domain containing 2	BC120727|Lmbrd2|320506|LMBR1 domain containing 2	BC125421|Lmbrd2|320506|LMBR1 domain containing 2	AK153728|Lmbrd2|320506|LMBR1 domain containing 2	BC095971|Lmbrd2|320506|LMBR1 domain containing 2
mm9_v1_chr11_-_97436439_97436456	0.251966	UAAGACG	AF040944|Srcin1|56013|SRC kinase signaling inhibitor 1	NM_018873|Srcin1|56013|SRC kinase signaling inhibitor 1	U59873|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr7_-_73834420_73834446	0.247372	UAAGACG	BC085155|Asb7|117589|ankyrin repeat and SOCS box-containing 7	NM_080443|Asb7|117589|ankyrin repeat and SOCS box-containing 7
mm9_v1_chr2_-_72818502_72818502	0.232084	UAAGACG	BC079874|Sp3|20687|trans-acting transcription factor 3	NM_001018042|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr1_-_135557934_135557977	0.218277	UAAGACG	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr18_+_34380575_34380671	0.217813	UAAGACG	AK042021|Apc|11789|adenomatosis polyposis coli	AK080907|Apc|11789|adenomatosis polyposis coli	NM_007462|Apc|11789|adenomatosis polyposis coli	AK046280|Apc|11789|adenomatosis polyposis coli	AK045053|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr2_+_69561103_69561149	0.215999	UAAGACG	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr18_+_37133455_37133703	0.214065	UAAGACG	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr4_-_59562054_59562263	0.21091	UAAGACG	BC057641|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	BC006638|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	AK033732|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	AK088560|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	NM_144904|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	NM_178164|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)
mm9_v1_chr5_+_108026714_108026792	0.204919	UAAGACG	AK034418|Rpap2|231571|RNA polymerase II associated protein 2	AK161901|Rpap2|231571|RNA polymerase II associated protein 2	NM_001163461|Rpap2|231571|RNA polymerase II associated protein 2	NM_144911|Rpap2|231571|RNA polymerase II associated protein 2	AK145830|Rpap2|231571|RNA polymerase II associated protein 2	BC021895|Rpap2|231571|RNA polymerase II associated protein 2	AK166574|Rpap2|231571|RNA polymerase II associated protein 2
mm9_v1_chr9_+_111174321_111174442	0.190879	UAAGACG	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr11_-_72303293_72303434	0.183414	UAAGACG	AB441166|Spns2|216892|spinster homolog 2 (Drosophila)	NM_153060|Spns2|216892|spinster homolog 2 (Drosophila)	BC011467|Spns2|216892|spinster homolog 2 (Drosophila)
mm9_v1_chr16_+_44173356_44173509	0.17509	UAAGACG	NM_001029889|Gm608|207806|predicted gene 608
mm9_v1_chr16_-_78576898_78576912	0.174531	UAAGACG	AK009258|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	NM_025967|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr2_-_167457476_167457545	0.1745	UAAGACG	AK012021|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	BC003449|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	AK158230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	NM_023230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1
mm9_v1_chr16_-_5049999_5050021	0.170606	UAAGACG	NM_001079814|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	NM_028720|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)
mm9_v1_chr11_-_70832737_70832807	0.165684	UAAGACG	AF208064|Derl2|116891|Der1-like domain family, member 2	AK083632|Derl2|116891|Der1-like domain family, member 2	BC005682|Derl2|116891|Der1-like domain family, member 2	AK083725|Derl2|116891|Der1-like domain family, member 2	AK048627|Derl2|116891|Der1-like domain family, member 2	AK077659|Derl2|116891|Der1-like domain family, member 2	AK082564|Derl2|116891|Der1-like domain family, member 2	NM_033562|Derl2|116891|Der1-like domain family, member 2	AK090105|Derl2|116891|Der1-like domain family, member 2
mm9_v1_chr1_-_9738415_9738520	0.165528	UAAGACG	BC006059|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	AK030104|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	AK122563|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	BC059209|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	NM_173443|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	AK144688|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1
mm9_v1_chr1_+_138027943_138028013	0.164415	UAAGACG	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr9_+_86916846_86916935	0.161009	UAAGACG	AK090159|Cyb5r4|266690|cytochrome b5 reductase 4	NM_024195|Cyb5r4|266690|cytochrome b5 reductase 4	AK157312|Cyb5r4|266690|cytochrome b5 reductase 4	AK169937|Cyb5r4|266690|cytochrome b5 reductase 4	AK169995|Cyb5r4|266690|cytochrome b5 reductase 4	BC025438|Cyb5r4|266690|cytochrome b5 reductase 4	AK034878|Cyb5r4|266690|cytochrome b5 reductase 4	AK172252|Cyb5r4|266690|cytochrome b5 reductase 4
mm9_v1_chr9_+_72380046_72380064	0.141734	UAAGACG	AK090370|Rfx7|319758|regulatory factor X, 7	NM_001033536|Rfx7|319758|regulatory factor X, 7	AK144999|Rfx7|319758|regulatory factor X, 7
mm9_v1_chr6_+_70794501_70794578	0.131004	UAAGACG	BC054809|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	NM_010121|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AF076681|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK010397|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK046355|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3
mm9_v1_chr10_+_61595837_61595922	0.130872	UAAGACG	AK008017|Neurog3|11925|neurogenin 3	NM_009719|Neurog3|11925|neurogenin 3	BC104326|Neurog3|11925|neurogenin 3	BC104327|Neurog3|11925|neurogenin 3
mm9_v1_chr17_-_51972514_51972614	0.128402	UAAGACG	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr17_-_63230665_63230665	0.127877	UAAGACG	BC040218|Efna5|13640|ephrin A5	NM_010109|Efna5|13640|ephrin A5	NM_207654|Efna5|13640|ephrin A5
mm9_v1_chr17_-_51971946_51971971	0.126281	UAAGACG	AK088563|Satb1|20230|special AT-rich sequence binding protein 1	AK134040|Satb1|20230|special AT-rich sequence binding protein 1	U05252|Satb1|20230|special AT-rich sequence binding protein 1	AK037740|Satb1|20230|special AT-rich sequence binding protein 1	NM_009122|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chrX_+_10294490_10294637	0.116378	UAAGACG	NM_001166635|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	NM_026524|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK160062|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK090003|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK159166|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK172143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC004014|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC052899|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK151153|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr2_-_168592528_168592700	0.112558	UAAGACG	AY463371|Sall4|99377|sal-like 4 (Drosophila)	AY463372|Sall4|99377|sal-like 4 (Drosophila)	AY463373|Sall4|99377|sal-like 4 (Drosophila)	AK049188|Sall4|99377|sal-like 4 (Drosophila)	AK145388|Sall4|99377|sal-like 4 (Drosophila)	BC099928|Sall4|99377|sal-like 4 (Drosophila)	BC053716|Sall4|99377|sal-like 4 (Drosophila)	NM_175303|Sall4|99377|sal-like 4 (Drosophila)	NM_201395|Sall4|99377|sal-like 4 (Drosophila)	NM_201396|Sall4|99377|sal-like 4 (Drosophila)
mm9_v1_chr2_+_121854287_121854425	0.110657	UAAGACG	AK148004|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK154934|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK161038|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	NM_144545|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	BC080788|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK147154|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK019219|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J
mm9_v1_chr2_-_72817311_72817337	0.108022	UAAGACG	AK088238|Sp3|20687|trans-acting transcription factor 3	NM_001098425|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr9_+_21172314_21172446	0.105739	UAAGACG	AK150276|Ilf3|16201|interleukin enhancer binding factor 3	AK128936|Ilf3|16201|interleukin enhancer binding factor 3	AK048096|Ilf3|16201|interleukin enhancer binding factor 3	AK077560|Ilf3|16201|interleukin enhancer binding factor 3	BC047272|Ilf3|16201|interleukin enhancer binding factor 3	AF497751|Ilf3|16201|interleukin enhancer binding factor 3	AF497752|Ilf3|16201|interleukin enhancer binding factor 3	DQ104405|Ilf3|16201|interleukin enhancer binding factor 3	DQ104406|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042707|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042708|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042709|Ilf3|16201|interleukin enhancer binding factor 3	NM_010561|Ilf3|16201|interleukin enhancer binding factor 3
mm9_v1_chr11_-_66339627_66339627	0.104699	UAAGACG	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr16_-_15594609_15594629	0.103339	UAAGACG	NM_001159351|Ube2v2|70620|ubiquitin-conjugating enzyme E2 variant 2	NM_023585|Ube2v2|70620|ubiquitin-conjugating enzyme E2 variant 2
mm9_v1_chr18_+_37089837_37089938	0.101933	UAAGACG	BC082326|Pcdha1|116731|protocadherin alpha 1	AY013756|Pcdha1|116731|protocadherin alpha 1	NM_054072|Pcdha1|116731|protocadherin alpha 1
mm9_v1_chr4_-_86873866_86873867	0.0930065	UAAGACG	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr8_-_80960532_80960550	0.089022	UAAGACG	S68377|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK084240|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK087546|Pou4f2|18997|POU domain, class 4, transcription factor 2	NM_138944|Pou4f2|18997|POU domain, class 4, transcription factor 2
mm9_v1_chr15_+_58247016_58247063	0.0889346	UAAGACG	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chrX_-_143988623_143988623	0.0848693	UAAGACG	NM_001081173|Lrch2|210297|leucine-rich repeats and calponin homology (CH) domain containing 2
mm9_v1_chrX_+_149574498_149574532	0.0719278	UAAGACG	NM_001004154|Rragb|245670|Ras-related GTP binding B	BC070407|Rragb|245670|Ras-related GTP binding B
mm9_v1_chr17_-_13185043_13185130	0.0713916	UAAGACG	BC046416|Wtap|60532|Wilms' tumour 1-associating protein	BC047338|Wtap|60532|Wilms' tumour 1-associating protein	BC093504|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113532|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113533|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr2_-_37278415_37278506	0.0702307	UAAGACG	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr3_+_41367672_41367775	0.0699505	UAAGACG	NM_001130185|Phf17|269424|PHD finger protein 17
mm9_v1_chr18_+_37170365_37170627	0.0607538	UAAGACG	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr6_-_134516930_134517009	0.0599637	UAAGACG	BC060704|Lrp6|16974|low density lipoprotein receptor-related protein 6	NM_008514|Lrp6|16974|low density lipoprotein receptor-related protein 6
mm9_v1_chrX_+_78315963_78315999	0.0571119	UAAGACG	NM_138751|Tmem47|192216|transmembrane protein 47
mm9_v1_chrX_-_101609169_101609195	0.0452948	UAAGACG	AK151967|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152535|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152816|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152946|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK084853|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK040069|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC151037|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	NM_009592|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC080769|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm9_v1_chr4_-_110024513_110024515	0.0416961	UAAGACG	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr2_-_76820599_76820607	0.0406162	UAAGACG	AK084718|Ttn|22138|titin	AK052859|Ttn|22138|titin	AK084709|Ttn|22138|titin	AK085811|Ttn|22138|titin	AK085832|Ttn|22138|titin	NM_011652|Ttn|22138|titin	NM_028004|Ttn|22138|titin
mm9_v1_chr19_-_41338400_41338559	0.040018	UAAGACG	AF269151|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK075807|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK220279|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK147380|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK147629|Tm9sf3|107358|transmembrane 9 superfamily member 3	NM_133352|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr14_+_69647294_69647485	0.0399098	UAAGACG	AF099098|Stc1|20855|stanniocalcin 1	BC021425|Stc1|20855|stanniocalcin 1	AK134260|Stc1|20855|stanniocalcin 1	NM_009285|Stc1|20855|stanniocalcin 1	AK142220|Stc1|20855|stanniocalcin 1	AK149293|Stc1|20855|stanniocalcin 1	AK149351|Stc1|20855|stanniocalcin 1	AK161960|Stc1|20855|stanniocalcin 1
mm9_v1_chr13_-_48720941_48721032	0.0378447	UAAGACG	BC066081|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	NM_207232|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK132781|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK038922|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK030415|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1
mm9_v1_chr18_-_81183260_81183316	0.0344699	UAAGACG	BC072631|Sall3|20689|sal-like 3 (Drosophila)	NM_178280|Sall3|20689|sal-like 3 (Drosophila)
mm9_v1_chr7_-_128850659_128850766	0.0337419	UAAGACG	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr9_+_122026378_122026421	0.0184377	UAAGACG	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr12_-_32036212_32036317	0.0168624	UAAGACG	AK168875|Dld|13382|dihydrolipoamide dehydrogenase	BC003368|Dld|13382|dihydrolipoamide dehydrogenase	AK135807|Dld|13382|dihydrolipoamide dehydrogenase	AK014092|Dld|13382|dihydrolipoamide dehydrogenase	AK117104|Dld|13382|dihydrolipoamide dehydrogenase	AK136193|Dld|13382|dihydrolipoamide dehydrogenase	AK153399|Dld|13382|dihydrolipoamide dehydrogenase	AK167885|Dld|13382|dihydrolipoamide dehydrogenase	AK168157|Dld|13382|dihydrolipoamide dehydrogenase	NM_007861|Dld|13382|dihydrolipoamide dehydrogenase	U73445|Dld|13382|dihydrolipoamide dehydrogenase
mm9_v1_chr18_-_16967557_16967557	0.0147615	UAAGACG	NM_007664|Cdh2|12558|cadherin 2
mm9_v1_chr9_-_106794266_106794289	0.0091512	UAAGACG	AK167580|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK131997|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	NM_029103|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC022761|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr4_-_129349948_129350020	0.00858776	UAAGACG	AK084212|Kpna6|16650|karyopherin (importin) alpha 6	AK046371|Kpna6|16650|karyopherin (importin) alpha 6	AK154882|Kpna6|16650|karyopherin (importin) alpha 6	NM_008468|Kpna6|16650|karyopherin (importin) alpha 6
mm9_v1_chr6_-_51419881_51419892	0.00661321	UAAGACG	AK049771|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK137214|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_016806|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_182650|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr3_+_41367304_41367502	0.00586383	UAAGACG	NM_172303|Phf17|269424|PHD finger protein 17	BC020316|Phf17|269424|PHD finger protein 17	AK147466|Phf17|269424|PHD finger protein 17
mm9_v1_chr8_-_119256732_119256890	0.00456715	UAAGACG	AY273799|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	AK015452|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	AK142084|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	BC058956|Cdyl2|75796|chromodomain protein, Y chromosome-like 2	NM_029441|Cdyl2|75796|chromodomain protein, Y chromosome-like 2
mm9_v1_chr10_-_58138401_58138443	0.004417	UAAGACG	BC068315|Edar|13608|ectodysplasin-A receptor	AF160502|Edar|13608|ectodysplasin-A receptor	NM_010100|Edar|13608|ectodysplasin-A receptor
mm9_v1_chr1_+_180117547_180117811	0.00291272	UAAGACG	AK029574|Pppde1|78825|PPPDE peptidase domain containing 1	NM_024282|Pppde1|78825|PPPDE peptidase domain containing 1	AK020014|Pppde1|78825|PPPDE peptidase domain containing 1	AK049579|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr14_-_122138082_122138150	0.00268121	UAAGACG	BC158050|Dock9|105445|dedicator of cytokinesis 9	AK122431|Dock9|105445|dedicator of cytokinesis 9	NM_001128307|Dock9|105445|dedicator of cytokinesis 9	NM_001128308|Dock9|105445|dedicator of cytokinesis 9
