mm9_v1_chr2_-_79296732_79296799	36.1801	UAUUGCU	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr11_-_98190774_98191090	31.1462	UAUUGCU	D83507|Neurod2|18013|neurogenic differentiation 2	BC058965|Neurod2|18013|neurogenic differentiation 2	NM_010895|Neurod2|18013|neurogenic differentiation 2	U58471|Neurod2|18013|neurogenic differentiation 2	AK158767|Neurod2|18013|neurogenic differentiation 2
mm9_v1_chr13_-_52626065_52626204	23.9488	UAUUGCU	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr9_+_45178267_45178361	23.6737	UAUUGCU	NM_022004|Fxyd6|59095|FXYD domain-containing ion transport regulator 6
mm9_v1_chr6_-_85283412_85283433	23.2515	UAUUGCU	AK036285|Sfxn5|94282|sideroflexin 5	AK043706|Sfxn5|94282|sideroflexin 5	AK082073|Sfxn5|94282|sideroflexin 5	AK038793|Sfxn5|94282|sideroflexin 5	NM_178639|Sfxn5|94282|sideroflexin 5
mm9_v1_chr8_+_24780132_24780145	23.0217	UAUUGCU	AK140391|Zmat4|320158|zinc finger, matrin type 4	AK140413|Zmat4|320158|zinc finger, matrin type 4	NM_177086|Zmat4|320158|zinc finger, matrin type 4	AK036254|Zmat4|320158|zinc finger, matrin type 4	AK134793|Zmat4|320158|zinc finger, matrin type 4	BC065110|Zmat4|320158|zinc finger, matrin type 4	BC079657|Zmat4|320158|zinc finger, matrin type 4
mm9_v1_chr4_-_82151180_82151288	20.8314	UAUUGCU	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr1_+_179374783_179374796	20.4907	UAUUGCU	BC089333|Zfp238|30928|zinc finger protein 238	NM_001012330|Zfp238|30928|zinc finger protein 238
mm9_v1_chr1_+_145487825_145487990	20.0428	UAUUGCU	AK036141|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	NM_020025|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK034371|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK083168|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK080106|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	BC046322|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm9_v1_chr4_+_97248556_97248685	19.5111	UAUUGCU	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr1_+_189821727_189821874	18.1241	UAUUGCU	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr2_-_154384574_154384627	17.6229	UAUUGCU	AK044296|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK013520|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK158225|Necab3|56846|N-terminal EF-hand calcium binding protein 3	NM_021546|Necab3|56846|N-terminal EF-hand calcium binding protein 3
mm9_v1_chr2_+_158492854_158492905	17.027	UAUUGCU	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr11_-_3763899_3763908	16.7466	UAUUGCU	AK049816|Osbp2|74309|oxysterol binding protein 2	NM_152818|Osbp2|74309|oxysterol binding protein 2
mm9_v1_chr7_-_148615247_148615354	16.7347	UAUUGCU	AF243130|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK005092|Cend1|57754|cell cycle exit and neuronal differentiation 1	BC023032|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK079045|Cend1|57754|cell cycle exit and neuronal differentiation 1	NM_021316|Cend1|57754|cell cycle exit and neuronal differentiation 1
mm9_v1_chr14_-_103381744_103381856	16.116	UAUUGCU	BC116647|Kctd12|239217|potassium channel tetramerisation domain containing 12	BC116648|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK035535|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK172581|Kctd12|239217|potassium channel tetramerisation domain containing 12	NM_177715|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK087895|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr18_+_38115192_38115292	15.9233	UAUUGCU	NM_153793|Rell2|225392|RELT-like 2	AK044097|Rell2|225392|RELT-like 2	BC038500|Rell2|225392|RELT-like 2
mm9_v1_chr19_+_28909559_28909655	15.4826	UAUUGCU	AK018188|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK045632|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK051428|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK083097|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC065099|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC064797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	D43797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	NM_009199|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	U73521|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm9_v1_chr16_-_67621054_67621188	15.2741	UAUUGCU	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr2_-_77654669_77654872	14.6716	UAUUGCU	AK079322|Zfp385b|241494|zinc finger protein 385B	AK149352|Zfp385b|241494|zinc finger protein 385B	AK046798|Zfp385b|241494|zinc finger protein 385B	NM_178723|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr7_+_146574969_146575035	14.5858	UAUUGCU	BC056341|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_001127363|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_183144|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK083449|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171360|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171880|Inpp5a|212111|inositol polyphosphate-5-phosphatase A
mm9_v1_chr14_+_70930491_70930682	14.3927	UAUUGCU	AK087125|Lgi3|213469|leucine-rich repeat LGI family, member 3	NM_145219|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK132296|Lgi3|213469|leucine-rich repeat LGI family, member 3	AF515590|Lgi3|213469|leucine-rich repeat LGI family, member 3	AY174077|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK049831|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK163664|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK047495|Lgi3|213469|leucine-rich repeat LGI family, member 3
mm9_v1_chr17_+_70871444_70871503	14.33	UAUUGCU	NM_001128180|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK161941|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK163689|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr9_-_65427840_65427883	14.2954	UAUUGCU	BC028908|Plekho2|102595|pleckstrin homology domain containing, family O member 2	NM_153119|Plekho2|102595|pleckstrin homology domain containing, family O member 2	AK170479|Plekho2|102595|pleckstrin homology domain containing, family O member 2	AK028069|Plekho2|102595|pleckstrin homology domain containing, family O member 2
mm9_v1_chr7_-_134968017_134968064	14.1301	UAUUGCU	NM_024414|Stx1b|56216|syntaxin 1B
mm9_v1_chr3_+_95985065_95985205	14.017	UAUUGCU	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr7_+_51846254_51846289	13.8933	UAUUGCU	NM_008422|Kcnc3|16504|potassium voltage gated channel, Shaw-related subfamily, member 3
mm9_v1_chr5_+_107926763_107926815	13.6998	UAUUGCU	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr6_+_88674398_88674540	13.5431	UAUUGCU	NM_001166249|Mgll|23945|monoglyceride lipase	NM_011844|Mgll|23945|monoglyceride lipase	AK131645|Mgll|23945|monoglyceride lipase	AK028008|Mgll|23945|monoglyceride lipase	AK148242|Mgll|23945|monoglyceride lipase	AK148395|Mgll|23945|monoglyceride lipase	AJ001118|Mgll|23945|monoglyceride lipase	BC057965|Mgll|23945|monoglyceride lipase	AK215869|Mgll|23945|monoglyceride lipase	AK185666|Mgll|23945|monoglyceride lipase	AK188627|Mgll|23945|monoglyceride lipase	AK206822|Mgll|23945|monoglyceride lipase	AK208240|Mgll|23945|monoglyceride lipase	AK211363|Mgll|23945|monoglyceride lipase
mm9_v1_chr1_-_134603848_134603902	13.419	UAUUGCU	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr11_+_6963421_6963491	12.9106	UAUUGCU	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr18_-_33623287_33623340	12.7206	UAUUGCU	NM_053078|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr15_-_48623520_48623540	12.6498	UAUUGCU	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr3_+_31048841_31049071	12.2911	UAUUGCU	NM_008770|Cldn11|18417|claudin 11	AK005088|Cldn11|18417|claudin 11	AK005171|Cldn11|18417|claudin 11	AK161698|Cldn11|18417|claudin 11	BC021659|Cldn11|18417|claudin 11	U19582|Cldn11|18417|claudin 11	AF124426|Cldn11|18417|claudin 11
mm9_v1_chr11_+_54911540_54911679	11.9241	UAUUGCU	AK149642|Gm2a|14667|GM2 ganglioside activator protein	AK152256|Gm2a|14667|GM2 ganglioside activator protein	U09816|Gm2a|14667|GM2 ganglioside activator protein	BC004651|Gm2a|14667|GM2 ganglioside activator protein	NM_010299|Gm2a|14667|GM2 ganglioside activator protein	L19526|Gm2a|14667|GM2 ganglioside activator protein	CT010289|Gm2a|14667|GM2 ganglioside activator protein	AK179394|Gm2a|14667|GM2 ganglioside activator protein	AK181597|Gm2a|14667|GM2 ganglioside activator protein
mm9_v1_chr3_-_36589048_36589088	11.9052	UAUUGCU	AK082063|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK080619|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK032317|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	NM_019510|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3
mm9_v1_chr2_-_7002344_7002370	11.7142	UAUUGCU	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr15_+_82105322_82105458	11.569	UAUUGCU	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr3_-_80717517_80717574	11.2116	UAUUGCU	BC027094|Glrb|14658|glycine receptor, beta subunit	BC037605|Glrb|14658|glycine receptor, beta subunit	NM_010298|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr18_+_69504145_69504185	11.1098	UAUUGCU	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr4_+_97444312_97444317	11.1039	UAUUGCU	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr4_-_86876328_86876443	11.0618	UAUUGCU	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr13_-_105844882_105845009	10.922	UAUUGCU	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr15_+_81767188_81767324	10.9115	UAUUGCU	NM_145473|Csdc2|105859|cold shock domain containing C2, RNA binding	AK132493|Csdc2|105859|cold shock domain containing C2, RNA binding	AK028916|Csdc2|105859|cold shock domain containing C2, RNA binding
mm9_v1_chr16_-_37385024_37385045	10.863	UAUUGCU	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr6_+_88674697_88674748	10.8145	UAUUGCU	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr8_-_17535279_17535384	10.703	UAUUGCU	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr4_-_136512727_136512761	10.657	UAUUGCU	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr2_+_134611879_134611910	10.1151	UAUUGCU	AK143153|Plcb1|18795|phospholipase C, beta 1	NM_001145830|Plcb1|18795|phospholipase C, beta 1	NM_019677|Plcb1|18795|phospholipase C, beta 1	AK040911|Plcb1|18795|phospholipase C, beta 1
mm9_v1_chr12_+_3806955_3807159	9.91961	UAUUGCU	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr11_-_64976408_64976473	9.87591	UAUUGCU	BC056366|Arhgap44|216831|Rho GTPase activating protein 44	BC059911|Arhgap44|216831|Rho GTPase activating protein 44	NM_001099288|Arhgap44|216831|Rho GTPase activating protein 44	NM_175003|Arhgap44|216831|Rho GTPase activating protein 44
mm9_v1_chr2_-_130468507_130468540	9.66254	UAUUGCU	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr5_-_121038602_121038704	9.55243	UAUUGCU	AK037856|Tpcn1|252972|two pore channel 1	AK077411|Tpcn1|252972|two pore channel 1	BC058951|Tpcn1|252972|two pore channel 1	NM_145853|Tpcn1|252972|two pore channel 1	AF217002|Tpcn1|252972|two pore channel 1	AK148129|Tpcn1|252972|two pore channel 1
mm9_v1_chr3_-_81949667_81949798	9.52687	UAUUGCU	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr4_-_25727109_25727390	9.51436	UAUUGCU	AK049122|Fut9|14348|fucosyltransferase 9	NM_010243|Fut9|14348|fucosyltransferase 9	AK032177|Fut9|14348|fucosyltransferase 9	AK139133|Fut9|14348|fucosyltransferase 9	AK033607|Fut9|14348|fucosyltransferase 9
mm9_v1_chr5_+_130924661_130924722	9.4106	UAUUGCU	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr15_+_40486577_40486623	9.33454	UAUUGCU	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr1_+_155500166_155500298	9.27868	UAUUGCU	NM_026380|Rgs8|67792|regulator of G-protein signaling 8	BC065056|Rgs8|67792|regulator of G-protein signaling 8	AK044337|Rgs8|67792|regulator of G-protein signaling 8	AK142301|Rgs8|67792|regulator of G-protein signaling 8
mm9_v1_chr10_+_21714471_21714488	9.27557	UAUUGCU	NM_011361|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK086892|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK146037|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK159131|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr17_+_8476638_8476687	9.23535	UAUUGCU	AK170514|Brp44l|55951|brain protein 44-like	BC103767|Brp44l|55951|brain protein 44-like	AK002241|Brp44l|55951|brain protein 44-like	AK013391|Brp44l|55951|brain protein 44-like	NM_018819|Brp44l|55951|brain protein 44-like	AK005348|Brp44l|55951|brain protein 44-like
mm9_v1_chr6_+_115084919_115085009	9.18732	UAUUGCU	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr15_+_41278949_41279049	9.16788	UAUUGCU	NM_001130166|Oxr1|170719|oxidation resistance 1	AK158703|Oxr1|170719|oxidation resistance 1
mm9_v1_chr10_-_108447674_108447736	9.07804	UAUUGCU	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr11_-_90252228_90252237	8.84521	UAUUGCU	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr2_+_35477498_35477550	8.81086	UAUUGCU	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr12_+_103793130_103793206	8.75955	UAUUGCU	M64278|Chga|12652|chromogranin A	NM_007693|Chga|12652|chromogranin A	AK144504|Chga|12652|chromogranin A	BC026554|Chga|12652|chromogranin A
mm9_v1_chr3_+_84756090_84756352	8.72809	UAUUGCU	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr1_-_166388431_166388540	8.54198	UAUUGCU	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr9_-_108092712_108092716	8.54193	UAUUGCU	NM_007567|Bsn|12217|bassoon
mm9_v1_chr9_+_21001148_21001171	8.46483	UAUUGCU	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr5_-_90312358_90312358	8.44374	UAUUGCU	AK031900|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_001081401|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_177872|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm9_v1_chr3_-_9833502_9833678	8.43964	UAUUGCU	BC145328|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	BC145761|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	BC145763|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK172106|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK156986|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK040230|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK041695|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK089329|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	AK156000|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	NM_001195031|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1	NM_053182|Pag1|94212|phosphoprotein associated with glycosphingolipid microdomains 1
mm9_v1_chr6_+_117118552_117118673	8.42645	UAUUGCU	NM_001012477|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_013655|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_021704|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK157553|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK045092|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK075596|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43804|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43805|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12029|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12030|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC046827|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC006640|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC020297|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC029335|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D21072|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	S74318|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	CT010389|Cxcl12|20315|chemokine (C-X-C motif) ligand 12
mm9_v1_chr6_+_90412566_90412633	8.20071	UAUUGCU	AK138824|Klf15|66277|Kruppel-like factor 15	AK142618|Klf15|66277|Kruppel-like factor 15	AK009739|Klf15|66277|Kruppel-like factor 15	NM_023184|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr14_-_32249046_32249246	8.08663	UAUUGCU	AB016835|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	BC053741|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	NM_011894|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)
mm9_v1_chr13_-_112599181_112599204	7.97997	UAUUGCU	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr12_-_80108263_80108327	7.96014	UAUUGCU	BC066067|Tmem229b|268567|transmembrane protein 229B	NM_178745|Tmem229b|268567|transmembrane protein 229B	AK033403|Tmem229b|268567|transmembrane protein 229B	AK053623|Tmem229b|268567|transmembrane protein 229B
mm9_v1_chr8_+_74842931_74842964	7.89396	UAUUGCU	U25096|Klf2|16598|Kruppel-like factor 2 (lung)	BC138737|Klf2|16598|Kruppel-like factor 2 (lung)	BC138738|Klf2|16598|Kruppel-like factor 2 (lung)	AK131962|Klf2|16598|Kruppel-like factor 2 (lung)	NM_008452|Klf2|16598|Kruppel-like factor 2 (lung)
mm9_v1_chr18_+_58038278_58038331	7.84597	UAUUGCU	NM_009194|Slc12a2|20496|solute carrier family 12, member 2	U13174|Slc12a2|20496|solute carrier family 12, member 2
mm9_v1_chr14_+_45970767_45970937	7.83584	UAUUGCU	AK154136|Styx|56291|serine/threonine/tyrosine interaction protein	AK030122|Styx|56291|serine/threonine/tyrosine interaction protein	BC096674|Styx|56291|serine/threonine/tyrosine interaction protein	NM_019637|Styx|56291|serine/threonine/tyrosine interaction protein	AK166043|Styx|56291|serine/threonine/tyrosine interaction protein	AK046970|Styx|56291|serine/threonine/tyrosine interaction protein	AK042741|Styx|56291|serine/threonine/tyrosine interaction protein	U34973|Styx|56291|serine/threonine/tyrosine interaction protein	BC038608|Styx|56291|serine/threonine/tyrosine interaction protein	BC085089|Styx|56291|serine/threonine/tyrosine interaction protein	AK002822|Styx|56291|serine/threonine/tyrosine interaction protein
mm9_v1_chr14_-_56519012_56519108	7.79905	UAUUGCU	AK009339|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	BC087941|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	AK049709|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	NM_001082975|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1
mm9_v1_chr18_+_86564229_86564343	7.76358	UAUUGCU	AK081325|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1	NM_144946|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1
mm9_v1_chr2_+_149656518_149656618	7.48503	UAUUGCU	NM_001085521|Tmem90b|433485|transmembrane protein 90B
mm9_v1_chr11_+_56825192_56825257	7.39071	UAUUGCU	NM_001113325|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	NM_008165|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr7_-_31911884_31911980	7.27702	UAUUGCU	BC009652|Scn1b|20266|sodium channel, voltage-gated, type I, beta	NM_011322|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr2_+_21289168_21289199	7.23588	UAUUGCU	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr10_-_80488111_80488155	7.18916	UAUUGCU	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chr17_+_42452895_42453084	6.87529	UAUUGCU	NM_028474|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	AK014270|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	BC145294|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene
mm9_v1_chr13_-_12199109_12199211	6.8399	UAUUGCU	BC043140|Ryr2|20191|ryanodine receptor 2, cardiac	BC059061|Ryr2|20191|ryanodine receptor 2, cardiac	NM_023868|Ryr2|20191|ryanodine receptor 2, cardiac
mm9_v1_chr10_-_67011689_67011747	6.71741	UAUUGCU	BC057106|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	BC058407|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	AK155334|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	NM_001005419|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase
mm9_v1_chr9_+_45238375_45238483	6.71031	UAUUGCU	NM_001081270|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AK147531|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487345|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487347|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1
mm9_v1_chr7_+_107855215_107855319	6.69033	UAUUGCU	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr9_-_86775154_86775279	6.66867	UAUUGCU	M83985|Snap91|20616|synaptosomal-associated protein 91	NM_013669|Snap91|20616|synaptosomal-associated protein 91	BC031773|Snap91|20616|synaptosomal-associated protein 91	AK159570|Snap91|20616|synaptosomal-associated protein 91	AK147087|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chrX_-_154036606_154036649	6.57495	UAUUGCU	AK148325|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2	NM_172307|Mbtps2|270669|membrane-bound transcription factor peptidase, site 2
mm9_v1_chr9_+_113721698_113721717	6.55287	UAUUGCU	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr15_+_88890140_88890179	6.32773	UAUUGCU	NM_001002005|Panx2|406218|pannexin 2	EU446266|Panx2|406218|pannexin 2
mm9_v1_chr16_+_13986691_13986753	6.29555	UAUUGCU	AK049997|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK076136|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK139470|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK136859|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	NM_144518|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK019307|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	BC022741|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK035868|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene
mm9_v1_chr6_-_24905939_24906124	6.25759	UAUUGCU	BC147241|Tmem229a|319832|transmembrane protein 229A	BC147242|Tmem229a|319832|transmembrane protein 229A	AK140056|Tmem229a|319832|transmembrane protein 229A	AK087465|Tmem229a|319832|transmembrane protein 229A	NM_177013|Tmem229a|319832|transmembrane protein 229A
mm9_v1_chr15_-_103170514_103170552	6.15942	UAUUGCU	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr9_-_4796141_4796273	6.11141	UAUUGCU	BC060697|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK031568|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK047179|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK032103|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113180|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113181|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_019691|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm9_v1_chr9_-_83040061_83040223	6.10998	UAUUGCU	AK002970|Hmgn3|94353|high mobility group nucleosomal binding domain 3	BC005693|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK003272|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK153223|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_026122|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_175074|Hmgn3|94353|high mobility group nucleosomal binding domain 3
mm9_v1_chr6_-_22306070_22306242	6.07755	UAUUGCU	AY424275|Fam3c|27999|family with sequence similarity 3, member C	BC009086|Fam3c|27999|family with sequence similarity 3, member C	NM_138587|Fam3c|27999|family with sequence similarity 3, member C	BC055853|Fam3c|27999|family with sequence similarity 3, member C	AK154498|Fam3c|27999|family with sequence similarity 3, member C	AK170887|Fam3c|27999|family with sequence similarity 3, member C	BC069880|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr8_+_127316918_127316991	5.9991	UAUUGCU	AK051455|Trim67|330863|tripartite motif-containing 67	NM_198632|Trim67|330863|tripartite motif-containing 67	BC094596|Trim67|330863|tripartite motif-containing 67
mm9_v1_chr3_-_55987612_55987634	5.97451	UAUUGCU	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr5_-_115140869_115140951	5.96634	UAUUGCU	AF209703|Gltp|56356|glycolipid transfer protein	BC053729|Gltp|56356|glycolipid transfer protein	AK157313|Gltp|56356|glycolipid transfer protein	BC016584|Gltp|56356|glycolipid transfer protein	NM_019821|Gltp|56356|glycolipid transfer protein
mm9_v1_chr4_-_36898776_36898811	5.95767	UAUUGCU	AK043936|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK139458|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001165999|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr16_-_22657283_22657317	5.8067	UAUUGCU	AK083258|Dgkg|110197|diacylglycerol kinase, gamma	NM_138650|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr16_+_11984205_11984205	5.76416	UAUUGCU	AK012380|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_001174086|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_028277|Shisa9|72555|shisa homolog 9 (Xenopus laevis)
mm9_v1_chr9_+_64233432_64233531	5.74834	UAUUGCU	NM_001134399|Megf11|214058|multiple EGF-like-domains 11	NM_172522|Megf11|214058|multiple EGF-like-domains 11	AK048840|Megf11|214058|multiple EGF-like-domains 11	AK122555|Megf11|214058|multiple EGF-like-domains 11	AK051642|Megf11|214058|multiple EGF-like-domains 11	BC151157|Megf11|214058|multiple EGF-like-domains 11	BC172024|Megf11|214058|multiple EGF-like-domains 11
mm9_v1_chr11_-_29925939_29926032	5.65029	UAUUGCU	AK049034|Eml6|237711|echinoderm microtubule associated protein like 6	NM_146016|Eml6|237711|echinoderm microtubule associated protein like 6
mm9_v1_chr17_-_84587278_84587289	5.54491	UAUUGCU	AK159513|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK160955|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK170763|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	NM_001001806|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr7_+_28376578_28376874	5.53102	UAUUGCU	AK158792|Akt2|11652|thymoma viral proto-oncogene 2	NM_001110208|Akt2|11652|thymoma viral proto-oncogene 2	AK144217|Akt2|11652|thymoma viral proto-oncogene 2	U22445|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr4_+_128814102_128814307	5.49852	UAUUGCU	AK005096|Fndc5|384061|fibronectin type III domain containing 5	AJ401376|Fndc5|384061|fibronectin type III domain containing 5	BC109184|Fndc5|384061|fibronectin type III domain containing 5	NM_027402|Fndc5|384061|fibronectin type III domain containing 5	BC109183|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr8_+_46970814_46970842	5.44994	UAUUGCU	AF002283|Pdlim3|53318|PDZ and LIM domain 3	NM_016798|Pdlim3|53318|PDZ and LIM domain 3	AK078421|Pdlim3|53318|PDZ and LIM domain 3	AK141331|Pdlim3|53318|PDZ and LIM domain 3	AK164054|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr2_-_6805937_6806041	5.43763	UAUUGCU	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chrX_+_138662725_138662809	5.39923	UAUUGCU	NM_172782|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK144349|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC064727|Nxt2|237082|nuclear transport factor 2-like export factor 2	AK032102|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC068166|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC118503|Nxt2|237082|nuclear transport factor 2-like export factor 2	BC094570|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chrX_+_143397055_143397188	5.32643	UAUUGCU	AK034512|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK043320|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK079648|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK139392|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	NM_008312|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK086348|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	BC098327|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	M63685|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	X72230|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C
mm9_v1_chr5_-_115223373_115223529	5.24474	UAUUGCU	AF148693|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK005365|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK017943|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC043062|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC056993|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077360|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_019834|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK220323|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077359|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK148029|Git2|26431|G protein-coupled receptor kinase-interactor 2
mm9_v1_chr5_+_98683202_98683430	5.21457	UAUUGCU	AK028894|Fgf5|14176|fibroblast growth factor 5	NM_010203|Fgf5|14176|fibroblast growth factor 5	BC071227|Fgf5|14176|fibroblast growth factor 5	AK028694|Fgf5|14176|fibroblast growth factor 5	AB016516|Fgf5|14176|fibroblast growth factor 5	M30643|Fgf5|14176|fibroblast growth factor 5
mm9_v1_chr5_-_64360058_64360140	5.20332	UAUUGCU	AK133845|Rell1|100532|RELT-like 1	AK159944|Rell1|100532|RELT-like 1	AK161061|Rell1|100532|RELT-like 1	BC031198|Rell1|100532|RELT-like 1	BC066137|Rell1|100532|RELT-like 1	BC066160|Rell1|100532|RELT-like 1	AK140108|Rell1|100532|RELT-like 1	NM_145923|Rell1|100532|RELT-like 1
mm9_v1_chr15_+_100701068_100701116	4.98121	UAUUGCU	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chrX_+_70918446_70918580	4.93479	UAUUGCU	NM_001142809|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	NM_001142810|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	NM_133987|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	AF459435|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	BC141067|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	BC145319|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm9_v1_chr14_+_18493380_18493473	4.87938	UAUUGCU	AK158826|Thrb|21834|thyroid hormone receptor beta	NM_001113417|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr5_-_69732915_69732947	4.86579	UAUUGCU	AK039167|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK043351|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK047519|Kctd8|243043|potassium channel tetramerisation domain containing 8	AY615967|Kctd8|243043|potassium channel tetramerisation domain containing 8	NM_175519|Kctd8|243043|potassium channel tetramerisation domain containing 8
mm9_v1_chr11_+_116780161_116780176	4.82449	UAUUGCU	BC063084|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	BC094604|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	NM_172948|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm9_v1_chr15_-_81846328_81846578	4.81674	UAUUGCU	AK189878|Pppde2|28075|PPPDE peptidase domain containing 2	BC071205|Pppde2|28075|PPPDE peptidase domain containing 2	BC131979|Pppde2|28075|PPPDE peptidase domain containing 2	BC132642|Pppde2|28075|PPPDE peptidase domain containing 2	BC145235|Pppde2|28075|PPPDE peptidase domain containing 2	AK016347|Pppde2|28075|PPPDE peptidase domain containing 2	AK131703|Pppde2|28075|PPPDE peptidase domain containing 2	AK005963|Pppde2|28075|PPPDE peptidase domain containing 2	AK005706|Pppde2|28075|PPPDE peptidase domain containing 2	BC056972|Pppde2|28075|PPPDE peptidase domain containing 2	NM_134095|Pppde2|28075|PPPDE peptidase domain containing 2
mm9_v1_chr18_-_33623069_33623089	4.74477	UAUUGCU	BC054762|D0H4S114|27528|DNA segment, human D4S114	NM_001109990|D0H4S114|27528|DNA segment, human D4S114	X70398|D0H4S114|27528|DNA segment, human D4S114	AK048361|D0H4S114|27528|DNA segment, human D4S114	AK081502|D0H4S114|27528|DNA segment, human D4S114	AK133769|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr5_+_130845319_130845359	4.73139	UAUUGCU	NM_181045|Caln1|140904|calneuron 1	AF282251|Caln1|140904|calneuron 1	AK035865|Caln1|140904|calneuron 1
mm9_v1_chr15_+_78939343_78939412	4.72828	UAUUGCU	AK147646|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1	AK147587|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1	NM_177461|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1
mm9_v1_chr2_+_172171015_172171168	4.69552	UAUUGCU	AK160529|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	NM_025912|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	BC016210|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	BC057642|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK147935|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK084415|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK148213|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK076087|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK008190|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK148334|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK148435|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK149497|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene
mm9_v1_chr11_+_54251680_54251744	4.54286	UAUUGCU	NM_173753|Fnip1|216742|folliculin interacting protein 1	BC079892|Fnip1|216742|folliculin interacting protein 1	AK122574|Fnip1|216742|folliculin interacting protein 1
mm9_v1_chr6_+_122824491_122824588	4.50561	UAUUGCU	BC119133|Necap1|67602|NECAP endocytosis associated 1	BC120841|Necap1|67602|NECAP endocytosis associated 1	AK004805|Necap1|67602|NECAP endocytosis associated 1	AK081598|Necap1|67602|NECAP endocytosis associated 1	AK168500|Necap1|67602|NECAP endocytosis associated 1	NM_026267|Necap1|67602|NECAP endocytosis associated 1	BC011466|Necap1|67602|NECAP endocytosis associated 1	AK005263|Necap1|67602|NECAP endocytosis associated 1	BC098227|Necap1|67602|NECAP endocytosis associated 1	AK220236|Necap1|67602|NECAP endocytosis associated 1
mm9_v1_chr5_+_75971011_75971052	4.47851	UAUUGCU	NM_001122733|Kit|16590|kit oncogene	NM_021099|Kit|16590|kit oncogene	AK046795|Kit|16590|kit oncogene	AK047010|Kit|16590|kit oncogene	BC026713|Kit|16590|kit oncogene	BC075716|Kit|16590|kit oncogene	BC052457|Kit|16590|kit oncogene	Y00864|Kit|16590|kit oncogene	AY536430|Kit|16590|kit oncogene	AY536431|Kit|16590|kit oncogene
mm9_v1_chr5_-_93635416_93635523	4.4225	UAUUGCU	AK177544|Ccni|12453|cyclin I	AK079476|Ccni|12453|cyclin I	AK152614|Ccni|12453|cyclin I	AK050465|Ccni|12453|cyclin I	NM_017367|Ccni|12453|cyclin I
mm9_v1_chr1_+_63492447_63492511	4.34854	UAUUGCU	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr18_-_80904852_80904931	4.33876	UAUUGCU	EU887569|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	EU887571|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	EU887572|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AF049606|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK004810|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164111|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164112|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_016791|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
mm9_v1_chr15_+_80541675_80541764	4.27895	UAUUGCU	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr7_+_114514258_114514338	4.25256	UAUUGCU	AK089115|Syt9|60510|synaptotagmin IX	NM_021889|Syt9|60510|synaptotagmin IX	AK156631|Syt9|60510|synaptotagmin IX	BC132495|Syt9|60510|synaptotagmin IX	BC137904|Syt9|60510|synaptotagmin IX	BC145024|Syt9|60510|synaptotagmin IX
mm9_v1_chr9_-_52487410_52487541	4.23686	UAUUGCU	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr17_-_24787217_24787278	4.23444	UAUUGCU	AB026489|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	BC070458|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK169007|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK170057|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK039491|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK004710|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075800|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075813|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK084801|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023055|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr5_+_151062363_151062504	4.22003	UAUUGCU	NM_172887|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr1_+_185858324_185858355	4.19313	UAUUGCU	BC025066|Dusp10|63953|dual specificity phosphatase 10	AB037908|Dusp10|63953|dual specificity phosphatase 10	AK142568|Dusp10|63953|dual specificity phosphatase 10	AK088186|Dusp10|63953|dual specificity phosphatase 10	NM_022019|Dusp10|63953|dual specificity phosphatase 10	AK035293|Dusp10|63953|dual specificity phosphatase 10	AK050528|Dusp10|63953|dual specificity phosphatase 10	AK088357|Dusp10|63953|dual specificity phosphatase 10	AK088024|Dusp10|63953|dual specificity phosphatase 10	AK011995|Dusp10|63953|dual specificity phosphatase 10
mm9_v1_chr19_+_4855128_4855169	4.13179	UAUUGCU	NM_019861|Ctsf|56464|cathepsin F	AK165416|Ctsf|56464|cathepsin F
mm9_v1_chr17_-_66426361_66426428	4.11148	UAUUGCU	AK153850|Ankrd12|106585|ankyrin repeat domain 12	BC094292|Ankrd12|106585|ankyrin repeat domain 12	BC050185|Ankrd12|106585|ankyrin repeat domain 12	BC080825|Ankrd12|106585|ankyrin repeat domain 12	BC064777|Ankrd12|106585|ankyrin repeat domain 12	AK012645|Ankrd12|106585|ankyrin repeat domain 12	AK133715|Ankrd12|106585|ankyrin repeat domain 12	NM_001025572|Ankrd12|106585|ankyrin repeat domain 12	AK013457|Ankrd12|106585|ankyrin repeat domain 12
mm9_v1_chr11_-_94335350_94335511	4.01229	UAUUGCU	BC057399|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001112813|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177888|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177890|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_009783|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm9_v1_chr8_+_107064705_107064811	4.00782	UAUUGCU	AK090390|Car7|12354|carbonic anhydrase 7	AY075021|Car7|12354|carbonic anhydrase 7	NM_053070|Car7|12354|carbonic anhydrase 7	BC094913|Car7|12354|carbonic anhydrase 7	AF291660|Car7|12354|carbonic anhydrase 7
mm9_v1_chr3_+_55046447_55046542	3.89006	UAUUGCU	AK147831|Dclk1|13175|doublecortin-like kinase 1	NM_001111053|Dclk1|13175|doublecortin-like kinase 1	NM_001195538|Dclk1|13175|doublecortin-like kinase 1	NM_019978|Dclk1|13175|doublecortin-like kinase 1	AB093234|Dclk1|13175|doublecortin-like kinase 1	AK164993|Dclk1|13175|doublecortin-like kinase 1	AF155820|Dclk1|13175|doublecortin-like kinase 1	BC064783|Dclk1|13175|doublecortin-like kinase 1	BC021354|Dclk1|13175|doublecortin-like kinase 1	AK043874|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr19_+_43764161_43764183	3.85451	UAUUGCU	AK170546|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	NM_053103|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr5_+_134575561_134575653	3.8492	UAUUGCU	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr7_-_17509228_17509415	3.78259	UAUUGCU	AK169630|Calm3|12315|calmodulin 3	BC050926|Calm3|12315|calmodulin 3	M19380|Calm3|12315|calmodulin 3	AK165568|Calm3|12315|calmodulin 3	AK153179|Calm3|12315|calmodulin 3	AK152754|Calm3|12315|calmodulin 3	AK151610|Calm3|12315|calmodulin 3	NM_007590|Calm3|12315|calmodulin 3
mm9_v1_chr9_+_30838224_30838249	3.76242	UAUUGCU	AK036895|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_001115130|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_172765|Zbtb44|235132|zinc finger and BTB domain containing 44
mm9_v1_chr7_-_87547589_87547748	3.75519	UAUUGCU	L26489|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_011046|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr5_+_115956682_115956792	3.75193	UAUUGCU	AK171226|Pxn|19303|paxillin	AK148060|Pxn|19303|paxillin	NM_011223|Pxn|19303|paxillin	NM_133915|Pxn|19303|paxillin	AK149933|Pxn|19303|paxillin	AK171436|Pxn|19303|paxillin	BC025493|Pxn|19303|paxillin	AK167299|Pxn|19303|paxillin	AF293882|Pxn|19303|paxillin
mm9_v1_chr16_+_33380860_33381006	3.75028	UAUUGCU	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr11_+_19824417_19824473	3.74852	UAUUGCU	AK153700|Spred2|114716|sprouty-related, EVH1 domain containing 2	AK036430|Spred2|114716|sprouty-related, EVH1 domain containing 2	NM_033523|Spred2|114716|sprouty-related, EVH1 domain containing 2	AK157817|Spred2|114716|sprouty-related, EVH1 domain containing 2
mm9_v1_chr11_-_95926589_95926740	3.67471	UAUUGCU	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr4_-_9570815_9570863	3.66326	UAUUGCU	AF302654|Asph|65973|aspartate-beta-hydroxylase	AF289490|Asph|65973|aspartate-beta-hydroxylase	AF289491|Asph|65973|aspartate-beta-hydroxylase	AF289492|Asph|65973|aspartate-beta-hydroxylase	AF221854|Asph|65973|aspartate-beta-hydroxylase	AF223413|Asph|65973|aspartate-beta-hydroxylase	NM_001177852|Asph|65973|aspartate-beta-hydroxylase	NM_001177853|Asph|65973|aspartate-beta-hydroxylase	NM_001177854|Asph|65973|aspartate-beta-hydroxylase	NM_133723|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr7_+_149135647_149135669	3.65806	UAUUGCU	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr9_+_122026378_122026421	3.60669	UAUUGCU	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr15_-_90509751_90509818	3.58607	UAUUGCU	AK005311|Cpne8|66871|copine VIII	BC076564|Cpne8|66871|copine VIII	BC017626|Cpne8|66871|copine VIII	AK013407|Cpne8|66871|copine VIII	AK004559|Cpne8|66871|copine VIII	BC138745|Cpne8|66871|copine VIII	BC138746|Cpne8|66871|copine VIII	AK010227|Cpne8|66871|copine VIII	BC048551|Cpne8|66871|copine VIII	NM_001033851|Cpne8|66871|copine VIII	NM_025815|Cpne8|66871|copine VIII
mm9_v1_chr10_-_126648509_126648683	3.54506	UAUUGCU	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr1_-_24594228_24594275	3.4176	UAUUGCU	BC118970|Col19a1|12823|collagen, type XIX, alpha 1	AB000636|Col19a1|12823|collagen, type XIX, alpha 1	AK149136|Col19a1|12823|collagen, type XIX, alpha 1	NM_007733|Col19a1|12823|collagen, type XIX, alpha 1
mm9_v1_chr7_+_28390872_28390878	3.40508	UAUUGCU	BC026151|Akt2|11652|thymoma viral proto-oncogene 2	NM_007434|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr12_+_87087488_87087539	3.39131	UAUUGCU	AY260574|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260575|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260576|Mfsd7c|217721|major facilitator superfamily domain containing 7C	BC011209|Mfsd7c|217721|major facilitator superfamily domain containing 7C	NM_145447|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AK145696|Mfsd7c|217721|major facilitator superfamily domain containing 7C
mm9_v1_chr1_-_72921438_72921462	3.36521	UAUUGCU	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr10_-_89083993_89083997	3.36034	UAUUGCU	NM_182959|Slc17a8|216227|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	BC042593|Slc17a8|216227|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
mm9_v1_chr16_-_91011339_91011552	3.31883	UAUUGCU	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr11_+_75345164_75345232	3.3105	UAUUGCU	AB120363|Slc43a2|215113|solute carrier family 43, member 2	BC042513|Slc43a2|215113|solute carrier family 43, member 2	NM_173388|Slc43a2|215113|solute carrier family 43, member 2
mm9_v1_chr7_-_112781902_112782053	3.25097	UAUUGCU	BC003347|Trim3|55992|tripartite motif-containing 3	AF220019|Trim3|55992|tripartite motif-containing 3	AK144674|Trim3|55992|tripartite motif-containing 3	NM_018880|Trim3|55992|tripartite motif-containing 3	AK170029|Trim3|55992|tripartite motif-containing 3	BC034263|Trim3|55992|tripartite motif-containing 3	AK019165|Trim3|55992|tripartite motif-containing 3
mm9_v1_chr17_-_33897428_33897430	3.18972	UAUUGCU	NM_008997|Rab11b|19326|RAB11B, member RAS oncogene family
mm9_v1_chr19_+_10463540_10463619	3.1455	UAUUGCU	NM_018801|Syt7|54525|synaptotagmin VII	NM_173067|Syt7|54525|synaptotagmin VII	NM_173068|Syt7|54525|synaptotagmin VII	AK080850|Syt7|54525|synaptotagmin VII
mm9_v1_chr9_-_111592643_111592751	3.12416	UAUUGCU	BC107325|Stac|20840|src homology three (SH3) and cysteine rich domain	BC107326|Stac|20840|src homology three (SH3) and cysteine rich domain	D86639|Stac|20840|src homology three (SH3) and cysteine rich domain	NM_016853|Stac|20840|src homology three (SH3) and cysteine rich domain	AK134777|Stac|20840|src homology three (SH3) and cysteine rich domain	AK143440|Stac|20840|src homology three (SH3) and cysteine rich domain
mm9_v1_chr2_-_77541328_77541435	3.11821	UAUUGCU	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr4_-_35792385_35792444	3.10554	UAUUGCU	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr2_-_167174531_167174736	3.08804	UAUUGCU	AF142673|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	NM_019835|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	AB004786|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
mm9_v1_chr11_-_4847968_4848115	3.07683	UAUUGCU	AK122388|Nefh|380684|neurofilament, heavy polypeptide	NM_010904|Nefh|380684|neurofilament, heavy polypeptide	M35131|Nefh|380684|neurofilament, heavy polypeptide
mm9_v1_chr3_-_51364525_51364799	3.0741	UAUUGCU	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr2_-_37502738_37502804	3.04423	UAUUGCU	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr14_-_31166671_31166671	2.9425	UAUUGCU	AK147415|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_001083616|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr11_+_54128404_54128494	2.91663	UAUUGCU	NM_001033599|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AY786360|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AY786362|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK032479|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK039380|Acsl6|216739|acyl-CoA synthetase long-chain family member 6
mm9_v1_chr7_-_74517624_74517743	2.91414	UAUUGCU	AK132678|Mef2a|17258|myocyte enhancer factor 2A	BC019116|Mef2a|17258|myocyte enhancer factor 2A	BC096598|Mef2a|17258|myocyte enhancer factor 2A	BC061128|Mef2a|17258|myocyte enhancer factor 2A	AK052385|Mef2a|17258|myocyte enhancer factor 2A	AK153751|Mef2a|17258|myocyte enhancer factor 2A	NM_001033713|Mef2a|17258|myocyte enhancer factor 2A
mm9_v1_chr12_+_3426883_3427022	2.86767	UAUUGCU	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr14_-_13655592_13655605	2.84783	UAUUGCU	AK122453|Cadps|27062|Ca2+-dependent secretion activator	NM_001042617|Cadps|27062|Ca2+-dependent secretion activator	NM_012061|Cadps|27062|Ca2+-dependent secretion activator
mm9_v1_chr2_-_125608472_125608605	2.80949	UAUUGCU	BC095939|Secisbp2l|70354|SECIS binding protein 2-like	AK145135|Secisbp2l|70354|SECIS binding protein 2-like	AK169713|Secisbp2l|70354|SECIS binding protein 2-like	BC141056|Secisbp2l|70354|SECIS binding protein 2-like	AK049924|Secisbp2l|70354|SECIS binding protein 2-like	NM_177608|Secisbp2l|70354|SECIS binding protein 2-like
mm9_v1_chr2_-_122528199_122528447	2.80044	UAUUGCU	AF003747|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	BC117997|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	AK134245|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	AK166106|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	NM_011774|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4
mm9_v1_chr7_-_28231535_28231646	2.80016	UAUUGCU	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr11_-_41996141_41996431	2.79565	UAUUGCU	AK141596|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	AK034095|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	NM_010250|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm9_v1_chr13_-_74454770_74454775	2.79228	UAUUGCU	NM_011051|Pdcd6|18570|programmed cell death 6
mm9_v1_chr9_-_50425561_50425568	2.74947	UAUUGCU	NM_001134902|AU019823|270156|expressed sequence AU019823	NM_212449|AU019823|270156|expressed sequence AU019823
mm9_v1_chr7_-_6107491_6107598	2.70846	UAUUGCU	BC137753|Zfp787|67109|zinc finger protein 787	AK018745|Zfp787|67109|zinc finger protein 787	AK008750|Zfp787|67109|zinc finger protein 787	AK077458|Zfp787|67109|zinc finger protein 787	BC038658|Zfp787|67109|zinc finger protein 787	NM_001013012|Zfp787|67109|zinc finger protein 787	AK006810|Zfp787|67109|zinc finger protein 787
mm9_v1_chr9_+_13632152_13632249	2.7075	UAUUGCU	AK145026|Fam76b|72826|family with sequence similarity 76, member B	BC043120|Fam76b|72826|family with sequence similarity 76, member B	NM_176836|Fam76b|72826|family with sequence similarity 76, member B	AK052430|Fam76b|72826|family with sequence similarity 76, member B	BC050870|Fam76b|72826|family with sequence similarity 76, member B
mm9_v1_chr14_+_120674886_120674908	2.6945	UAUUGCU	NM_175341|Mbnl2|105559|muscleblind-like 2	NM_207515|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr15_+_65618577_65618631	2.69168	UAUUGCU	AK030074|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK039937|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	NM_133766|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK044475|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK052906|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK044000|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	BC032092|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK051060|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK161250|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AB158474|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	BC007482|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK052176|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK129065|Efr3a|76740|EFR3 homolog A (S. cerevisiae)	AK032461|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chr1_-_38954933_38955026	2.688	UAUUGCU	BC056956|Chst10|98388|carbohydrate sulfotransferase 10	AK047378|Chst10|98388|carbohydrate sulfotransferase 10	NM_145142|Chst10|98388|carbohydrate sulfotransferase 10	AK050676|Chst10|98388|carbohydrate sulfotransferase 10
mm9_v1_chr11_-_116274264_116274379	2.63664	UAUUGCU	AK011693|Rnf157|217340|ring finger protein 157	NM_027258|Rnf157|217340|ring finger protein 157
mm9_v1_chr9_+_121669121_121669172	2.63036	UAUUGCU	NM_001166644|Zfp651|270210|zinc finger protein 651
mm9_v1_chr1_-_58642994_58643176	2.62316	UAUUGCU	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr6_-_30254273_30254567	2.62199	UAUUGCU	U19854|Ube2h|22214|ubiquitin-conjugating enzyme E2H	BC008517|Ube2h|22214|ubiquitin-conjugating enzyme E2H	AK131688|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001170345|Gm2058|100039133|predicted gene 2058	AK161414|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001169576|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_009459|Ube2h|22214|ubiquitin-conjugating enzyme E2H
mm9_v1_chr5_-_51945054_51945159	2.57598	UAUUGCU	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr17_-_91492065_91492142	2.56443	UAUUGCU	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr5_-_148706377_148706412	2.55863	UAUUGCU	AK156898|Slc46a3|71706|solute carrier family 46, member 3	NM_027872|Slc46a3|71706|solute carrier family 46, member 3	BC006902|Slc46a3|71706|solute carrier family 46, member 3	AK004609|Slc46a3|71706|solute carrier family 46, member 3
mm9_v1_chr17_-_10512217_10512250	2.55013	UAUUGCU	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr11_+_69579376_69579461	2.53985	UAUUGCU	AK163593|Zbtb4|75580|zinc finger and BTB domain containing 4	NM_029348|Zbtb4|75580|zinc finger and BTB domain containing 4	AK147212|Zbtb4|75580|zinc finger and BTB domain containing 4
mm9_v1_chr13_+_111185251_111185286	2.51117	UAUUGCU	NM_152804|Plk2|20620|polo-like kinase 2 (Drosophila)	AK133962|Plk2|20620|polo-like kinase 2 (Drosophila)	AK143452|Plk2|20620|polo-like kinase 2 (Drosophila)	AK164365|Plk2|20620|polo-like kinase 2 (Drosophila)	BC034513|Plk2|20620|polo-like kinase 2 (Drosophila)	BC035451|Plk2|20620|polo-like kinase 2 (Drosophila)	M96163|Plk2|20620|polo-like kinase 2 (Drosophila)
mm9_v1_chr2_-_38142866_38142913	2.5063	UAUUGCU	BC027786|Dennd1a|227801|DENN/MADD domain containing 1A	AK137530|Dennd1a|227801|DENN/MADD domain containing 1A	BC023016|Dennd1a|227801|DENN/MADD domain containing 1A	NM_146122|Dennd1a|227801|DENN/MADD domain containing 1A
mm9_v1_chr11_-_74981653_74981653	2.50231	UAUUGCU	NM_001098203|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chr3_-_107320881_107320937	2.45308	UAUUGCU	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr1_-_54983211_54983245	2.42093	UAUUGCU	AK038343|Ankrd44|329154|ankyrin repeat domain 44	NM_001081433|Ankrd44|329154|ankyrin repeat domain 44
mm9_v1_chr16_+_56477956_56478012	2.394	UAUUGCU	AK086582|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014399|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014422|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014423|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014424|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_178790|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK041192|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK043879|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK051214|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC145388|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC150763|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190339|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190340|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190341|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190342|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190343|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein
mm9_v1_chr3_-_89126782_89126889	2.38191	UAUUGCU	BC107002|Efna3|13638|ephrin A3	BC125003|Efna3|13638|ephrin A3	NM_010108|Efna3|13638|ephrin A3
mm9_v1_chr5_+_148768875_148768913	2.37893	UAUUGCU	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr11_-_80593259_80593526	2.36574	UAUUGCU	AK188302|Myo1d|338367|myosin ID	AK203977|Myo1d|338367|myosin ID	BC150765|Myo1d|338367|myosin ID	AK037051|Myo1d|338367|myosin ID	AK049374|Myo1d|338367|myosin ID	NM_177390|Myo1d|338367|myosin ID
mm9_v1_chr12_-_92828896_92828926	2.35972	UAUUGCU	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr14_-_40286236_40286375	2.35331	UAUUGCU	AF010130|Nrg3|18183|neuregulin 3	NM_001190187|Nrg3|18183|neuregulin 3	NM_001190188|Nrg3|18183|neuregulin 3	NM_008734|Nrg3|18183|neuregulin 3
mm9_v1_chr6_-_39675456_39675512	2.34528	UAUUGCU	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr15_-_102552527_102552608	2.33782	UAUUGCU	AK087513|Calcoco1|67488|calcium binding and coiled coil domain 1	NM_026192|Calcoco1|67488|calcium binding and coiled coil domain 1
mm9_v1_chr11_+_74433092_74433113	2.24517	UAUUGCU	AK143211|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene	NM_001013784|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene
mm9_v1_chr10_+_79179326_79179429	2.23266	UAUUGCU	AJ225122|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	NM_008226|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	AB154248|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2
mm9_v1_chr6_-_131338465_131338473	2.22112	UAUUGCU	BC027785|Csda|56449|cold shock domain protein A	NM_011733|Csda|56449|cold shock domain protein A	NM_139117|Csda|56449|cold shock domain protein A
mm9_v1_chr7_-_17613079_17613266	2.20065	UAUUGCU	U12204|Ppp5c|19060|protein phosphatase 5, catalytic subunit	BC003744|Ppp5c|19060|protein phosphatase 5, catalytic subunit	AF018262|Ppp5c|19060|protein phosphatase 5, catalytic subunit	NM_011155|Ppp5c|19060|protein phosphatase 5, catalytic subunit
mm9_v1_chr4_-_136913576_136913662	2.10547	UAUUGCU	U37720|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167195|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	BC064792|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167400|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168013|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168076|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168089|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168276|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169232|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK144216|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167609|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK003098|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK075567|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK145659|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK154870|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK166281|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK051543|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK151726|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168820|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK150563|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168503|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169122|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169805|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK151087|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK153564|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168758|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK159470|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	NM_009861|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr11_-_21270779_21270881	2.06541	UAUUGCU	NM_139297|Ugp2|216558|UDP-glucose pyrophosphorylase 2
mm9_v1_chr12_-_4484059_4484074	2.05882	UAUUGCU	NM_010881|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr10_+_21712008_21712034	1.9635	UAUUGCU	NM_001161849|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr6_-_85401198_85401297	1.95595	UAUUGCU	BC115452|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene	AK006658|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene	NM_001163427|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene	NM_028505|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene
mm9_v1_chr14_+_32308241_32308282	1.93489	UAUUGCU	AK044181|Eaf1|74427|ELL associated factor 1	NM_028932|Eaf1|74427|ELL associated factor 1
mm9_v1_chr13_-_104710374_104710739	1.92168	UAUUGCU	BC141178|Erbb2ip|59079|Erbb2 interacting protein	BC141188|Erbb2ip|59079|Erbb2 interacting protein	BC145498|Erbb2ip|59079|Erbb2 interacting protein	BC145509|Erbb2ip|59079|Erbb2 interacting protein	AK169529|Erbb2ip|59079|Erbb2 interacting protein	NM_001005868|Erbb2ip|59079|Erbb2 interacting protein	NM_021563|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr3_+_137004041_137004080	1.91628	UAUUGCU	NM_001163522|Emcn|59308|endomucin	NM_016885|Emcn|59308|endomucin	AK145825|Emcn|59308|endomucin	AK002616|Emcn|59308|endomucin	AK029348|Emcn|59308|endomucin	BC003706|Emcn|59308|endomucin
mm9_v1_chr6_-_35489875_35489887	1.90445	UAUUGCU	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr11_-_115885714_115885820	1.88512	UAUUGCU	BC092300|H3f3b|15081|H3 histone, family 3B	X13605|H3f3b|15081|H3 histone, family 3B	BC021768|H3f3b|15081|H3 histone, family 3B	BC092043|H3f3b|15081|H3 histone, family 3B	BC002052|H3f3b|15081|H3 histone, family 3B	AK169620|H3f3b|15081|H3 histone, family 3B	BC037730|H3f3b|15081|H3 histone, family 3B	AK167828|H3f3b|15081|H3 histone, family 3B	AK153239|H3f3b|15081|H3 histone, family 3B	AK159615|H3f3b|15081|H3 histone, family 3B	AK166605|H3f3b|15081|H3 histone, family 3B	AK168931|H3f3b|15081|H3 histone, family 3B	AK169042|H3f3b|15081|H3 histone, family 3B	AK044933|H3f3b|15081|H3 histone, family 3B	AK151451|H3f3b|15081|H3 histone, family 3B	AK153189|H3f3b|15081|H3 histone, family 3B	AK151274|H3f3b|15081|H3 histone, family 3B	AK151336|H3f3b|15081|H3 histone, family 3B	AK152026|H3f3b|15081|H3 histone, family 3B	AK153294|H3f3b|15081|H3 histone, family 3B	AK153371|H3f3b|15081|H3 histone, family 3B	AK159338|H3f3b|15081|H3 histone, family 3B	AK169226|H3f3b|15081|H3 histone, family 3B	AK146070|H3f3b|15081|H3 histone, family 3B	AK151658|H3f3b|15081|H3 histone, family 3B	AK151661|H3f3b|15081|H3 histone, family 3B	AK151869|H3f3b|15081|H3 histone, family 3B	AK152453|H3f3b|15081|H3 histone, family 3B	AK152455|H3f3b|15081|H3 histone, family 3B	AK152911|H3f3b|15081|H3 histone, family 3B	AK161675|H3f3b|15081|H3 histone, family 3B	AK162426|H3f3b|15081|H3 histone, family 3B	AK168698|H3f3b|15081|H3 histone, family 3B	AK169039|H3f3b|15081|H3 histone, family 3B	AK163244|H3f3b|15081|H3 histone, family 3B	AK002928|H3f3b|15081|H3 histone, family 3B	AK011431|H3f3b|15081|H3 histone, family 3B	AK159807|H3f3b|15081|H3 histone, family 3B	AK159850|H3f3b|15081|H3 histone, family 3B	AK135839|H3f3b|15081|H3 histone, family 3B	AK151222|H3f3b|15081|H3 histone, family 3B	AK152623|H3f3b|15081|H3 histone, family 3B	AK153530|H3f3b|15081|H3 histone, family 3B	NM_008211|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr15_+_81633102_81633182	1.88274	UAUUGCU	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr5_-_124875921_124875965	1.8823	UAUUGCU	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr7_-_118226515_118226580	1.85168	UAUUGCU	AK150745|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK151637|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK144309|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	U76112|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC057673|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC127064|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_001040131|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_013507|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr11_-_103815361_103815405	1.83151	UAUUGCU	BC006627|Nsf|18195|N-ethylmaleimide sensitive fusion protein	NM_008740|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr11_-_118151298_118151557	1.82856	UAUUGCU	AK129363|Usp36|72344|ubiquitin specific peptidase 36	AK079342|Usp36|72344|ubiquitin specific peptidase 36	AK165635|Usp36|72344|ubiquitin specific peptidase 36	AK049205|Usp36|72344|ubiquitin specific peptidase 36	AK028572|Usp36|72344|ubiquitin specific peptidase 36	NM_001033528|Usp36|72344|ubiquitin specific peptidase 36
mm9_v1_chr19_+_46673553_46673665	1.82343	UAUUGCU	NM_001177812|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	NM_146099|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK087487|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	BC026369|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK154686|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK169294|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	BC058949|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed
mm9_v1_chr9_+_118835589_118835685	1.80034	UAUUGCU	AJ344340|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	AK013115|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	NM_133710|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm9_v1_chr11_+_75465000_75465105	1.77258	UAUUGCU	NM_008659|Myo1c|17913|myosin IC	AK155530|Myo1c|17913|myosin IC	X99638|Myo1c|17913|myosin IC	BC021481|Myo1c|17913|myosin IC	AK004743|Myo1c|17913|myosin IC
mm9_v1_chr5_+_115224911_115225148	1.76264	UAUUGCU	AK039432|Ankrd13a|68420|ankyrin repeat domain 13a	AK156539|Ankrd13a|68420|ankyrin repeat domain 13a	BC049187|Ankrd13a|68420|ankyrin repeat domain 13a	BC061692|Ankrd13a|68420|ankyrin repeat domain 13a	NM_026718|Ankrd13a|68420|ankyrin repeat domain 13a
mm9_v1_chr17_+_53706283_53706299	1.76043	UAUUGCU	AK156290|Kat2b|18519|K(lysine) acetyltransferase 2B	NM_020005|Kat2b|18519|K(lysine) acetyltransferase 2B
mm9_v1_chr7_+_94732677_94732677	1.75871	UAUUGCU	NM_001081414|Grm5|108071|glutamate receptor, metabotropic 5	NM_001143834|Grm5|108071|glutamate receptor, metabotropic 5
mm9_v1_chr6_+_116288075_116288140	1.73206	UAUUGCU	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr16_+_4886183_4886360	1.67341	UAUUGCU	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr11_-_103128675_103128714	1.65713	UAUUGCU	BC107015|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	AK172518|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	AK036200|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	NM_016896|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14
mm9_v1_chr8_+_93352723_93352742	1.65067	UAUUGCU	AK034446|Chd9|109151|chromodomain helicase DNA binding protein 9	NM_177224|Chd9|109151|chromodomain helicase DNA binding protein 9	AK039562|Chd9|109151|chromodomain helicase DNA binding protein 9	DQ127229|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr9_-_87625991_87626094	1.6421	UAUUGCU	BC145691|Tbx18|76365|T-box18	AF306666|Tbx18|76365|T-box18	AK032660|Tbx18|76365|T-box18	NM_023814|Tbx18|76365|T-box18
mm9_v1_chr13_+_77847947_77848021	1.63649	UAUUGCU	NM_001163419|Fam172a|68675|family with sequence similarity 172, member A	NM_001163420|Fam172a|68675|family with sequence similarity 172, member A	NM_138312|Fam172a|68675|family with sequence similarity 172, member A	AK165273|Fam172a|68675|family with sequence similarity 172, member A	AK052419|Fam172a|68675|family with sequence similarity 172, member A	AK166285|Fam172a|68675|family with sequence similarity 172, member A	BC057380|Fam172a|68675|family with sequence similarity 172, member A	AK049727|Fam172a|68675|family with sequence similarity 172, member A	AF064782|Fam172a|68675|family with sequence similarity 172, member A	AK081188|Fam172a|68675|family with sequence similarity 172, member A
mm9_v1_chrX_+_69062091_69062188	1.6024	UAUUGCU	NM_001081356|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049488|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK138582|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK011632|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK008848|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK045401|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK164163|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AJ748652|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC094639|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049296|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC028317|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
mm9_v1_chr16_-_91597886_91597995	1.56772	UAUUGCU	AK098154|Tmem50b|77975|transmembrane protein 50B	AK150773|Tmem50b|77975|transmembrane protein 50B	AK172335|Tmem50b|77975|transmembrane protein 50B	AK170684|Tmem50b|77975|transmembrane protein 50B	BC004841|Tmem50b|77975|transmembrane protein 50B	NM_030018|Tmem50b|77975|transmembrane protein 50B	AK020977|Tmem50b|77975|transmembrane protein 50B	AK152190|Tmem50b|77975|transmembrane protein 50B	AK152767|Tmem50b|77975|transmembrane protein 50B	AK133966|Tmem50b|77975|transmembrane protein 50B	AK151796|Tmem50b|77975|transmembrane protein 50B	AK155082|Tmem50b|77975|transmembrane protein 50B
mm9_v1_chr19_+_9004106_9004187	1.55333	UAUUGCU	BC023878|Eml3|225898|echinoderm microtubule associated protein like 3	BC022146|Eml3|225898|echinoderm microtubule associated protein like 3	NM_144872|Eml3|225898|echinoderm microtubule associated protein like 3
mm9_v1_chr16_+_8830175_8830249	1.53773	UAUUGCU	AK007485|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	NM_001081400|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116778|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116780|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene
mm9_v1_chr11_-_6100453_6100453	1.52208	UAUUGCU	NM_173748|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr3_+_45182311_45182350	1.5192	UAUUGCU	BC037259|Pcdh10|18526|protocadherin 10	NM_001098170|Pcdh10|18526|protocadherin 10	NM_001098171|Pcdh10|18526|protocadherin 10	NM_001098172|Pcdh10|18526|protocadherin 10	NM_011043|Pcdh10|18526|protocadherin 10	AK081621|Pcdh10|18526|protocadherin 10	AK081977|Pcdh10|18526|protocadherin 10	BC026712|Pcdh10|18526|protocadherin 10	AK122503|Pcdh10|18526|protocadherin 10
mm9_v1_chr10_+_21601968_21601989	1.51601	UAUUGCU	BC070401|Sgk1|20393|serum/glucocorticoid regulated kinase 1	NM_001161845|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr2_-_180008165_180008177	1.49359	UAUUGCU	AK050121|Cables2|252966|CDK5 and Abl enzyme substrate 2	NM_145851|Cables2|252966|CDK5 and Abl enzyme substrate 2
mm9_v1_chr2_+_164793487_164793487	1.47021	UAUUGCU	AK147262|Slc12a5|57138|solute carrier family 12, member 5	NM_020333|Slc12a5|57138|solute carrier family 12, member 5
mm9_v1_chr11_+_75401554_75401692	1.46232	UAUUGCU	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr18_+_56591785_56591811	1.45953	UAUUGCU	NM_026240|Gramd3|107022|GRAM domain containing 3	AK018691|Gramd3|107022|GRAM domain containing 3	AK164050|Gramd3|107022|GRAM domain containing 3
mm9_v1_chr11_-_65601774_65601862	1.45929	UAUUGCU	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr11_+_77908168_77908192	1.45558	UAUUGCU	AK085728|BC017647|216971|cDNA sequence BC017647	NM_145430|BC017647|216971|cDNA sequence BC017647	AK047860|BC017647|216971|cDNA sequence BC017647	AK140562|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr5_+_77445047_77445068	1.4297	UAUUGCU	BC053422|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene	NM_027970|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene	AK006270|1700023E05Rik|71868|RIKEN cDNA 1700023E05 gene
mm9_v1_chr11_+_75469516_75469674	1.42765	UAUUGCU	AK171107|Myo1c|17913|myosin IC	NM_001080775|Myo1c|17913|myosin IC	AK154294|Myo1c|17913|myosin IC	AK165680|Myo1c|17913|myosin IC	AY007255|Myo1c|17913|myosin IC
mm9_v1_chr2_+_151368197_151368330	1.42593	UAUUGCU	NM_008019|Fkbp1a|14225|FK506 binding protein 1a	AK019362|Fkbp1a|14225|FK506 binding protein 1a	AK010693|Fkbp1a|14225|FK506 binding protein 1a	AK145400|Fkbp1a|14225|FK506 binding protein 1a	AK169242|Fkbp1a|14225|FK506 binding protein 1a	AK141261|Fkbp1a|14225|FK506 binding protein 1a	AK168333|Fkbp1a|14225|FK506 binding protein 1a
mm9_v1_chr7_-_54389053_54389053	1.42322	UAUUGCU	NM_013643|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	U28217|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5
mm9_v1_chr9_-_44096170_44096326	1.39194	UAUUGCU	AY040865|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF411084|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AJ426047|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF425077|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	BC016200|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AK043147|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	NM_138955|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4
mm9_v1_chr1_-_52290058_52290076	1.36593	UAUUGCU	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr7_+_62090614_62090614	1.36079	UAUUGCU	AY164459|Luzp2|233271|leucine zipper protein 2	NM_178705|Luzp2|233271|leucine zipper protein 2
mm9_v1_chr6_-_137597616_137597640	1.34811	UAUUGCU	AK166156|Eps8|13860|epidermal growth factor receptor pathway substrate 8	NM_007945|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr2_+_128793137_128793209	1.33847	UAUUGCU	AK050503|Zc3h6|78751|zinc finger CCCH type containing 6	NM_178404|Zc3h6|78751|zinc finger CCCH type containing 6	AK013610|Zc3h6|78751|zinc finger CCCH type containing 6	AK019345|Zc3h6|78751|zinc finger CCCH type containing 6	AK039171|Zc3h6|78751|zinc finger CCCH type containing 6	AK014766|Zc3h6|78751|zinc finger CCCH type containing 6	BC058173|Zc3h6|78751|zinc finger CCCH type containing 6
mm9_v1_chr17_+_28314346_28314398	1.33485	UAUUGCU	AK028222|Zfp523|224656|zinc finger protein 523	NM_172617|Zfp523|224656|zinc finger protein 523	BC025615|Zfp523|224656|zinc finger protein 523
mm9_v1_chr18_+_21159829_21159841	1.31165	UAUUGCU	AB025010|Rnf138|56515|ring finger protein 138	AB025011|Rnf138|56515|ring finger protein 138	NM_019706|Rnf138|56515|ring finger protein 138	NM_207623|Rnf138|56515|ring finger protein 138
mm9_v1_chr2_+_52716901_52716906	1.30062	UAUUGCU	NM_172409|Fmnl2|71409|formin-like 2
mm9_v1_chr3_-_120966206_120966262	1.29731	UAUUGCU	BC040365|Tmem56|99887|transmembrane protein 56	NM_178936|Tmem56|99887|transmembrane protein 56	AK149544|Tmem56|99887|transmembrane protein 56
mm9_v1_chr2_-_25978328_25978339	1.26328	UAUUGCU	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr18_+_36838868_36838897	1.25084	UAUUGCU	NM_001083317|Slc35a4|67843|solute carrier family 35, member A4	NM_026404|Slc35a4|67843|solute carrier family 35, member A4
mm9_v1_chr6_-_88791928_88791961	1.248	UAUUGCU	NM_030251|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1
mm9_v1_chr15_-_75672300_75672387	1.21818	UAUUGCU	BC060682|Zc3h3|223642|zinc finger CCCH type containing 3	AJ516034|Zc3h3|223642|zinc finger CCCH type containing 3	BC111448|Zc3h3|223642|zinc finger CCCH type containing 3	NM_172121|Zc3h3|223642|zinc finger CCCH type containing 3	AK138281|Zc3h3|223642|zinc finger CCCH type containing 3
mm9_v1_chr12_-_78063011_78063244	1.21559	UAUUGCU	S80521|Max|17187|Max protein	BC138671|Max|17187|Max protein	BC138672|Max|17187|Max protein	BC145369|Max|17187|Max protein	M63903|Max|17187|Max protein	AK080431|Max|17187|Max protein	NM_001146176|Max|17187|Max protein	NM_008558|Max|17187|Max protein
mm9_v1_chr10_-_85961630_85961659	1.19087	UAUUGCU	AK043854|Syn3|27204|synapsin III	AK087342|Syn3|27204|synapsin III	NM_001164495|Syn3|27204|synapsin III	NM_013722|Syn3|27204|synapsin III
mm9_v1_chr4_+_140462254_140462341	1.163	UAUUGCU	NM_008812|Padi2|18600|peptidyl arginine deiminase, type II	AK158382|Padi2|18600|peptidyl arginine deiminase, type II	AK171275|Padi2|18600|peptidyl arginine deiminase, type II	AK148156|Padi2|18600|peptidyl arginine deiminase, type II	AK154814|Padi2|18600|peptidyl arginine deiminase, type II	BC049947|Padi2|18600|peptidyl arginine deiminase, type II	BC040350|Padi2|18600|peptidyl arginine deiminase, type II	D16580|Padi2|18600|peptidyl arginine deiminase, type II
mm9_v1_chr4_-_9596206_9596308	1.1559	UAUUGCU	BC015281|Asph|65973|aspartate-beta-hydroxylase	AF289486|Asph|65973|aspartate-beta-hydroxylase	AF289487|Asph|65973|aspartate-beta-hydroxylase	AF289488|Asph|65973|aspartate-beta-hydroxylase	AK030293|Asph|65973|aspartate-beta-hydroxylase	AK032420|Asph|65973|aspartate-beta-hydroxylase	AK151787|Asph|65973|aspartate-beta-hydroxylase	AK049506|Asph|65973|aspartate-beta-hydroxylase	AK139566|Asph|65973|aspartate-beta-hydroxylase	AK160984|Asph|65973|aspartate-beta-hydroxylase	AK165260|Asph|65973|aspartate-beta-hydroxylase	BC061098|Asph|65973|aspartate-beta-hydroxylase	NM_001177849|Asph|65973|aspartate-beta-hydroxylase	NM_001177850|Asph|65973|aspartate-beta-hydroxylase	NM_001177851|Asph|65973|aspartate-beta-hydroxylase	NM_001177855|Asph|65973|aspartate-beta-hydroxylase	NM_001177856|Asph|65973|aspartate-beta-hydroxylase	NM_023066|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr9_+_71063591_71063595	1.15583	UAUUGCU	NM_009022|Aldh1a2|19378|aldehyde dehydrogenase family 1, subfamily A2
mm9_v1_chr6_-_18464792_18464824	1.15279	UAUUGCU	AK028980|Cttnbp2|30785|cortactin binding protein 2	AK019384|Cttnbp2|30785|cortactin binding protein 2	BC141407|Cttnbp2|30785|cortactin binding protein 2	NM_080285|Cttnbp2|30785|cortactin binding protein 2
mm9_v1_chr5_-_23122181_23122418	1.13254	UAUUGCU	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr2_+_79475581_79475821	1.12969	UAUUGCU	AK169543|Ssfa2|70599|sperm specific antigen 2	NM_080558|Ssfa2|70599|sperm specific antigen 2	AB120565|Ssfa2|70599|sperm specific antigen 2	BC141883|Ssfa2|70599|sperm specific antigen 2	BC115799|Ssfa2|70599|sperm specific antigen 2	BC122519|Ssfa2|70599|sperm specific antigen 2	AB093303|Ssfa2|70599|sperm specific antigen 2
mm9_v1_chr1_+_181476534_181476659	1.09752	UAUUGCU	AK146681|Cnst|226744|consortin, connexin sorting protein	AK089290|Cnst|226744|consortin, connexin sorting protein	AK036332|Cnst|226744|consortin, connexin sorting protein	AK040899|Cnst|226744|consortin, connexin sorting protein	AK040666|Cnst|226744|consortin, connexin sorting protein	AK087361|Cnst|226744|consortin, connexin sorting protein	BC054802|Cnst|226744|consortin, connexin sorting protein	NM_146105|Cnst|226744|consortin, connexin sorting protein
mm9_v1_chr1_-_134638361_134638397	1.08504	UAUUGCU	AK052440|Nfasc|269116|neurofascin	NM_001160317|Nfasc|269116|neurofascin	NM_182716|Nfasc|269116|neurofascin
mm9_v1_chr6_+_114232618_114232629	1.07943	UAUUGCU	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr1_+_140864297_140864301	1.06983	UAUUGCU	AK155727|Dennd1b|329260|DENN/MADD domain containing 1B	NM_181347|Dennd1b|329260|DENN/MADD domain containing 1B	BC141388|Dennd1b|329260|DENN/MADD domain containing 1B	BC141389|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr10_+_74675134_74675134	1.06301	UAUUGCU	AB093236|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like	NM_001145826|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like
mm9_v1_chrX_+_96133099_96133119	1.0577	UAUUGCU	AK030473|Yipf6|77929|Yip1 domain family, member 6	AK053562|Yipf6|77929|Yip1 domain family, member 6	NM_207633|Yipf6|77929|Yip1 domain family, member 6
mm9_v1_chr5_+_35104373_35104397	1.05316	UAUUGCU	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr12_+_70473032_70473193	1.05049	UAUUGCU	BC083112|Arf6|11845|ADP-ribosylation factor 6	NM_007481|Arf6|11845|ADP-ribosylation factor 6	AK156960|Arf6|11845|ADP-ribosylation factor 6	BC003478|Arf6|11845|ADP-ribosylation factor 6	D87903|Arf6|11845|ADP-ribosylation factor 6
mm9_v1_chr11_+_51577152_51577250	1.02579	UAUUGCU	NM_025535|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK002327|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK155429|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	BC082550|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK150906|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	BC085178|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK013559|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)
mm9_v1_chr17_+_44090139_44090183	1.02433	UAUUGCU	BC049096|Rcan2|53901|regulator of calcineurin 2	NM_030598|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr15_-_31297286_31297513	1.02128	UAUUGCU	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr1_+_6720087_6720131	0.999099	UAUUGCU	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr19_-_6996189_6996331	0.998026	UAUUGCU	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr4_+_48137778_48137803	0.986359	UAUUGCU	AK014718|Stx17|67727|syntaxin 17	AK154503|Stx17|67727|syntaxin 17	NM_026343|Stx17|67727|syntaxin 17	AK011400|Stx17|67727|syntaxin 17	AK135240|Stx17|67727|syntaxin 17	AK018526|Stx17|67727|syntaxin 17	AK034718|Stx17|67727|syntaxin 17	BC028639|Stx17|67727|syntaxin 17
mm9_v1_chr12_+_112812710_112812750	0.979512	UAUUGCU	AK083683|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	NM_021516|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	NM_022801|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	AK166157|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	AK132247|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	BC066071|Mark3|17169|MAP/microtubule affinity-regulating kinase 3
mm9_v1_chr12_+_11272691_11272706	0.9637	UAUUGCU	BC090630|Smc6|67241|structural maintenance of chromosomes 6	NM_025695|Smc6|67241|structural maintenance of chromosomes 6
mm9_v1_chr6_+_97757012_97757093	0.948363	UAUUGCU	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr10_-_126497197_126497239	0.931744	UAUUGCU	AK158026|March9|216438|membrane-associated ring finger (C3HC4) 9	NM_001033262|March9|216438|membrane-associated ring finger (C3HC4) 9
mm9_v1_chr9_-_117161564_117161606	0.924682	UAUUGCU	BC108402|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK052196|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK032938|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK081921|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK051776|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK041098|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172122|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172123|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172124|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172126|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_178660|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr14_-_70999625_70999666	0.904267	UAUUGCU	NM_194345|Fam160b2|239170|family with sequence similarity 160, member B2	BC050861|Fam160b2|239170|family with sequence similarity 160, member B2
mm9_v1_chr10_-_80958977_80959145	0.887061	UAUUGCU	AK019409|Ncln|103425|nicalin homolog (zebrafish)	AK048954|Ncln|103425|nicalin homolog (zebrafish)	BC019501|Ncln|103425|nicalin homolog (zebrafish)	NM_134009|Ncln|103425|nicalin homolog (zebrafish)	AK128887|Ncln|103425|nicalin homolog (zebrafish)
mm9_v1_chr11_-_51670897_51671154	0.881831	UAUUGCU	AK147453|Phf15|76901|PHD finger protein 15	AK129097|Phf15|76901|PHD finger protein 15	NM_199299|Phf15|76901|PHD finger protein 15	AK004823|Phf15|76901|PHD finger protein 15
mm9_v1_chr2_+_10294062_10294208	0.865017	UAUUGCU	AK040600|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198809|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_177386|Sfmbt2|353282|Scm-like with four mbt domains 2	AK052339|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115510|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115511|Sfmbt2|353282|Scm-like with four mbt domains 2	AK147651|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr13_+_9275741_9275783	0.847429	UAUUGCU	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr2_-_66278870_66278908	0.841792	UAUUGCU	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr1_-_186823350_186823427	0.765315	UAUUGCU	AB185282|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	BC112400|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	AF453686|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	NM_145515|Mark1|226778|MAP/microtubule affinity-regulating kinase 1
mm9_v1_chr3_+_55265654_55265683	0.744715	UAUUGCU	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chrX_-_72376117_72376367	0.742932	UAUUGCU	AK188498|Mpp1|17524|membrane protein, palmitoylated	AJ627041|Mpp1|17524|membrane protein, palmitoylated	BC138314|Mpp1|17524|membrane protein, palmitoylated	BC138315|Mpp1|17524|membrane protein, palmitoylated	AK168352|Mpp1|17524|membrane protein, palmitoylated	AK152379|Mpp1|17524|membrane protein, palmitoylated	AK081829|Mpp1|17524|membrane protein, palmitoylated	AK165261|Mpp1|17524|membrane protein, palmitoylated	NM_008621|Mpp1|17524|membrane protein, palmitoylated	AK036415|Mpp1|17524|membrane protein, palmitoylated	BC013444|Mpp1|17524|membrane protein, palmitoylated	U38196|Mpp1|17524|membrane protein, palmitoylated	AK048532|Mpp1|17524|membrane protein, palmitoylated
mm9_v1_chr8_-_108020769_108020996	0.72596	UAUUGCU	AK038593|Zdhhc1|70796|zinc finger, DHHC domain containing 1	NM_175160|Zdhhc1|70796|zinc finger, DHHC domain containing 1
mm9_v1_chr15_+_73555336_73555359	0.707669	UAUUGCU	BC066043|Ptp4a3|19245|protein tyrosine phosphatase 4a3	NM_001166388|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr1_-_166237573_166237642	0.676444	UAUUGCU	AK029787|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160208|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160209|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_025505|Blzf1|66352|basic leucine zipper nuclear factor 1	AK006544|Blzf1|66352|basic leucine zipper nuclear factor 1	AK167493|Blzf1|66352|basic leucine zipper nuclear factor 1
mm9_v1_chr16_+_96502595_96502638	0.657808	UAUUGCU	BC057887|B3galt5|93961|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	NM_033149|B3galt5|93961|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
mm9_v1_chr5_+_87233514_87233581	0.651915	UAUUGCU	NM_177680|Ythdc1|231386|YTH domain containing 1
mm9_v1_chr15_-_38448923_38449033	0.63753	UAUUGCU	BC046814|Azin1|54375|antizyme inhibitor 1	BC021152|Azin1|54375|antizyme inhibitor 1	BC019412|Azin1|54375|antizyme inhibitor 1	AK088112|Azin1|54375|antizyme inhibitor 1	AK088671|Azin1|54375|antizyme inhibitor 1	AK133914|Azin1|54375|antizyme inhibitor 1	AK049680|Azin1|54375|antizyme inhibitor 1	NM_001102458|Azin1|54375|antizyme inhibitor 1	NM_018745|Azin1|54375|antizyme inhibitor 1
mm9_v1_chr6_-_126595818_126595818	0.623647	UAUUGCU	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr11_-_87172419_87172533	0.619575	UAUUGCU	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr1_-_134539434_134539434	0.619147	UAUUGCU	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr5_+_144861227_144861325	0.611578	UAUUGCU	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr2_-_7317513_7317626	0.610186	UAUUGCU	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr19_+_38911056_38911166	0.607385	UAUUGCU	AK172979|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	NM_145952|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138056|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138057|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC145129|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12
mm9_v1_chr15_-_89011113_89011248	0.606206	UAUUGCU	BC031202|Plxnb2|140570|plexin B2	AK154627|Plxnb2|140570|plexin B2	BC157960|Plxnb2|140570|plexin B2	BC157961|Plxnb2|140570|plexin B2	AK147538|Plxnb2|140570|plexin B2	NM_138749|Plxnb2|140570|plexin B2
mm9_v1_chr15_+_100766701_100766755	0.6049	UAUUGCU	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr19_+_46697882_46697901	0.60385	UAUUGCU	AK078491|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK142695|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	NM_001177813|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK052400|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed
mm9_v1_chr10_+_127529818_127529845	0.584261	UAUUGCU	AK133149|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC048415|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	NM_054078|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr7_-_50745358_50745392	0.583351	UAUUGCU	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr6_+_21899614_21899692	0.581255	UAUUGCU	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr5_-_144288812_144288864	0.567759	UAUUGCU	BC051053|Rac1|19353|RAS-related C3 botulinum substrate 1	BC003828|Rac1|19353|RAS-related C3 botulinum substrate 1	AK008435|Rac1|19353|RAS-related C3 botulinum substrate 1	AK009017|Rac1|19353|RAS-related C3 botulinum substrate 1	AK011072|Rac1|19353|RAS-related C3 botulinum substrate 1	AK034601|Rac1|19353|RAS-related C3 botulinum substrate 1	AK166383|Rac1|19353|RAS-related C3 botulinum substrate 1	NM_009007|Rac1|19353|RAS-related C3 botulinum substrate 1	AK047969|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr11_-_100981015_100981199	0.566302	UAUUGCU	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr7_-_127038916_127038971	0.56599	UAUUGCU	AK029043|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	NM_173408|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm9_v1_chr14_-_65568677_65568719	0.556499	UAUUGCU	AK089782|Hmbox1|219150|homeobox containing 1	AK161592|Hmbox1|219150|homeobox containing 1	NM_177338|Hmbox1|219150|homeobox containing 1	BC051457|Hmbox1|219150|homeobox containing 1	AK052729|Hmbox1|219150|homeobox containing 1
mm9_v1_chr17_-_75951137_75951285	0.553045	UAUUGCU	AK167224|Fam98a|72722|family with sequence similarity 98, member A	BC004626|Fam98a|72722|family with sequence similarity 98, member A	AK146955|Fam98a|72722|family with sequence similarity 98, member A	AK046481|Fam98a|72722|family with sequence similarity 98, member A	AK012997|Fam98a|72722|family with sequence similarity 98, member A	AK146215|Fam98a|72722|family with sequence similarity 98, member A	AK146761|Fam98a|72722|family with sequence similarity 98, member A	NM_133747|Fam98a|72722|family with sequence similarity 98, member A
mm9_v1_chr2_+_158235580_158235588	0.540235	UAUUGCU	NM_177658|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr7_-_123182257_123182257	0.521364	UAUUGCU	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr9_-_94438499_94438504	0.520889	UAUUGCU	NM_001033145|1190002N15Rik|68861|RIKEN cDNA 1190002N15 gene
mm9_v1_chr4_-_57314708_57314708	0.504319	UAUUGCU	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr4_-_117807482_117807555	0.494809	UAUUGCU	AK013016|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK005053|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_009176|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK136442|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	BC006710|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_001161774|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3
mm9_v1_chr3_+_88489708_88489765	0.483594	UAUUGCU	NM_028814|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK170490|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK038617|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	BC006621|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK012969|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK173057|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK083018|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK164337|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK020778|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene
mm9_v1_chr9_-_88376937_88377419	0.47797	UAUUGCU	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr6_-_71390592_71390638	0.471099	UAUUGCU	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr13_+_94827750_94827786	0.46352	UAUUGCU	AK087506|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2	NM_172589|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2	AK031635|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2	AK054342|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2
mm9_v1_chr14_-_94287950_94288026	0.439966	UAUUGCU	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr2_-_168415690_168415866	0.435656	UAUUGCU	AF289078|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887582|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887588|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887594|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887600|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001136073|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36575|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36576|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_010899|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	BC064006|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK081853|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887584|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887586|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887590|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887592|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887596|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887602|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887604|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001037177|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK135414|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887598|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
mm9_v1_chr1_+_107886982_107886982	0.424708	UAUUGCU	AK046562|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122675|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122676|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr11_+_100181296_100181331	0.42012	UAUUGCU	AK150813|Eif1|20918|eukaryotic translation initiation factor 1	AK151575|Eif1|20918|eukaryotic translation initiation factor 1	AK152194|Eif1|20918|eukaryotic translation initiation factor 1	AK169763|Eif1|20918|eukaryotic translation initiation factor 1	AK148032|Eif1|20918|eukaryotic translation initiation factor 1	AK151070|Eif1|20918|eukaryotic translation initiation factor 1	BC003463|Eif1|20918|eukaryotic translation initiation factor 1	NM_011508|Eif1|20918|eukaryotic translation initiation factor 1	BC081429|Eif1|20918|eukaryotic translation initiation factor 1	AF129888|Eif1|20918|eukaryotic translation initiation factor 1	BC010791|Eif1|20918|eukaryotic translation initiation factor 1	BC096691|Eif1|20918|eukaryotic translation initiation factor 1	BC096656|Eif1|20918|eukaryotic translation initiation factor 1
mm9_v1_chr8_+_13105702_13105757	0.418358	UAUUGCU	NM_146207|Cul4a|99375|cullin 4A	AK144802|Cul4a|99375|cullin 4A	AK166251|Cul4a|99375|cullin 4A	AK170722|Cul4a|99375|cullin 4A	AK168215|Cul4a|99375|cullin 4A	AK084008|Cul4a|99375|cullin 4A	BC010211|Cul4a|99375|cullin 4A	AK150237|Cul4a|99375|cullin 4A
mm9_v1_chr11_+_69139759_69139835	0.411362	UAUUGCU	AK049316|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK083134|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	NM_010599|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK046194|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK031806|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK044102|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	BC017518|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3
mm9_v1_chr8_+_85387234_85387370	0.406206	UAUUGCU	AK032722|Rnf150|330812|ring finger protein 150	AK041412|Rnf150|330812|ring finger protein 150	NM_177378|Rnf150|330812|ring finger protein 150	AK220374|Rnf150|330812|ring finger protein 150
mm9_v1_chr11_+_33947115_33947287	0.387723	UAUUGCU	AK036727|Lcp2|16822|lymphocyte cytosolic protein 2	AK037970|Lcp2|16822|lymphocyte cytosolic protein 2	U20159|Lcp2|16822|lymphocyte cytosolic protein 2	AK168134|Lcp2|16822|lymphocyte cytosolic protein 2	AK153374|Lcp2|16822|lymphocyte cytosolic protein 2	BC006948|Lcp2|16822|lymphocyte cytosolic protein 2	NM_010696|Lcp2|16822|lymphocyte cytosolic protein 2
mm9_v1_chr4_-_70195952_70195978	0.377772	UAUUGCU	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr13_-_94269616_94269653	0.375355	UAUUGCU	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr10_-_13272899_13272947	0.367281	UAUUGCU	BC037606|Pex3|56535|peroxisomal biogenesis factor 3	AK005315|Pex3|56535|peroxisomal biogenesis factor 3	AK012827|Pex3|56535|peroxisomal biogenesis factor 3	AK146934|Pex3|56535|peroxisomal biogenesis factor 3	NM_001164195|Pex3|56535|peroxisomal biogenesis factor 3	NM_019961|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr4_+_118100682_118100801	0.367103	UAUUGCU	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr1_-_25886551_25886551	0.331461	UAUUGCU	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr14_+_8835385_8835479	0.33022	UAUUGCU	NM_025341|Abhd6|66082|abhydrolase domain containing 6	AK090076|Abhd6|66082|abhydrolase domain containing 6	BC027011|Abhd6|66082|abhydrolase domain containing 6	AK168782|Abhd6|66082|abhydrolase domain containing 6	AK002883|Abhd6|66082|abhydrolase domain containing 6	AK011887|Abhd6|66082|abhydrolase domain containing 6	AK076105|Abhd6|66082|abhydrolase domain containing 6
mm9_v1_chr6_+_137359231_137359310	0.328543	UAUUGCU	NM_001164402|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_001164403|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37465|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37466|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr7_+_119902897_119902956	0.311057	UAUUGCU	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chr1_-_184447549_184447745	0.299395	UAUUGCU	AF015038|Capn2|12334|calpain 2	AK150695|Capn2|12334|calpain 2	AK152094|Capn2|12334|calpain 2	AK152790|Capn2|12334|calpain 2	AK152994|Capn2|12334|calpain 2	AK052141|Capn2|12334|calpain 2	BC054726|Capn2|12334|calpain 2	NM_009794|Capn2|12334|calpain 2	AK154855|Capn2|12334|calpain 2	D38117|Capn2|12334|calpain 2	AK053832|Capn2|12334|calpain 2
mm9_v1_chr1_-_121733647_121733647	0.297647	UAUUGCU	NM_019933|Ptpn4|19258|protein tyrosine phosphatase, non-receptor type 4
mm9_v1_chr17_-_79135885_79135936	0.289211	UAUUGCU	BC090968|Strn|268980|striatin, calmodulin binding protein	NM_011500|Strn|268980|striatin, calmodulin binding protein	AK051549|Strn|268980|striatin, calmodulin binding protein
mm9_v1_chr2_+_156022382_156022502	0.277153	UAUUGCU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr2_+_153117135_153117203	0.271699	UAUUGCU	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr18_-_39646734_39646900	0.269913	UAUUGCU	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr13_-_46060325_46060353	0.266783	UAUUGCU	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr11_+_72609717_72609729	0.266129	UAUUGCU	AK158924|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1	NM_001045536|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1
mm9_v1_chr2_-_132641694_132641790	0.253849	UAUUGCU	BC027565|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	BC052648|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK164396|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK017672|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK165976|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK167222|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK129300|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK028755|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	NM_175113|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)	AK014359|Trmt6|66926|tRNA methyltransferase 6 homolog (S. cerevisiae)
mm9_v1_chr15_-_86016336_86016570	0.247385	UAUUGCU	AK052269|Cerk|223753|ceramide kinase	BC094253|Cerk|223753|ceramide kinase	NM_145475|Cerk|223753|ceramide kinase
mm9_v1_chr10_-_126725826_126725958	0.244446	UAUUGCU	BC059015|Mbd6|110962|methyl-CpG binding domain protein 6	NM_033072|Mbd6|110962|methyl-CpG binding domain protein 6	AK158797|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr16_+_11066390_11066492	0.217419	UAUUGCU	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chr17_+_70774131_70774133	0.206527	UAUUGCU	NM_027712|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	NM_177639|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	BC062120|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chrX_+_71574403_71574439	0.201394	UAUUGCU	NM_008883|Plxna3|18846|plexin A3	BC093482|Plxna3|18846|plexin A3	D86950|Plxna3|18846|plexin A3
mm9_v1_chr15_-_89004279_89004426	0.19885	UAUUGCU	BC158086|Plxnb2|140570|plexin B2	BC172162|Plxnb2|140570|plexin B2	NM_001159521|Plxnb2|140570|plexin B2
mm9_v1_chr10_+_79317316_79317391	0.195398	UAUUGCU	AK151292|Ptbp1|19205|polypyrimidine tract binding protein 1	AK153561|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_001077363|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_008956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK163274|Ptbp1|19205|polypyrimidine tract binding protein 1	BC007472|Ptbp1|19205|polypyrimidine tract binding protein 1	AK082600|Ptbp1|19205|polypyrimidine tract binding protein 1	AK150840|Ptbp1|19205|polypyrimidine tract binding protein 1	AK168392|Ptbp1|19205|polypyrimidine tract binding protein 1	AK037607|Ptbp1|19205|polypyrimidine tract binding protein 1	AK172712|Ptbp1|19205|polypyrimidine tract binding protein 1	AK044956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK043824|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr14_+_31292750_31292775	0.180162	UAUUGCU	AJ344447|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	NM_133761|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr11_+_66891799_66891859	0.176485	UAUUGCU	AY963798|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic	NM_001099635|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic	DQ021874|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic	DQ021875|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic
mm9_v1_chr3_+_32335072_32335127	0.174049	UAUUGCU	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr8_+_55162885_55163132	0.164603	UAUUGCU	NM_009506|Vegfc|22341|vascular endothelial growth factor C	AK047844|Vegfc|22341|vascular endothelial growth factor C	U73620|Vegfc|22341|vascular endothelial growth factor C	BC096377|Vegfc|22341|vascular endothelial growth factor C	U58112|Vegfc|22341|vascular endothelial growth factor C	EU862554|Vegfc|22341|vascular endothelial growth factor C	EU862555|Vegfc|22341|vascular endothelial growth factor C
mm9_v1_chr6_-_99216494_99216530	0.163192	UAUUGCU	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr7_+_130114059_130114440	0.154333	UAUUGCU	NM_011247|Rbbp6|19647|retinoblastoma binding protein 6	NM_175023|Rbbp6|19647|retinoblastoma binding protein 6	AK081261|Rbbp6|19647|retinoblastoma binding protein 6	AK045635|Rbbp6|19647|retinoblastoma binding protein 6	BC025874|Rbbp6|19647|retinoblastoma binding protein 6
mm9_v1_chr6_+_38383918_38383949	0.148168	UAUUGCU	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr18_+_77303920_77303957	0.147959	UAUUGCU	AK029716|Pias2|17344|protein inhibitor of activated STAT 2	NM_001164167|Pias2|17344|protein inhibitor of activated STAT 2	NM_001164169|Pias2|17344|protein inhibitor of activated STAT 2	NM_008602|Pias2|17344|protein inhibitor of activated STAT 2	AK014871|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chrX_-_17149313_17149460	0.147268	UAUUGCU	BC012515|Fundc1|72018|FUN14 domain containing 1	AK168868|Fundc1|72018|FUN14 domain containing 1	BC030487|Fundc1|72018|FUN14 domain containing 1	AK005163|Fundc1|72018|FUN14 domain containing 1	NM_028058|Fundc1|72018|FUN14 domain containing 1
mm9_v1_chr13_-_53472719_53472729	0.143	UAUUGCU	AK084445|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	X95641|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK079578|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	BC046323|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	NM_009269|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1
mm9_v1_chr14_-_48188088_48188108	0.13703	UAUUGCU	AK029330|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK029967|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	BC090995|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK054196|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	NM_172599|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)
mm9_v1_chr18_-_82862111_82862127	0.132973	UAUUGCU	BC138187|Zfp236|329002|zinc finger protein 236	BC145179|Zfp236|329002|zinc finger protein 236	BC145180|Zfp236|329002|zinc finger protein 236	NM_177832|Zfp236|329002|zinc finger protein 236
mm9_v1_chr13_-_69138418_69138432	0.120031	UAUUGCU	AK132312|Adcy2|210044|adenylate cyclase 2	NM_153534|Adcy2|210044|adenylate cyclase 2
mm9_v1_chr10_-_40021983_40022002	0.109331	UAUUGCU	AK146840|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK166187|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK168165|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK171238|Amd1|11702|S-adenosylmethionine decarboxylase 1	D12780|Amd1|11702|S-adenosylmethionine decarboxylase 1	NM_007444|Amd2|100041585|S-adenosylmethionine decarboxylase 2	NM_009665|Amd1|11702|S-adenosylmethionine decarboxylase 1
mm9_v1_chr8_+_127536825_127536928	0.10872	UAUUGCU	AF187040|Tsnax|53424|translin-associated factor X	NM_016909|Tsnax|53424|translin-associated factor X	AK159223|Tsnax|53424|translin-associated factor X
mm9_v1_chr9_+_43552516_43552726	0.108544	UAUUGCU	BC060694|Pvrl1|58235|poliovirus receptor-related 1	NM_021424|Pvrl1|58235|poliovirus receptor-related 1	AF297665|Pvrl1|58235|poliovirus receptor-related 1	AF239762|Pvrl1|58235|poliovirus receptor-related 1	AF270977|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr11_+_54117299_54117368	0.106199	UAUUGCU	AY786363|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK147283|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	NM_001033598|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	BC016114|Acsl6|216739|acyl-CoA synthetase long-chain family member 6
mm9_v1_chr5_+_29895742_29895846	0.0980745	UAUUGCU	AK046056|Ube3c|100763|ubiquitin protein ligase E3C	NM_133907|Ube3c|100763|ubiquitin protein ligase E3C	AK122187|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr6_-_124807704_124807729	0.0942634	UAUUGCU	AJ441086|Leprel2|14789|leprecan-like 2	AY463530|Leprel2|14789|leprecan-like 2	NM_013534|Leprel2|14789|leprecan-like 2
mm9_v1_chr17_+_35263978_35264059	0.090385	UAUUGCU	BC138707|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	BC138708|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	NM_033477|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E
mm9_v1_chr5_-_144775583_144775788	0.087259	UAUUGCU	AK213761|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	BC048077|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	NM_177682|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK090008|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK171671|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK172392|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK146704|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK150793|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152328|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152576|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK153160|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK164888|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
mm9_v1_chr4_+_57867433_57867513	0.0868558	UAUUGCU	NM_001035533|Akap2|11641|A kinase (PRKA) anchor protein 2	AK182017|Akap2|11641|A kinase (PRKA) anchor protein 2	AK209944|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr14_-_34260323_34260352	0.0851804	UAUUGCU	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr16_+_20589654_20589675	0.0729668	UAUUGCU	AK141799|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_001144953|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_182636|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr6_-_97129076_97129149	0.0677078	UAUUGCU	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr5_+_67137054_67137078	0.0572882	UAUUGCU	NM_001001980|Limch1|77569|LIM and calponin homology domains 1
mm9_v1_chr8_-_38015410_38015497	0.0501493	UAUUGCU	AK053142|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene	AK043205|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene	AK045326|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene	NM_178735|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene
mm9_v1_chr13_+_46513668_46513668	0.0483687	UAUUGCU	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr16_-_98144201_98144247	0.0464102	UAUUGCU	AK077731|C2cd2|207781|C2 calcium-dependent domain containing 2	BC043688|C2cd2|207781|C2 calcium-dependent domain containing 2	AK017896|C2cd2|207781|C2 calcium-dependent domain containing 2	AK143875|C2cd2|207781|C2 calcium-dependent domain containing 2	AK220454|C2cd2|207781|C2 calcium-dependent domain containing 2	AK086520|C2cd2|207781|C2 calcium-dependent domain containing 2	NM_174847|C2cd2|207781|C2 calcium-dependent domain containing 2
mm9_v1_chr6_+_110595586_110595619	0.041237	UAUUGCU	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr5_+_64551449_64551546	0.036125	UAUUGCU	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr3_+_106904470_106904486	0.0316969	UAUUGCU	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chr12_+_25336138_25336389	0.0204944	UAUUGCU	AK038397|Klf11|194655|Kruppel-like factor 11	AK050156|Klf11|194655|Kruppel-like factor 11	NM_178357|Klf11|194655|Kruppel-like factor 11	BC060642|Klf11|194655|Kruppel-like factor 11	AK161233|Klf11|194655|Kruppel-like factor 11	AK082838|Klf11|194655|Kruppel-like factor 11	AK036618|Klf11|194655|Kruppel-like factor 11	AK089044|Klf11|194655|Kruppel-like factor 11	AK084913|Klf11|194655|Kruppel-like factor 11	AK085319|Klf11|194655|Kruppel-like factor 11	AK054170|Klf11|194655|Kruppel-like factor 11	AJ459773|Klf11|194655|Kruppel-like factor 11
mm9_v1_chr19_+_36629128_36629172	0.0112051	UAUUGCU	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
