mm9_v1_chr2_+_25036276_25036300	5.00385	UCACAGU	AY046077|Nrarp|67122|Notch-regulated ankyrin repeat protein	NM_025980|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC020293|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC048088|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr2_+_181498036_181498036	4.34244	UCACAGU	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chr12_-_28027541_28027588	3.13937	UCACAGU	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr1_-_135975681_135975731	3.02251	UCACAGU	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr14_+_73637697_73637874	2.98747	UCACAGU	NM_175116|Lpar6|67168|lysophosphatidic acid receptor 6	AK032901|Lpar6|67168|lysophosphatidic acid receptor 6	AK011967|Lpar6|67168|lysophosphatidic acid receptor 6	AK169602|Lpar6|67168|lysophosphatidic acid receptor 6	BC047931|Lpar6|67168|lysophosphatidic acid receptor 6	AK008952|Lpar6|67168|lysophosphatidic acid receptor 6	BC057175|Lpar6|67168|lysophosphatidic acid receptor 6	BC069991|Lpar6|67168|lysophosphatidic acid receptor 6
mm9_v1_chr3_+_5218545_5218658	2.7186	UCACAGU	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr1_-_153937364_153937449	2.47737	UCACAGU	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr10_+_79642100_79642260	2.42004	UCACAGU	AK140544|Efna2|13637|ephrin A2	NM_007909|Efna2|13637|ephrin A2
mm9_v1_chr2_-_140497204_140497211	2.40349	UCACAGU	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr13_-_117099629_117099895	2.3948	UCACAGU	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr19_-_12576485_12576634	2.33571	UCACAGU	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr3_+_131748252_131748264	2.31408	UCACAGU	AK031749|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	NM_020265|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	BC096448|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)
mm9_v1_chr4_-_131604821_131605088	2.30873	UCACAGU	BC079875|Epb4.1|269587|erythrocyte protein band 4.1	AK220462|Epb4.1|269587|erythrocyte protein band 4.1	NM_001128606|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr10_+_110357230_110357257	2.26367	UCACAGU	AF037208|Csrp2|13008|cysteine and glycine-rich protein 2	AK010626|Csrp2|13008|cysteine and glycine-rich protein 2	NM_007792|Csrp2|13008|cysteine and glycine-rich protein 2	AK003328|Csrp2|13008|cysteine and glycine-rich protein 2	AK012647|Csrp2|13008|cysteine and glycine-rich protein 2	BC012663|Csrp2|13008|cysteine and glycine-rich protein 2
mm9_v1_chr1_+_19198994_19199078	2.01762	UCACAGU	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr14_-_104867215_104867215	2.01504	UCACAGU	AY706205|Pou4f1|18996|POU domain, class 4, transcription factor 1	NM_011143|Pou4f1|18996|POU domain, class 4, transcription factor 1
mm9_v1_chr3_+_101814059_101814199	2.0128	UCACAGU	S40532|Nhlh2|18072|nescient helix loop helix 2	AK031747|Nhlh2|18072|nescient helix loop helix 2	NM_178777|Nhlh2|18072|nescient helix loop helix 2	AK053837|Nhlh2|18072|nescient helix loop helix 2	AK053046|Nhlh2|18072|nescient helix loop helix 2	AK082728|Nhlh2|18072|nescient helix loop helix 2	AK084160|Nhlh2|18072|nescient helix loop helix 2	AK084308|Nhlh2|18072|nescient helix loop helix 2	BC058413|Nhlh2|18072|nescient helix loop helix 2
mm9_v1_chr2_-_153067043_153067211	1.98494	UCACAGU	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr5_+_28492235_28492251	1.98201	UCACAGU	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr1_+_64579358_64579513	1.89694	UCACAGU	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr9_+_102620096_102620187	1.89407	UCACAGU	AK141348|Amotl2|56332|angiomotin-like 2	AK164819|Amotl2|56332|angiomotin-like 2	NM_019764|Amotl2|56332|angiomotin-like 2	AK077535|Amotl2|56332|angiomotin-like 2	AK169419|Amotl2|56332|angiomotin-like 2	BC035201|Amotl2|56332|angiomotin-like 2	BC027824|Amotl2|56332|angiomotin-like 2
mm9_v1_chr3_+_63780058_63780135	1.89054	UCACAGU	AK143197|Gmps|229363|guanine monophosphate synthetase	NM_001033300|Gmps|229363|guanine monophosphate synthetase	AK169701|Gmps|229363|guanine monophosphate synthetase	AK169043|Gmps|229363|guanine monophosphate synthetase	AK167857|Gmps|229363|guanine monophosphate synthetase	AK049755|Gmps|229363|guanine monophosphate synthetase	BC138411|Gmps|229363|guanine monophosphate synthetase	BC138412|Gmps|229363|guanine monophosphate synthetase	AK168239|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr4_-_6917628_6917956	1.88569	UCACAGU	AK161718|Tox|252838|thymocyte selection-associated high mobility group box	AK161578|Tox|252838|thymocyte selection-associated high mobility group box	AF472514|Tox|252838|thymocyte selection-associated high mobility group box	AK029694|Tox|252838|thymocyte selection-associated high mobility group box	AK133397|Tox|252838|thymocyte selection-associated high mobility group box	BC080732|Tox|252838|thymocyte selection-associated high mobility group box	AK038671|Tox|252838|thymocyte selection-associated high mobility group box	NM_145711|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr16_+_33684551_33684609	1.80886	UCACAGU	AK028518|Heg1|77446|HEG homolog 1 (zebrafish)	AK163128|Heg1|77446|HEG homolog 1 (zebrafish)	NM_175256|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr13_+_98011057_98011069	1.80717	UCACAGU	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr18_-_72510670_72510722	1.79717	UCACAGU	AK157715|Dcc|13176|deleted in colorectal carcinoma	AK090377|Dcc|13176|deleted in colorectal carcinoma	NM_007831|Dcc|13176|deleted in colorectal carcinoma
mm9_v1_chr18_-_33623668_33623692	1.76182	UCACAGU	NM_001109988|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr14_-_65881225_65881304	1.73393	UCACAGU	BC066186|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC103714|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK134261|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK160554|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC050965|Fzd3|14365|frizzled homolog 3 (Drosophila)	NM_021458|Fzd3|14365|frizzled homolog 3 (Drosophila)
mm9_v1_chr13_-_99696254_99696340	1.73012	UCACAGU	AK030580|Tnpo1|238799|transportin 1	AK087194|Tnpo1|238799|transportin 1	AK037001|Tnpo1|238799|transportin 1	AK029953|Tnpo1|238799|transportin 1	NM_178716|Tnpo1|238799|transportin 1
mm9_v1_chr9_+_72510153_72510370	1.70728	UCACAGU	D85414|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	NM_010890|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088767|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK133838|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK144240|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK169582|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088620|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC138813|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK050517|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK080349|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK160570|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK122203|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC080710|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr10_+_127176590_127176697	1.68607	UCACAGU	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr8_-_73905790_73905902	1.67607	UCACAGU	AK131941|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6	NM_010150|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6
mm9_v1_chr3_+_109143558_109143678	1.63645	UCACAGU	AK033253|Vav3|57257|vav 3 oncogene	NM_020505|Vav3|57257|vav 3 oncogene	AK041249|Vav3|57257|vav 3 oncogene
mm9_v1_chr5_+_93522440_93522507	1.59098	UCACAGU	AK166517|Sept11|52398|septin 11	AK171368|Sept11|52398|septin 11	BC064466|Sept11|52398|septin 11	NM_001009818|Sept11|52398|septin 11
mm9_v1_chr13_-_99660903_99660996	1.58871	UCACAGU	BC055372|Tnpo1|238799|transportin 1	AK167049|Tnpo1|238799|transportin 1	AK045132|Tnpo1|238799|transportin 1	NM_001048267|Tnpo1|238799|transportin 1
mm9_v1_chr5_-_103640272_103640352	1.55971	UCACAGU	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr13_-_59777105_59777155	1.55176	UCACAGU	BC011152|Golm1|105348|golgi membrane protein 1	AK167646|Golm1|105348|golgi membrane protein 1	AK160475|Golm1|105348|golgi membrane protein 1	BC098486|Golm1|105348|golgi membrane protein 1	NM_001035122|Golm1|105348|golgi membrane protein 1	NM_027307|Golm1|105348|golgi membrane protein 1	AK133865|Golm1|105348|golgi membrane protein 1
mm9_v1_chr19_+_40905768_40905801	1.46175	UCACAGU	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr11_+_98821784_98821900	1.44058	UCACAGU	AK170956|Rara|19401|retinoic acid receptor, alpha	NM_001176528|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr4_+_47366162_47366183	1.43691	UCACAGU	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr18_+_44540137_44540241	1.43018	UCACAGU	AK153105|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	NM_027490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK008609|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK017809|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK166560|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK010490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK152160|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153264|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153310|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)
mm9_v1_chr13_+_89680240_89680277	1.40745	UCACAGU	AK032750|Hapln1|12950|hyaluronan and proteoglycan link protein 1	NM_013500|Hapln1|12950|hyaluronan and proteoglycan link protein 1
mm9_v1_chr6_+_88148657_88148753	1.37455	UCACAGU	AK154981|Gata2|14461|GATA binding protein 2	NM_008090|Gata2|14461|GATA binding protein 2	AK004551|Gata2|14461|GATA binding protein 2	AK154792|Gata2|14461|GATA binding protein 2	BC107009|Gata2|14461|GATA binding protein 2
mm9_v1_chr1_-_90598670_90598781	1.35646	UCACAGU	AK080335|Arl4c|320982|ADP-ribosylation factor-like 4C	AK080380|Arl4c|320982|ADP-ribosylation factor-like 4C	AK080743|Arl4c|320982|ADP-ribosylation factor-like 4C	BC055769|Arl4c|320982|ADP-ribosylation factor-like 4C	NM_177305|Arl4c|320982|ADP-ribosylation factor-like 4C
mm9_v1_chrX_-_11657678_11657678	1.35582	UCACAGU	AK053309|Bcor|71458|BCL6 interacting corepressor	NM_029510|Bcor|71458|BCL6 interacting corepressor	NM_175044|Bcor|71458|BCL6 interacting corepressor	NM_175045|Bcor|71458|BCL6 interacting corepressor	NM_175046|Bcor|71458|BCL6 interacting corepressor
mm9_v1_chr6_-_112897259_112897274	1.35571	UCACAGU	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr5_+_73882264_73882364	1.34747	UCACAGU	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr4_-_122638401_122638432	1.34008	UCACAGU	BC060526|Mfsd2a|76574|major facilitator superfamily domain containing 2A	BC046793|Mfsd2a|76574|major facilitator superfamily domain containing 2A	AK006096|Mfsd2a|76574|major facilitator superfamily domain containing 2A	NM_029662|Mfsd2a|76574|major facilitator superfamily domain containing 2A
mm9_v1_chr4_-_131631226_131631229	1.32382	UCACAGU	NM_001128607|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr15_-_60656465_60656634	1.32098	UCACAGU	AK139928|Fam84b|399603|family with sequence similarity 84, member B	NM_001162926|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr9_-_36954842_36954852	1.30948	UCACAGU	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr15_+_102236709_102236810	1.30064	UCACAGU	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr3_-_86978431_86978668	1.29394	UCACAGU	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr4_-_154010868_154010981	1.28489	UCACAGU	AB078338|Prdm16|70673|PR domain containing 16	AK083829|Prdm16|70673|PR domain containing 16	BC053082|Prdm16|70673|PR domain containing 16	BC059838|Prdm16|70673|PR domain containing 16	NM_001177995|Prdm16|70673|PR domain containing 16	NM_027504|Prdm16|70673|PR domain containing 16
mm9_v1_chr6_+_15135505_15135508	1.27542	UCACAGU	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr11_+_3190334_3190510	1.20953	UCACAGU	AK166189|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	BC043035|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	AB029397|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	NM_019574|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1
mm9_v1_chr19_-_34329804_34329828	1.20923	UCACAGU	X13297|Acta2|11475|actin, alpha 2, smooth muscle, aorta	BC064800|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK017374|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK156331|Acta2|11475|actin, alpha 2, smooth muscle, aorta	NM_007392|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr18_-_34166859_34166859	1.17949	UCACAGU	NM_013512|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr7_+_119822831_119822885	1.14631	UCACAGU	S74227|Tead1|21676|TEA domain family member 1	AK140307|Tead1|21676|TEA domain family member 1	NM_001166584|Tead1|21676|TEA domain family member 1	NM_009346|Tead1|21676|TEA domain family member 1	AK148375|Tead1|21676|TEA domain family member 1
mm9_v1_chr7_+_140829357_140829384	1.14111	UCACAGU	NM_178115|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene	AK052387|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene
mm9_v1_chr1_-_12980994_12981257	1.13832	UCACAGU	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr3_-_89141938_89141960	1.13222	UCACAGU	AK012195|Efna4|13639|ephrin A4	AK142604|Efna4|13639|ephrin A4	NM_007910|Efna4|13639|ephrin A4	AK144085|Efna4|13639|ephrin A4
mm9_v1_chr8_-_93837120_93837168	1.11914	UCACAGU	AK029911|Rpgrip1l|244585|Rpgrip1-like	NM_173431|Rpgrip1l|244585|Rpgrip1-like	AJ344253|Rpgrip1l|244585|Rpgrip1-like
mm9_v1_chr17_-_47970167_47970209	1.11751	UCACAGU	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr11_-_85048564_85048637	1.11709	UCACAGU	BC018442|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	BC019152|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK133853|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	NM_025825|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK004888|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm9_v1_chr9_+_44187572_44187715	1.10826	UCACAGU	NM_021395|Hyou1|12282|hypoxia up-regulated 1	AK128937|Hyou1|12282|hypoxia up-regulated 1	AK155721|Hyou1|12282|hypoxia up-regulated 1	AK145857|Hyou1|12282|hypoxia up-regulated 1	AK171769|Hyou1|12282|hypoxia up-regulated 1	BC058255|Hyou1|12282|hypoxia up-regulated 1	AK157949|Hyou1|12282|hypoxia up-regulated 1	BC019785|Hyou1|12282|hypoxia up-regulated 1	BC050107|Hyou1|12282|hypoxia up-regulated 1
mm9_v1_chr11_-_100389196_100389291	1.08606	UCACAGU	AK132755|Acly|104112|ATP citrate lyase	BC056378|Acly|104112|ATP citrate lyase	NM_134037|Acly|104112|ATP citrate lyase	AK149660|Acly|104112|ATP citrate lyase
mm9_v1_chr10_+_68996455_68996596	1.05566	UCACAGU	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr2_-_168592528_168592700	1.05112	UCACAGU	AY463371|Sall4|99377|sal-like 4 (Drosophila)	AY463372|Sall4|99377|sal-like 4 (Drosophila)	AY463373|Sall4|99377|sal-like 4 (Drosophila)	AK049188|Sall4|99377|sal-like 4 (Drosophila)	AK145388|Sall4|99377|sal-like 4 (Drosophila)	BC099928|Sall4|99377|sal-like 4 (Drosophila)	BC053716|Sall4|99377|sal-like 4 (Drosophila)	NM_175303|Sall4|99377|sal-like 4 (Drosophila)	NM_201395|Sall4|99377|sal-like 4 (Drosophila)	NM_201396|Sall4|99377|sal-like 4 (Drosophila)
mm9_v1_chr16_+_44173356_44173509	1.05062	UCACAGU	NM_001029889|Gm608|207806|predicted gene 608
mm9_v1_chr8_-_28285056_28285121	1.04999	UCACAGU	AK014696|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK089792|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC125400|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC132094|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK166735|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK086797|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK151024|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK030769|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_001080813|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_029423|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)
mm9_v1_chr13_-_34437042_34437162	1.04696	UCACAGU	AK147397|Slc22a23|73102|solute carrier family 22, member 23	NM_001033167|Slc22a23|73102|solute carrier family 22, member 23
mm9_v1_chr12_+_110691637_110691748	1.04367	UCACAGU	AK162458|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190703|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190704|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190705|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_010052|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK005522|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK164935|Dlk1|13386|delta-like 1 homolog (Drosophila)	L12721|Dlk1|13386|delta-like 1 homolog (Drosophila)	BC052159|Dlk1|13386|delta-like 1 homolog (Drosophila)	U15980|Dlk1|13386|delta-like 1 homolog (Drosophila)	EU434917|Dlk1|13386|delta-like 1 homolog (Drosophila)
mm9_v1_chr5_-_23536487_23536520	0.999397	UCACAGU	BC060692|Fam126a|84652|family with sequence similarity 126, member A	AK155209|Fam126a|84652|family with sequence similarity 126, member A	NM_053090|Fam126a|84652|family with sequence similarity 126, member A
mm9_v1_chr1_-_176851949_176851953	0.998424	UCACAGU	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr3_-_142544883_142544984	0.998188	UCACAGU	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr2_-_9800211_9800245	0.989482	UCACAGU	AK156634|Gata3|14462|GATA binding protein 3	AK053728|Gata3|14462|GATA binding protein 3	AK090089|Gata3|14462|GATA binding protein 3	AK155549|Gata3|14462|GATA binding protein 3	NM_008091|Gata3|14462|GATA binding protein 3
mm9_v1_chrX_-_6765768_6765839	0.97021	UCACAGU	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr5_-_135870365_135870452	0.969577	UCACAGU	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr16_-_35490849_35490973	0.967427	UCACAGU	BC009151|Pdia5|72599|protein disulfide isomerase associated 5	NM_028295|Pdia5|72599|protein disulfide isomerase associated 5
mm9_v1_chr1_+_168309297_168309436	0.959395	UCACAGU	NM_030245|Tada1|27878|transcriptional adaptor 1	BC027337|Tada1|27878|transcriptional adaptor 1	AK151132|Tada1|27878|transcriptional adaptor 1
mm9_v1_chr12_-_47919695_47919761	0.94771	UCACAGU	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr2_-_167457476_167457545	0.937984	UCACAGU	AK012021|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	BC003449|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	AK158230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	NM_023230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1
mm9_v1_chr5_-_110815980_110816158	0.928998	UCACAGU	BC151196|Fbrsl1|381668|fibrosin-like 1	AK031967|Fbrsl1|381668|fibrosin-like 1	NM_028596|Fbrsl1|381668|fibrosin-like 1
mm9_v1_chr4_-_140695648_140695720	0.924487	UCACAGU	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr11_-_97141747_97141925	0.923172	UCACAGU	BC009653|Npepps|19155|aminopeptidase puromycin sensitive	AK138772|Npepps|19155|aminopeptidase puromycin sensitive	U35646|Npepps|19155|aminopeptidase puromycin sensitive	BC086798|Npepps|19155|aminopeptidase puromycin sensitive	BC098212|Npepps|19155|aminopeptidase puromycin sensitive	NM_008942|Npepps|19155|aminopeptidase puromycin sensitive
mm9_v1_chr2_+_27532692_27532866	0.90258	UCACAGU	AK144675|Rxra|20181|retinoid X receptor alpha	NM_011305|Rxra|20181|retinoid X receptor alpha	M84817|Rxra|20181|retinoid X receptor alpha	BC138800|Rxra|20181|retinoid X receptor alpha	BC138802|Rxra|20181|retinoid X receptor alpha	X66223|Rxra|20181|retinoid X receptor alpha	AK031034|Rxra|20181|retinoid X receptor alpha
mm9_v1_chr18_-_89063572_89063675	0.881923	UCACAGU	BC094443|Socs6|54607|suppressor of cytokine signaling 6	AK028701|Socs6|54607|suppressor of cytokine signaling 6	AK083341|Socs6|54607|suppressor of cytokine signaling 6	AK028665|Socs6|54607|suppressor of cytokine signaling 6	AK031164|Socs6|54607|suppressor of cytokine signaling 6	AK044946|Socs6|54607|suppressor of cytokine signaling 6	NM_018821|Socs6|54607|suppressor of cytokine signaling 6	BC085245|Socs6|54607|suppressor of cytokine signaling 6	AK031929|Socs6|54607|suppressor of cytokine signaling 6	AK019993|Socs6|54607|suppressor of cytokine signaling 6
mm9_v1_chr17_-_31992708_31992780	0.881887	UCACAGU	U11494|Sik1|17691|salt inducible kinase 1	AK141817|Sik1|17691|salt inducible kinase 1	NM_010831|Sik1|17691|salt inducible kinase 1	AK172427|Sik1|17691|salt inducible kinase 1
mm9_v1_chr15_+_96117952_96118007	0.877211	UCACAGU	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr8_-_25549415_25549421	0.876704	UCACAGU	AK007441|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene	NM_026931|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene
mm9_v1_chr10_+_110182506_110182701	0.874005	UCACAGU	AK051521|E2f7|52679|E2F transcription factor 7	NM_178609|E2f7|52679|E2F transcription factor 7	AK031078|E2f7|52679|E2F transcription factor 7	AK041481|E2f7|52679|E2F transcription factor 7	AY463359|E2f7|52679|E2F transcription factor 7	AK143686|E2f7|52679|E2F transcription factor 7	BC145429|E2f7|52679|E2F transcription factor 7	BC150772|E2f7|52679|E2F transcription factor 7	AK045040|E2f7|52679|E2F transcription factor 7
mm9_v1_chr14_+_26513611_26513728	0.869769	UCACAGU	AK028349|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	BC004041|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	NM_134084|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)
mm9_v1_chr11_+_105042843_105042862	0.867965	UCACAGU	AK165667|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_001112705|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_011903|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)
mm9_v1_chr6_+_34659440_34659540	0.864885	UCACAGU	NM_145575|Cald1|109624|caldesmon 1	BC019435|Cald1|109624|caldesmon 1	AK014755|Cald1|109624|caldesmon 1	AK160593|Cald1|109624|caldesmon 1
mm9_v1_chr15_-_97923632_97923835	0.860026	UCACAGU	AK028565|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK088597|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK138013|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK035581|Senp1|223870|SUMO1/sentrin specific peptidase 1	NM_144851|Senp1|223870|SUMO1/sentrin specific peptidase 1
mm9_v1_chr1_-_51535232_51535262	0.857784	UCACAGU	AK167541|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK167652|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK028886|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK031015|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK042351|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK049396|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK051607|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077226|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077767|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK079434|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK083915|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK163613|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK166300|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AY880264|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	NM_028696|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK076824|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A
mm9_v1_chr3_-_36470904_36470919	0.855251	UCACAGU	NM_009828|Ccna2|12428|cyclin A2	AK044924|Ccna2|12428|cyclin A2
mm9_v1_chr15_-_103197178_103197295	0.836182	UCACAGU	BC053431|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	NM_010577|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC050943|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC059829|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)
mm9_v1_chr5_-_134790544_134790615	0.832031	UCACAGU	AF017085|Gtf2i|14886|general transcription factor II I	AY030290|Gtf2i|14886|general transcription factor II I	AY030291|Gtf2i|14886|general transcription factor II I	AY030292|Gtf2i|14886|general transcription factor II I	AY030293|Gtf2i|14886|general transcription factor II I	AK147201|Gtf2i|14886|general transcription factor II I	BC053044|Gtf2i|14886|general transcription factor II I	NM_001080746|Gtf2i|14886|general transcription factor II I	NM_001080747|Gtf2i|14886|general transcription factor II I	NM_001080748|Gtf2i|14886|general transcription factor II I	NM_001080749|Gtf2i|14886|general transcription factor II I	NM_010365|Gtf2i|14886|general transcription factor II I
mm9_v1_chr1_-_159342713_159342735	0.829246	UCACAGU	AK039584|Rasal2|226525|RAS protein activator like 2	NM_177644|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr10_-_90545483_90545514	0.826618	UCACAGU	AK220340|Apaf1|11783|apoptotic peptidase activating factor 1	NM_001042558|Apaf1|11783|apoptotic peptidase activating factor 1	NM_009684|Apaf1|11783|apoptotic peptidase activating factor 1	BC045144|Apaf1|11783|apoptotic peptidase activating factor 1
mm9_v1_chr9_-_106691395_106691543	0.824027	UCACAGU	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr11_-_82684653_82684724	0.808343	UCACAGU	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr8_-_60131768_60131885	0.805095	UCACAGU	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr1_-_145624156_145624181	0.803363	UCACAGU	AK076167|Trove2|20822|TROVE domain family, member 2	NM_013835|Trove2|20822|TROVE domain family, member 2
mm9_v1_chr18_+_83080270_83080270	0.799813	UCACAGU	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr18_-_33623400_33623430	0.793727	UCACAGU	NM_001109989|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr2_+_28496752_28496773	0.791902	UCACAGU	AK030318|Tsc1|64930|tuberous sclerosis 1	AJ271912|Tsc1|64930|tuberous sclerosis 1	AK147428|Tsc1|64930|tuberous sclerosis 1	NM_022887|Tsc1|64930|tuberous sclerosis 1	AK083363|Tsc1|64930|tuberous sclerosis 1	AK078140|Tsc1|64930|tuberous sclerosis 1	AK154416|Tsc1|64930|tuberous sclerosis 1
mm9_v1_chr1_+_162836541_162836569	0.791163	UCACAGU	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chr5_-_33196860_33196908	0.789769	UCACAGU	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr19_+_8831563_8831725	0.782714	UCACAGU	BC005594|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	NM_016813|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK086527|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK079583|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK133883|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK143640|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK167518|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AF093140|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK077644|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK088634|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK199824|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)
mm9_v1_chr2_-_181333786_181333936	0.778981	UCACAGU	AK053884|Samd10|229011|sterile alpha motif domain containing 10	AK053048|Samd10|229011|sterile alpha motif domain containing 10	BC052921|Samd10|229011|sterile alpha motif domain containing 10	NM_172676|Samd10|229011|sterile alpha motif domain containing 10	AK171151|Samd10|229011|sterile alpha motif domain containing 10	BC019475|Samd10|229011|sterile alpha motif domain containing 10	AK164204|Samd10|229011|sterile alpha motif domain containing 10
mm9_v1_chr2_+_32390780_32390878	0.777368	UCACAGU	AK131145|Fam102a|98952|family with sequence similarity 102, member A	AK170536|Fam102a|98952|family with sequence similarity 102, member A	AK049032|Fam102a|98952|family with sequence similarity 102, member A	NM_153560|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr15_-_90880241_90880381	0.767428	UCACAGU	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr5_+_151476361_151476427	0.744972	UCACAGU	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chrX_-_159267249_159267385	0.740481	UCACAGU	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr10_+_43198945_43198945	0.732349	UCACAGU	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr4_+_125781197_125781263	0.729111	UCACAGU	NM_001145827|Stk40|74178|serine/threonine kinase 40	NM_028800|Stk40|74178|serine/threonine kinase 40	AK154780|Stk40|74178|serine/threonine kinase 40	AY336057|Stk40|74178|serine/threonine kinase 40	BC046981|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr4_-_136391849_136391926	0.724916	UCACAGU	BC043088|Ephb2|13844|Eph receptor B2	NM_010142|Ephb2|13844|Eph receptor B2	BC062924|Ephb2|13844|Eph receptor B2	AK017630|Ephb2|13844|Eph receptor B2	L25890|Ephb2|13844|Eph receptor B2
mm9_v1_chr11_+_98799013_98799173	0.716913	UCACAGU	S56656|Rara|19401|retinoic acid receptor, alpha	BC040383|Rara|19401|retinoic acid receptor, alpha	NM_001177302|Rara|19401|retinoic acid receptor, alpha	AK154623|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr8_-_3279545_3279616	0.712413	UCACAGU	AK052187|Insr|16337|insulin receptor	NM_010568|Insr|16337|insulin receptor
mm9_v1_chr3_+_152058937_152059038	0.710452	UCACAGU	NM_001080755|Zzz3|108946|zinc finger, ZZ domain containing 3	AK131150|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chr10_-_70700764_70701027	0.709398	UCACAGU	U57939|Tfam|21780|transcription factor A, mitochondrial	AK004857|Tfam|21780|transcription factor A, mitochondrial	BC001987|Tfam|21780|transcription factor A, mitochondrial	BC083084|Tfam|21780|transcription factor A, mitochondrial	AK050446|Tfam|21780|transcription factor A, mitochondrial	AK167348|Tfam|21780|transcription factor A, mitochondrial	NM_009360|Tfam|21780|transcription factor A, mitochondrial	AK163563|Tfam|21780|transcription factor A, mitochondrial	AK017974|Tfam|21780|transcription factor A, mitochondrial	AK161747|Tfam|21780|transcription factor A, mitochondrial	AK167777|Tfam|21780|transcription factor A, mitochondrial	AK169808|Tfam|21780|transcription factor A, mitochondrial	U63859|Tfam|21780|transcription factor A, mitochondrial	U63858|Tfam|21780|transcription factor A, mitochondrial	U63712|Tfam|21780|transcription factor A, mitochondrial
mm9_v1_chr7_-_54263783_54263783	0.708977	UCACAGU	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr9_+_65478364_65478420	0.701333	UCACAGU	AK144659|Rbpms2|71973|RNA binding protein with multiple splicing 2	AK156633|Rbpms2|71973|RNA binding protein with multiple splicing 2	BC021788|Rbpms2|71973|RNA binding protein with multiple splicing 2	NM_028030|Rbpms2|71973|RNA binding protein with multiple splicing 2
mm9_v1_chr15_-_38008565_38008625	0.700862	UCACAGU	NM_001081359|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5	NM_001112721|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chr18_-_9450104_9450192	0.696357	UCACAGU	BC023321|Ccny|67974|cyclin Y	AK028696|Ccny|67974|cyclin Y	NM_026484|Ccny|67974|cyclin Y	AK014201|Ccny|67974|cyclin Y
mm9_v1_chr2_-_68309996_68310080	0.692754	UCACAGU	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr11_-_97049185_97049278	0.691115	UCACAGU	BC055115|Kpnb1|16211|karyopherin (importin) beta 1	AK077709|Kpnb1|16211|karyopherin (importin) beta 1	NM_008379|Kpnb1|16211|karyopherin (importin) beta 1	AK147175|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr3_+_151873407_151873495	0.6911	UCACAGU	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr3_-_32264572_32264614	0.686686	UCACAGU	NM_009517|Zmat3|22401|zinc finger matrin type 3	BC023726|Zmat3|22401|zinc finger matrin type 3
mm9_v1_chr3_+_37538808_37538883	0.682069	UCACAGU	BC053428|Spry1|24063|sprouty homolog 1 (Drosophila)	NM_011896|Spry1|24063|sprouty homolog 1 (Drosophila)	AK014578|Spry1|24063|sprouty homolog 1 (Drosophila)	AK140405|Spry1|24063|sprouty homolog 1 (Drosophila)	BC039139|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr8_+_123061308_123061392	0.678219	UCACAGU	NM_001145896|Gse1|382034|genetic suppressor element 1	AK154829|Gse1|382034|genetic suppressor element 1	AK042915|Gse1|382034|genetic suppressor element 1
mm9_v1_chr9_-_70351520_70351611	0.675514	UCACAGU	AK171932|Rnf111|93836|ring finger 111	AF330197|Rnf111|93836|ring finger 111	NM_033604|Rnf111|93836|ring finger 111
mm9_v1_chr4_-_151370212_151370359	0.67441	UCACAGU	AY069976|Phf13|230936|PHD finger protein 13	BC029632|Phf13|230936|PHD finger protein 13	BC059282|Phf13|230936|PHD finger protein 13	NM_172705|Phf13|230936|PHD finger protein 13	AK132066|Phf13|230936|PHD finger protein 13
mm9_v1_chr11_+_72861327_72861399	0.666931	UCACAGU	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr11_-_78510874_78510941	0.666089	UCACAGU	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr17_-_57170896_57170957	0.655153	UCACAGU	AK077415|Khsrp|16549|KH-type splicing regulatory protein	AK156541|Khsrp|16549|KH-type splicing regulatory protein	NM_010613|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr13_-_96145269_96145292	0.65024	UCACAGU	AK017248|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AK008168|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AK008174|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AK008399|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	AY500995|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	BC052410|Aggf1|66549|angiogenic factor with G patch and FHA domains 1	NM_025630|Aggf1|66549|angiogenic factor with G patch and FHA domains 1
mm9_v1_chr2_+_68699498_68699613	0.642819	UCACAGU	AK081354|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK135798|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK151848|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK152417|Lass6|241447|LAG1 homolog, ceramide synthase 6	BC057629|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK028849|Lass6|241447|LAG1 homolog, ceramide synthase 6	NM_172856|Lass6|241447|LAG1 homolog, ceramide synthase 6
mm9_v1_chr3_+_51219882_51219968	0.640644	UCACAGU	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr9_+_21528037_21528221	0.638891	UCACAGU	NM_010700|Ldlr|16835|low density lipoprotein receptor	AK076243|Ldlr|16835|low density lipoprotein receptor	AK151968|Ldlr|16835|low density lipoprotein receptor	BC053041|Ldlr|16835|low density lipoprotein receptor	AK170264|Ldlr|16835|low density lipoprotein receptor	AK149950|Ldlr|16835|low density lipoprotein receptor	AK160006|Ldlr|16835|low density lipoprotein receptor	AK161104|Ldlr|16835|low density lipoprotein receptor	AK166466|Ldlr|16835|low density lipoprotein receptor	AK018697|Ldlr|16835|low density lipoprotein receptor	AK152103|Ldlr|16835|low density lipoprotein receptor	X64414|Ldlr|16835|low density lipoprotein receptor	BC019207|Ldlr|16835|low density lipoprotein receptor	AK184620|Ldlr|16835|low density lipoprotein receptor	AF425607|Ldlr|16835|low density lipoprotein receptor	Z19521|Ldlr|16835|low density lipoprotein receptor
mm9_v1_chr18_+_24363784_24363941	0.637856	UCACAGU	NM_013814|Galnt1|14423|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	BC056215|Galnt1|14423|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm9_v1_chr7_-_138553991_138554026	0.629108	UCACAGU	BC048183|Ikzf5|67143|IKAROS family zinc finger 5	BC058537|Ikzf5|67143|IKAROS family zinc finger 5	NM_175115|Ikzf5|67143|IKAROS family zinc finger 5	AK153883|Ikzf5|67143|IKAROS family zinc finger 5	AK033716|Ikzf5|67143|IKAROS family zinc finger 5	BC089455|Ikzf5|67143|IKAROS family zinc finger 5	AK169384|Ikzf5|67143|IKAROS family zinc finger 5
mm9_v1_chr6_+_17413930_17414106	0.628191	UCACAGU	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr2_+_18598644_18598801	0.624939	UCACAGU	M64279|Bmi1|12151|Bmi1 polycomb ring finger oncogene	NM_007552|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr17_+_28938070_28938070	0.624647	UCACAGU	AK147555|Brpf3|268936|bromodomain and PHD finger containing, 3	NM_001081315|Brpf3|268936|bromodomain and PHD finger containing, 3
mm9_v1_chr5_-_108304062_108304125	0.62199	UCACAGU	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr2_-_44968728_44968798	0.621729	UCACAGU	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr9_-_43047862_43047949	0.621403	UCACAGU	BC026022|Oaf|102644|OAF homolog (Drosophila)	BC034836|Oaf|102644|OAF homolog (Drosophila)	AK150279|Oaf|102644|OAF homolog (Drosophila)	BC025514|Oaf|102644|OAF homolog (Drosophila)	AK051349|Oaf|102644|OAF homolog (Drosophila)	NM_178644|Oaf|102644|OAF homolog (Drosophila)
mm9_v1_chr12_+_80130149_80130201	0.621065	UCACAGU	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr16_+_27388907_27389196	0.614183	UCACAGU	BC144895|Ccdc50|67501|coiled-coil domain containing 50	BC144898|Ccdc50|67501|coiled-coil domain containing 50	BC145933|Ccdc50|67501|coiled-coil domain containing 50	BC145935|Ccdc50|67501|coiled-coil domain containing 50	NM_001025615|Ccdc50|67501|coiled-coil domain containing 50	NM_026202|Ccdc50|67501|coiled-coil domain containing 50	AK162434|Ccdc50|67501|coiled-coil domain containing 50	AK016827|Ccdc50|67501|coiled-coil domain containing 50	AK151672|Ccdc50|67501|coiled-coil domain containing 50	AK147820|Ccdc50|67501|coiled-coil domain containing 50	AK077557|Ccdc50|67501|coiled-coil domain containing 50	AK165214|Ccdc50|67501|coiled-coil domain containing 50	AK012190|Ccdc50|67501|coiled-coil domain containing 50	AJ534985|Ccdc50|67501|coiled-coil domain containing 50
mm9_v1_chr10_+_52410306_52410508	0.613247	UCACAGU	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr8_+_123059756_123059756	0.613186	UCACAGU	AK033263|Gse1|382034|genetic suppressor element 1	NM_001145897|Gse1|382034|genetic suppressor element 1
mm9_v1_chr3_-_126701367_126701380	0.60869	UCACAGU	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr15_-_96291163_96291288	0.607822	UCACAGU	AK129478|Scaf11|72193|SR-related CTD-associated factor 11	AK034674|Scaf11|72193|SR-related CTD-associated factor 11	BC058682|Scaf11|72193|SR-related CTD-associated factor 11	NM_028148|Scaf11|72193|SR-related CTD-associated factor 11
mm9_v1_chr2_+_167906462_167906503	0.60702	UCACAGU	NM_021409|Pard6b|58220|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm9_v1_chr11_-_79068138_79068204	0.604158	UCACAGU	AK150600|Wsb1|78889|WD repeat and SOCS box-containing 1	AK159905|Wsb1|78889|WD repeat and SOCS box-containing 1	AK146752|Wsb1|78889|WD repeat and SOCS box-containing 1	AK150394|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167942|Wsb1|78889|WD repeat and SOCS box-containing 1	AK169058|Wsb1|78889|WD repeat and SOCS box-containing 1	AK019206|Wsb1|78889|WD repeat and SOCS box-containing 1	AK152545|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167174|Wsb1|78889|WD repeat and SOCS box-containing 1	AK145974|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167394|Wsb1|78889|WD repeat and SOCS box-containing 1	AK168468|Wsb1|78889|WD repeat and SOCS box-containing 1	AK168565|Wsb1|78889|WD repeat and SOCS box-containing 1	NM_019653|Wsb1|78889|WD repeat and SOCS box-containing 1
mm9_v1_chr11_+_98798970_98799011	0.602742	UCACAGU	X56572|Rara|19401|retinoic acid receptor, alpha	NM_009024|Rara|19401|retinoic acid receptor, alpha	BC010216|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr13_-_64376186_64376295	0.598444	UCACAGU	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr14_-_35315715_35315752	0.597856	UCACAGU	NM_009758|Bmpr1a|12166|bone morphogenetic protein receptor, type 1A	AK132051|Bmpr1a|12166|bone morphogenetic protein receptor, type 1A
mm9_v1_chr1_+_135142673_135142702	0.596012	UCACAGU	NM_001160268|Plekha6|240753|pleckstrin homology domain containing, family A member 6	NM_182930|Plekha6|240753|pleckstrin homology domain containing, family A member 6	BC054547|Plekha6|240753|pleckstrin homology domain containing, family A member 6	AK173074|Plekha6|240753|pleckstrin homology domain containing, family A member 6
mm9_v1_chr8_+_112392441_112392545	0.584868	UCACAGU	AK165088|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048472|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117961|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	NM_001122594|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117962|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048260|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2
mm9_v1_chr9_-_62994774_62994817	0.57878	UCACAGU	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr1_+_95700522_95700570	0.569979	UCACAGU	AK028397|Ing5|66262|inhibitor of growth family, member 5	NM_025454|Ing5|66262|inhibitor of growth family, member 5	AK007536|Ing5|66262|inhibitor of growth family, member 5	BC064674|Ing5|66262|inhibitor of growth family, member 5	AK009312|Ing5|66262|inhibitor of growth family, member 5	AK028010|Ing5|66262|inhibitor of growth family, member 5	AK145695|Ing5|66262|inhibitor of growth family, member 5
mm9_v1_chr2_-_63936044_63936094	0.566278	UCACAGU	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr11_+_98657082_98657130	0.56546	UCACAGU	BC058629|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	NM_028722|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC043039|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	AK053719|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC055715|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr11_-_98010872_98010958	0.560735	UCACAGU	AK220232|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK161566|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK144786|Fbxl20|72194|F-box and leucine-rich repeat protein 20	NM_028149|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK012109|Fbxl20|72194|F-box and leucine-rich repeat protein 20
mm9_v1_chr15_-_73015345_73015397	0.558823	UCACAGU	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr7_+_56214442_56214485	0.558609	UCACAGU	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr15_-_103045710_103045798	0.554716	UCACAGU	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr2_-_120389559_120389604	0.552583	UCACAGU	AK147887|Zfp106|20402|zinc finger protein 106	AK089359|Zfp106|20402|zinc finger protein 106	AK155019|Zfp106|20402|zinc finger protein 106	NM_011743|Zfp106|20402|zinc finger protein 106
mm9_v1_chr14_+_47502637_47502773	0.550031	UCACAGU	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr14_-_109313447_109313461	0.547429	UCACAGU	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr6_-_134516930_134517009	0.547368	UCACAGU	BC060704|Lrp6|16974|low density lipoprotein receptor-related protein 6	NM_008514|Lrp6|16974|low density lipoprotein receptor-related protein 6
mm9_v1_chr5_-_25004598_25004626	0.547358	UCACAGU	AK044828|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	NM_001081383|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	AK087368|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chrX_-_53851046_53851096	0.545285	UCACAGU	EU069461|Mmgt1|236792|membrane magnesium transporter 1	AK049689|Mmgt1|236792|membrane magnesium transporter 1	AK036253|Mmgt1|236792|membrane magnesium transporter 1	NM_146234|Mmgt1|236792|membrane magnesium transporter 1
mm9_v1_chr3_+_61168428_61168660	0.54474	UCACAGU	NM_028712|Rap2b|74012|RAP2B, member of RAS oncogene family	AK045030|Rap2b|74012|RAP2B, member of RAS oncogene family	AK014462|Rap2b|74012|RAP2B, member of RAS oncogene family	AK042941|Rap2b|74012|RAP2B, member of RAS oncogene family	AK163186|Rap2b|74012|RAP2B, member of RAS oncogene family	AK150187|Rap2b|74012|RAP2B, member of RAS oncogene family	BC046528|Rap2b|74012|RAP2B, member of RAS oncogene family
mm9_v1_chr15_+_80629020_80629144	0.54208	UCACAGU	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr8_+_63702967_63703040	0.5403	UCACAGU	NM_021506|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060113|Sh3rf1|59009|SH3 domain containing ring finger 1	BC060696|Sh3rf1|59009|SH3 domain containing ring finger 1	AK088003|Sh3rf1|59009|SH3 domain containing ring finger 1	AK148137|Sh3rf1|59009|SH3 domain containing ring finger 1
mm9_v1_chr15_+_58247016_58247063	0.528749	UCACAGU	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr10_-_20444654_20444883	0.528526	UCACAGU	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr2_-_115890747_115890848	0.526175	UCACAGU	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr3_-_58329780_58329826	0.524755	UCACAGU	NM_030685|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr17_+_43938789_43938843	0.524581	UCACAGU	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr4_+_114761312_114761366	0.523301	UCACAGU	NM_001164557|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_001164558|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_026018|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK007936|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK008253|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK012305|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr7_-_54213800_54213896	0.51689	UCACAGU	AK018394|Uevld|54122|UEV and lactate/malate dehyrogenase domains	AK155685|Uevld|54122|UEV and lactate/malate dehyrogenase domains	AK154536|Uevld|54122|UEV and lactate/malate dehyrogenase domains	U97571|Uevld|54122|UEV and lactate/malate dehyrogenase domains	NM_001040695|Uevld|54122|UEV and lactate/malate dehyrogenase domains	BC054796|Uevld|54122|UEV and lactate/malate dehyrogenase domains
mm9_v1_chr4_+_123582074_123582311	0.516084	UCACAGU	BC048478|Mycbp|56309|c-myc binding protein	AK033289|Mycbp|56309|c-myc binding protein	AK077633|Mycbp|56309|c-myc binding protein	AK037661|Mycbp|56309|c-myc binding protein	AK077762|Mycbp|56309|c-myc binding protein	AK077995|Mycbp|56309|c-myc binding protein	AK145773|Mycbp|56309|c-myc binding protein	NM_019660|Mycbp|56309|c-myc binding protein	BC028344|Mycbp|56309|c-myc binding protein	AB015858|Mycbp|56309|c-myc binding protein
mm9_v1_chr3_-_153388047_153388152	0.506233	UCACAGU	BC131987|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC132317|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC058387|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	AK034804|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	NM_011372|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	Y11342|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm9_v1_chr19_-_28085534_28085655	0.504207	UCACAGU	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr4_+_13670425_13670448	0.500885	UCACAGU	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr13_-_95992994_95993009	0.497161	UCACAGU	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr5_-_5380077_5380250	0.49617	UCACAGU	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr6_+_51494521_51494550	0.490594	UCACAGU	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr2_+_102498839_102498845	0.487561	UCACAGU	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr14_-_73109722_73109912	0.486067	UCACAGU	AK089380|Fndc3a|319448|fibronectin type III domain containing 3A	AK032733|Fndc3a|319448|fibronectin type III domain containing 3A	AK164398|Fndc3a|319448|fibronectin type III domain containing 3A	AK048586|Fndc3a|319448|fibronectin type III domain containing 3A	DQ192036|Fndc3a|319448|fibronectin type III domain containing 3A	NM_207636|Fndc3a|319448|fibronectin type III domain containing 3A
mm9_v1_chr7_-_144506112_144506127	0.485145	UCACAGU	AK220542|Ebf3|13593|early B-cell factor 3	NM_001113414|Ebf3|13593|early B-cell factor 3	NM_001113415|Ebf3|13593|early B-cell factor 3	NM_010096|Ebf3|13593|early B-cell factor 3
mm9_v1_chr5_-_90795190_90795275	0.485123	UCACAGU	AK031350|Ankrd17|81702|ankyrin repeat domain 17	NM_030886|Ankrd17|81702|ankyrin repeat domain 17	NM_198010|Ankrd17|81702|ankyrin repeat domain 17
mm9_v1_chr10_-_66747843_66748097	0.484101	UCACAGU	AK181810|Nrbf2|641340|nuclear receptor binding factor 2	AK189272|Nrbf2|641340|nuclear receptor binding factor 2	AK205591|Nrbf2|641340|nuclear receptor binding factor 2	AK004200|Nrbf2|641340|nuclear receptor binding factor 2	BC019448|Nrbf2|641340|nuclear receptor binding factor 2	NM_001036293|Nrbf2|641340|nuclear receptor binding factor 2	AK002810|Nrbf2|641340|nuclear receptor binding factor 2
mm9_v1_chr16_-_96349292_96349333	0.479494	UCACAGU	NM_008251|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr12_+_112404645_112404765	0.474432	UCACAGU	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr4_+_33397279_33397404	0.472972	UCACAGU	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr1_+_19202046_19202134	0.471722	UCACAGU	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr12_+_4924157_4924219	0.471666	UCACAGU	AK161170|Atad2b|320817|ATPase family, AAA domain containing 2B	NM_001099628|Atad2b|320817|ATPase family, AAA domain containing 2B	AK080580|Atad2b|320817|ATPase family, AAA domain containing 2B	AK085232|Atad2b|320817|ATPase family, AAA domain containing 2B
mm9_v1_chr10_+_94977721_94977835	0.470874	UCACAGU	AK005302|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK161968|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK005788|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC067069|Ube2n|93765|ubiquitin-conjugating enzyme E2N	NM_080560|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AY039837|Ube2n|93765|ubiquitin-conjugating enzyme E2N	Y09873|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC034898|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC052203|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC132630|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC138211|Ube2n|93765|ubiquitin-conjugating enzyme E2N
mm9_v1_chr6_-_145198693_145198778	0.469416	UCACAGU	BC119495|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC004642|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC010202|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK155064|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK164065|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	NM_021284|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr4_-_44180323_44180519	0.468486	UCACAGU	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr12_-_92828018_92828088	0.468345	UCACAGU	AF250834|Gtf2a1|83602|general transcription factor II A, 1	BC079909|Gtf2a1|83602|general transcription factor II A, 1	AK139996|Gtf2a1|83602|general transcription factor II A, 1	NM_031391|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr2_-_59963796_59963833	0.466189	UCACAGU	NM_001001182|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK147737|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr13_-_97440734_97440890	0.465029	UCACAGU	AK159899|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	BC085083|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	AK048784|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	NM_008255|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr11_+_11586215_11586246	0.460567	UCACAGU	NM_001025597|Ikzf1|22778|IKAROS family zinc finger 1	NM_009578|Ikzf1|22778|IKAROS family zinc finger 1	AK036833|Ikzf1|22778|IKAROS family zinc finger 1	AK040268|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chr9_+_74885522_74885560	0.459154	UCACAGU	BC040206|Arpp19|59046|cAMP-regulated phosphoprotein 19	NM_021548|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr7_-_29164215_29164277	0.45462	UCACAGU	M58565|Zfp36|22695|zinc finger protein 36	BC021391|Zfp36|22695|zinc finger protein 36	M57422|Zfp36|22695|zinc finger protein 36	NM_011756|Zfp36|22695|zinc finger protein 36	AK088525|Zfp36|22695|zinc finger protein 36	AK005006|Zfp36|22695|zinc finger protein 36	AK154825|Zfp36|22695|zinc finger protein 36
mm9_v1_chrX_+_90531783_90531984	0.452765	UCACAGU	AB006103|Arx|11878|aristaless related homeobox	BC052033|Arx|11878|aristaless related homeobox	NM_007492|Arx|11878|aristaless related homeobox
mm9_v1_chr17_+_64950988_64951003	0.451885	UCACAGU	NM_008549|Man2a1|17158|mannosidase 2, alpha 1	X61172|Man2a1|17158|mannosidase 2, alpha 1	BC138371|Man2a1|17158|mannosidase 2, alpha 1	BC138372|Man2a1|17158|mannosidase 2, alpha 1
mm9_v1_chr2_-_79969095_79969127	0.450778	UCACAGU	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr2_-_37278415_37278506	0.447751	UCACAGU	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr3_+_102862151_102862295	0.443661	UCACAGU	X13664|Nras|18176|neuroblastoma ras oncogene	NM_010937|Nras|18176|neuroblastoma ras oncogene	AK011704|Nras|18176|neuroblastoma ras oncogene	AK165960|Nras|18176|neuroblastoma ras oncogene	AK150357|Nras|18176|neuroblastoma ras oncogene	BC058755|Nras|18176|neuroblastoma ras oncogene	BC014704|Nras|18176|neuroblastoma ras oncogene	BC051443|Nras|18176|neuroblastoma ras oncogene
mm9_v1_chr13_+_112476313_112476385	0.44262	UCACAGU	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr15_-_96886327_96886398	0.43722	UCACAGU	AK164292|Slc38a4|69354|solute carrier family 38, member 4	AK167539|Slc38a4|69354|solute carrier family 38, member 4	AK051023|Slc38a4|69354|solute carrier family 38, member 4	NM_027052|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr1_-_154472199_154472354	0.437062	UCACAGU	BC017678|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	NM_016846|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	U14103|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169109|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169180|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK144218|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1
mm9_v1_chr11_+_93747419_93747532	0.433922	UCACAGU	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr9_-_65675327_65675370	0.425608	UCACAGU	BC016271|Zfp609|214812|zinc finger protein 609	NM_172536|Zfp609|214812|zinc finger protein 609
mm9_v1_chr10_+_7400978_7401034	0.423369	UCACAGU	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chrX_+_69208336_69208359	0.422585	UCACAGU	BC060135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	NM_001081135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm9_v1_chr10_-_117283020_117283117	0.421026	UCACAGU	BC052480|Rap1b|215449|RAS related protein 1b	NM_024457|Rap1b|215449|RAS related protein 1b	AK163242|Rap1b|215449|RAS related protein 1b
mm9_v1_chr7_-_30290470_30290595	0.415318	UCACAGU	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chr2_-_120796395_120796492	0.413978	UCACAGU	AF061555|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1	NM_009461|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1
mm9_v1_chr16_+_44139908_44140168	0.410762	UCACAGU	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chrX_+_135448968_135449043	0.409878	UCACAGU	NM_013724|Nrk|27206|Nik related kinase	AK041377|Nrk|27206|Nik related kinase	BC068311|Nrk|27206|Nik related kinase	AB020741|Nrk|27206|Nik related kinase
mm9_v1_chr10_+_111409750_111409849	0.408191	UCACAGU	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr5_+_122608248_122608342	0.408091	UCACAGU	AK147131|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	NM_013636|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	BC021646|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK152422|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK169336|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform
mm9_v1_chr19_-_34953810_34953944	0.40739	UCACAGU	AK017345|Pank1|75735|pantothenate kinase 1	AF347700|Pank1|75735|pantothenate kinase 1	NM_001114339|Pank1|75735|pantothenate kinase 1
mm9_v1_chr18_+_24364442_24364497	0.403302	UCACAGU	AK083391|Galnt1|14423|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	NM_001160404|Galnt1|14423|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm9_v1_chr14_-_46008425_46008617	0.402007	UCACAGU	BC092047|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	BC031116|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK018499|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK050266|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AJ001006|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	NM_019425|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007722|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK167870|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK168074|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007647|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK008566|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK002466|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK028693|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007764|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK011098|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1
mm9_v1_chr16_+_33185137_33185252	0.400151	UCACAGU	BC035278|Osbpl11|106326|oxysterol binding protein-like 11	NM_176840|Osbpl11|106326|oxysterol binding protein-like 11	BC099400|Osbpl11|106326|oxysterol binding protein-like 11
mm9_v1_chr11_+_20531941_20532003	0.396916	UCACAGU	AK146621|Sertad2|58172|SERTA domain containing 2	NM_001038625|Sertad2|58172|SERTA domain containing 2	AK146897|Sertad2|58172|SERTA domain containing 2	AK132846|Sertad2|58172|SERTA domain containing 2	AK142018|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr9_+_100544034_100544056	0.396736	UCACAGU	AK052003|Stag1|20842|stromal antigen 1	BC062954|Stag1|20842|stromal antigen 1	NM_009282|Stag1|20842|stromal antigen 1	AK017978|Stag1|20842|stromal antigen 1
mm9_v1_chr12_+_16817770_16817770	0.395875	UCACAGU	NM_033270|E2f6|50496|E2F transcription factor 6
mm9_v1_chr16_+_77013880_77014313	0.392296	UCACAGU	AK011798|Usp25|30940|ubiquitin specific peptidase 25	AK036456|Usp25|30940|ubiquitin specific peptidase 25	AF170563|Usp25|30940|ubiquitin specific peptidase 25	BC048171|Usp25|30940|ubiquitin specific peptidase 25	BC063059|Usp25|30940|ubiquitin specific peptidase 25	NM_013918|Usp25|30940|ubiquitin specific peptidase 25
mm9_v1_chr11_-_59104252_59104253	0.391816	UCACAGU	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chr11_-_86807216_86807263	0.383467	UCACAGU	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr2_-_39046224_39046253	0.37926	UCACAGU	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chr6_-_83391623_83391671	0.37309	UCACAGU	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr11_-_88579517_88579542	0.372598	UCACAGU	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr11_+_62062462_62062711	0.371895	UCACAGU	AK047002|Adora2b|11541|adenosine A2b receptor	NM_007413|Adora2b|11541|adenosine A2b receptor	AK080759|Adora2b|11541|adenosine A2b receptor	BC116415|Adora2b|11541|adenosine A2b receptor	BC116416|Adora2b|11541|adenosine A2b receptor	U05673|Adora2b|11541|adenosine A2b receptor	AK077289|Adora2b|11541|adenosine A2b receptor
mm9_v1_chr2_-_115890247_115890356	0.370703	UCACAGU	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr8_-_89409079_89409204	0.369289	UCACAGU	AK134934|N4bp1|80750|NEDD4 binding protein 1	AK172981|N4bp1|80750|NEDD4 binding protein 1	AK147522|N4bp1|80750|NEDD4 binding protein 1	NM_030563|N4bp1|80750|NEDD4 binding protein 1
mm9_v1_chr10_-_83996632_83996824	0.369215	UCACAGU	NM_175451|Ckap4|216197|cytoskeleton-associated protein 4	BC138318|Ckap4|216197|cytoskeleton-associated protein 4	BC138320|Ckap4|216197|cytoskeleton-associated protein 4	AK132136|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr11_+_87861165_87861225	0.369002	UCACAGU	AK150535|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_001078167|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_173374|Srsf1|110809|serine/arginine-rich splicing factor 1	AK053674|Srsf1|110809|serine/arginine-rich splicing factor 1	AK018176|Srsf1|110809|serine/arginine-rich splicing factor 1	BC058627|Srsf1|110809|serine/arginine-rich splicing factor 1	AK078715|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169203|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169623|Srsf1|110809|serine/arginine-rich splicing factor 1	AK190745|Srsf1|110809|serine/arginine-rich splicing factor 1
mm9_v1_chr11_-_104411728_104411933	0.365043	UCACAGU	AK039377|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK148278|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC023187|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK161471|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC157955|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172100|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172149|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	NM_145436|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)
mm9_v1_chr12_+_72932064_72932126	0.361293	UCACAGU	BC076585|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_026102|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_172464|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK129185|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK165335|Daam1|208846|dishevelled associated activator of morphogenesis 1	BC038403|Daam1|208846|dishevelled associated activator of morphogenesis 1
mm9_v1_chr5_-_144493077_144493148	0.361291	UCACAGU	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr2_+_75670230_75670233	0.359519	UCACAGU	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr9_+_74885420_74885510	0.358439	UCACAGU	NM_001142655|Arpp19|59046|cAMP-regulated phosphoprotein 19	AK076052|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr5_-_108561512_108561635	0.357716	UCACAGU	AK033463|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014065|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK140979|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK159813|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK170036|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC020076|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC132023|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC138226|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK151650|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK078317|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK042931|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014490|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	NM_028876|Tmed5|73130|transmembrane emp24 protein transport domain containing 5
mm9_v1_chr16_+_20611637_20611755	0.356592	UCACAGU	AK007407|Ece2|107522|endothelin converting enzyme 2	AK007791|Ece2|107522|endothelin converting enzyme 2	BC115541|Ece2|107522|endothelin converting enzyme 2	BC115542|Ece2|107522|endothelin converting enzyme 2	NM_025462|Ece2|107522|endothelin converting enzyme 2	NM_177940|Ece2|107522|endothelin converting enzyme 2	NM_177941|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr17_+_28828286_28828455	0.356535	UCACAGU	BC012235|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168508|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168514|Mapk14|26416|mitogen-activated protein kinase 14	NM_011951|Mapk14|26416|mitogen-activated protein kinase 14	BC085303|Mapk14|26416|mitogen-activated protein kinase 14	AK089059|Mapk14|26416|mitogen-activated protein kinase 14	AK133684|Mapk14|26416|mitogen-activated protein kinase 14	AF128892|Mapk14|26416|mitogen-activated protein kinase 14	BC018227|Mapk14|26416|mitogen-activated protein kinase 14	U10871|Mapk14|26416|mitogen-activated protein kinase 14	D83073|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr12_+_54349663_54349663	0.352868	UCACAGU	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr8_+_71404452_71404464	0.348437	UCACAGU	AK080872|Lpl|16956|lipoprotein lipase	AK150328|Lpl|16956|lipoprotein lipase	AK150488|Lpl|16956|lipoprotein lipase	AK150505|Lpl|16956|lipoprotein lipase	AK150532|Lpl|16956|lipoprotein lipase	AK150577|Lpl|16956|lipoprotein lipase	AK150585|Lpl|16956|lipoprotein lipase	AK150593|Lpl|16956|lipoprotein lipase	AK150691|Lpl|16956|lipoprotein lipase	AK150984|Lpl|16956|lipoprotein lipase	AK150990|Lpl|16956|lipoprotein lipase	AK151006|Lpl|16956|lipoprotein lipase	AK151049|Lpl|16956|lipoprotein lipase	AK151093|Lpl|16956|lipoprotein lipase	AK151099|Lpl|16956|lipoprotein lipase	AK151105|Lpl|16956|lipoprotein lipase	AK151112|Lpl|16956|lipoprotein lipase	AK151216|Lpl|16956|lipoprotein lipase	AK151563|Lpl|16956|lipoprotein lipase	AK151679|Lpl|16956|lipoprotein lipase	AK151698|Lpl|16956|lipoprotein lipase	AK151727|Lpl|16956|lipoprotein lipase	AK151772|Lpl|16956|lipoprotein lipase	AK151866|Lpl|16956|lipoprotein lipase	AK151870|Lpl|16956|lipoprotein lipase	AK151872|Lpl|16956|lipoprotein lipase	AK152014|Lpl|16956|lipoprotein lipase	AK152035|Lpl|16956|lipoprotein lipase	AK152049|Lpl|16956|lipoprotein lipase	AK152079|Lpl|16956|lipoprotein lipase	AK152238|Lpl|16956|lipoprotein lipase	AK152350|Lpl|16956|lipoprotein lipase	AK152657|Lpl|16956|lipoprotein lipase	AK152706|Lpl|16956|lipoprotein lipase	AK152775|Lpl|16956|lipoprotein lipase	AK152869|Lpl|16956|lipoprotein lipase	AK152956|Lpl|16956|lipoprotein lipase	AK153006|Lpl|16956|lipoprotein lipase	AK153148|Lpl|16956|lipoprotein lipase	AK153242|Lpl|16956|lipoprotein lipase	AK153425|Lpl|16956|lipoprotein lipase	AK153428|Lpl|16956|lipoprotein lipase	AK155917|Lpl|16956|lipoprotein lipase	AK159268|Lpl|16956|lipoprotein lipase	NM_008509|Lpl|16956|lipoprotein lipase	AK150355|Lpl|16956|lipoprotein lipase	AK152481|Lpl|16956|lipoprotein lipase	AK170486|Lpl|16956|lipoprotein lipase	AK017272|Lpl|16956|lipoprotein lipase	AK150375|Lpl|16956|lipoprotein lipase	AK150646|Lpl|16956|lipoprotein lipase	AK152251|Lpl|16956|lipoprotein lipase	AK154419|Lpl|16956|lipoprotein lipase	BC003305|Lpl|16956|lipoprotein lipase
mm9_v1_chr14_-_62058627_62058783	0.348367	UCACAGU	AF020772|Kpna3|16648|karyopherin (importin) alpha 3	AK011559|Kpna3|16648|karyopherin (importin) alpha 3	AK049373|Kpna3|16648|karyopherin (importin) alpha 3	BC026885|Kpna3|16648|karyopherin (importin) alpha 3	AK161664|Kpna3|16648|karyopherin (importin) alpha 3	NM_008466|Kpna3|16648|karyopherin (importin) alpha 3
mm9_v1_chrX_+_39421012_39421147	0.340549	UCACAGU	NM_009688|Xiap|11798|X-linked inhibitor of apoptosis
mm9_v1_chr1_-_82287990_82288082	0.339639	UCACAGU	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr4_+_21703416_21703444	0.338679	UCACAGU	AK040660|Usp45|77593|ubiquitin specific petidase 45	AK162825|Usp45|77593|ubiquitin specific petidase 45	NM_152825|Usp45|77593|ubiquitin specific petidase 45	AK088073|Usp45|77593|ubiquitin specific petidase 45	BC027768|Usp45|77593|ubiquitin specific petidase 45
mm9_v1_chr6_-_119988624_119988681	0.336944	UCACAGU	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr5_-_23953594_23953663	0.334352	UCACAGU	AY603379|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AK008109|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	BC019547|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AB030183|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	NM_022418|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1
mm9_v1_chr4_-_123427465_123427587	0.333009	UCACAGU	AK006378|Akirin1|68050|akirin 1	AK078055|Akirin1|68050|akirin 1	AB041594|Akirin1|68050|akirin 1	AK160087|Akirin1|68050|akirin 1	AK168201|Akirin1|68050|akirin 1	AK168214|Akirin1|68050|akirin 1	AK146017|Akirin1|68050|akirin 1	AK168530|Akirin1|68050|akirin 1	AK159632|Akirin1|68050|akirin 1	NM_023423|Akirin1|68050|akirin 1	BC003291|Akirin1|68050|akirin 1
mm9_v1_chr6_-_92431385_92431385	0.329831	UCACAGU	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr4_+_59202363_59202463	0.329729	UCACAGU	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr14_+_61253517_61253607	0.326801	UCACAGU	NM_001033272|Spata13|219140|spermatogenesis associated 13
mm9_v1_chr12_+_82960953_82961016	0.325313	UCACAGU	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chr1_+_162125349_162125420	0.325151	UCACAGU	AK007673|Mrps14|64659|mitochondrial ribosomal protein S14	AK010242|Mrps14|64659|mitochondrial ribosomal protein S14	AK144195|Mrps14|64659|mitochondrial ribosomal protein S14	AK083352|Mrps14|64659|mitochondrial ribosomal protein S14	NM_025474|Mrps14|64659|mitochondrial ribosomal protein S14	BC044057|Mrps14|64659|mitochondrial ribosomal protein S14
mm9_v1_chr1_-_164670534_164670687	0.322161	UCACAGU	AK013732|Prrc2c|226562|proline-rich coiled-coil 2C	AK077748|Prrc2c|226562|proline-rich coiled-coil 2C	BC053406|Prrc2c|226562|proline-rich coiled-coil 2C	BC064009|Prrc2c|226562|proline-rich coiled-coil 2C	BC021412|Prrc2c|226562|proline-rich coiled-coil 2C	BC037745|Prrc2c|226562|proline-rich coiled-coil 2C	BC080672|Prrc2c|226562|proline-rich coiled-coil 2C	AK030766|Prrc2c|226562|proline-rich coiled-coil 2C	AK135245|Prrc2c|226562|proline-rich coiled-coil 2C	BC006723|Prrc2c|226562|proline-rich coiled-coil 2C	AK007762|Prrc2c|226562|proline-rich coiled-coil 2C	AK167018|Prrc2c|226562|proline-rich coiled-coil 2C	AK082487|Prrc2c|226562|proline-rich coiled-coil 2C	AK166509|Prrc2c|226562|proline-rich coiled-coil 2C	NM_001081290|Prrc2c|226562|proline-rich coiled-coil 2C
mm9_v1_chr12_-_74147698_74147707	0.321997	UCACAGU	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr5_-_67819037_67819037	0.318876	UCACAGU	NM_001164806|Bend4|666938|BEN domain containing 4
mm9_v1_chr8_-_80248313_80248382	0.317077	UCACAGU	BC008277|Ednra|13617|endothelin receptor type A	AK017486|Ednra|13617|endothelin receptor type A	NM_010332|Ednra|13617|endothelin receptor type A	AK042211|Ednra|13617|endothelin receptor type A
mm9_v1_chr3_+_30993952_30994057	0.316383	UCACAGU	AK162952|Skil|20482|SKI-like	NM_001039090|Skil|20482|SKI-like	NM_011386|Skil|20482|SKI-like	AK087797|Skil|20482|SKI-like	AK154471|Skil|20482|SKI-like	AK171402|Skil|20482|SKI-like	BC018600|Skil|20482|SKI-like	AK163526|Skil|20482|SKI-like
mm9_v1_chr11_+_79153388_79153393	0.314588	UCACAGU	AK085050|Nf1|18015|neurofibromatosis 1	NM_010897|Nf1|18015|neurofibromatosis 1
mm9_v1_chr12_+_16901671_16901783	0.314355	UCACAGU	NM_009072|Rock2|19878|Rho-associated coiled-coil containing protein kinase 2
mm9_v1_chr16_-_13668230_13668281	0.308006	UCACAGU	AK041044|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK160611|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	BC021899|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK049829|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK045181|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK004572|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	NM_028761|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)
mm9_v1_chr17_+_30141959_30142039	0.306064	UCACAGU	AK082915|Zfand3|21769|zinc finger, AN1-type domain 3	AK148316|Zfand3|21769|zinc finger, AN1-type domain 3	BC083124|Zfand3|21769|zinc finger, AN1-type domain 3	NM_148926|Zfand3|21769|zinc finger, AN1-type domain 3
mm9_v1_chr1_-_57028171_57028177	0.303114	UCACAGU	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr7_-_91032695_91032850	0.298953	UCACAGU	AK162446|Mesdc1|80889|mesoderm development candidate 1	AK084510|Mesdc1|80889|mesoderm development candidate 1	AK089082|Mesdc1|80889|mesoderm development candidate 1	AK036338|Mesdc1|80889|mesoderm development candidate 1	NM_030705|Mesdc1|80889|mesoderm development candidate 1
mm9_v1_chr2_+_57090045_57090088	0.297769	UCACAGU	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr12_-_16596573_16596578	0.297401	UCACAGU	AK030921|Lpin1|14245|lipin 1	NM_001130412|Lpin1|14245|lipin 1	NM_015763|Lpin1|14245|lipin 1	NM_172950|Lpin1|14245|lipin 1
mm9_v1_chr11_-_76660476_76660569	0.297065	UCACAGU	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr17_+_15636851_15636923	0.297049	UCACAGU	AK085037|Tbp|21374|TATA box binding protein	NM_013684|Tbp|21374|TATA box binding protein	BC016476|Tbp|21374|TATA box binding protein	AK089397|Tbp|21374|TATA box binding protein	BC050136|Tbp|21374|TATA box binding protein	U63933|Tbp|21374|TATA box binding protein	BC012685|Tbp|21374|TATA box binding protein
mm9_v1_chr19_+_8738494_8738608	0.292674	UCACAGU	AK138282|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_001112697|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_007698|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	BC094242|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	AJ006521|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS
mm9_v1_chr7_+_129210684_129210770	0.287947	UCACAGU	AK077395|Ubfd1|28018|ubiquitin family domain containing 1	NM_138589|Ubfd1|28018|ubiquitin family domain containing 1	BC011313|Ubfd1|28018|ubiquitin family domain containing 1	AK033428|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr13_+_35833181_35833351	0.28679	UCACAGU	BC062123|Cdyl|12593|chromodomain protein, Y chromosome-like	AK156509|Cdyl|12593|chromodomain protein, Y chromosome-like	NM_001123386|Cdyl|12593|chromodomain protein, Y chromosome-like
mm9_v1_chr5_+_65928483_65928591	0.283286	UCACAGU	AK139564|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	NM_016786|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK048194|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK035371|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK018366|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK160728|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK031055|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK036068|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK162142|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AB011081|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	BC085311|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK166647|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)
mm9_v1_chr14_+_31638767_31638861	0.283145	UCACAGU	AK007740|Tmem110|69179|transmembrane protein 110	NM_028839|Tmem110|69179|transmembrane protein 110	AK009341|Tmem110|69179|transmembrane protein 110	AK076341|Tmem110|69179|transmembrane protein 110	AK149088|Tmem110|69179|transmembrane protein 110	AK155257|Tmem110|69179|transmembrane protein 110
mm9_v1_chr5_+_3543815_3543891	0.282659	UCACAGU	AK008115|Fam133b|68152|family with sequence similarity 133, member B	AK019188|Fam133b|68152|family with sequence similarity 133, member B	NM_001042501|Fam133b|68152|family with sequence similarity 133, member B	AK020011|Fam133b|68152|family with sequence similarity 133, member B	BC147310|Fam133b|68152|family with sequence similarity 133, member B	BC147311|Fam133b|68152|family with sequence similarity 133, member B	BC172033|Fam133b|68152|family with sequence similarity 133, member B	BC027051|Fam133b|68152|family with sequence similarity 133, member B	AK161505|Fam133b|68152|family with sequence similarity 133, member B
mm9_v1_chr1_-_140516239_140516335	0.282014	UCACAGU	BC037697|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK165583|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	BC026541|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK035502|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	NM_021605|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK078639|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK088173|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK149308|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7
mm9_v1_chr15_-_77949709_77949709	0.281235	UCACAGU	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chrX_-_12339096_12339247	0.280854	UCACAGU	AB019028|Med14|26896|mediator complex subunit 14	NM_001048208|Med14|26896|mediator complex subunit 14	NM_012005|Med14|26896|mediator complex subunit 14	BC065072|Med14|26896|mediator complex subunit 14
mm9_v1_chr8_-_125222837_125223008	0.280095	UCACAGU	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr19_+_3767420_3767525	0.279428	UCACAGU	AK083227|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167884|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167885|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167886|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167887|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167888|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_001167889|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	NM_144871|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)	AK087267|Suv420h1|225888|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm9_v1_chr1_+_154246959_154247050	0.278744	UCACAGU	AK085716|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK052838|Glt25d2|269132|glycosyltransferase 25 domain containing 2	NM_177756|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK134084|Glt25d2|269132|glycosyltransferase 25 domain containing 2	BC068118|Glt25d2|269132|glycosyltransferase 25 domain containing 2
mm9_v1_chr17_-_48061577_48061752	0.276605	UCACAGU	BC057110|Foxp4|74123|forkhead box P4	NM_001110824|Foxp4|74123|forkhead box P4	NM_001110825|Foxp4|74123|forkhead box P4	NM_028767|Foxp4|74123|forkhead box P4
mm9_v1_chr2_-_38781939_38781980	0.274622	UCACAGU	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chrX_+_93291377_93291457	0.274258	UCACAGU	AK133819|Msn|17698|moesin	AK145746|Msn|17698|moesin	AK150869|Msn|17698|moesin	AK153210|Msn|17698|moesin	NM_010833|Msn|17698|moesin	AK031171|Msn|17698|moesin	S47577|Msn|17698|moesin	BC047366|Msn|17698|moesin	AK157701|Msn|17698|moesin	AK087001|Msn|17698|moesin	AK088336|Msn|17698|moesin
mm9_v1_chr3_+_137527448_137527565	0.273139	UCACAGU	AK088704|H2afz|51788|H2A histone family, member Z	AK146181|H2afz|51788|H2A histone family, member Z	BC079903|H2afz|51788|H2A histone family, member Z	AK143572|H2afz|51788|H2A histone family, member Z	AK151052|H2afz|51788|H2A histone family, member Z	AK151509|H2afz|51788|H2A histone family, member Z	AK152848|H2afz|51788|H2A histone family, member Z	AK168178|H2afz|51788|H2A histone family, member Z	AK169003|H2afz|51788|H2A histone family, member Z	AY074806|H2afz|51788|H2A histone family, member Z	AK028176|H2afz|51788|H2A histone family, member Z	AK150454|H2afz|51788|H2A histone family, member Z	AK151462|H2afz|51788|H2A histone family, member Z	AK151868|H2afz|51788|H2A histone family, member Z	AK152398|H2afz|51788|H2A histone family, member Z	NM_016750|H2afz|51788|H2A histone family, member Z	U70494|H2afz|51788|H2A histone family, member Z	AK212062|H2afz|51788|H2A histone family, member Z
mm9_v1_chr13_-_55671276_55671335	0.272607	UCACAGU	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr2_-_79969429_79969614	0.268015	UCACAGU	AK050004|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001159582|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK021279|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chrX_-_11737471_11737480	0.265094	UCACAGU	BC027704|2900008C10Rik|72937|RIKEN cDNA 2900008C10 gene	AK129398|Bcor|71458|BCL6 interacting corepressor	NM_001168321|Bcor|71458|BCL6 interacting corepressor
mm9_v1_chr11_-_3309227_3309253	0.260466	UCACAGU	NM_010718|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr16_-_50432421_50432504	0.259786	UCACAGU	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr5_-_138227888_138227970	0.258339	UCACAGU	AK154415|Mepce|231803|methylphosphate capping enzyme	NM_144913|Mepce|231803|methylphosphate capping enzyme
mm9_v1_chr6_-_95668770_95668830	0.256998	UCACAGU	BC080781|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK045176|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK042987|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK156263|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK167136|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172363|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172561|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172633|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	NM_011507|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit
mm9_v1_chr16_+_92058498_92058582	0.255261	UCACAGU	AK165590|Mrps6|121022|mitochondrial ribosomal protein S6	AB049943|Mrps6|121022|mitochondrial ribosomal protein S6	AY061856|Mrps6|121022|mitochondrial ribosomal protein S6	AK144718|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK166374|Mrps6|121022|mitochondrial ribosomal protein S6	AK167304|Mrps6|121022|mitochondrial ribosomal protein S6	NM_017391|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK167316|Mrps6|121022|mitochondrial ribosomal protein S6	BC027271|Mrps6|121022|mitochondrial ribosomal protein S6	NM_080456|Mrps6|121022|mitochondrial ribosomal protein S6
mm9_v1_chr11_-_20149322_20149457	0.25408	UCACAGU	AK205251|Cep68|216543|centrosomal protein 68	AK172975|Cep68|216543|centrosomal protein 68	AK146669|Cep68|216543|centrosomal protein 68	AK145286|Cep68|216543|centrosomal protein 68	AK172304|Cep68|216543|centrosomal protein 68	AK169934|Cep68|216543|centrosomal protein 68	AK031622|Cep68|216543|centrosomal protein 68	BC027174|Cep68|216543|centrosomal protein 68	AK140820|Cep68|216543|centrosomal protein 68	NM_172260|Cep68|216543|centrosomal protein 68	AK162594|Cep68|216543|centrosomal protein 68
mm9_v1_chr11_-_40568710_40568789	0.252459	UCACAGU	AK167486|Ccng1|12450|cyclin G1	AK159429|Ccng1|12450|cyclin G1	AK153392|Ccng1|12450|cyclin G1	AK167052|Ccng1|12450|cyclin G1	AK159831|Ccng1|12450|cyclin G1	L49507|Ccng1|12450|cyclin G1	Z37110|Ccng1|12450|cyclin G1	AK160411|Ccng1|12450|cyclin G1	AK128957|Ccng1|12450|cyclin G1	AK147026|Ccng1|12450|cyclin G1	AK170397|Ccng1|12450|cyclin G1	AK143114|Ccng1|12450|cyclin G1	NM_009831|Ccng1|12450|cyclin G1
mm9_v1_chr15_+_99803210_99803320	0.251969	UCACAGU	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr17_+_84911219_84911272	0.251258	UCACAGU	AK029252|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	NM_177606|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC125583|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC137804|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC021518|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
mm9_v1_chr7_+_123236814_123237015	0.247626	UCACAGU	AK003415|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK170172|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	BC072575|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK168206|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK167571|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK144059|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK169309|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AB025407|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	NM_019772|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK180958|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK182617|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene
mm9_v1_chr11_+_80022524_80022572	0.246285	UCACAGU	AK147801|Rhot1|59040|ras homolog gene family, member T1	AK167502|Rhot1|59040|ras homolog gene family, member T1	NM_001163354|Rhot1|59040|ras homolog gene family, member T1	NM_001163355|Rhot1|59040|ras homolog gene family, member T1	NM_021536|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr8_+_81033220_81033473	0.246101	UCACAGU	NM_029736|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK160402|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK079901|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152752|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152849|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK010834|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK165983|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK040517|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116666|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116717|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825926|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825927|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825928|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm9_v1_chrX_+_33868347_33868594	0.242251	UCACAGU	AK167341|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK016522|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK147751|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	NM_028894|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120688|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120690|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK030866|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3
mm9_v1_chr11_+_53164267_53164268	0.239584	UCACAGU	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr16_-_44016471_44016548	0.23813	UCACAGU	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr6_+_7795223_7795332	0.235455	UCACAGU	NM_052993|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	AF157962|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	BC064767|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm9_v1_chr2_-_33286793_33286890	0.23534	UCACAGU	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr10_-_78054639_78054708	0.233312	UCACAGU	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr10_+_83006673_83006768	0.231351	UCACAGU	NM_001033375|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK145000|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK166233|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK043911|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK038582|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene
mm9_v1_chr7_+_19705202_19705237	0.230026	UCACAGU	NM_175530|Fbxo46|243867|F-box protein 46	AK030147|Fbxo46|243867|F-box protein 46	BC049813|Fbxo46|243867|F-box protein 46
mm9_v1_chr2_-_154718506_154718641	0.227496	UCACAGU	BC113766|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC003848|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK019156|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK143553|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166862|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145401|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK012338|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC100539|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK076056|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK011503|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK042004|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166866|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145434|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	NM_026030|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm9_v1_chrX_-_103124651_103124717	0.227255	UCACAGU	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr1_-_168339909_168339980	0.226527	UCACAGU	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr1_+_59538966_59539075	0.226478	UCACAGU	NM_008057|Fzd7|14369|frizzled homolog 7 (Drosophila)	BC063077|Fzd7|14369|frizzled homolog 7 (Drosophila)
mm9_v1_chr7_+_104480819_104480860	0.226076	UCACAGU	NM_001039039|Kctd21|622320|potassium channel tetramerisation domain containing 21	AK141547|Kctd21|622320|potassium channel tetramerisation domain containing 21
mm9_v1_chr17_+_4995073_4995073	0.221764	UCACAGU	NM_001085355|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr5_-_20457608_20457646	0.220229	UCACAGU	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chr19_+_46697882_46697901	0.219211	UCACAGU	AK078491|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK142695|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	NM_001177813|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK052400|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed
mm9_v1_chr1_-_16609325_16609423	0.215397	UCACAGU	AK077997|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	BC020124|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK082233|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	NM_025773|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK042870|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK044463|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050679|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK015348|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK046086|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050923|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)
mm9_v1_chrX_-_98417753_98417901	0.214766	UCACAGU	AK168604|Snx12|55988|sorting nexin 12	AK011257|Snx12|55988|sorting nexin 12	AK170403|Snx12|55988|sorting nexin 12	AK049561|Snx12|55988|sorting nexin 12	AK146833|Snx12|55988|sorting nexin 12	AF062484|Snx12|55988|sorting nexin 12	BC002009|Snx12|55988|sorting nexin 12	AK148235|Snx12|55988|sorting nexin 12	AK169569|Snx12|55988|sorting nexin 12	AK170992|Snx12|55988|sorting nexin 12	AK131838|Snx12|55988|sorting nexin 12	NM_001110310|Snx12|55988|sorting nexin 12	NM_001110311|Snx12|55988|sorting nexin 12	NM_018875|Snx12|55988|sorting nexin 12
mm9_v1_chr13_-_115178227_115178301	0.21462	UCACAGU	AF124785|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020552|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	BC004618|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK011124|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020108|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	NM_010887|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr5_+_97426665_97426877	0.208146	UCACAGU	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr2_-_65962685_65962849	0.202734	UCACAGU	U70538|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC043331|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC003765|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK007135|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK135489|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK019995|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	NM_015736|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
mm9_v1_chr10_+_17775737_17775881	0.201683	UCACAGU	NM_001111065|Reps1|19707|RalBP1 associated Eps domain containing protein	NM_009048|Reps1|19707|RalBP1 associated Eps domain containing protein	BC087547|Reps1|19707|RalBP1 associated Eps domain containing protein	AK150284|Reps1|19707|RalBP1 associated Eps domain containing protein	AK151309|Reps1|19707|RalBP1 associated Eps domain containing protein
mm9_v1_chr6_+_88034462_88034491	0.201406	UCACAGU	NM_133933|Rpn1|103963|ribophorin I
mm9_v1_chr15_+_99501148_99501237	0.198425	UCACAGU	BC067025|Accn2|11419|amiloride-sensitive cation channel 2, neuronal	NM_009597|Accn2|11419|amiloride-sensitive cation channel 2, neuronal
mm9_v1_chr8_-_72519966_72520302	0.198001	UCACAGU	AK160058|Gatad2a|234366|GATA zinc finger domain containing 2A	AK089074|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_001113345|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_145596|Gatad2a|234366|GATA zinc finger domain containing 2A	AK083473|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr5_-_135164426_135164540	0.19772	UCACAGU	BC063768|Limk1|16885|LIM-domain containing, protein kinase	AK141813|Limk1|16885|LIM-domain containing, protein kinase	AK164484|Limk1|16885|LIM-domain containing, protein kinase	U15159|Limk1|16885|LIM-domain containing, protein kinase	NM_010717|Limk1|16885|LIM-domain containing, protein kinase	U14166|Limk1|16885|LIM-domain containing, protein kinase
mm9_v1_chr8_-_8660610_8660772	0.195887	UCACAGU	U30244|Efnb2|13642|ephrin B2	CT010381|Efnb2|13642|ephrin B2	U16819|Efnb2|13642|ephrin B2	L38847|Efnb2|13642|ephrin B2	NM_010111|Efnb2|13642|ephrin B2
mm9_v1_chrX_+_82819294_82819360	0.193577	UCACAGU	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr10_-_14264800_14264841	0.193576	UCACAGU	AB183545|Gpr126|215798|G protein-coupled receptor 126	NM_001002268|Gpr126|215798|G protein-coupled receptor 126
mm9_v1_chr3_-_107563372_107563394	0.193192	UCACAGU	AK154261|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113529|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113530|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_007778|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chrX_-_57657081_57657155	0.192748	UCACAGU	AK143860|Atp11c|320940|ATPase, class VI, type 11C	BC106087|Atp11c|320940|ATPase, class VI, type 11C	AK079479|Atp11c|320940|ATPase, class VI, type 11C	AK043065|Atp11c|320940|ATPase, class VI, type 11C	AK039243|Atp11c|320940|ATPase, class VI, type 11C	NM_001001798|Atp11c|320940|ATPase, class VI, type 11C	NM_001037863|Atp11c|320940|ATPase, class VI, type 11C
mm9_v1_chr14_-_76510534_76510637	0.189658	UCACAGU	AK173238|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	BC029731|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK004707|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK082912|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	NM_026177|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK016681|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene
mm9_v1_chrX_-_149204003_149204188	0.187169	UCACAGU	DQ358971|Shroom2|110380|shroom family member 2	NM_172441|Shroom2|110380|shroom family member 2	EF071946|Shroom2|110380|shroom family member 2
mm9_v1_chrX_-_108810630_108810687	0.185518	UCACAGU	BC116300|Hdx|245596|highly divergent homeobox	BC116301|Hdx|245596|highly divergent homeobox	AK083436|Hdx|245596|highly divergent homeobox	NM_001080549|Hdx|245596|highly divergent homeobox
mm9_v1_chr13_-_100874021_100874024	0.185319	UCACAGU	AK045292|Bdp1|544971|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	NM_001081061|Bdp1|544971|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
mm9_v1_chr4_+_108000728_108000805	0.182573	UCACAGU	AK081388|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK044999|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	NM_027250|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK008518|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168902|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168344|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	BC012391|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene
mm9_v1_chr9_-_36954858_36954932	0.182123	UCACAGU	NM_148950|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr16_+_52031661_52031695	0.172966	UCACAGU	NM_001033238|Cblb|208650|Casitas B-lineage lymphoma b	AK147367|Cblb|208650|Casitas B-lineage lymphoma b
mm9_v1_chr1_+_134373910_134373945	0.170798	UCACAGU	AK171177|Rbbp5|213464|retinoblastoma binding protein 5	AK154782|Rbbp5|213464|retinoblastoma binding protein 5	NM_172517|Rbbp5|213464|retinoblastoma binding protein 5	AK170520|Rbbp5|213464|retinoblastoma binding protein 5
mm9_v1_chr6_+_97879810_97879849	0.170633	UCACAGU	NM_001178049|Mitf|17342|microphthalmia-associated transcription factor	AK052895|Mitf|17342|microphthalmia-associated transcription factor	U19874|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr17_+_73267643_73267665	0.167348	UCACAGU	AK020110|Lbh|77889|limb-bud and heart	NM_029999|Lbh|77889|limb-bud and heart	AF317517|Lbh|77889|limb-bud and heart	BC026827|Lbh|77889|limb-bud and heart	BC052470|Lbh|77889|limb-bud and heart
mm9_v1_chr2_+_38367184_38367395	0.165398	UCACAGU	AK029266|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AF218847|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	NM_021606|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK086700|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK011519|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK075836|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK018168|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK004925|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK075717|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK089919|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	BC019524|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK170757|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	NM_001159631|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6
mm9_v1_chr11_+_20443168_20443285	0.16483	UCACAGU	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr13_-_8870231_8870293	0.162839	UCACAGU	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr6_+_142335733_142335814	0.16105	UCACAGU	AK009991|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)	AK018531|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)	NM_025872|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)	BC085246|Golt1b|66964|golgi transport 1 homolog B (S. cerevisiae)
mm9_v1_chr2_-_75542552_75542719	0.157713	UCACAGU	BC003340|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK144247|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK029360|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK142347|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	BC026943|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	NM_010902|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	U20532|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr15_-_78548542_78548542	0.157065	UCACAGU	BC094219|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2	NM_183141|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2
mm9_v1_chr2_+_173563060_173563229	0.154653	UCACAGU	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr14_+_65977510_65977519	0.154035	UCACAGU	AK155538|Zfp395|380912|zinc finger protein 395	NM_199029|Zfp395|380912|zinc finger protein 395
mm9_v1_chr15_-_11925724_11925789	0.15035	UCACAGU	J03750|Sub1|20024|SUB1 homolog (S. cerevisiae)	BC010967|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK146335|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK154114|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK049260|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK132021|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK151734|Sub1|20024|SUB1 homolog (S. cerevisiae)	AK048371|Sub1|20024|SUB1 homolog (S. cerevisiae)	NM_011294|Sub1|20024|SUB1 homolog (S. cerevisiae)
mm9_v1_chrX_+_12648604_12648673	0.142771	UCACAGU	AK049283|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	NM_009481|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	AK028443|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	DQ086491|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	U67874|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome
mm9_v1_chr10_+_126415772_126415772	0.141583	UCACAGU	BC085142|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	NM_001113470|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm9_v1_chr7_-_133935952_133936049	0.140894	UCACAGU	BC001993|Ppp4c|56420|protein phosphatase 4, catalytic subunit	NM_019674|Ppp4c|56420|protein phosphatase 4, catalytic subunit	AF088911|Ppp4c|56420|protein phosphatase 4, catalytic subunit	BC013806|Ppp4c|56420|protein phosphatase 4, catalytic subunit
mm9_v1_chr18_+_61123204_61123218	0.139011	UCACAGU	NM_009792|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X87142|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr17_+_14416508_14416565	0.132882	UCACAGU	NM_022315|Smoc2|64074|SPARC related modular calcium binding 2	AJ249901|Smoc2|64074|SPARC related modular calcium binding 2	AK030958|Smoc2|64074|SPARC related modular calcium binding 2	AK159749|Smoc2|64074|SPARC related modular calcium binding 2	AK160002|Smoc2|64074|SPARC related modular calcium binding 2	AK172312|Smoc2|64074|SPARC related modular calcium binding 2	AK040109|Smoc2|64074|SPARC related modular calcium binding 2	BC019527|Smoc2|64074|SPARC related modular calcium binding 2
mm9_v1_chr10_+_10869224_10869321	0.131998	UCACAGU	AK082160|Shprh|268281|SNF2 histone linker PHD RING helicase	AK053448|Shprh|268281|SNF2 histone linker PHD RING helicase	NM_001077707|Shprh|268281|SNF2 histone linker PHD RING helicase	NM_172937|Shprh|268281|SNF2 histone linker PHD RING helicase	BC055003|Shprh|268281|SNF2 histone linker PHD RING helicase	AK048265|Shprh|268281|SNF2 histone linker PHD RING helicase	AK085285|Shprh|268281|SNF2 histone linker PHD RING helicase	AK011809|Shprh|268281|SNF2 histone linker PHD RING helicase	AY162264|Shprh|268281|SNF2 histone linker PHD RING helicase	AY162266|Shprh|268281|SNF2 histone linker PHD RING helicase
mm9_v1_chr7_-_117758413_117758468	0.130562	UCACAGU	BC048706|Sbf2|319934|SET binding factor 2	AK080963|Sbf2|319934|SET binding factor 2	AK087396|Sbf2|319934|SET binding factor 2	AK080952|Sbf2|319934|SET binding factor 2	NM_177324|Sbf2|319934|SET binding factor 2	AK046622|Sbf2|319934|SET binding factor 2
mm9_v1_chr2_+_84877325_84877397	0.129664	UCACAGU	AK151584|Ssrp1|20833|structure specific recognition protein 1	AK147005|Ssrp1|20833|structure specific recognition protein 1	AK146446|Ssrp1|20833|structure specific recognition protein 1	AK146585|Ssrp1|20833|structure specific recognition protein 1	NM_182990|Ssrp1|20833|structure specific recognition protein 1	AK146607|Ssrp1|20833|structure specific recognition protein 1	AK146691|Ssrp1|20833|structure specific recognition protein 1	S68099|Ssrp1|20833|structure specific recognition protein 1
mm9_v1_chr3_-_104024291_104024328	0.129243	UCACAGU	AK018328|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_001159354|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_133853|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm9_v1_chr2_+_69561103_69561149	0.129238	UCACAGU	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr11_-_120852609_120852649	0.129074	UCACAGU	BC004604|Csnk1d|104318|casein kinase 1, delta	AK146600|Csnk1d|104318|casein kinase 1, delta	AK051052|Csnk1d|104318|casein kinase 1, delta	NM_027874|Csnk1d|104318|casein kinase 1, delta	NM_139059|Csnk1d|104318|casein kinase 1, delta
mm9_v1_chr1_+_70772288_70772496	0.128984	UCACAGU	BC094541|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	NM_177164|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK083856|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	BC064448|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK080585|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like
mm9_v1_chr3_+_95462640_95462703	0.128836	UCACAGU	NM_008562|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr9_-_73781373_73781373	0.125597	UCACAGU	NM_001081153|Unc13c|208898|unc-13 homolog C (C. elegans)
mm9_v1_chr18_+_83084023_83084023	0.125215	UCACAGU	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr4_+_109079704_109079727	0.122794	UCACAGU	AK048659|Ttc39a|230603|tetratricopeptide repeat domain 39A	NM_153392|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK082733|Ttc39a|230603|tetratricopeptide repeat domain 39A	BC023883|Ttc39a|230603|tetratricopeptide repeat domain 39A
mm9_v1_chr4_+_13678443_13678575	0.12241	UCACAGU	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr12_+_96930429_96930467	0.120282	UCACAGU	AK135149|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	NM_201518|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK136973|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC067058|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK041311|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC096471|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr12_-_60320438_60320474	0.120223	UCACAGU	BC020022|Fbxo33|70611|F-box protein 33	NM_001033156|Fbxo33|70611|F-box protein 33
mm9_v1_chrX_-_100381973_100382006	0.119677	UCACAGU	X92352|Nap1l2|17954|nucleosome assembly protein 1-like 2	NM_008671|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr14_-_124591742_124591767	0.119168	UCACAGU	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr11_-_5662259_5662400	0.119044	UCACAGU	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr11_-_100981015_100981199	0.118592	UCACAGU	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr18_-_80909796_80909814	0.116117	UCACAGU	BC061509|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK048610|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK144965|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164109|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164110|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_198429|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
mm9_v1_chr16_+_7069927_7069947	0.115855	UCACAGU	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr2_-_32306938_32306989	0.114926	UCACAGU	BC037109|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK132204|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK082756|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK049392|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164357|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_146118|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr2_+_57090707_57090899	0.114001	UCACAGU	BC021359|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_010274|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK167152|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	U60987|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK034353|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK151189|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	D50430|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr6_+_141197789_141197831	0.109051	UCACAGU	AF099187|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	NM_018779|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	BC138265|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	BC138266|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited
mm9_v1_chr16_-_31201251_31201348	0.108978	UCACAGU	AK032916|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK129041|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK044812|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK020591|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	NM_030138|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chr7_-_52689833_52689978	0.107445	UCACAGU	AK159112|Ruvbl2|20174|RuvB-like protein 2	NM_011304|Ruvbl2|20174|RuvB-like protein 2
mm9_v1_chr8_+_112302530_112302620	0.102428	UCACAGU	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr12_-_111934580_111934653	0.102077	UCACAGU	BC049124|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1	AK004658|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1	NM_010480|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1
mm9_v1_chr17_-_46817800_46817900	0.0998161	UCACAGU	BC018154|Klhdc3|71765|kelch domain containing 3	AK004964|Klhdc3|71765|kelch domain containing 3	AK141673|Klhdc3|71765|kelch domain containing 3	NM_001163729|Klhdc3|71765|kelch domain containing 3	NM_027910|Klhdc3|71765|kelch domain containing 3
mm9_v1_chr2_-_58210162_58210168	0.0991881	UCACAGU	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr19_-_55173908_55173946	0.0989444	UCACAGU	BC019201|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	NM_008149|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr10_-_7675872_7675977	0.0966518	UCACAGU	AK089164|Tab2|68652|TGF-beta activated kinase 1/MAP3K7 binding protein 2	NM_138667|Tab2|68652|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm9_v1_chr11_-_86358252_86358308	0.0941797	UCACAGU	BC038491|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	BC071244|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK032724|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK085687|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK135716|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK163258|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_001114334|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_028259|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr2_+_173902521_173902654	0.0941555	UCACAGU	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr10_+_51953390_51953445	0.0924485	UCACAGU	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr16_-_4789869_4789937	0.091972	UCACAGU	AK017480|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK005157|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	BC004063|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK149939|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK150219|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK051560|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK031705|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	NM_025670|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr11_-_113545329_113545497	0.0918628	UCACAGU	AK009763|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159228|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK017659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK087540|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK028386|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	NM_138598|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed
mm9_v1_chr6_-_120443824_120443824	0.0918282	UCACAGU	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr9_+_32031833_32031859	0.0907831	UCACAGU	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr8_+_123012667_123012765	0.0903242	UCACAGU	BC043094|Gse1|382034|genetic suppressor element 1	NM_198671|Gse1|382034|genetic suppressor element 1
mm9_v1_chr16_-_92697567_92697590	0.0902857	UCACAGU	AK155262|Runx1|12394|runt related transcription factor 1	D26532|Runx1|12394|runt related transcription factor 1	NM_001111023|Runx1|12394|runt related transcription factor 1	NM_009821|Runx1|12394|runt related transcription factor 1
mm9_v1_chr5_+_89149887_89150001	0.0902109	UCACAGU	AK045695|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK162120|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	NM_026735|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK150016|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK077320|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK172291|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104402|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104403|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK003346|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)
mm9_v1_chr19_-_24355054_24355107	0.0901793	UCACAGU	BC058533|Fxn|14297|frataxin	BC125337|Fxn|14297|frataxin	BC132337|Fxn|14297|frataxin	NM_008044|Fxn|14297|frataxin	U95736|Fxn|14297|frataxin	AK160458|Fxn|14297|frataxin	AK148147|Fxn|14297|frataxin
mm9_v1_chr9_-_44689356_44689381	0.0898831	UCACAGU	NM_001081049|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1
mm9_v1_chr9_+_65756816_65756864	0.087746	UCACAGU	AK090262|Csnk1g1|214897|casein kinase 1, gamma 1	NM_173185|Csnk1g1|214897|casein kinase 1, gamma 1	AK050473|Csnk1g1|214897|casein kinase 1, gamma 1	AK149310|Csnk1g1|214897|casein kinase 1, gamma 1
mm9_v1_chr8_-_114378162_114378252	0.0864948	UCACAGU	AK160532|Cfdp1|23837|craniofacial development protein 1	BC005589|Cfdp1|23837|craniofacial development protein 1	AB010828|Cfdp1|23837|craniofacial development protein 1	NM_011801|Cfdp1|23837|craniofacial development protein 1	Y08219|Cfdp1|23837|craniofacial development protein 1	AK133989|Cfdp1|23837|craniofacial development protein 1
mm9_v1_chr7_-_36539369_36539472	0.086051	UCACAGU	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr10_+_61595837_61595922	0.0857673	UCACAGU	AK008017|Neurog3|11925|neurogenin 3	NM_009719|Neurog3|11925|neurogenin 3	BC104326|Neurog3|11925|neurogenin 3	BC104327|Neurog3|11925|neurogenin 3
mm9_v1_chr7_-_87679873_87680004	0.0850421	UCACAGU	AB008674|Blm|12144|Bloom syndrome, RecQ helicase-like	NM_007550|Blm|12144|Bloom syndrome, RecQ helicase-like	AK164605|Blm|12144|Bloom syndrome, RecQ helicase-like	Z98263|Blm|12144|Bloom syndrome, RecQ helicase-like	AK137022|Blm|12144|Bloom syndrome, RecQ helicase-like	AK157898|Blm|12144|Bloom syndrome, RecQ helicase-like	NM_001042527|Blm|12144|Bloom syndrome, RecQ helicase-like
mm9_v1_chr14_-_67627598_67627723	0.084255	UCACAGU	AK220143|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC049081|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK139950|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK004667|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC085237|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK018668|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK155040|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AY057069|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK013467|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK007920|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AF067395|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK168482|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK169391|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	NM_009761|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like
mm9_v1_chr9_-_97933533_97933585	0.0835435	UCACAGU	AJ278069|Clstn2|64085|calsyntenin 2	BC063058|Clstn2|64085|calsyntenin 2	NM_022319|Clstn2|64085|calsyntenin 2
mm9_v1_chr2_+_84877598_84877631	0.0830495	UCACAGU	AK158552|Ssrp1|20833|structure specific recognition protein 1	NM_001136081|Ssrp1|20833|structure specific recognition protein 1	BC004848|Ssrp1|20833|structure specific recognition protein 1
mm9_v1_chr15_+_32850477_32850629	0.082346	UCACAGU	NM_008304|Sdc2|15529|syndecan 2	U00674|Sdc2|15529|syndecan 2	BC047144|Sdc2|15529|syndecan 2	AK011042|Sdc2|15529|syndecan 2
mm9_v1_chr11_+_23156022_23156046	0.0823235	UCACAGU	BC062912|Xpo1|103573|exportin 1, CRM1 homolog (yeast)	NM_001035226|Xpo1|103573|exportin 1, CRM1 homolog (yeast)	NM_134014|Xpo1|103573|exportin 1, CRM1 homolog (yeast)
mm9_v1_chr10_+_87323855_87324094	0.0815546	UCACAGU	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr7_-_77511607_77511666	0.080934	UCACAGU	BC094360|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	NM_183261|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr12_-_27100112_27100136	0.0792183	UCACAGU	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr3_-_104855832_104856063	0.0785916	UCACAGU	BC003236|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK145085|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK051259|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK030438|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK129359|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163332|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163333|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK029901|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_030249|Cttnbp2nl|80281|CTTNBP2 N-terminal like
mm9_v1_chr16_-_38550174_38550326	0.078406	UCACAGU	AK197458|Poglut1|224143|protein O-glucosyltransferase 1	AK215456|Poglut1|224143|protein O-glucosyltransferase 1	AK216766|Poglut1|224143|protein O-glucosyltransferase 1	AK036224|Poglut1|224143|protein O-glucosyltransferase 1	NM_172380|Poglut1|224143|protein O-glucosyltransferase 1	AK031608|Poglut1|224143|protein O-glucosyltransferase 1	AK041321|Poglut1|224143|protein O-glucosyltransferase 1	AK045278|Poglut1|224143|protein O-glucosyltransferase 1	AK035948|Poglut1|224143|protein O-glucosyltransferase 1	BC026809|Poglut1|224143|protein O-glucosyltransferase 1	AK082556|Poglut1|224143|protein O-glucosyltransferase 1	AK167641|Poglut1|224143|protein O-glucosyltransferase 1	AK079886|Poglut1|224143|protein O-glucosyltransferase 1
mm9_v1_chr11_-_68200284_68200327	0.0780842	UCACAGU	NM_008744|Ntn1|18208|netrin 1
mm9_v1_chr5_-_22056086_22056211	0.0778482	UCACAGU	AK166537|Orc5|26429|origin recognition complex, subunit 5	AK169683|Orc5|26429|origin recognition complex, subunit 5	AJ007360|Orc5|26429|origin recognition complex, subunit 5	AK144983|Orc5|26429|origin recognition complex, subunit 5	NM_011959|Orc5|26429|origin recognition complex, subunit 5	AK165912|Orc5|26429|origin recognition complex, subunit 5	BC006927|Orc5|26429|origin recognition complex, subunit 5	AK084683|Orc5|26429|origin recognition complex, subunit 5
mm9_v1_chr3_-_148617598_148617598	0.0771852	UCACAGU	NM_001081298|Lphn2|99633|latrophilin 2
mm9_v1_chr7_+_119902897_119902956	0.0762362	UCACAGU	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chr17_+_25359526_25359671	0.0740401	UCACAGU	AK004898|Unkl|74154|unkempt-like (Drosophila)	NM_028789|Unkl|74154|unkempt-like (Drosophila)	BC150842|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr10_+_69388242_69388279	0.0737877	UCACAGU	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr9_+_58671214_58671318	0.0736207	UCACAGU	BC158106|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4	BC158108|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4	NM_001081192|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4
mm9_v1_chr6_+_114232618_114232629	0.0718133	UCACAGU	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr2_-_85036855_85036855	0.0716582	UCACAGU	AK134968|Lrrc55|241528|leucine rich repeat containing 55	BC141221|Lrrc55|241528|leucine rich repeat containing 55	NM_001033346|Lrrc55|241528|leucine rich repeat containing 55
mm9_v1_chr3_+_58810899_58810899	0.0706666	UCACAGU	AK047743|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like	NM_177855|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm9_v1_chr8_+_4238718_4238771	0.070659	UCACAGU	NM_001042557|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_001164172|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_011944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022112|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022113|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr2_-_52601140_52601264	0.0688832	UCACAGU	AK214650|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK004604|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	NM_019667|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AB012611|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK044230|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK159699|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK017668|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK078244|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK168729|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	BC013818|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	DQ141211|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK035789|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm9_v1_chr7_+_121558695_121558794	0.0667337	UCACAGU	NM_011055|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited	AF547435|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited
mm9_v1_chr12_+_109417947_109418052	0.0646832	UCACAGU	NM_009832|Ccnk|12454|cyclin K	AK089386|Ccnk|12454|cyclin K	AK146711|Ccnk|12454|cyclin K	AK154765|Ccnk|12454|cyclin K	AK154679|Ccnk|12454|cyclin K	BC027297|Ccnk|12454|cyclin K
mm9_v1_chr11_+_60591019_60591051	0.0633993	UCACAGU	NM_001085440|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	NM_175491|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK052754|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK164045|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK145010|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK083739|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
mm9_v1_chr17_+_23940151_23940238	0.0582284	UCACAGU	AK171001|Srrm2|75956|serine/arginine repetitive matrix 2	NM_175229|Srrm2|75956|serine/arginine repetitive matrix 2	BC019803|Srrm2|75956|serine/arginine repetitive matrix 2	AK090123|Srrm2|75956|serine/arginine repetitive matrix 2	BC092355|Srrm2|75956|serine/arginine repetitive matrix 2	BC037186|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr9_-_114473486_114473486	0.0537303	UCACAGU	DQ005956|Trim71|636931|tripartite motif-containing 71	NM_001042503|Trim71|636931|tripartite motif-containing 71
mm9_v1_chr11_+_45869473_45869501	0.0520939	UCACAGU	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr6_+_97757012_97757093	0.0515876	UCACAGU	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr3_+_62142698_62142868	0.0507535	UCACAGU	NM_001081295|Arhgef26|622434|Rho guanine nucleotide exchange factor (GEF) 26
mm9_v1_chr16_-_34514112_34514198	0.0496167	UCACAGU	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr17_+_15080188_15080199	0.0493411	UCACAGU	AK028052|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083880|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083881|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083882|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_026451|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr14_+_48092235_48092236	0.0476332	UCACAGU	AK020018|Fbxo34|78938|F-box protein 34	NM_001146085|Fbxo34|78938|F-box protein 34	NM_001146086|Fbxo34|78938|F-box protein 34	NM_030236|Fbxo34|78938|F-box protein 34
mm9_v1_chr9_-_99469275_99469317	0.0462202	UCACAGU	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr5_+_143105467_143105567	0.046064	UCACAGU	AK010881|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK043857|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK155113|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	BC044894|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	NM_178398|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK169051|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK172030|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2
mm9_v1_chr4_+_32744074_32744093	0.0447781	UCACAGU	AK144722|Mdn1|100019|midasin homolog (yeast)	NM_001081392|Mdn1|100019|midasin homolog (yeast)
mm9_v1_chrX_+_45976650_45976756	0.0440768	UCACAGU	AF076981|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF535150|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF535151|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	NM_011398|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr7_-_13404178_13404219	0.0428185	UCACAGU	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr17_+_72119030_72119041	0.0427924	UCACAGU	AK029962|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	NM_175378|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK018895|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK075758|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK161301|Clip4|78785|CAP-GLY domain containing linker protein family, member 4
mm9_v1_chr7_+_107376116_107376219	0.0420598	UCACAGU	NM_027629|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK039189|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK040513|Pgm2l1|70974|phosphoglucomutase 2-like 1	BC076571|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr7_+_96552871_96552906	0.0409252	UCACAGU	BC015256|Fzd4|14366|frizzled homolog 4 (Drosophila)	NM_008055|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK044794|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK132577|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK050891|Fzd4|14366|frizzled homolog 4 (Drosophila)
mm9_v1_chr1_+_62749850_62750115	0.0393539	UCACAGU	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr2_-_31939210_31939226	0.0388181	UCACAGU	AK079514|Fam78a|241303|family with sequence similarity 78, member A	NM_175511|Fam78a|241303|family with sequence similarity 78, member A	AK077626|Fam78a|241303|family with sequence similarity 78, member A
mm9_v1_chr17_+_28829512_28829512	0.038357	UCACAGU	AK151348|Mapk14|26416|mitogen-activated protein kinase 14	AK153025|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168513|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr17_-_24278482_24278583	0.036295	UCACAGU	AK165564|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF126294|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK149162|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	BC146001|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	BC146003|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF079535|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK149289|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF086625|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK162677|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK143283|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK147835|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK147149|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	NM_001080773|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	NM_011062|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1
mm9_v1_chr4_-_129301106_129301154	0.0354304	UCACAGU	AK003287|Ccdc28b|66264|coiled coil domain containing 28B	AK028262|Ccdc28b|66264|coiled coil domain containing 28B	BC028873|Ccdc28b|66264|coiled coil domain containing 28B	NM_025455|Ccdc28b|66264|coiled coil domain containing 28B	AK158016|Ccdc28b|66264|coiled coil domain containing 28B
mm9_v1_chr17_-_43013320_43013409	0.0349646	UCACAGU	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr6_+_86992796_86992906	0.0340902	UCACAGU	AK087173|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	NM_013528|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK019852|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK039792|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC050762|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AF334736|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC010516|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr11_+_98671106_98671158	0.0337462	UCACAGU	NM_138660|Casc3|192160|cancer susceptibility candidate 3	AF526276|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr5_-_98459943_98460087	0.0331539	UCACAGU	BC076595|Antxr2|71914|anthrax toxin receptor 2	NM_133738|Antxr2|71914|anthrax toxin receptor 2	AK155460|Antxr2|71914|anthrax toxin receptor 2
mm9_v1_chr3_+_52072251_52072295	0.0323363	UCACAGU	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr6_-_72908741_72908741	0.0323144	UCACAGU	NM_001190327|Tmsb10|19240|thymosin, beta 10
mm9_v1_chr11_-_97011025_97011025	0.0321423	UCACAGU	BC057590|Tbkbp1|73174|TBK1 binding protein 1	NM_198100|Tbkbp1|73174|TBK1 binding protein 1
mm9_v1_chr9_-_65732843_65732979	0.0320672	UCACAGU	AK078393|Trip4|56404|thyroid hormone receptor interactor 4	AK150752|Trip4|56404|thyroid hormone receptor interactor 4	BC021316|Trip4|56404|thyroid hormone receptor interactor 4	AK039024|Trip4|56404|thyroid hormone receptor interactor 4	AK146298|Trip4|56404|thyroid hormone receptor interactor 4	NM_001170907|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr18_+_31919533_31919621	0.0319725	UCACAGU	BC056948|Ammecr1l|225339|AMME chromosomal region gene 1-like	NM_153515|Ammecr1l|225339|AMME chromosomal region gene 1-like	AK151257|Ammecr1l|225339|AMME chromosomal region gene 1-like
mm9_v1_chr6_-_142912908_142912971	0.0311954	UCACAGU	AK046188|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	BC024821|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	NM_011374|St8sia1|20449|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm9_v1_chr14_+_31292750_31292775	0.0293643	UCACAGU	AJ344447|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	NM_133761|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr8_+_109817355_109817761	0.0285906	UCACAGU	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr13_-_102462584_102462601	0.0271682	UCACAGU	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr5_-_108416027_108416163	0.0261163	UCACAGU	BC055842|Fam69a|67266|family with sequence similarity 69, member A	BC095935|Fam69a|67266|family with sequence similarity 69, member A	AK008504|Fam69a|67266|family with sequence similarity 69, member A	BC116683|Fam69a|67266|family with sequence similarity 69, member A	AK153488|Fam69a|67266|family with sequence similarity 69, member A	BC061013|Fam69a|67266|family with sequence similarity 69, member A	AK038811|Fam69a|67266|family with sequence similarity 69, member A	AK048979|Fam69a|67266|family with sequence similarity 69, member A	AK050305|Fam69a|67266|family with sequence similarity 69, member A	AK013580|Fam69a|67266|family with sequence similarity 69, member A	NM_026062|Fam69a|67266|family with sequence similarity 69, member A
mm9_v1_chr15_+_6658368_6658402	0.0245071	UCACAGU	AK029196|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036149|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036492|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK082586|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK087858|Rictor|78757|RPTOR independent companion of MTOR, complex 2	NM_030168|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY540053|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120903|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120904|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK019537|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK054119|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY497009|Rictor|78757|RPTOR independent companion of MTOR, complex 2
mm9_v1_chr7_+_4642529_4642529	0.0242563	UCACAGU	BC086636|Brsk1|381979|BR serine/threonine kinase 1	NM_001003920|Brsk1|381979|BR serine/threonine kinase 1	NM_001168572|Brsk1|381979|BR serine/threonine kinase 1
mm9_v1_chr10_-_80134720_80134753	0.0221442	UCACAGU	BC010256|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	NM_021462|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	Y11092|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr5_+_118619772_118619918	0.0212334	UCACAGU	BC128022|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	D83698|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	NM_007545|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm9_v1_chrX_+_138662479_138662479	0.0205571	UCACAGU	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr5_-_73647856_73647874	0.0199123	UCACAGU	AK164590|Fryl|72313|furry homolog-like (Drosophila)	NM_028194|Fryl|72313|furry homolog-like (Drosophila)
mm9_v1_chr8_-_72498210_72498309	0.0198736	UCACAGU	NM_001113346|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr3_+_96836314_96836366	0.0184051	UCACAGU	AY390401|Gja5|14613|gap junction protein, alpha 5	BC053054|Gja5|14613|gap junction protein, alpha 5	NM_008121|Gja5|14613|gap junction protein, alpha 5	AK137069|Gja5|14613|gap junction protein, alpha 5
mm9_v1_chr6_-_92484838_92484854	0.017585	UCACAGU	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr2_-_104334610_104334646	0.0163553	UCACAGU	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr7_+_133415982_133416132	0.0131767	UCACAGU	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chrX_+_38754480_38754557	0.012087	UCACAGU	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr12_-_70825850_70825878	0.0109211	UCACAGU	AK145228|L2hgdh|217666|L-2-hydroxyglutarate dehydrogenase	NM_145443|L2hgdh|217666|L-2-hydroxyglutarate dehydrogenase
mm9_v1_chr3_+_84668066_84668066	0.00783455	UCACAGU	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr7_-_91300359_91300442	0.00776973	UCACAGU	BC018511|Fam108c|70178|family with sequence similarity 108, member C	NM_133722|Fam108c|70178|family with sequence similarity 108, member C
mm9_v1_chr6_-_92656148_92656177	0.00698368	UCACAGU	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr16_-_3872273_3872373	0.00599103	UCACAGU	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr9_-_107192203_107192207	0.00453396	UCACAGU	AK170456|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	BC031467|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	NM_178907|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chr1_-_14299936_14300280	0.0033958	UCACAGU	BC066860|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK045320|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK042412|Eya1|14048|eyes absent 1 homolog (Drosophila)	BC060260|Eya1|14048|eyes absent 1 homolog (Drosophila)	NM_010164|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK153788|Eya1|14048|eyes absent 1 homolog (Drosophila)
