mm9_v1_chr11_-_11937330_11937512	10.1674	UCCAGUU	AK030727|Grb10|14783|growth factor receptor bound protein 10	BC053842|Grb10|14783|growth factor receptor bound protein 10	AF022072|Grb10|14783|growth factor receptor bound protein 10	AK012646|Grb10|14783|growth factor receptor bound protein 10	AK163841|Grb10|14783|growth factor receptor bound protein 10	AK032927|Grb10|14783|growth factor receptor bound protein 10	NM_010345|Grb10|14783|growth factor receptor bound protein 10	FJ425892|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr13_-_3917356_3917465	5.27814	UCCAGUU	AF094520|Net1|56349|neuroepithelial cell transforming gene 1	AK077728|Net1|56349|neuroepithelial cell transforming gene 1	NM_019671|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr5_+_143722032_143722059	4.59643	UCCAGUU	NM_007984|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK083935|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	AK167670|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC052408|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC029281|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC010338|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	BC037137|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	L33726|Fscn1|14086|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm9_v1_chr3_+_5218545_5218658	4.38143	UCCAGUU	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr6_+_30688050_30688066	4.30478	UCCAGUU	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr4_+_100449274_100449299	3.83431	UCCAGUU	AK080923|Cachd1|320508|cache domain containing 1	BC058676|Cachd1|320508|cache domain containing 1	NM_198037|Cachd1|320508|cache domain containing 1
mm9_v1_chr6_+_83087016_83087103	3.80065	UCCAGUU	NM_009106|Rtkn|20166|rhotekin	NM_133641|Rtkn|20166|rhotekin	U54638|Rtkn|20166|rhotekin	BC013820|Rtkn|20166|rhotekin
mm9_v1_chr6_-_31513817_31513936	3.54797	UCCAGUU	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr12_-_28027541_28027588	3.5428	UCCAGUU	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr4_+_148178500_148178594	3.53693	UCCAGUU	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr7_-_26035683_26035785	3.45479	UCCAGUU	BC063092|Erf|13875|Ets2 repressor factor	BC053045|Erf|13875|Ets2 repressor factor	BC059176|Erf|13875|Ets2 repressor factor	AK159225|Erf|13875|Ets2 repressor factor	NM_010155|Erf|13875|Ets2 repressor factor
mm9_v1_chr6_-_112897259_112897274	3.31633	UCCAGUU	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr11_+_112643501_112643595	3.31552	UCCAGUU	NM_011448|Sox9|20682|SRY-box containing gene 9	AK049986|Sox9|20682|SRY-box containing gene 9	AK030187|Sox9|20682|SRY-box containing gene 9	AK031516|Sox9|20682|SRY-box containing gene 9	BC023796|Sox9|20682|SRY-box containing gene 9	BC023808|Sox9|20682|SRY-box containing gene 9	BC024958|Sox9|20682|SRY-box containing gene 9	BC023953|Sox9|20682|SRY-box containing gene 9	AK220197|Sox9|20682|SRY-box containing gene 9	BC034264|Sox9|20682|SRY-box containing gene 9
mm9_v1_chr4_+_124663673_124663851	3.17081	UCCAGUU	AB016768|Rspo1|192199|R-spondin homolog (Xenopus laevis)	NM_138683|Rspo1|192199|R-spondin homolog (Xenopus laevis)	AK132277|Rspo1|192199|R-spondin homolog (Xenopus laevis)
mm9_v1_chr4_+_106584074_106584164	2.87596	UCCAGUU	AK017711|Ssbp3|72475|single-stranded DNA binding protein 3	NM_023672|Ssbp3|72475|single-stranded DNA binding protein 3	NM_198438|Ssbp3|72475|single-stranded DNA binding protein 3	AK011853|Ssbp3|72475|single-stranded DNA binding protein 3	BC035475|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr6_-_127100954_127101069	2.85275	UCCAGUU	M86182|Ccnd2|12444|cyclin D2	AK007904|Ccnd2|12444|cyclin D2	AK011412|Ccnd2|12444|cyclin D2	AK077367|Ccnd2|12444|cyclin D2	AK147345|Ccnd2|12444|cyclin D2	AK160751|Ccnd2|12444|cyclin D2	AK168954|Ccnd2|12444|cyclin D2	BC049086|Ccnd2|12444|cyclin D2	M83749|Ccnd2|12444|cyclin D2	NM_009829|Ccnd2|12444|cyclin D2
mm9_v1_chr2_+_14976877_14977152	2.78761	UCCAGUU	AK042200|Arl5b|75869|ADP-ribosylation factor-like 5B	AK040422|Arl5b|75869|ADP-ribosylation factor-like 5B	BC066810|Arl5b|75869|ADP-ribosylation factor-like 5B	AK041237|Arl5b|75869|ADP-ribosylation factor-like 5B	AK053731|Arl5b|75869|ADP-ribosylation factor-like 5B	NM_029466|Arl5b|75869|ADP-ribosylation factor-like 5B	AK164341|Arl5b|75869|ADP-ribosylation factor-like 5B	AK016359|Arl5b|75869|ADP-ribosylation factor-like 5B
mm9_v1_chr2_-_150835067_150835133	2.7442	UCCAGUU	AK129253|Ninl|78177|ninein-like	BC067071|Ninl|78177|ninein-like	NM_207204|Ninl|78177|ninein-like
mm9_v1_chr3_-_145312928_145312948	2.6539	UCCAGUU	BC066019|Cyr61|16007|cysteine rich protein 61	BC003205|Cyr61|16007|cysteine rich protein 61	AK156723|Cyr61|16007|cysteine rich protein 61	AK159452|Cyr61|16007|cysteine rich protein 61	M32490|Cyr61|16007|cysteine rich protein 61	NM_010516|Cyr61|16007|cysteine rich protein 61
mm9_v1_chr2_-_153067043_153067211	2.63541	UCCAGUU	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr10_+_12810593_12810650	2.48096	UCCAGUU	BC065150|Plagl1|22634|pleiomorphic adenoma gene-like 1	NM_009538|Plagl1|22634|pleiomorphic adenoma gene-like 1	AK142210|Plagl1|22634|pleiomorphic adenoma gene-like 1	AK142052|Plagl1|22634|pleiomorphic adenoma gene-like 1
mm9_v1_chr14_-_98568744_98568810	2.46695	UCCAGUU	AF129510|Dach1|13134|dachshund 1 (Drosophila)	BC052005|Dach1|13134|dachshund 1 (Drosophila)	BC059934|Dach1|13134|dachshund 1 (Drosophila)	NM_001038610|Dach1|13134|dachshund 1 (Drosophila)	NM_007826|Dach1|13134|dachshund 1 (Drosophila)
mm9_v1_chr2_-_102026486_102026616	2.224	UCCAGUU	AK032208|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	AK029683|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	NM_178886|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138178|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC145174|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138177|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3
mm9_v1_chr5_-_23536487_23536520	2.21725	UCCAGUU	BC060692|Fam126a|84652|family with sequence similarity 126, member A	AK155209|Fam126a|84652|family with sequence similarity 126, member A	NM_053090|Fam126a|84652|family with sequence similarity 126, member A
mm9_v1_chr3_-_142544883_142544984	2.16154	UCCAGUU	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr1_+_196446006_196446022	2.0405	UCCAGUU	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr4_+_148892231_148892432	1.96907	UCCAGUU	AK036181|Ctnnbip1|67087|catenin beta interacting protein 1	NM_023465|Ctnnbip1|67087|catenin beta interacting protein 1	AK048258|Ctnnbip1|67087|catenin beta interacting protein 1	BC038253|Ctnnbip1|67087|catenin beta interacting protein 1	BC018436|Ctnnbip1|67087|catenin beta interacting protein 1	AB021261|Ctnnbip1|67087|catenin beta interacting protein 1
mm9_v1_chr1_-_78193381_78193710	1.9632	UCCAGUU	BC048699|Pax3|18505|paired box gene 3	AK157760|Pax3|18505|paired box gene 3	AK012493|Pax3|18505|paired box gene 3	AK014337|Pax3|18505|paired box gene 3	AK044985|Pax3|18505|paired box gene 3	AK144973|Pax3|18505|paired box gene 3	AK147919|Pax3|18505|paired box gene 3	X59358|Pax3|18505|paired box gene 3	AK048723|Pax3|18505|paired box gene 3	AK083424|Pax3|18505|paired box gene 3	AK148354|Pax3|18505|paired box gene 3	AK045018|Pax3|18505|paired box gene 3	NM_001159520|Pax3|18505|paired box gene 3	NM_008781|Pax3|18505|paired box gene 3
mm9_v1_chr3_-_133207209_133207353	1.96153	UCCAGUU	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr1_+_12682510_12682540	1.94968	UCCAGUU	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr9_-_96918641_96918773	1.91297	UCCAGUU	BC055705|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AK142195|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AF403039|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	NM_145134|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4
mm9_v1_chr4_-_109960078_109960115	1.87978	UCCAGUU	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr9_-_63605745_63605800	1.87872	UCCAGUU	AK048626|Smad3|17127|MAD homolog 3 (Drosophila)	NM_016769|Smad3|17127|MAD homolog 3 (Drosophila)
mm9_v1_chr13_-_108680257_108680267	1.85225	UCCAGUU	NM_145456|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr5_-_86601756_86601789	1.80604	UCCAGUU	AK053583|Uba6|231380|ubiquitin-like modifier activating enzyme 6	BC063048|Uba6|231380|ubiquitin-like modifier activating enzyme 6	NM_172712|Uba6|231380|ubiquitin-like modifier activating enzyme 6	AK086539|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr16_+_17452048_17452310	1.7889	UCCAGUU	AK052315|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	AK048641|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	NM_007764|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	AK163981|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC023080|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	X90648|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC131984|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC131986|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm9_v1_chr15_+_57526212_57526467	1.78277	UCCAGUU	NM_199449|Zhx2|387609|zinc fingers and homeoboxes 2	AK157631|Zhx2|387609|zinc fingers and homeoboxes 2	AK031782|Zhx2|387609|zinc fingers and homeoboxes 2	BC059178|Zhx2|387609|zinc fingers and homeoboxes 2
mm9_v1_chr11_-_97049185_97049278	1.75888	UCCAGUU	BC055115|Kpnb1|16211|karyopherin (importin) beta 1	AK077709|Kpnb1|16211|karyopherin (importin) beta 1	NM_008379|Kpnb1|16211|karyopherin (importin) beta 1	AK147175|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr16_+_4639921_4640005	1.75803	UCCAGUU	AK132325|Vasn|246154|vasorin	NM_139307|Vasn|246154|vasorin	AK083684|Vasn|246154|vasorin	AK012169|Vasn|246154|vasorin	BC050274|Vasn|246154|vasorin	AJ458938|Vasn|246154|vasorin
mm9_v1_chr9_-_45792865_45792953	1.75506	UCCAGUU	AK164573|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK012116|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	U57747|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK012164|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC003771|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	BC002037|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC056211|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK011326|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK153424|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	NM_008775|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm9_v1_chr14_+_59820064_59820146	1.73773	UCCAGUU	NM_027764|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	AK089923|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	AK088299|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	BC067005|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	AK033501|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm9_v1_chr13_+_56804370_56804503	1.73662	UCCAGUU	NM_008541|Smad5|17129|MAD homolog 5 (Drosophila)	AK018077|Smad5|17129|MAD homolog 5 (Drosophila)	AF063006|Smad5|17129|MAD homolog 5 (Drosophila)	NM_001164041|Smad5|17129|MAD homolog 5 (Drosophila)	U58993|Smad5|17129|MAD homolog 5 (Drosophila)	AK139765|Smad5|17129|MAD homolog 5 (Drosophila)	BC048233|Smad5|17129|MAD homolog 5 (Drosophila)	BC050001|Smad5|17129|MAD homolog 5 (Drosophila)
mm9_v1_chr2_-_84490827_84490896	1.67161	UCCAGUU	BC054544|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC043108|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK161790|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK164485|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK168453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085448|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085449|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085450|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_007615|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr19_-_28085534_28085655	1.65996	UCCAGUU	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr9_+_65478364_65478420	1.65615	UCCAGUU	AK144659|Rbpms2|71973|RNA binding protein with multiple splicing 2	AK156633|Rbpms2|71973|RNA binding protein with multiple splicing 2	BC021788|Rbpms2|71973|RNA binding protein with multiple splicing 2	NM_028030|Rbpms2|71973|RNA binding protein with multiple splicing 2
mm9_v1_chr10_-_13043959_13044096	1.65211	UCCAGUU	BC130264|Phactr2|215789|phosphatase and actin regulator 2	AK142930|Phactr2|215789|phosphatase and actin regulator 2	NM_001033257|Phactr2|215789|phosphatase and actin regulator 2	NM_001195096|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr15_-_90880241_90880381	1.64023	UCCAGUU	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr18_+_83080270_83080270	1.62613	UCCAGUU	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr2_-_65405546_65405588	1.61301	UCCAGUU	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr3_+_102862151_102862295	1.5815	UCCAGUU	X13664|Nras|18176|neuroblastoma ras oncogene	NM_010937|Nras|18176|neuroblastoma ras oncogene	AK011704|Nras|18176|neuroblastoma ras oncogene	AK165960|Nras|18176|neuroblastoma ras oncogene	AK150357|Nras|18176|neuroblastoma ras oncogene	BC058755|Nras|18176|neuroblastoma ras oncogene	BC014704|Nras|18176|neuroblastoma ras oncogene	BC051443|Nras|18176|neuroblastoma ras oncogene
mm9_v1_chr12_+_21117592_21117662	1.58002	UCCAGUU	AK147622|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC080847|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001004364|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001098168|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001135192|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr4_-_131767968_131768170	1.54825	UCCAGUU	AK083882|Ythdf2|213541|YTH domain family 2	BC028994|Ythdf2|213541|YTH domain family 2	BC014797|Ythdf2|213541|YTH domain family 2	AK150350|Ythdf2|213541|YTH domain family 2	AK150669|Ythdf2|213541|YTH domain family 2	AK151392|Ythdf2|213541|YTH domain family 2	AK151862|Ythdf2|213541|YTH domain family 2	AK159548|Ythdf2|213541|YTH domain family 2	AK031616|Ythdf2|213541|YTH domain family 2	AK144209|Ythdf2|213541|YTH domain family 2	AK034655|Ythdf2|213541|YTH domain family 2	NM_145393|Ythdf2|213541|YTH domain family 2
mm9_v1_chr2_+_92024338_92024494	1.50735	UCCAGUU	NM_138755|Phf21a|192285|PHD finger protein 21A	AB105178|Phf21a|192285|PHD finger protein 21A	AK089411|Phf21a|192285|PHD finger protein 21A	BC019181|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr2_-_72817311_72817337	1.50008	UCCAGUU	AK088238|Sp3|20687|trans-acting transcription factor 3	NM_001098425|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr9_+_59139356_59139442	1.49475	UCCAGUU	AK048904|Adpgk|72141|ADP-dependent glucokinase	AK167634|Adpgk|72141|ADP-dependent glucokinase	NM_028121|Adpgk|72141|ADP-dependent glucokinase	BC094657|Adpgk|72141|ADP-dependent glucokinase	BC021526|Adpgk|72141|ADP-dependent glucokinase	AK149942|Adpgk|72141|ADP-dependent glucokinase	AK011434|Adpgk|72141|ADP-dependent glucokinase	AK169590|Adpgk|72141|ADP-dependent glucokinase	AK162169|Adpgk|72141|ADP-dependent glucokinase
mm9_v1_chr8_+_74659107_74659219	1.47618	UCCAGUU	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr11_+_77499638_77499656	1.47465	UCCAGUU	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chrX_-_138825032_138825081	1.44211	UCCAGUU	AK054387|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_001033600|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_019477|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_207625|Acsl4|50790|acyl-CoA synthetase long-chain family member 4
mm9_v1_chr2_-_103637096_103637239	1.41391	UCCAGUU	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr16_+_13256573_13256634	1.38882	UCCAGUU	NM_001122667|Mkl2|239719|MKL/myocardin-like 2	X66901|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr8_-_90483392_90483493	1.38458	UCCAGUU	AY256893|Zfp423|94187|zinc finger protein 423	AK122365|Zfp423|94187|zinc finger protein 423	NM_033327|Zfp423|94187|zinc finger protein 423
mm9_v1_chr10_-_9394979_9395005	1.36416	UCCAGUU	AK132444|Samd5|320825|sterile alpha motif domain containing 5	AK087498|Samd5|320825|sterile alpha motif domain containing 5	NM_177271|Samd5|320825|sterile alpha motif domain containing 5
mm9_v1_chr14_+_66456138_66456255	1.36151	UCCAGUU	AK078345|Ccdc25|67179|coiled-coil domain containing 25	NM_145944|Ccdc25|67179|coiled-coil domain containing 25	AK012172|Ccdc25|67179|coiled-coil domain containing 25	AK139180|Ccdc25|67179|coiled-coil domain containing 25	BC025545|Ccdc25|67179|coiled-coil domain containing 25	AK089982|Ccdc25|67179|coiled-coil domain containing 25	AK016286|Ccdc25|67179|coiled-coil domain containing 25	BC148235|Ccdc25|67179|coiled-coil domain containing 25	BC128015|Ccdc25|67179|coiled-coil domain containing 25
mm9_v1_chr6_-_39156706_39156787	1.28991	UCCAGUU	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr1_-_168339909_168339980	1.28633	UCCAGUU	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr4_+_21858472_21858503	1.18256	UCCAGUU	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr1_-_121545442_121545576	1.17796	UCCAGUU	AK034676|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK047523|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK173198|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	BC011476|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044959|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044996|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK079301|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK161141|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK027983|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK037024|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK136125|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK040354|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK167449|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_001113416|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_145506|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5
mm9_v1_chr13_+_56805028_56805028	1.14929	UCCAGUU	AK082997|Smad5|17129|MAD homolog 5 (Drosophila)	NM_001164042|Smad5|17129|MAD homolog 5 (Drosophila)
mm9_v1_chr2_-_74416925_74417031	1.13738	UCCAGUU	AY312281|Lnp|69605|limb and neural patterns	BC057961|Lnp|69605|limb and neural patterns	AK173241|Lnp|69605|limb and neural patterns	AK053593|Lnp|69605|limb and neural patterns	AK143497|Lnp|69605|limb and neural patterns	AK009311|Lnp|69605|limb and neural patterns	AK136506|Lnp|69605|limb and neural patterns	AK082900|Lnp|69605|limb and neural patterns	AK137445|Lnp|69605|limb and neural patterns	NM_001110209|Lnp|69605|limb and neural patterns	NM_027133|Lnp|69605|limb and neural patterns
mm9_v1_chr9_+_106356125_106356294	1.13688	UCCAGUU	NM_021567|Pcbp4|59092|poly(rC) binding protein 4	AK004580|Pcbp4|59092|poly(rC) binding protein 4	AK005383|Pcbp4|59092|poly(rC) binding protein 4	AK077632|Pcbp4|59092|poly(rC) binding protein 4	AK082005|Pcbp4|59092|poly(rC) binding protein 4	BC010694|Pcbp4|59092|poly(rC) binding protein 4	AF176328|Pcbp4|59092|poly(rC) binding protein 4
mm9_v1_chr11_-_102559011_102559087	1.13681	UCCAGUU	AK166820|Ccdc43|52715|coiled-coil domain containing 43	AK009319|Ccdc43|52715|coiled-coil domain containing 43	AK011254|Ccdc43|52715|coiled-coil domain containing 43	NM_025918|Ccdc43|52715|coiled-coil domain containing 43	AK028834|Ccdc43|52715|coiled-coil domain containing 43	AK161543|Ccdc43|52715|coiled-coil domain containing 43	BC058520|Ccdc43|52715|coiled-coil domain containing 43	BC061076|Ccdc43|52715|coiled-coil domain containing 43
mm9_v1_chr6_+_100783598_100783865	1.132	UCCAGUU	BC110429|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK082539|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	NM_182939|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK084169|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC112399|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC056340|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC098464|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2
mm9_v1_chr7_+_75097142_75097267	1.12821	UCCAGUU	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr9_+_102620096_102620187	1.11614	UCCAGUU	AK141348|Amotl2|56332|angiomotin-like 2	AK164819|Amotl2|56332|angiomotin-like 2	NM_019764|Amotl2|56332|angiomotin-like 2	AK077535|Amotl2|56332|angiomotin-like 2	AK169419|Amotl2|56332|angiomotin-like 2	BC035201|Amotl2|56332|angiomotin-like 2	BC027824|Amotl2|56332|angiomotin-like 2
mm9_v1_chr9_+_50665024_50665086	1.10368	UCCAGUU	NM_001034085|Ppp2r1b|73699|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	NM_028614|Ppp2r1b|73699|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	BC056218|Ppp2r1b|73699|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	AK136106|Ppp2r1b|73699|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	AK077158|Ppp2r1b|73699|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	AK161392|Ppp2r1b|73699|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform
mm9_v1_chr2_+_44966657_44966746	1.08334	UCCAGUU	BC031611|Gm13476|433424|predicted gene 13476	NM_001177394|Gm13476|433424|predicted gene 13476
mm9_v1_chr1_-_95375372_95375387	1.07149	UCCAGUU	BC027779|Hdlbp|110611|high density lipoprotein (HDL) binding protein	BC027788|Hdlbp|110611|high density lipoprotein (HDL) binding protein	NM_133808|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr2_+_92025639_92025639	1.06387	UCCAGUU	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr1_+_162836541_162836569	1.0621	UCCAGUU	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chr19_-_7315495_7315711	1.06153	UCCAGUU	AK202154|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK035418|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033510|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK170548|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033896|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK089209|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK162625|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	BC020020|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK016504|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	NM_027643|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm9_v1_chr17_+_78599556_78599594	1.02579	UCCAGUU	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr11_+_62944973_62945074	1.01826	UCCAGUU	NM_008885|Pmp22|18858|peripheral myelin protein 22	M32240|Pmp22|18858|peripheral myelin protein 22	BC010765|Pmp22|18858|peripheral myelin protein 22	AK076005|Pmp22|18858|peripheral myelin protein 22	AK171745|Pmp22|18858|peripheral myelin protein 22
mm9_v1_chr14_-_71166340_71166465	1.01368	UCCAGUU	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr1_+_153191613_153191716	0.994279	UCCAGUU	AL355706|Ivns1abp|117198|influenza virus NS1A binding protein	NM_001039511|Ivns1abp|117198|influenza virus NS1A binding protein	NM_001039512|Ivns1abp|117198|influenza virus NS1A binding protein	NM_054102|Ivns1abp|117198|influenza virus NS1A binding protein	AB055737|Ivns1abp|117198|influenza virus NS1A binding protein	AB055738|Ivns1abp|117198|influenza virus NS1A binding protein	AK145071|Ivns1abp|117198|influenza virus NS1A binding protein	AK144835|Ivns1abp|117198|influenza virus NS1A binding protein	AK146001|Ivns1abp|117198|influenza virus NS1A binding protein	AK159254|Ivns1abp|117198|influenza virus NS1A binding protein	BC040250|Ivns1abp|117198|influenza virus NS1A binding protein	AK144619|Ivns1abp|117198|influenza virus NS1A binding protein	AK146494|Ivns1abp|117198|influenza virus NS1A binding protein	AK146645|Ivns1abp|117198|influenza virus NS1A binding protein	DQ914522|Ivns1abp|117198|influenza virus NS1A binding protein	AK007291|Ivns1abp|117198|influenza virus NS1A binding protein	AK145845|Ivns1abp|117198|influenza virus NS1A binding protein	AK129229|Ivns1abp|117198|influenza virus NS1A binding protein	DQ914523|Ivns1abp|117198|influenza virus NS1A binding protein
mm9_v1_chr5_-_115584921_115584983	0.969885	UCCAGUU	AK045128|Unc119b|106840|unc-119 homolog B (C. elegans)	BC115529|Unc119b|106840|unc-119 homolog B (C. elegans)	BC112388|Unc119b|106840|unc-119 homolog B (C. elegans)	AK082614|Unc119b|106840|unc-119 homolog B (C. elegans)	NM_175352|Unc119b|106840|unc-119 homolog B (C. elegans)
mm9_v1_chr17_-_47970167_47970209	0.950335	UCCAGUU	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr1_+_63319842_63319842	0.944277	UCCAGUU	AK015271|Zdbf2|73884|zinc finger, DBF-type containing 2	AK132808|Zdbf2|73884|zinc finger, DBF-type containing 2	NM_028673|Zdbf2|73884|zinc finger, DBF-type containing 2
mm9_v1_chr9_-_75407338_75407491	0.939324	UCCAGUU	AF237630|Tmod3|50875|tropomodulin 3	AF177172|Tmod3|50875|tropomodulin 3	BC082595|Tmod3|50875|tropomodulin 3	AK167723|Tmod3|50875|tropomodulin 3	AK017725|Tmod3|50875|tropomodulin 3	AK050372|Tmod3|50875|tropomodulin 3	AK082971|Tmod3|50875|tropomodulin 3	AK147017|Tmod3|50875|tropomodulin 3	AK169218|Tmod3|50875|tropomodulin 3	NM_016963|Tmod3|50875|tropomodulin 3
mm9_v1_chr3_-_84024766_84024812	0.904722	UCCAGUU	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr1_+_36125177_36125272	0.903364	UCCAGUU	AK144809|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	BC052316|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	NM_015818|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	AB024566|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1
mm9_v1_chr11_-_77421308_77421363	0.90001	UCCAGUU	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr16_+_17233664_17233756	0.89862	UCCAGUU	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chr4_+_132194931_132195032	0.867459	UCCAGUU	AK164591|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_210071|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_211357|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK144653|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_010166|Eya3|14050|eyes absent 3 homolog (Drosophila)	BC052860|Eya3|14050|eyes absent 3 homolog (Drosophila)	U81604|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK017913|5830409B07Rik|76020|RIKEN cDNA 5830409B07 gene	BC063259|Eya3|14050|eyes absent 3 homolog (Drosophila)
mm9_v1_chr2_+_79547936_79548278	0.85918	UCCAGUU	AK051670|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	NM_172420|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC120706|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC132149|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK051449|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK157871|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK083940|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm9_v1_chr16_+_22009551_22009592	0.852182	UCCAGUU	NM_029457|Senp2|75826|SUMO/sentrin specific peptidase 2	AK031030|Senp2|75826|SUMO/sentrin specific peptidase 2	AK015987|Senp2|75826|SUMO/sentrin specific peptidase 2	BC031652|Senp2|75826|SUMO/sentrin specific peptidase 2	AF368904|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr10_-_116813919_116814033	0.834227	UCCAGUU	AK048615|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK046856|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK168764|Cpsf6|432508|cleavage and polyadenylation specific factor 6	BC068133|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK049749|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK077684|Cpsf6|432508|cleavage and polyadenylation specific factor 6	NM_001013391|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr16_-_45844409_45844495	0.822464	UCCAGUU	AK165251|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	AF506821|Phldb2|208177|pleckstrin homology-like domain, family B, member 2	NM_153412|Phldb2|208177|pleckstrin homology-like domain, family B, member 2
mm9_v1_chr10_+_17443024_17443226	0.816312	UCCAGUU	AK131664|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	AK133791|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	NM_010828|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	BC057126|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	U86445|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	Y15163|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm9_v1_chr13_-_3892788_3892823	0.814073	UCCAGUU	AJ010045|Net1|56349|neuroepithelial cell transforming gene 1	AK020636|Net1|56349|neuroepithelial cell transforming gene 1	AK088632|Net1|56349|neuroepithelial cell transforming gene 1	AK139921|Net1|56349|neuroepithelial cell transforming gene 1	BC004699|Net1|56349|neuroepithelial cell transforming gene 1	AK082128|Net1|56349|neuroepithelial cell transforming gene 1	NM_001047159|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr7_-_87065480_87065546	0.799418	UCCAGUU	U91933|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC060236|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC028319|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK037336|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK028372|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK083911|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK150085|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	NM_009682|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit
mm9_v1_chr16_+_32608981_32609106	0.779329	UCCAGUU	NM_011638|Tfrc|22042|transferrin receptor	AK048228|Tfrc|22042|transferrin receptor	AK088961|Tfrc|22042|transferrin receptor	BC054522|Tfrc|22042|transferrin receptor
mm9_v1_chr1_-_184271729_184271762	0.765377	UCCAGUU	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chr11_-_88579517_88579542	0.749228	UCCAGUU	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr19_+_5041341_5041422	0.739531	UCCAGUU	AF233580|Brms1|107392|breast cancer metastasis-suppressor 1	AK076729|Brms1|107392|breast cancer metastasis-suppressor 1	BC016108|Brms1|107392|breast cancer metastasis-suppressor 1	NM_134155|Brms1|107392|breast cancer metastasis-suppressor 1	BC003485|Brms1|107392|breast cancer metastasis-suppressor 1
mm9_v1_chr19_-_41876509_41876573	0.738482	UCCAGUU	AK220317|Arhgap19|71085|Rho GTPase activating protein 19	BC086680|Arhgap19|71085|Rho GTPase activating protein 19	AK044841|Arhgap19|71085|Rho GTPase activating protein 19	AK016763|Arhgap19|71085|Rho GTPase activating protein 19	AK164477|Arhgap19|71085|Rho GTPase activating protein 19	BC139195|Arhgap19|71085|Rho GTPase activating protein 19	NM_001163495|Arhgap19|71085|Rho GTPase activating protein 19	NM_027667|Arhgap19|71085|Rho GTPase activating protein 19
mm9_v1_chr5_+_28397902_28397951	0.722478	UCCAGUU	AK135941|Insig1|231070|insulin induced gene 1	AK135989|Insig1|231070|insulin induced gene 1	AK139913|Insig1|231070|insulin induced gene 1	AK151186|Insig1|231070|insulin induced gene 1	AK088380|Insig1|231070|insulin induced gene 1	AF527630|Insig1|231070|insulin induced gene 1	BC132167|Insig1|231070|insulin induced gene 1	BC132499|Insig1|231070|insulin induced gene 1	BC079559|Insig1|231070|insulin induced gene 1	NM_153526|Insig1|231070|insulin induced gene 1
mm9_v1_chr14_-_73109722_73109912	0.716941	UCCAGUU	AK089380|Fndc3a|319448|fibronectin type III domain containing 3A	AK032733|Fndc3a|319448|fibronectin type III domain containing 3A	AK164398|Fndc3a|319448|fibronectin type III domain containing 3A	AK048586|Fndc3a|319448|fibronectin type III domain containing 3A	DQ192036|Fndc3a|319448|fibronectin type III domain containing 3A	NM_207636|Fndc3a|319448|fibronectin type III domain containing 3A
mm9_v1_chr17_-_71351775_71351878	0.716145	UCCAGUU	NM_026064|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr11_-_96685326_96685440	0.697959	UCCAGUU	AK148471|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130453|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130454|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130451|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130452|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr11_-_69373707_69373738	0.688688	UCCAGUU	NM_007911|Efnb3|13643|ephrin B3
mm9_v1_chr13_+_112476313_112476385	0.684167	UCCAGUU	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr2_-_104656852_104656885	0.682074	UCCAGUU	NM_001123327|Qser1|99003|glutamine and serine rich 1
mm9_v1_chr1_-_58561631_58561830	0.677273	UCCAGUU	BC015257|Orc2|18393|origin recognition complex, subunit 2	NM_008765|Orc2|18393|origin recognition complex, subunit 2	U27457|Orc2|18393|origin recognition complex, subunit 2	AK048408|Orc2|18393|origin recognition complex, subunit 2	AK133604|Orc2|18393|origin recognition complex, subunit 2	AK146281|Orc2|18393|origin recognition complex, subunit 2	AK146859|Orc2|18393|origin recognition complex, subunit 2	AK051747|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr12_-_55963776_55963890	0.665227	UCCAGUU	AK147174|Cfl2|12632|cofilin 2, muscle	BC007138|Cfl2|12632|cofilin 2, muscle	AK004659|Cfl2|12632|cofilin 2, muscle	L29468|Cfl2|12632|cofilin 2, muscle	NM_007688|Cfl2|12632|cofilin 2, muscle
mm9_v1_chr11_+_116295406_116295422	0.662203	UCCAGUU	AK144901|Fam100b|319370|family with sequence similarity 100, member B	NM_176902|Fam100b|319370|family with sequence similarity 100, member B
mm9_v1_chr4_+_32504409_32504501	0.657692	UCCAGUU	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr7_-_128850659_128850766	0.65458	UCCAGUU	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr4_+_129497720_129497746	0.644101	UCCAGUU	NM_008974|Ptp4a2|19244|protein tyrosine phosphatase 4a2
mm9_v1_chr4_-_142802606_142802625	0.640285	UCCAGUU	AK087820|Prdm2|110593|PR domain containing 2, with ZNF domain	NM_001081355|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr15_-_79377170_79377216	0.639843	UCCAGUU	BC096036|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_001040187|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_199080|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr5_+_139676589_139676634	0.633378	UCCAGUU	AK014585|Sun1|77053|Sad1 and UNC84 domain containing 1	AK036187|Sun1|77053|Sad1 and UNC84 domain containing 1	AK161959|Sun1|77053|Sad1 and UNC84 domain containing 1	AK162533|Sun1|77053|Sad1 and UNC84 domain containing 1	AK167686|Sun1|77053|Sad1 and UNC84 domain containing 1	BC048156|Sun1|77053|Sad1 and UNC84 domain containing 1	BC047928|Sun1|77053|Sad1 and UNC84 domain containing 1	NM_024451|Sun1|77053|Sad1 and UNC84 domain containing 1	AK160281|Sun1|77053|Sad1 and UNC84 domain containing 1
mm9_v1_chr2_+_29917543_29917687	0.63252	UCCAGUU	BC018255|Set|56086|SET nuclear oncogene	NM_023871|Set|56086|SET nuclear oncogene	AB044937|Set|56086|SET nuclear oncogene	AK011630|Set|56086|SET nuclear oncogene	BC103791|Set|56086|SET nuclear oncogene
mm9_v1_chr4_+_129497951_129498025	0.632499	UCCAGUU	NM_001164745|Ptp4a2|19244|protein tyrosine phosphatase 4a2	AK018045|5830469G19Rik|76093|RIKEN cDNA 5830469G19 gene
mm9_v1_chr19_-_44144244_44144286	0.62367	UCCAGUU	AK145990|Erlin1|226144|ER lipid raft associated 1	NM_001164359|Erlin1|226144|ER lipid raft associated 1	NM_001164360|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chrX_+_17739762_17739792	0.622347	UCCAGUU	AK164941|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK144654|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK080370|Kdm6a|22289|4lysine (K)-specific demethylase 6A	BC053433|Kdm6a|22289|4lysine (K)-specific demethylase 6A	NM_009483|Kdm6a|22289|4lysine (K)-specific demethylase 6A
mm9_v1_chr10_+_127740390_127740482	0.615193	UCCAGUU	AK089001|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	NM_133992|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC075686|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK004773|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK048418|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK153343|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC079841|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK161547|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK047887|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK157800|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC020158|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC008521|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK034635|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr4_-_108506131_108506262	0.614264	UCCAGUU	BC024920|Btf3l4|70533|basic transcription factor 3-like 4	BC058282|Btf3l4|70533|basic transcription factor 3-like 4	AK011367|Btf3l4|70533|basic transcription factor 3-like 4	AK167256|Btf3l4|70533|basic transcription factor 3-like 4	BC138215|Btf3l4|70533|basic transcription factor 3-like 4	BC138216|Btf3l4|70533|basic transcription factor 3-like 4	BC024612|Btf3l4|70533|basic transcription factor 3-like 4	AK013120|Btf3l4|70533|basic transcription factor 3-like 4	AK076283|Btf3l4|70533|basic transcription factor 3-like 4	NM_027453|Btf3l4|70533|basic transcription factor 3-like 4	AK004239|Btf3l4|70533|basic transcription factor 3-like 4
mm9_v1_chr12_-_66174913_66174972	0.61056	UCCAGUU	AF110812|Fkbp3|30795|FK506 binding protein 3	AK012346|Fkbp3|30795|FK506 binding protein 3	NM_013902|Fkbp3|30795|FK506 binding protein 3	AF135595|Fkbp3|30795|FK506 binding protein 3	AK168641|Fkbp3|30795|FK506 binding protein 3	BC002122|Fkbp3|30795|FK506 binding protein 3	AK145648|Fkbp3|30795|FK506 binding protein 3	AK150802|Fkbp3|30795|FK506 binding protein 3
mm9_v1_chr2_-_119303348_119303443	0.608023	UCCAGUU	BC061495|Ino80|68142|INO80 homolog (S. cerevisiae)	AK040612|Ino80|68142|INO80 homolog (S. cerevisiae)	NM_026574|Ino80|68142|INO80 homolog (S. cerevisiae)
mm9_v1_chr9_+_44142772_44142803	0.607291	UCCAGUU	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chr7_-_144506112_144506127	0.598774	UCCAGUU	AK220542|Ebf3|13593|early B-cell factor 3	NM_001113414|Ebf3|13593|early B-cell factor 3	NM_001113415|Ebf3|13593|early B-cell factor 3	NM_010096|Ebf3|13593|early B-cell factor 3
mm9_v1_chr2_-_56967331_56967448	0.586172	UCCAGUU	S53744|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	AK158607|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	NM_013613|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr6_+_83085799_83085880	0.585514	UCCAGUU	NM_001136227|Rtkn|20166|rhotekin	AK164943|Rtkn|20166|rhotekin	AK076155|Rtkn|20166|rhotekin
mm9_v1_chr13_-_112280018_112280262	0.565988	UCCAGUU	BC067075|Gpbp1|73274|GC-rich promoter binding protein 1	AK136894|Gpbp1|73274|GC-rich promoter binding protein 1	AK161928|Gpbp1|73274|GC-rich promoter binding protein 1	BC094888|Gpbp1|73274|GC-rich promoter binding protein 1	AK169406|Gpbp1|73274|GC-rich promoter binding protein 1	AY382529|Gpbp1|73274|GC-rich promoter binding protein 1	AK082704|Gpbp1|73274|GC-rich promoter binding protein 1	BC096442|Gpbp1|73274|GC-rich promoter binding protein 1	BC076635|Gpbp1|73274|GC-rich promoter binding protein 1	AK163370|Gpbp1|73274|GC-rich promoter binding protein 1	AK135728|Gpbp1|73274|GC-rich promoter binding protein 1	AK145318|Gpbp1|73274|GC-rich promoter binding protein 1	AK163390|Gpbp1|73274|GC-rich promoter binding protein 1	NM_001122963|Gpbp1|73274|GC-rich promoter binding protein 1	NM_028487|Gpbp1|73274|GC-rich promoter binding protein 1	AK006608|Gpbp1|73274|GC-rich promoter binding protein 1
mm9_v1_chr9_+_44412931_44412987	0.564948	UCCAGUU	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr9_-_35007458_35007549	0.564649	UCCAGUU	AF378130|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK168494|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK036431|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK151117|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_001177847|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_001177846|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_054096|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
mm9_v1_chr3_-_65762057_65762146	0.561771	UCCAGUU	BC094383|Ccnl1|56706|cyclin L1	BC069909|Ccnl1|56706|cyclin L1	BC037204|Ccnl1|56706|cyclin L1	BC117816|Ccnl1|56706|cyclin L1	AF159159|Ccnl1|56706|cyclin L1	AK011629|Ccnl1|56706|cyclin L1	AK051380|Ccnl1|56706|cyclin L1	BC007177|Ccnl1|56706|cyclin L1	AF467251|Ccnl1|56706|cyclin L1	NM_019937|Ccnl1|56706|cyclin L1
mm9_v1_chrX_-_130432840_130432967	0.554196	UCCAGUU	AK160313|Tspan6|56496|tetraspanin 6	AK167384|Tspan6|56496|tetraspanin 6	AK146673|Tspan6|56496|tetraspanin 6	AK149204|Tspan6|56496|tetraspanin 6	BC110314|Tspan6|56496|tetraspanin 6	BC003733|Tspan6|56496|tetraspanin 6	NM_019656|Tspan6|56496|tetraspanin 6
mm9_v1_chr5_-_52581705_52581765	0.548736	UCCAGUU	BC003745|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	BC100343|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK146441|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK145983|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151015|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151757|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK149869|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168323|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168835|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK169174|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_001042620|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_007839|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr4_+_154865439_154865649	0.542093	UCCAGUU	NM_001160016|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_001160017|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_008142|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK156101|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	BC013058|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK163844|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr1_-_82287990_82288082	0.531864	UCCAGUU	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr2_+_73109981_73109991	0.529405	UCCAGUU	AY591908|Sp9|381373|trans-acting transcription factor 9	NM_001005343|Sp9|381373|trans-acting transcription factor 9	AK135123|Sp9|381373|trans-acting transcription factor 9
mm9_v1_chr4_+_59202363_59202463	0.528226	UCCAGUU	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr4_-_109959366_109959438	0.519335	UCCAGUU	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr14_-_111154292_111154370	0.517142	UCCAGUU	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr18_-_63851841_63852091	0.511151	UCCAGUU	AF052660|Txnl1|53382|thioredoxin-like 1	AK144211|Txnl1|53382|thioredoxin-like 1	AK150326|Txnl1|53382|thioredoxin-like 1	AK168712|Txnl1|53382|thioredoxin-like 1	AK150887|Txnl1|53382|thioredoxin-like 1	AK152101|Txnl1|53382|thioredoxin-like 1	AK150983|Txnl1|53382|thioredoxin-like 1	AK167954|Txnl1|53382|thioredoxin-like 1	AK051698|Txnl1|53382|thioredoxin-like 1	AK029807|Txnl1|53382|thioredoxin-like 1	NM_016792|Txnl1|53382|thioredoxin-like 1	BC061123|Txnl1|53382|thioredoxin-like 1
mm9_v1_chr13_-_41454358_41454379	0.509759	UCCAGUU	AK054179|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK033729|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_017464|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr11_+_115243203_115243359	0.504502	UCCAGUU	NM_001080929|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC144823|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC150668|Cdr2l|237988|cerebellar degeneration-related protein 2-like
mm9_v1_chr4_-_55545337_55545348	0.503538	UCCAGUU	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr17_+_83750246_83750339	0.502987	UCCAGUU	AK144604|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114361|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114362|Eml4|78798|echinoderm microtubule associated protein like 4	NM_199466|Eml4|78798|echinoderm microtubule associated protein like 4	BC067011|Eml4|78798|echinoderm microtubule associated protein like 4	BC070427|Eml4|78798|echinoderm microtubule associated protein like 4	BC065178|Eml4|78798|echinoderm microtubule associated protein like 4	BC066099|Eml4|78798|echinoderm microtubule associated protein like 4	BC079619|Eml4|78798|echinoderm microtubule associated protein like 4
mm9_v1_chr8_+_112302530_112302620	0.497124	UCCAGUU	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr11_+_77306825_77306918	0.493012	UCCAGUU	BC079870|Git1|216963|G protein-coupled receptor kinase-interactor 1	NM_001004144|Git1|216963|G protein-coupled receptor kinase-interactor 1
mm9_v1_chr4_+_107107195_107107323	0.490619	UCCAGUU	AF486579|Glis1|230587|GLIS family zinc finger 1	NM_147221|Glis1|230587|GLIS family zinc finger 1
mm9_v1_chr13_+_119503505_119503505	0.486528	UCCAGUU	AK045267|Fgf10|14165|fibroblast growth factor 10	NM_008002|Fgf10|14165|fibroblast growth factor 10
mm9_v1_chr2_-_37278415_37278506	0.486003	UCCAGUU	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr12_+_80130149_80130201	0.484687	UCCAGUU	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr7_-_117758413_117758468	0.477121	UCCAGUU	BC048706|Sbf2|319934|SET binding factor 2	AK080963|Sbf2|319934|SET binding factor 2	AK087396|Sbf2|319934|SET binding factor 2	AK080952|Sbf2|319934|SET binding factor 2	NM_177324|Sbf2|319934|SET binding factor 2	AK046622|Sbf2|319934|SET binding factor 2
mm9_v1_chr1_+_133807034_133807132	0.474889	UCCAGUU	NM_001145804|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	NM_175294|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AB049825|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AK078816|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	BC039951|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm9_v1_chr11_+_93747419_93747532	0.471175	UCCAGUU	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr19_-_7557690_7557778	0.467938	UCCAGUU	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chr11_+_115626733_115626761	0.460233	UCCAGUU	NM_028014|2310067B10Rik|71947|RIKEN cDNA 2310067B10 gene	AK155233|2310067B10Rik|71947|RIKEN cDNA 2310067B10 gene
mm9_v1_chr7_-_29383180_29383213	0.460107	UCCAGUU	AK129298|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4	NM_027470|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4
mm9_v1_chr9_-_62994774_62994817	0.445562	UCCAGUU	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr11_+_83116148_83116241	0.436419	UCCAGUU	AK138434|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_001035854|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_027915|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK030505|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	BC046772|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK032617|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit
mm9_v1_chr15_+_101004502_101004580	0.426924	UCCAGUU	BC145775|Acvr1b|11479|activin A receptor, type 1B	BC145777|Acvr1b|11479|activin A receptor, type 1B	AK154578|Acvr1b|11479|activin A receptor, type 1B	AK157910|Acvr1b|11479|activin A receptor, type 1B	NM_007395|Acvr1b|11479|activin A receptor, type 1B	BC059832|Acvr1b|11479|activin A receptor, type 1B	Z31663|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr1_+_12708582_12708625	0.388212	UCCAGUU	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr4_-_125879832_125879953	0.377134	UCCAGUU	AK034044|Thrap3|230753|thyroid hormone receptor associated protein 3	AK079601|Thrap3|230753|thyroid hormone receptor associated protein 3	BC026580|Thrap3|230753|thyroid hormone receptor associated protein 3	BC092239|Thrap3|230753|thyroid hormone receptor associated protein 3	AK169008|Thrap3|230753|thyroid hormone receptor associated protein 3	BC048391|Thrap3|230753|thyroid hormone receptor associated protein 3	NM_146153|Thrap3|230753|thyroid hormone receptor associated protein 3
mm9_v1_chr19_+_29064938_29065019	0.375552	UCCAGUU	AK078872|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK161465|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK018787|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK080238|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK012312|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	NM_025950|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	BC031761|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK038578|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK079556|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1
mm9_v1_chr10_+_98725858_98725868	0.370405	UCCAGUU	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr6_-_149050201_149050210	0.36289	UCCAGUU	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr2_+_173902521_173902654	0.356689	UCCAGUU	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr5_-_143874629_143874716	0.353572	UCCAGUU	AK089775|Rnf216|108086|ring finger protein 216	AK090306|Rnf216|108086|ring finger protein 216	AK147861|Rnf216|108086|ring finger protein 216	AK149741|Rnf216|108086|ring finger protein 216	AK154368|Rnf216|108086|ring finger protein 216	BC065066|Rnf216|108086|ring finger protein 216	NM_080561|Rnf216|108086|ring finger protein 216	NM_207110|Rnf216|108086|ring finger protein 216
mm9_v1_chr10_+_70810540_70810588	0.349876	UCCAGUU	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr5_-_4104696_4104696	0.345398	UCCAGUU	NM_020010|Cyp51|13121|cytochrome P450, family 51
mm9_v1_chr18_+_83084023_83084023	0.338295	UCCAGUU	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr3_+_19957807_19957987	0.313323	UCCAGUU	NM_009210|Hltf|20585|helicase-like transcription factor	NM_144959|Hltf|20585|helicase-like transcription factor	AK141235|Hltf|20585|helicase-like transcription factor	AF010600|Hltf|20585|helicase-like transcription factor	AF165911|Hltf|20585|helicase-like transcription factor	BC057116|Hltf|20585|helicase-like transcription factor	BC059240|Hltf|20585|helicase-like transcription factor	AK142961|Hltf|20585|helicase-like transcription factor	AK166911|Hltf|20585|helicase-like transcription factor	AB221636|Hltf|20585|helicase-like transcription factor
mm9_v1_chr5_+_102910409_102910555	0.30877	UCCAGUU	AK080986|Arhgap24|231532|Rho GTPase activating protein 24	NM_029270|Arhgap24|231532|Rho GTPase activating protein 24	NM_146161|Arhgap24|231532|Rho GTPase activating protein 24	AK052395|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr11_-_50729643_50729683	0.305181	UCCAGUU	BC057171|Zfp2|22678|zinc finger protein 2	AK042734|Zfp2|22678|zinc finger protein 2	AK141471|Zfp2|22678|zinc finger protein 2	BC089506|Zfp2|22678|zinc finger protein 2	AK131978|Zfp2|22678|zinc finger protein 2	NM_001044697|Zfp2|22678|zinc finger protein 2	NM_001044698|Zfp2|22678|zinc finger protein 2	NM_001044699|Zfp2|22678|zinc finger protein 2	NM_001044700|Zfp2|22678|zinc finger protein 2	AK036776|Zfp2|22678|zinc finger protein 2
mm9_v1_chr14_+_8650470_8650537	0.304116	UCCAGUU	NM_134080|Flnb|286940|filamin, beta	AK047011|Flnb|286940|filamin, beta
mm9_v1_chr8_-_75016484_75016582	0.301815	UCCAGUU	NM_177766|Slc35e1|270066|solute carrier family 35, member E1
mm9_v1_chr18_+_69505374_69505487	0.296807	UCCAGUU	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr7_+_148414663_148414708	0.29238	UCCAGUU	NM_001081118|Phrf1|101471|PHD and ring finger domains 1
mm9_v1_chr14_-_32643594_32643685	0.287012	UCCAGUU	BC051456|Ankrd28|105522|ankyrin repeat domain 28	BC094609|Ankrd28|105522|ankyrin repeat domain 28	NM_001024604|Ankrd28|105522|ankyrin repeat domain 28
mm9_v1_chr15_+_99803210_99803320	0.282565	UCCAGUU	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr9_+_43552516_43552726	0.281632	UCCAGUU	BC060694|Pvrl1|58235|poliovirus receptor-related 1	NM_021424|Pvrl1|58235|poliovirus receptor-related 1	AF297665|Pvrl1|58235|poliovirus receptor-related 1	AF239762|Pvrl1|58235|poliovirus receptor-related 1	AF270977|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr4_-_35104577_35104753	0.278284	UCCAGUU	AK039841|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK089781|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	BC020028|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	NM_178061|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK170973|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK087285|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)	AK155217|Mobkl2b|214944|MOB1, Mps One Binder kinase activator-like 2B (yeast)
mm9_v1_chr6_+_38383918_38383949	0.268115	UCCAGUU	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr17_+_79336458_79336518	0.26738	UCCAGUU	NM_028611|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene	AK010752|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene	AK090097|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene	BC108350|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene
mm9_v1_chr13_+_94827750_94827786	0.265124	UCCAGUU	AK087506|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2	NM_172589|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2	AK031635|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2	AK054342|Lhfpl2|218454|lipoma HMGIC fusion partner-like 2
mm9_v1_chr2_+_13995715_13995918	0.261566	UCCAGUU	AK144987|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK169170|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	BC044666|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	NM_011484|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK157767|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK162431|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK163720|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	BC055326|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK163922|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK035924|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK147832|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	U43900|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK179759|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm9_v1_chr16_-_98072833_98072833	0.254474	UCCAGUU	NM_144789|Prdm15|114604|PR domain containing 15
mm9_v1_chr6_+_146673451_146673548	0.254164	UCCAGUU	NM_172734|Stk38l|232533|serine/threonine kinase 38 like	AK052288|Stk38l|232533|serine/threonine kinase 38 like	AK045971|Stk38l|232533|serine/threonine kinase 38 like	AY223819|Stk38l|232533|serine/threonine kinase 38 like
mm9_v1_chrX_-_103124651_103124717	0.247391	UCCAGUU	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr2_-_131855722_131855755	0.246815	UCCAGUU	NM_175445|Rassf2|215653|Ras association (RalGDS/AF-6) domain family member 2
mm9_v1_chr13_+_47138896_47138963	0.245904	UCCAGUU	NM_172262|Kdm1b|218214|lysine (K)-specific demethylase 1B	BC023917|Kdm1b|218214|lysine (K)-specific demethylase 1B
mm9_v1_chr11_+_82594636_82594745	0.234571	UCCAGUU	NM_010716|Lig3|16882|ligase III, DNA, ATP-dependent	BC026143|Lig3|16882|ligase III, DNA, ATP-dependent	AK031540|Lig3|16882|ligase III, DNA, ATP-dependent	AK156018|Lig3|16882|ligase III, DNA, ATP-dependent	AK010719|Lig3|16882|ligase III, DNA, ATP-dependent	AK150644|Lig3|16882|ligase III, DNA, ATP-dependent	AK167363|Lig3|16882|ligase III, DNA, ATP-dependent	BC049240|Lig3|16882|ligase III, DNA, ATP-dependent	BC083500|Lig3|16882|ligase III, DNA, ATP-dependent	AK143531|Lig3|16882|ligase III, DNA, ATP-dependent
mm9_v1_chr12_+_85455277_85455306	0.233574	UCCAGUU	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr3_+_95908422_95908559	0.233156	UCCAGUU	AK044701|Otud7b|229603|OTU domain containing 7B	NM_001025613|Otud7b|229603|OTU domain containing 7B	NM_001025614|Otud7b|229603|OTU domain containing 7B	AK078327|Otud7b|229603|OTU domain containing 7B	BC141397|Otud7b|229603|OTU domain containing 7B	BC141398|Otud7b|229603|OTU domain containing 7B
mm9_v1_chr1_-_135557934_135557977	0.232333	UCCAGUU	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr17_-_68353397_68353499	0.231464	UCCAGUU	AK141901|Arhgap28|268970|Rho GTPase activating protein 28	BC066788|Arhgap28|268970|Rho GTPase activating protein 28	NM_172964|Arhgap28|268970|Rho GTPase activating protein 28	AK087523|Arhgap28|268970|Rho GTPase activating protein 28
mm9_v1_chr5_-_102498929_102498975	0.227542	UCCAGUU	AK047077|Wdfy3|72145|WD repeat and FYVE domain containing 3	AY336569|Wdfy3|72145|WD repeat and FYVE domain containing 3	NM_172882|Wdfy3|72145|WD repeat and FYVE domain containing 3
mm9_v1_chr12_-_80397239_80397289	0.215295	UCCAGUU	AK220333|Zfyve26|211978|zinc finger, FYVE domain containing 26	BC141359|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK132344|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK041668|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK135518|Zfyve26|211978|zinc finger, FYVE domain containing 26	NM_001008550|Zfyve26|211978|zinc finger, FYVE domain containing 26
mm9_v1_chrX_-_165015162_165015164	0.212416	UCCAGUU	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr14_-_122196929_122196955	0.210161	UCCAGUU	NM_134074|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr9_-_101154160_101154163	0.21014	UCCAGUU	NM_001161362|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr1_+_39957733_39957796	0.209706	UCCAGUU	NM_008696|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr2_-_104334610_104334646	0.208072	UCCAGUU	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr9_-_21602942_21603000	0.205106	UCCAGUU	BC010245|Kank2|235041|KN motif and ankyrin repeat domains 2	AK045492|Kank2|235041|KN motif and ankyrin repeat domains 2	BC006647|Kank2|235041|KN motif and ankyrin repeat domains 2	AK031324|Kank2|235041|KN motif and ankyrin repeat domains 2	AK049288|Kank2|235041|KN motif and ankyrin repeat domains 2	NM_145611|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chr11_-_70832737_70832807	0.201364	UCCAGUU	AF208064|Derl2|116891|Der1-like domain family, member 2	AK083632|Derl2|116891|Der1-like domain family, member 2	BC005682|Derl2|116891|Der1-like domain family, member 2	AK083725|Derl2|116891|Der1-like domain family, member 2	AK048627|Derl2|116891|Der1-like domain family, member 2	AK077659|Derl2|116891|Der1-like domain family, member 2	AK082564|Derl2|116891|Der1-like domain family, member 2	NM_033562|Derl2|116891|Der1-like domain family, member 2	AK090105|Derl2|116891|Der1-like domain family, member 2
mm9_v1_chr12_+_79849918_79849954	0.198122	UCCAGUU	NM_019579|Mpp5|56217|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm9_v1_chr19_+_42330170_42330274	0.197657	UCCAGUU	AK139354|Golga7b|71146|golgi autoantigen, golgin subfamily a, 7B	NM_027694|Golga7b|71146|golgi autoantigen, golgin subfamily a, 7B	BC049116|Golga7b|71146|golgi autoantigen, golgin subfamily a, 7B
mm9_v1_chr11_-_75161767_75161884	0.195283	UCCAGUU	AK177196|Rpa1|68275|replication protein A1	AK197958|Rpa1|68275|replication protein A1	AK203654|Rpa1|68275|replication protein A1	AK167598|Rpa1|68275|replication protein A1	AK150785|Rpa1|68275|replication protein A1	AK165316|Rpa1|68275|replication protein A1	BC019119|Rpa1|68275|replication protein A1	AK035084|Rpa1|68275|replication protein A1	AK152296|Rpa1|68275|replication protein A1	AK153107|Rpa1|68275|replication protein A1	AK165944|Rpa1|68275|replication protein A1	AK169599|Rpa1|68275|replication protein A1	AK148035|Rpa1|68275|replication protein A1	AK168400|Rpa1|68275|replication protein A1	AK151590|Rpa1|68275|replication protein A1	AK153144|Rpa1|68275|replication protein A1	NM_001164223|Rpa1|68275|replication protein A1	NM_026653|Rpa1|68275|replication protein A1
mm9_v1_chr1_-_16609325_16609423	0.192644	UCCAGUU	AK077997|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	BC020124|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK082233|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	NM_025773|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK042870|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK044463|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050679|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK015348|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK046086|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050923|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)
mm9_v1_chr16_+_44139908_44140168	0.18514	UCCAGUU	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr17_+_93598761_93598761	0.18496	UCCAGUU	BC057344|Adcyap1|11516|adenylate cyclase activating polypeptide 1	NM_009625|Adcyap1|11516|adenylate cyclase activating polypeptide 1
mm9_v1_chr1_-_24107142_24107222	0.18336	UCCAGUU	AK149303|Fam135a|68187|family with sequence similarity 135, member A	AK165306|Fam135a|68187|family with sequence similarity 135, member A	NM_026604|Fam135a|68187|family with sequence similarity 135, member A
mm9_v1_chr7_+_123236814_123237015	0.175825	UCCAGUU	AK003415|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK170172|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	BC072575|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK168206|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK167571|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK144059|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK169309|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AB025407|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	NM_019772|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK180958|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK182617|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene
mm9_v1_chr3_-_129672992_129673123	0.174332	UCCAGUU	AK152326|Ccdc109b|66815|coiled-coil domain containing 109B	AK018492|Ccdc109b|66815|coiled-coil domain containing 109B	AK150995|Ccdc109b|66815|coiled-coil domain containing 109B	AK154338|Ccdc109b|66815|coiled-coil domain containing 109B	AK150724|Ccdc109b|66815|coiled-coil domain containing 109B	AK151201|Ccdc109b|66815|coiled-coil domain containing 109B	AK151915|Ccdc109b|66815|coiled-coil domain containing 109B	BC049571|Ccdc109b|66815|coiled-coil domain containing 109B	NM_025779|Ccdc109b|66815|coiled-coil domain containing 109B
mm9_v1_chr9_-_101101334_101101402	0.173448	UCCAGUU	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr16_-_18235102_18235235	0.171816	UCCAGUU	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr1_+_44176812_44176851	0.171615	UCCAGUU	AK047404|Bivm|246229|basic, immunoglobulin-like variable motif containing	NM_144558|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK032375|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK034329|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chr13_-_41582649_41582707	0.170152	UCCAGUU	BC053713|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK083374|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK030985|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AF009366|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_001111324|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr3_-_51129908_51129958	0.166987	UCCAGUU	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr9_+_123438903_123439004	0.165364	UCCAGUU	AK089174|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK171080|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK122390|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	EF437383|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK161111|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	NM_030692|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AJ297526|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117752|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117753|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)
mm9_v1_chr15_+_101904203_101904238	0.165086	UCCAGUU	NM_145625|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr1_-_127331883_127332158	0.156416	UCCAGUU	AK147931|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK160047|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168568|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150487|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153204|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159668|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167891|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150991|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167148|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	BC005557|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	NM_023735|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168771|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150589|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159135|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK152865|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153150|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159775|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK004554|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK083343|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK145536|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153079|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)
mm9_v1_chr4_+_62280692_62280740	0.153438	UCCAGUU	AF319519|Rgs3|50780|regulator of G-protein signaling 3	NM_001081650|Rgs3|50780|regulator of G-protein signaling 3	NM_134257|Rgs3|50780|regulator of G-protein signaling 3	AK028445|Rgs3|50780|regulator of G-protein signaling 3	AF350047|Rgs3|50780|regulator of G-protein signaling 3
mm9_v1_chr11_-_102178559_102178600	0.150212	UCCAGUU	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr14_-_124591742_124591767	0.149994	UCCAGUU	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr11_+_95275392_95275501	0.144823	UCCAGUU	NM_025287|Spop|20747|speckle-type POZ protein	AK168546|Spop|20747|speckle-type POZ protein	AK030746|Spop|20747|speckle-type POZ protein	AK132383|Spop|20747|speckle-type POZ protein	BC045205|Spop|20747|speckle-type POZ protein	AK004669|Spop|20747|speckle-type POZ protein	AK159482|Spop|20747|speckle-type POZ protein	AK028201|Spop|20747|speckle-type POZ protein	BC064809|Spop|20747|speckle-type POZ protein	AK168185|Spop|20747|speckle-type POZ protein	AK166581|Spop|20747|speckle-type POZ protein	AK160858|Spop|20747|speckle-type POZ protein
mm9_v1_chr4_-_132019760_132019840	0.137283	UCCAGUU	BC068306|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012903|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012886|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	NM_026039|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK159696|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
mm9_v1_chr2_+_145611851_145611951	0.13632	UCCAGUU	NM_028724|Rin2|74030|Ras and Rab interactor 2	BC040390|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr13_-_85428957_85429102	0.135763	UCCAGUU	NM_145452|Rasa1|218397|RAS p21 protein activator 1	AK046620|Rasa1|218397|RAS p21 protein activator 1
mm9_v1_chr1_-_60623487_60623632	0.128565	UCCAGUU	NM_001045513|Raph1|77300|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm9_v1_chr19_+_8972532_8972606	0.128207	UCCAGUU	AK028655|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK030722|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK081915|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK149686|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC094437|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC117889|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	NM_008060|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	U92793|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK043606|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC128069|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC117888|Ganab|14376|alpha glucosidase 2 alpha neutral subunit
mm9_v1_chr4_-_110024513_110024515	0.123134	UCCAGUU	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr18_+_46901515_46901706	0.121859	UCCAGUU	AK152100|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	AK137489|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	NM_009681|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC108327|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	AK002565|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC012656|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC131985|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC145234|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	AF084575|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit
mm9_v1_chr7_-_88599560_88599643	0.117518	UCCAGUU	BC125476|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	BC144948|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	NM_007755|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	Y08260|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	AK136088|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1
mm9_v1_chr8_-_35040277_35040351	0.111132	UCCAGUU	AK041118|Rbpms|19663|RNA binding protein gene with multiple splicing	AK079238|Rbpms|19663|RNA binding protein gene with multiple splicing	BC030397|Rbpms|19663|RNA binding protein gene with multiple splicing	NM_001042674|Rbpms|19663|RNA binding protein gene with multiple splicing	NM_001042675|Rbpms|19663|RNA binding protein gene with multiple splicing	NM_019733|Rbpms|19663|RNA binding protein gene with multiple splicing
mm9_v1_chr2_+_28695925_28695978	0.11055	UCCAGUU	NM_001033294|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	AK030888|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
mm9_v1_chr18_-_6135924_6136095	0.108947	UCCAGUU	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr12_-_70782807_70782838	0.108885	UCCAGUU	NM_001135559|Sos2|20663|son of sevenless homolog 2 (Drosophila)
mm9_v1_chr13_+_9093121_9093197	0.107649	UCCAGUU	AK080953|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK160759|Larp4b|217980|La ribonucleoprotein domain family, member 4B	NM_172585|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK042491|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK172916|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC059218|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC086626|Larp4b|217980|La ribonucleoprotein domain family, member 4B
mm9_v1_chr4_-_115726466_115726490	0.100945	UCCAGUU	AK012994|Nsun4|72181|NOL1/NOP2/Sun domain family, member 4	NM_028142|Nsun4|72181|NOL1/NOP2/Sun domain family, member 4
mm9_v1_chr5_+_30559138_30559249	0.0948017	UCCAGUU	NM_027652|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040494|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK079325|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK083973|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK140416|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC106097|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK048011|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK014530|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC115783|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC117551|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK122544|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040745|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm9_v1_chr3_+_90070455_90070469	0.092093	UCCAGUU	NM_201407|Dennd4b|229541|DENN/MADD domain containing 4B	AK155638|Dennd4b|229541|DENN/MADD domain containing 4B
mm9_v1_chr11_+_52045464_52045596	0.0844503	UCCAGUU	NM_011543|Skp1a|21402|S-phase kinase-associated protein 1A	AK078330|Skp1a|21402|S-phase kinase-associated protein 1A	AK002983|Skp1a|21402|S-phase kinase-associated protein 1A	AK012498|Skp1a|21402|S-phase kinase-associated protein 1A	AK014245|Skp1a|21402|S-phase kinase-associated protein 1A	AK027909|Skp1a|21402|S-phase kinase-associated protein 1A	AK088339|Skp1a|21402|S-phase kinase-associated protein 1A	AK160198|Skp1a|21402|S-phase kinase-associated protein 1A	AK158209|Skp1a|21402|S-phase kinase-associated protein 1A	AK166673|Skp1a|21402|S-phase kinase-associated protein 1A	AK152609|Skp1a|21402|S-phase kinase-associated protein 1A	Z47088|Skp1a|21402|S-phase kinase-associated protein 1A	BC002115|Skp1a|21402|S-phase kinase-associated protein 1A	AF083214|Skp1a|21402|S-phase kinase-associated protein 1A
mm9_v1_chr2_-_7317824_7317824	0.0802671	UCCAGUU	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr3_+_52072251_52072295	0.0785166	UCCAGUU	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr5_+_32913539_32913707	0.0783498	UCCAGUU	AK035612|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK031316|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK052478|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	NM_009535|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	X67677|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	BC010594|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm9_v1_chr1_+_107886982_107886982	0.0750439	UCCAGUU	AK046562|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122675|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122676|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr11_-_113545329_113545497	0.0737656	UCCAGUU	AK009763|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159228|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK017659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK087540|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK028386|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	NM_138598|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed
mm9_v1_chr2_+_44967779_44967818	0.0721142	UCCAGUU	BC065800|Gm13476|433424|predicted gene 13476	NM_001177395|Gm13476|433424|predicted gene 13476
mm9_v1_chr2_-_72818502_72818502	0.0674816	UCCAGUU	BC079874|Sp3|20687|trans-acting transcription factor 3	NM_001018042|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr6_+_4853319_4853431	0.0668772	UCCAGUU	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr2_-_32306938_32306989	0.0659718	UCCAGUU	BC037109|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK132204|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK082756|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK049392|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164357|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_146118|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr10_-_80380806_80381016	0.0655221	UCCAGUU	AK180471|Lmnb2|16907|lamin B2	X54098|Lmnb2|16907|lamin B2	BC051985|Lmnb2|16907|lamin B2	BC042430|Lmnb2|16907|lamin B2	NM_010722|Lmnb2|16907|lamin B2
mm9_v1_chr10_+_127814144_127814228	0.0619736	UCCAGUU	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr1_-_121318824_121318824	0.060487	UCCAGUU	AK132352|Inhbb|16324|inhibin beta-B	NM_008381|Inhbb|16324|inhibin beta-B
mm9_v1_chr9_+_74918979_74919024	0.0589884	UCCAGUU	AK032713|Myo5a|17918|myosin VA	NM_010864|Myo5a|17918|myosin VA
mm9_v1_chr4_-_102887390_102887488	0.0524588	UCCAGUU	AK169775|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK220330|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049462|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK052968|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049180|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	BC115984|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	NM_177732|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm9_v1_chr11_+_45869473_45869501	0.049416	UCCAGUU	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr10_+_51953390_51953445	0.0469932	UCCAGUU	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr9_+_74823917_74823980	0.0465476	UCCAGUU	BC031353|BC031353|235493|cDNA sequence BC031353	NM_153584|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr7_-_13404178_13404219	0.0427434	UCCAGUU	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr5_-_53604673_53604743	0.0413394	UCCAGUU	AK122362|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)	NM_172710|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr5_-_36873134_36873271	0.0389629	UCCAGUU	AB064521|Tbc1d14|100855|TBC1 domain family, member 14	BC011420|Tbc1d14|100855|TBC1 domain family, member 14	AK013092|Tbc1d14|100855|TBC1 domain family, member 14	NM_001113364|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr11_-_103558971_103559046	0.0362882	UCCAGUU	AF007550|Gosr2|56494|golgi SNAP receptor complex member 2	BC051253|Gosr2|56494|golgi SNAP receptor complex member 2	AK005697|Gosr2|56494|golgi SNAP receptor complex member 2	AK002556|Gosr2|56494|golgi SNAP receptor complex member 2	BC008525|Gosr2|56494|golgi SNAP receptor complex member 2	AK013052|Gosr2|56494|golgi SNAP receptor complex member 2	AK150004|Gosr2|56494|golgi SNAP receptor complex member 2	NM_019650|Gosr2|56494|golgi SNAP receptor complex member 2
mm9_v1_chr14_-_100548982_100549014	0.0362757	UCCAGUU	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr2_+_102498839_102498845	0.035787	UCCAGUU	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr15_+_9070294_9070420	0.0344666	UCCAGUU	AK036527|Lmbrd2|320506|LMBR1 domain containing 2	AK079450|Lmbrd2|320506|LMBR1 domain containing 2	NM_177178|Lmbrd2|320506|LMBR1 domain containing 2	BC120727|Lmbrd2|320506|LMBR1 domain containing 2	BC125421|Lmbrd2|320506|LMBR1 domain containing 2	AK153728|Lmbrd2|320506|LMBR1 domain containing 2	BC095971|Lmbrd2|320506|LMBR1 domain containing 2
mm9_v1_chr11_+_121098532_121098610	0.0338745	UCCAGUU	NM_026272|Narf|67608|nuclear prelamin A recognition factor	AK076232|Narf|67608|nuclear prelamin A recognition factor	AK081305|Narf|67608|nuclear prelamin A recognition factor	AK013432|Narf|67608|nuclear prelamin A recognition factor	BC016090|Narf|67608|nuclear prelamin A recognition factor
mm9_v1_chr15_-_84818368_84818512	0.0311474	UCCAGUU	AK149782|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	NM_001033273|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	AK170532|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene
mm9_v1_chr2_-_56976413_56976478	0.0296847	UCCAGUU	NM_001139509|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr7_-_72301384_72301483	0.0288743	UCCAGUU	NM_183087|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr15_-_27955602_27955621	0.0282873	UCCAGUU	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr1_+_182656137_182656231	0.019284	UCCAGUU	AF022770|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	AK030371|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	NM_133225|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	AK167272|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	AK168799|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	BC050121|Acbd3|170760|acyl-Coenzyme A binding domain containing 3	BC060602|Acbd3|170760|acyl-Coenzyme A binding domain containing 3
mm9_v1_chr10_+_93103715_93103796	0.0157407	UCCAGUU	NM_021320|Ntn4|57764|netrin 4
mm9_v1_chr16_+_13358513_13358556	0.013437	UCCAGUU	NM_153588|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr2_+_156022382_156022502	0.0130538	UCCAGUU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr2_+_116947185_116947185	0.0119478	UCCAGUU	BC079606|Spred1|114715|sprouty protein with EVH-1 domain 1, related sequence	NM_033524|Spred1|114715|sprouty protein with EVH-1 domain 1, related sequence
mm9_v1_chr11_+_46268432_46268486	0.0115198	UCCAGUU	AK148474|Havcr2|171285|hepatitis A virus cellular receptor 2	NM_134250|Havcr2|171285|hepatitis A virus cellular receptor 2	AF450241|Havcr2|171285|hepatitis A virus cellular receptor 2	AY553334|Havcr2|171285|hepatitis A virus cellular receptor 2	AK170775|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106851|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106852|Havcr2|171285|hepatitis A virus cellular receptor 2	AF399831|Havcr2|171285|hepatitis A virus cellular receptor 2
mm9_v1_chr1_+_37426061_37426065	0.0102512	UCCAGUU	AK035867|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC120541|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144747|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144748|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_172971|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr15_+_85166667_85166841	0.00848208	UCCAGUU	BC046802|Atxn10|54138|ataxin 10	X61506|Atxn10|54138|ataxin 10	AK002504|Atxn10|54138|ataxin 10	AK166899|Atxn10|54138|ataxin 10	AK078459|Atxn10|54138|ataxin 10	AK047170|Atxn10|54138|ataxin 10	AK049706|Atxn10|54138|ataxin 10	AK170751|Atxn10|54138|ataxin 10	AK165941|Atxn10|54138|ataxin 10	AK161950|Atxn10|54138|ataxin 10	AK170507|Atxn10|54138|ataxin 10	BC016410|Atxn10|54138|ataxin 10	AK077738|Atxn10|54138|ataxin 10	AK153271|Atxn10|54138|ataxin 10	NM_016843|Atxn10|54138|ataxin 10
mm9_v1_chr9_-_79566271_79566499	0.00558652	UCCAGUU	U25652|Col12a1|12816|collagen, type XII, alpha 1	NM_007730|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr11_-_96690784_96690815	0.00318172	UCCAGUU	AK154167|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK085935|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130450|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
