mm9_v1_chr4_-_8166182_8166192	9.57369	UGCAUUG	AK004896|Car8|12319|carbonic anhydrase 8	AK004923|Car8|12319|carbonic anhydrase 8	NM_007592|Car8|12319|carbonic anhydrase 8
mm9_v1_chr2_+_138104219_138104260	7.0556	UGCAUUG	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr4_-_53172748_53172872	5.48224	UGCAUUG	AK051920|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1	NM_013454|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr10_-_49508472_49508559	4.51387	UGCAUUG	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr4_+_97248556_97248685	4.16064	UGCAUUG	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr1_+_189821727_189821874	3.42286	UGCAUUG	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr16_-_67621054_67621188	3.27247	UGCAUUG	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr7_+_129432585_129432762	3.08786	UGCAUUG	NM_008855|Prkcb|18751|protein kinase C, beta	AK051862|Prkcb|18751|protein kinase C, beta
mm9_v1_chr5_+_104864136_104864144	2.9154	UGCAUUG	AK160540|Spp1|20750|secreted phosphoprotein 1	NM_009263|Spp1|20750|secreted phosphoprotein 1	AK133555|Spp1|20750|secreted phosphoprotein 1	AK145099|Spp1|20750|secreted phosphoprotein 1	AK149588|Spp1|20750|secreted phosphoprotein 1	AK150819|Spp1|20750|secreted phosphoprotein 1	AK150845|Spp1|20750|secreted phosphoprotein 1	AK151562|Spp1|20750|secreted phosphoprotein 1	AK153089|Spp1|20750|secreted phosphoprotein 1	AK154908|Spp1|20750|secreted phosphoprotein 1	AK165393|Spp1|20750|secreted phosphoprotein 1	AK165965|Spp1|20750|secreted phosphoprotein 1	AK166395|Spp1|20750|secreted phosphoprotein 1	AK171158|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr15_+_40486577_40486623	2.85314	UGCAUUG	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr4_-_136512727_136512761	2.82729	UGCAUUG	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr7_-_148615247_148615354	2.79794	UGCAUUG	AF243130|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK005092|Cend1|57754|cell cycle exit and neuronal differentiation 1	BC023032|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK079045|Cend1|57754|cell cycle exit and neuronal differentiation 1	NM_021316|Cend1|57754|cell cycle exit and neuronal differentiation 1
mm9_v1_chr13_-_105844882_105845009	2.75712	UGCAUUG	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr2_+_156301543_156301577	2.62787	UGCAUUG	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr3_-_81949667_81949798	2.41154	UGCAUUG	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr2_-_7002344_7002370	2.24215	UGCAUUG	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr4_+_97444312_97444317	2.17829	UGCAUUG	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr10_+_4424140_4424212	2.11699	UGCAUUG	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr2_-_6805937_6806041	1.61935	UGCAUUG	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr13_+_118391126_118391233	1.54773	UGCAUUG	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr5_+_130924661_130924722	1.53008	UGCAUUG	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr17_-_91492065_91492142	1.49704	UGCAUUG	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr2_+_156246644_156246847	1.49403	UGCAUUG	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr2_+_35477498_35477550	1.44861	UGCAUUG	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr9_-_54349409_54349432	1.21785	UGCAUUG	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr5_-_90312358_90312358	1.17231	UGCAUUG	AK031900|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_001081401|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_177872|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm9_v1_chr10_-_67011689_67011747	1.08062	UGCAUUG	BC057106|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	BC058407|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	AK155334|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	NM_001005419|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase
mm9_v1_chr19_+_3323262_3323319	1.0477	UGCAUUG	NM_013495|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	BC054791|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver
mm9_v1_chr7_+_54305973_54306101	1.03897	UGCAUUG	AK007864|Tmem86a|67893|transmembrane protein 86A	NM_026436|Tmem86a|67893|transmembrane protein 86A	AK075589|Tmem86a|67893|transmembrane protein 86A	BC056619|Tmem86a|67893|transmembrane protein 86A
mm9_v1_chr15_+_100701068_100701116	1.02726	UGCAUUG	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr16_+_95923988_95924060	0.983066	UGCAUUG	NM_011809|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK038348|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr6_+_71657791_71657963	0.982564	UGCAUUG	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr5_-_69732915_69732947	0.887277	UGCAUUG	AK039167|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK043351|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK047519|Kctd8|243043|potassium channel tetramerisation domain containing 8	AY615967|Kctd8|243043|potassium channel tetramerisation domain containing 8	NM_175519|Kctd8|243043|potassium channel tetramerisation domain containing 8
mm9_v1_chr6_-_56312170_56312512	0.804819	UGCAUUG	AK082497|Pde1c|18575|phosphodiesterase 1C	BC032277|Pde1c|18575|phosphodiesterase 1C	AK139923|Pde1c|18575|phosphodiesterase 1C	AK017183|Pde1c|18575|phosphodiesterase 1C	AK082180|Pde1c|18575|phosphodiesterase 1C	AK030423|Pde1c|18575|phosphodiesterase 1C	NM_001025568|Pde1c|18575|phosphodiesterase 1C	NM_001159952|Pde1c|18575|phosphodiesterase 1C	NM_001159953|Pde1c|18575|phosphodiesterase 1C	L76946|Pde1c|18575|phosphodiesterase 1C	NM_011054|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr19_+_38339167_38339370	0.782141	UGCAUUG	AK045443|Lgi1|56839|leucine-rich repeat LGI family, member 1	BC066090|Lgi1|56839|leucine-rich repeat LGI family, member 1	NM_020278|Lgi1|56839|leucine-rich repeat LGI family, member 1	AF246818|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK035873|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK031996|Lgi1|56839|leucine-rich repeat LGI family, member 1
mm9_v1_chr8_-_97400173_97400261	0.781252	UGCAUUG	BC004705|Dok4|114255|docking protein 4	AK032352|Dok4|114255|docking protein 4	AK077612|Dok4|114255|docking protein 4	AK156485|Dok4|114255|docking protein 4	NM_053246|Dok4|114255|docking protein 4
mm9_v1_chr14_+_120877548_120877707	0.776538	UGCAUUG	AK140318|Rap2a|76108|RAS related protein 2a	BC067194|Rap2a|76108|RAS related protein 2a	BC049084|Rap2a|76108|RAS related protein 2a	BC053003|Rap2a|76108|RAS related protein 2a	NM_029519|Rap2a|76108|RAS related protein 2a	AK018024|Rap2a|76108|RAS related protein 2a
mm9_v1_chrX_+_20265590_20265887	0.73778	UGCAUUG	AK143518|Cdk16|18555|cyclin-dependent kinase 16	AK051425|Cdk16|18555|cyclin-dependent kinase 16	NM_011049|Cdk16|18555|cyclin-dependent kinase 16	AK211169|Cdk16|18555|cyclin-dependent kinase 16	BC011069|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr2_-_37502738_37502804	0.705409	UGCAUUG	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr17_+_25945986_25946050	0.700982	UGCAUUG	NM_001164225|Fbxl16|214931|F-box and leucine-rich repeat protein 16
mm9_v1_chr19_-_58935470_58935484	0.694423	UGCAUUG	AY196789|Hspa12a|73442|heat shock protein 12A	AK141925|Hspa12a|73442|heat shock protein 12A	NM_175199|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr15_+_88692581_88692634	0.691439	UGCAUUG	AK168014|Pim3|223775|proviral integration site 3	BC017621|Pim3|223775|proviral integration site 3	NM_145478|Pim3|223775|proviral integration site 3
mm9_v1_chr3_+_135488617_135488753	0.686591	UGCAUUG	AK085740|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135149|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135150|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr17_-_64681166_64681295	0.667692	UGCAUUG	AK122282|Pja2|224938|praja 2, RING-H2 motif containing	AK168371|Pja2|224938|praja 2, RING-H2 motif containing	AK144586|Pja2|224938|praja 2, RING-H2 motif containing	NM_001025309|Pja2|224938|praja 2, RING-H2 motif containing	NM_144859|Pja2|224938|praja 2, RING-H2 motif containing	AK164025|Pja2|224938|praja 2, RING-H2 motif containing	AF493070|Pja2|224938|praja 2, RING-H2 motif containing
mm9_v1_chr3_-_51364525_51364799	0.634727	UGCAUUG	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr11_+_115891591_115891668	0.599514	UGCAUUG	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr5_+_130845319_130845359	0.596377	UGCAUUG	NM_181045|Caln1|140904|calneuron 1	AF282251|Caln1|140904|calneuron 1	AK035865|Caln1|140904|calneuron 1
mm9_v1_chr15_-_81846328_81846578	0.59037	UGCAUUG	AK189878|Pppde2|28075|PPPDE peptidase domain containing 2	BC071205|Pppde2|28075|PPPDE peptidase domain containing 2	BC131979|Pppde2|28075|PPPDE peptidase domain containing 2	BC132642|Pppde2|28075|PPPDE peptidase domain containing 2	BC145235|Pppde2|28075|PPPDE peptidase domain containing 2	AK016347|Pppde2|28075|PPPDE peptidase domain containing 2	AK131703|Pppde2|28075|PPPDE peptidase domain containing 2	AK005963|Pppde2|28075|PPPDE peptidase domain containing 2	AK005706|Pppde2|28075|PPPDE peptidase domain containing 2	BC056972|Pppde2|28075|PPPDE peptidase domain containing 2	NM_134095|Pppde2|28075|PPPDE peptidase domain containing 2
mm9_v1_chr3_-_116510948_116511083	0.567447	UGCAUUG	AK087855|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK041661|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK036225|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	NM_001081326|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm9_v1_chr5_+_3344201_3344322	0.561753	UGCAUUG	AK078973|Cdk6|12571|cyclin-dependent kinase 6	AF132483|Cdk6|12571|cyclin-dependent kinase 6	NM_009873|Cdk6|12571|cyclin-dependent kinase 6	BC119360|Cdk6|12571|cyclin-dependent kinase 6	BC120595|Cdk6|12571|cyclin-dependent kinase 6
mm9_v1_chr19_+_43514902_43514932	0.555427	UGCAUUG	NM_031396|Cnnm1|83674|cyclin M1
mm9_v1_chr10_-_126648509_126648683	0.527588	UGCAUUG	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr3_+_135488454_135488592	0.520154	UGCAUUG	AK028215|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_026228|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	AK016853|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr3_-_26230791_26230830	0.504444	UGCAUUG	AK083116|Nlgn1|192167|neuroligin 1	AK122433|Nlgn1|192167|neuroligin 1	NM_138666|Nlgn1|192167|neuroligin 1
mm9_v1_chr11_-_103815361_103815405	0.490911	UGCAUUG	BC006627|Nsf|18195|N-ethylmaleimide sensitive fusion protein	NM_008740|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr8_+_113443764_113443921	0.486535	UGCAUUG	NM_009179|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK031052|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK034863|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK053827|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK029246|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	BC066064|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
mm9_v1_chr14_-_31166671_31166671	0.474317	UGCAUUG	AK147415|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_001083616|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr9_+_32503600_32503674	0.42727	UGCAUUG	NM_001038642|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	NM_011808|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	BC010588|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK168247|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain
mm9_v1_chr9_-_56533004_56533059	0.42222	UGCAUUG	BC065696|Lingo1|235402|leucine rich repeat and Ig domain containing 1	BC052384|Lingo1|235402|leucine rich repeat and Ig domain containing 1	NM_181074|Lingo1|235402|leucine rich repeat and Ig domain containing 1
mm9_v1_chr7_+_58766387_58766476	0.41523	UGCAUUG	AK038750|Ano5|233246|anoctamin 5	AB125740|Ano5|233246|anoctamin 5	AB206762|Ano5|233246|anoctamin 5	NM_177694|Ano5|233246|anoctamin 5	AK034197|Ano5|233246|anoctamin 5	BC109163|Ano5|233246|anoctamin 5
mm9_v1_chr11_-_29147217_29147312	0.401617	UGCAUUG	BC005731|Ccdc104|216618|coiled-coil domain containing 104	AK075858|Ccdc104|216618|coiled-coil domain containing 104	NM_025740|Ccdc104|216618|coiled-coil domain containing 104	AK010468|Ccdc104|216618|coiled-coil domain containing 104	AK016479|Ccdc104|216618|coiled-coil domain containing 104
mm9_v1_chr1_-_178205404_178205442	0.389741	UGCAUUG	AK043287|Pld5|319455|phospholipase D family, member 5	AK046294|Pld5|319455|phospholipase D family, member 5	AK144116|Pld5|319455|phospholipase D family, member 5	AK136851|Pld5|319455|phospholipase D family, member 5	AK136888|Pld5|319455|phospholipase D family, member 5	NM_176916|Pld5|319455|phospholipase D family, member 5
mm9_v1_chr2_-_32286633_32286688	0.370529	UGCAUUG	BC066998|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164358|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr13_-_104710374_104710739	0.368578	UGCAUUG	BC141178|Erbb2ip|59079|Erbb2 interacting protein	BC141188|Erbb2ip|59079|Erbb2 interacting protein	BC145498|Erbb2ip|59079|Erbb2 interacting protein	BC145509|Erbb2ip|59079|Erbb2 interacting protein	AK169529|Erbb2ip|59079|Erbb2 interacting protein	NM_001005868|Erbb2ip|59079|Erbb2 interacting protein	NM_021563|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr9_+_96096690_96096766	0.361253	UGCAUUG	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr11_-_45979836_45979862	0.353605	UGCAUUG	AK035736|Nipal4|214112|NIPA-like domain containing 4	BC139819|Nipal4|214112|NIPA-like domain containing 4	AK035561|Nipal4|214112|NIPA-like domain containing 4	NM_172524|Nipal4|214112|NIPA-like domain containing 4
mm9_v1_chr1_-_58642994_58643176	0.326437	UGCAUUG	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr11_+_35582969_35582996	0.324848	UGCAUUG	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr1_-_52290058_52290076	0.324245	UGCAUUG	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr2_+_164793487_164793487	0.309003	UGCAUUG	AK147262|Slc12a5|57138|solute carrier family 12, member 5	NM_020333|Slc12a5|57138|solute carrier family 12, member 5
mm9_v1_chr11_-_79344055_79344121	0.30555	UGCAUUG	AK046407|Evi2a|14017|ecotropic viral integration site 2a	BC038124|Evi2a|14017|ecotropic viral integration site 2a	AK170527|Evi2a|14017|ecotropic viral integration site 2a	AK005353|Evi2a|14017|ecotropic viral integration site 2a	NM_146023|Evi2b|216984|ecotropic viral integration site 2b	NM_001033711|Evi2a|14017|ecotropic viral integration site 2a	NM_010161|Evi2a|14017|ecotropic viral integration site 2a
mm9_v1_chr1_-_178143971_178144072	0.296633	UGCAUUG	AK082725|Pld5|319455|phospholipase D family, member 5	NM_001195816|Pld5|319455|phospholipase D family, member 5
mm9_v1_chrX_-_101176600_101176631	0.269026	UGCAUUG	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr1_+_120285634_120285634	0.268637	UGCAUUG	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr11_+_105451296_105451348	0.264654	UGCAUUG	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr13_-_49063188_49063196	0.262493	UGCAUUG	BC158134|Fam120a|218236|family with sequence similarity 120, member A	NM_001033268|Fam120a|218236|family with sequence similarity 120, member A
mm9_v1_chr17_+_29169579_29169604	0.258488	UGCAUUG	NM_013663|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr11_-_84953442_84953491	0.238185	UGCAUUG	AK170234|Usp32|237898|ubiquitin specific peptidase 32	AK148221|Usp32|237898|ubiquitin specific peptidase 32	NM_001029934|Usp32|237898|ubiquitin specific peptidase 32
mm9_v1_chr12_+_3426883_3427022	0.231492	UGCAUUG	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr17_+_26852581_26852657	0.23	UGCAUUG	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr4_-_133843746_133843812	0.229416	UGCAUUG	BC058514|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_146156|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK164975|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr11_-_106649652_106649810	0.220403	UGCAUUG	BC108369|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK203495|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129873|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC129874|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC086320|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC046554|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	X65627|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	BC062916|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK044792|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK076018|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK088887|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK129022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK135173|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	AK166045|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	NM_007840|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr16_-_21694608_21694737	0.203055	UGCAUUG	AK051892|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK044207|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK053253|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC072629|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC052490|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	NM_001001881|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene
mm9_v1_chr10_+_98725858_98725868	0.197908	UGCAUUG	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr9_+_77956998_77957048	0.196708	UGCAUUG	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr7_+_80520360_80520429	0.195514	UGCAUUG	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr7_+_94732677_94732677	0.187496	UGCAUUG	NM_001081414|Grm5|108071|glutamate receptor, metabotropic 5	NM_001143834|Grm5|108071|glutamate receptor, metabotropic 5
mm9_v1_chr12_-_14158843_14158897	0.185162	UGCAUUG	BC005488|Fam84a|105005|family with sequence similarity 84, member A	NM_029007|Fam84a|105005|family with sequence similarity 84, member A	AK014625|Fam84a|105005|family with sequence similarity 84, member A
mm9_v1_chr2_-_101489613_101489698	0.175651	UGCAUUG	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr2_+_76244578_76244594	0.162675	UGCAUUG	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr2_-_7317513_7317626	0.162044	UGCAUUG	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr14_-_21613162_21613325	0.160174	UGCAUUG	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr5_+_13399301_13399308	0.134161	UGCAUUG	D85028|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	NM_009152|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr8_+_12757011_12757296	0.131764	UGCAUUG	AK147497|Atp11a|50770|ATPase, class VI, type 11A	NM_015804|Atp11a|50770|ATPase, class VI, type 11A	AF156551|Atp11a|50770|ATPase, class VI, type 11A	BC145399|Atp11a|50770|ATPase, class VI, type 11A	BC145400|Atp11a|50770|ATPase, class VI, type 11A	BC138715|Atp11a|50770|ATPase, class VI, type 11A
mm9_v1_chr19_+_38911056_38911166	0.129803	UGCAUUG	AK172979|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	NM_145952|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138056|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138057|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC145129|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12
mm9_v1_chr6_+_8459595_8459595	0.106949	UGCAUUG	NM_133236|Glcci1|170772|glucocorticoid induced transcript 1
mm9_v1_chr15_-_98701613_98701613	0.106946	UGCAUUG	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chr11_-_68200284_68200327	0.0992882	UGCAUUG	NM_008744|Ntn1|18208|netrin 1
mm9_v1_chr10_-_13194201_13194201	0.0971723	UGCAUUG	BC012871|Phactr2|215789|phosphatase and actin regulator 2	NM_001195065|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr17_-_10512217_10512250	0.0803778	UGCAUUG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr8_-_36028698_36028768	0.0774866	UGCAUUG	BC057370|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	AK080913|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	NM_175091|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm9_v1_chr15_+_100766701_100766755	0.0451265	UGCAUUG	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr1_-_25886551_25886551	0.038907	UGCAUUG	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr1_+_39957733_39957796	0.0369153	UGCAUUG	NM_008696|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr5_+_34916343_34916517	0.0177746	UGCAUUG	NM_001024458|Add1|11518|adducin 1 (alpha)	NM_001102444|Add1|11518|adducin 1 (alpha)	NM_013457|Add1|11518|adducin 1 (alpha)	AF096839|Add1|11518|adducin 1 (alpha)	AK079960|Add1|11518|adducin 1 (alpha)	AK054558|Add1|11518|adducin 1 (alpha)
mm9_v1_chrX_+_38754480_38754557	0.00861749	UGCAUUG	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr10_+_127814144_127814228	0.0069403	UGCAUUG	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr9_-_42280256_42280323	0.00382883	UGCAUUG	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr2_+_138082301_138082378	0.00202028	UGCAUUG	NM_001025431|Btbd3|228662|BTB (POZ) domain containing 3	AK052530|Btbd3|228662|BTB (POZ) domain containing 3	AK161924|Btbd3|228662|BTB (POZ) domain containing 3
