mm9_v1_chr3_+_5218545_5218658	5.43878	UUGUUCG	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr4_-_109960078_109960115	3.79465	UUGUUCG	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr14_-_104867215_104867215	2.73189	UUGUUCG	AY706205|Pou4f1|18996|POU domain, class 4, transcription factor 1	NM_011143|Pou4f1|18996|POU domain, class 4, transcription factor 1
mm9_v1_chr1_-_157264398_157264577	2.48842	UUGUUCG	AK147403|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	BC153872|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF114753|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	BC075721|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AK141660|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	NM_011273|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1
mm9_v1_chr9_-_99776467_99776588	2.27723	UUGUUCG	BC069948|Sox14|20669|SRY-box containing gene 14	AK138208|Sox14|20669|SRY-box containing gene 14	BC055767|Sox14|20669|SRY-box containing gene 14	BC083360|Sox14|20669|SRY-box containing gene 14	BC100555|Sox14|20669|SRY-box containing gene 14	NM_011440|Sox14|20669|SRY-box containing gene 14
mm9_v1_chr6_+_30688050_30688066	2.26979	UUGUUCG	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr1_-_176851949_176851953	2.2628	UUGUUCG	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr5_+_53981453_53981812	2.21616	UUGUUCG	NM_009035|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	S63463|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK152746|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	X17459|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK028363|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK132145|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK139087|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	NM_001080927|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region
mm9_v1_chr15_-_56526052_56526100	2.07314	UUGUUCG	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr9_+_47338431_47338446	1.99235	UUGUUCG	AB052293|Cadm1|54725|cell adhesion molecule 1	AB377192|Cadm1|54725|cell adhesion molecule 1	AK053839|Cadm1|54725|cell adhesion molecule 1	NM_001025600|Cadm1|54725|cell adhesion molecule 1	NM_018770|Cadm1|54725|cell adhesion molecule 1	NM_207675|Cadm1|54725|cell adhesion molecule 1	NM_207676|Cadm1|54725|cell adhesion molecule 1	AF539424|Cadm1|54725|cell adhesion molecule 1	BC095986|Cadm1|54725|cell adhesion molecule 1	BC069937|Cadm1|54725|cell adhesion molecule 1	BC057125|Cadm1|54725|cell adhesion molecule 1
mm9_v1_chr4_-_91042997_91043190	1.98556	UUGUUCG	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chrX_+_97972559_97972657	1.87736	UUGUUCG	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr19_-_19185685_19185685	1.85129	UUGUUCG	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr4_-_91066674_91066674	1.78579	UUGUUCG	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr19_+_29326204_29326359	1.78239	UUGUUCG	NM_001048177|Jak2|16452|Janus kinase 2	NM_008413|Jak2|16452|Janus kinase 2	AK087255|Jak2|16452|Janus kinase 2
mm9_v1_chr14_+_67852128_67852128	1.77644	UUGUUCG	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr9_-_8004559_8004652	1.73628	UUGUUCG	BC094313|Yap1|22601|yes-associated protein 1	BC014733|Yap1|22601|yes-associated protein 1	X80508|Yap1|22601|yes-associated protein 1	AK157234|Yap1|22601|yes-associated protein 1	NM_001171147|Yap1|22601|yes-associated protein 1	NM_009534|Yap1|22601|yes-associated protein 1
mm9_v1_chr4_+_43071852_43071944	1.73263	UUGUUCG	AK161056|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_001081413|Unc13b|22249|unc-13 homolog B (C. elegans)	BC157967|Unc13b|22249|unc-13 homolog B (C. elegans)	BC158025|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_021468|Unc13b|22249|unc-13 homolog B (C. elegans)
mm9_v1_chr14_-_118636251_118636251	1.67877	UUGUUCG	NM_177753|Sox21|223227|SRY-box containing gene 21
mm9_v1_chr2_+_160471623_160471632	1.67194	UUGUUCG	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr13_-_76081244_76081314	1.63244	UUGUUCG	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr14_-_104243379_104243389	1.58688	UUGUUCG	AK083415|Ednrb|13618|endothelin receptor type B	NM_001136061|Ednrb|13618|endothelin receptor type B
mm9_v1_chr2_-_24775083_24775154	1.48767	UUGUUCG	AK054555|Ehmt1|77683|euchromatic histone methyltransferase 1	AK052174|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001012518|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109686|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109687|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_172545|Ehmt1|77683|euchromatic histone methyltransferase 1	AK084994|Ehmt1|77683|euchromatic histone methyltransferase 1	AK043898|Ehmt1|77683|euchromatic histone methyltransferase 1	AK082062|Ehmt1|77683|euchromatic histone methyltransferase 1	AB205007|Ehmt1|77683|euchromatic histone methyltransferase 1
mm9_v1_chr13_-_104124527_104124573	1.44023	UUGUUCG	AK081750|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK040801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK044801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK090136|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK046702|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK077719|Mast4|328329|microtubule associated serine/threonine kinase family member 4	NM_175171|Mast4|328329|microtubule associated serine/threonine kinase family member 4
mm9_v1_chr11_-_63735652_63735808	1.3632	UUGUUCG	BC116733|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	BC116743|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AF168992|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK171996|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172015|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172271|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	NM_018805|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK085242|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
mm9_v1_chr18_-_75120759_75120936	1.28965	UUGUUCG	BC020991|Lipg|16891|lipase, endothelial	AF118768|Lipg|16891|lipase, endothelial	AK090224|Lipg|16891|lipase, endothelial	AK152430|Lipg|16891|lipase, endothelial	AK152161|Lipg|16891|lipase, endothelial	AK153541|Lipg|16891|lipase, endothelial	AK152872|Lipg|16891|lipase, endothelial	AK172101|Lipg|16891|lipase, endothelial	NM_010720|Lipg|16891|lipase, endothelial
mm9_v1_chrX_+_103222548_103222685	1.27972	UUGUUCG	AK017506|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK033254|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_001109757|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_009726|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK155643|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK171563|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK172209|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U03434|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U71091|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	BC141395|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide
mm9_v1_chr4_+_148178500_148178594	1.25846	UUGUUCG	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr1_+_53353919_53353984	1.25678	UUGUUCG	NM_145517|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK050385|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK052927|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK077562|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC023695|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC025572|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC012315|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr19_+_59335367_59335452	1.23788	UUGUUCG	NM_172523|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK035644|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK033871|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK041274|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK034368|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	BC078449|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2
mm9_v1_chr11_+_103635438_103635563	1.21279	UUGUUCG	AK132516|Wnt3|22415|wingless-related MMTV integration site 3	NM_009521|Wnt3|22415|wingless-related MMTV integration site 3	M32502|Wnt3|22415|wingless-related MMTV integration site 3	BC152305|Wnt3|22415|wingless-related MMTV integration site 3	BC152537|Wnt3|22415|wingless-related MMTV integration site 3	BC152304|Wnt3|22415|wingless-related MMTV integration site 3	AK141154|Wnt3|22415|wingless-related MMTV integration site 3	BC141271|Wnt3|22415|wingless-related MMTV integration site 3	BC141274|Wnt3|22415|wingless-related MMTV integration site 3
mm9_v1_chr12_-_60112987_60113003	1.20083	UUGUUCG	BC034610|Sec23a|20334|SEC23A (S. cerevisiae)	NM_009147|Sec23a|20334|SEC23A (S. cerevisiae)
mm9_v1_chr18_-_46372017_46372260	1.17159	UUGUUCG	AY251389|Trim36|28105|tripartite motif-containing 36	AB103063|Trim36|28105|tripartite motif-containing 36	BC058106|Trim36|28105|tripartite motif-containing 36	NM_178872|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr13_-_40829082_40829191	1.16985	UUGUUCG	AB221578|Tcfap2a|21418|transcription factor AP-2, alpha	U17286|Tcfap2a|21418|transcription factor AP-2, alpha	AK145772|Tcfap2a|21418|transcription factor AP-2, alpha	X74216|Tcfap2a|21418|transcription factor AP-2, alpha	BC007471|Tcfap2a|21418|transcription factor AP-2, alpha	U17285|Tcfap2a|21418|transcription factor AP-2, alpha	NM_011547|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr2_+_68699498_68699613	1.16919	UUGUUCG	AK081354|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK135798|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK151848|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK152417|Lass6|241447|LAG1 homolog, ceramide synthase 6	BC057629|Lass6|241447|LAG1 homolog, ceramide synthase 6	AK028849|Lass6|241447|LAG1 homolog, ceramide synthase 6	NM_172856|Lass6|241447|LAG1 homolog, ceramide synthase 6
mm9_v1_chr15_-_79272478_79272599	1.14636	UUGUUCG	NM_013767|Csnk1e|27373|casein kinase 1, epsilon
mm9_v1_chr17_-_24833089_24833122	1.07758	UUGUUCG	BC023941|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	AK146579|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	NM_023040|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)
mm9_v1_chr7_-_128125714_128125825	1.06724	UUGUUCG	BC117530|Cdr2|12585|cerebellar degeneration-related 2	BC118511|Cdr2|12585|cerebellar degeneration-related 2	AK171706|Cdr2|12585|cerebellar degeneration-related 2	U88588|Cdr2|12585|cerebellar degeneration-related 2	AK157902|Cdr2|12585|cerebellar degeneration-related 2	AK148057|Cdr2|12585|cerebellar degeneration-related 2	NM_007672|Cdr2|12585|cerebellar degeneration-related 2
mm9_v1_chr2_+_28980511_28980658	1.04146	UUGUUCG	AK044730|Setx|269254|senataxin	NM_198033|Setx|269254|senataxin
mm9_v1_chr15_+_102236709_102236810	0.996196	UUGUUCG	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr10_-_126971614_126971641	0.992529	UUGUUCG	AK004130|Nxph4|104080|neurexophilin 4	NM_183297|Nxph4|104080|neurexophilin 4
mm9_v1_chr2_+_37631768_37631768	0.964957	UUGUUCG	NM_001163566|Crb2|241324|crumbs homolog 2 (Drosophila)
mm9_v1_chr5_+_108494692_108494781	0.963075	UUGUUCG	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chrX_+_104115963_104116162	0.950927	UUGUUCG	NM_175271|Lpar4|78134|lysophosphatidic acid receptor 4	BC052178|Lpar4|78134|lysophosphatidic acid receptor 4	AK051709|Lpar4|78134|lysophosphatidic acid receptor 4	AK019967|Lpar4|78134|lysophosphatidic acid receptor 4	AK045289|Lpar4|78134|lysophosphatidic acid receptor 4	BC069178|Lpar4|78134|lysophosphatidic acid receptor 4	BC138893|Lpar4|78134|lysophosphatidic acid receptor 4	BC138894|Lpar4|78134|lysophosphatidic acid receptor 4
mm9_v1_chr11_-_89163840_89163872	0.941364	UUGUUCG	AK146488|Nog|18121|noggin	NM_008711|Nog|18121|noggin
mm9_v1_chr5_-_24414236_24414326	0.937524	UUGUUCG	AY348864|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	AK165834|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	AK010703|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_001170555|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_001170556|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr2_+_61642509_61642690	0.932951	UUGUUCG	BC052737|Tbr1|21375|T-box brain gene 1	NM_009322|Tbr1|21375|T-box brain gene 1	AK158835|Tbr1|21375|T-box brain gene 1	BC058399|Tbr1|21375|T-box brain gene 1	U49251|Tbr1|21375|T-box brain gene 1
mm9_v1_chr1_-_183950050_183950110	0.925384	UUGUUCG	NM_001083120|Enah|13800|enabled homolog (Drosophila)	NM_001083121|Enah|13800|enabled homolog (Drosophila)	NM_008680|Enah|13800|enabled homolog (Drosophila)	NM_010135|Enah|13800|enabled homolog (Drosophila)
mm9_v1_chr7_-_135883942_135884024	0.9249	UUGUUCG	BC038342|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein	NM_145955|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein	BC025641|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein	AK083385|Mcmbp|210711|MCM (minichromosome maintenance deficient) binding protein
mm9_v1_chr13_-_104968472_104968556	0.911091	UUGUUCG	BC021756|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK084373|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK013956|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK167749|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK012141|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK010346|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK163342|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	AK149832|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_001093759|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_001093760|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene	NM_025879|2410002O22Rik|66975|RIKEN cDNA 2410002O22 gene
mm9_v1_chr4_-_109959366_109959438	0.908933	UUGUUCG	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chrX_-_53851046_53851096	0.880535	UUGUUCG	EU069461|Mmgt1|236792|membrane magnesium transporter 1	AK049689|Mmgt1|236792|membrane magnesium transporter 1	AK036253|Mmgt1|236792|membrane magnesium transporter 1	NM_146234|Mmgt1|236792|membrane magnesium transporter 1
mm9_v1_chr6_-_30643681_30643723	0.858899	UUGUUCG	BC031892|Tsga14|83922|testis specific gene A14	NM_031998|Tsga14|83922|testis specific gene A14	AK161461|Tsga14|83922|testis specific gene A14	AK166974|Tsga14|83922|testis specific gene A14	AK019270|Tsga14|83922|testis specific gene A14	AK132495|Tsga14|83922|testis specific gene A14	AJ278891|Tsga14|83922|testis specific gene A14	AK006059|Tsga14|83922|testis specific gene A14	AK170213|Tsga14|83922|testis specific gene A14
mm9_v1_chr6_+_83276009_83276097	0.854314	UUGUUCG	AK028416|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK163300|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK172205|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	NM_145571|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK167515|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK170691|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	BC009149|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK158228|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK028695|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	BC033463|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)
mm9_v1_chr18_+_42435006_42435038	0.818114	UUGUUCG	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chrX_+_50265390_50265552	0.798718	UUGUUCG	AK157045|Phf6|70998|PHD finger protein 6	AK012211|Phf6|70998|PHD finger protein 6	AK077803|Phf6|70998|PHD finger protein 6	AK163345|Phf6|70998|PHD finger protein 6	BC043127|Phf6|70998|PHD finger protein 6	NM_027642|Phf6|70998|PHD finger protein 6	AK141804|Phf6|70998|PHD finger protein 6	BC055330|Phf6|70998|PHD finger protein 6	AK122560|Phf6|70998|PHD finger protein 6	AK028498|Phf6|70998|PHD finger protein 6	AK038320|Phf6|70998|PHD finger protein 6	BC057374|Phf6|70998|PHD finger protein 6	AK192342|Phf6|70998|PHD finger protein 6	AK213676|Phf6|70998|PHD finger protein 6
mm9_v1_chr3_+_32716447_32716547	0.793181	UUGUUCG	AK135141|Usp13|72607|ubiquitin specific peptidase 13 (isopeptidase T-3)	BC090999|Usp13|72607|ubiquitin specific peptidase 13 (isopeptidase T-3)	NM_001013024|Usp13|72607|ubiquitin specific peptidase 13 (isopeptidase T-3)
mm9_v1_chr5_+_67651890_67652024	0.753253	UUGUUCG	AK012413|Tmem33|67878|transmembrane protein 33	NM_028975|Tmem33|67878|transmembrane protein 33	NM_030108|Tmem33|67878|transmembrane protein 33	AK032555|Tmem33|67878|transmembrane protein 33	AK005493|Tmem33|67878|transmembrane protein 33	AK007750|Tmem33|67878|transmembrane protein 33	AK017281|Tmem33|67878|transmembrane protein 33	AK153441|Tmem33|67878|transmembrane protein 33	AK007607|Tmem33|67878|transmembrane protein 33	BC005562|Tmem33|67878|transmembrane protein 33	AK165369|Tmem33|67878|transmembrane protein 33
mm9_v1_chr9_-_62828677_62828715	0.738367	UUGUUCG	AF077950|Pias1|56469|protein inhibitor of activated STAT 1	BC051417|Pias1|56469|protein inhibitor of activated STAT 1	AK075708|Pias1|56469|protein inhibitor of activated STAT 1	NM_019663|Pias1|56469|protein inhibitor of activated STAT 1	AK153871|Pias1|56469|protein inhibitor of activated STAT 1
mm9_v1_chr18_+_23910833_23910892	0.732875	UUGUUCG	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr17_-_80606644_80606647	0.721665	UUGUUCG	AK034952|Srsf7|225027|serine/arginine-rich splicing factor 7	AK137795|Srsf7|225027|serine/arginine-rich splicing factor 7	AK168355|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_001195485|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_001195486|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_001195487|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_146083|Srsf7|225027|serine/arginine-rich splicing factor 7
mm9_v1_chr2_+_28496752_28496773	0.660939	UUGUUCG	AK030318|Tsc1|64930|tuberous sclerosis 1	AJ271912|Tsc1|64930|tuberous sclerosis 1	AK147428|Tsc1|64930|tuberous sclerosis 1	NM_022887|Tsc1|64930|tuberous sclerosis 1	AK083363|Tsc1|64930|tuberous sclerosis 1	AK078140|Tsc1|64930|tuberous sclerosis 1	AK154416|Tsc1|64930|tuberous sclerosis 1
mm9_v1_chr11_-_78510874_78510941	0.627339	UUGUUCG	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr16_-_22163264_22163371	0.624519	UUGUUCG	NM_183029|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2
mm9_v1_chr7_+_73254341_73254400	0.624264	UUGUUCG	AK129255|Chsy1|269941|chondroitin sulfate synthase 1	BC128567|Chsy1|269941|chondroitin sulfate synthase 1	BC153826|Chsy1|269941|chondroitin sulfate synthase 1	BC153827|Chsy1|269941|chondroitin sulfate synthase 1	NM_001081163|Chsy1|269941|chondroitin sulfate synthase 1
mm9_v1_chr11_+_77499638_77499656	0.622254	UUGUUCG	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr3_-_106350628_106350700	0.620193	UUGUUCG	BC021753|Cept1|99712|choline/ethanolaminephosphotransferase 1	BC023783|Cept1|99712|choline/ethanolaminephosphotransferase 1	AK037116|Cept1|99712|choline/ethanolaminephosphotransferase 1	NM_133869|Cept1|99712|choline/ethanolaminephosphotransferase 1
mm9_v1_chr6_+_67216948_67217032	0.601446	UUGUUCG	AK004678|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113564|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113565|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113566|Serbp1|66870|serpine1 mRNA binding protein 1	NM_025814|Serbp1|66870|serpine1 mRNA binding protein 1	AK010860|Serbp1|66870|serpine1 mRNA binding protein 1	AK144764|Serbp1|66870|serpine1 mRNA binding protein 1	AK158095|Serbp1|66870|serpine1 mRNA binding protein 1	AK010851|Serbp1|66870|serpine1 mRNA binding protein 1	AK011051|Serbp1|66870|serpine1 mRNA binding protein 1	AK149505|Serbp1|66870|serpine1 mRNA binding protein 1	AK012390|Serbp1|66870|serpine1 mRNA binding protein 1	AK088278|Serbp1|66870|serpine1 mRNA binding protein 1	AK131990|Serbp1|66870|serpine1 mRNA binding protein 1	AK135473|Serbp1|66870|serpine1 mRNA binding protein 1	AK139670|Serbp1|66870|serpine1 mRNA binding protein 1	AK146418|Serbp1|66870|serpine1 mRNA binding protein 1	AK045190|Serbp1|66870|serpine1 mRNA binding protein 1	BC006030|Serbp1|66870|serpine1 mRNA binding protein 1	BC013665|Serbp1|66870|serpine1 mRNA binding protein 1	BC030502|Serbp1|66870|serpine1 mRNA binding protein 1
mm9_v1_chr8_+_109674517_109674597	0.600331	UUGUUCG	BC054749|Cyb5b|66427|cytochrome b5 type B	BC062980|Cyb5b|66427|cytochrome b5 type B	AK003333|Cyb5b|66427|cytochrome b5 type B	AK088970|Cyb5b|66427|cytochrome b5 type B	AK165543|Cyb5b|66427|cytochrome b5 type B	AK052810|Cyb5b|66427|cytochrome b5 type B	NM_025558|Cyb5b|66427|cytochrome b5 type B	AK019263|Cyb5b|66427|cytochrome b5 type B	BC048147|Cyb5b|66427|cytochrome b5 type B	AK003815|Cyb5b|66427|cytochrome b5 type B	AK168422|Cyb5b|66427|cytochrome b5 type B	AK166544|Cyb5b|66427|cytochrome b5 type B	BC046810|Cyb5b|66427|cytochrome b5 type B	BC046479|Cyb5b|66427|cytochrome b5 type B	BC058812|Cyb5b|66427|cytochrome b5 type B
mm9_v1_chr3_+_108087046_108087050	0.595394	UUGUUCG	BC056343|Sort1|20661|sortilin 1	NM_019972|Sort1|20661|sortilin 1
mm9_v1_chr18_-_58369579_58369752	0.583825	UUGUUCG	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chr11_-_106054817_106054916	0.570554	UUGUUCG	BC058517|Strada|72149|STE20-related kinase adaptor alpha	AK031715|Strada|72149|STE20-related kinase adaptor alpha	AK011451|Strada|72149|STE20-related kinase adaptor alpha	NM_028126|Strada|72149|STE20-related kinase adaptor alpha	AY341872|Strada|72149|STE20-related kinase adaptor alpha	AY341878|Strada|72149|STE20-related kinase adaptor alpha	AK031290|Strada|72149|STE20-related kinase adaptor alpha	AK138358|Strada|72149|STE20-related kinase adaptor alpha
mm9_v1_chr19_+_18787654_18787754	0.567682	UUGUUCG	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chr18_+_44540137_44540241	0.566231	UUGUUCG	AK153105|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	NM_027490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK008609|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK017809|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK166560|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK010490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK152160|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153264|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153310|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)
mm9_v1_chr9_-_21856445_21856470	0.565689	UUGUUCG	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr6_-_86619001_86619180	0.560678	UUGUUCG	CT010233|Mxd1|17119|MAX dimerization protein 1	L38926|Mxd1|17119|MAX dimerization protein 1	X83106|Mxd1|17119|MAX dimerization protein 1	BC034860|Mxd1|17119|MAX dimerization protein 1	U20614|Mxd1|17119|MAX dimerization protein 1	AK036504|Mxd1|17119|MAX dimerization protein 1	AK151882|Mxd1|17119|MAX dimerization protein 1	AK153303|Mxd1|17119|MAX dimerization protein 1	AK151114|Mxd1|17119|MAX dimerization protein 1	AK151014|Mxd1|17119|MAX dimerization protein 1	AK151305|Mxd1|17119|MAX dimerization protein 1	NM_010751|Mxd1|17119|MAX dimerization protein 1
mm9_v1_chr7_+_66484094_66484221	0.53574	UUGUUCG	AK029133|Ube3a|22215|ubiquitin protein ligase E3A	NM_173010|Ube3a|22215|ubiquitin protein ligase E3A	NM_001033962|Ube3a|22215|ubiquitin protein ligase E3A	NM_011668|Ube3a|22215|ubiquitin protein ligase E3A	BC131658|Ube3a|22215|ubiquitin protein ligase E3A	BC131659|Ube3a|22215|ubiquitin protein ligase E3A	AK083795|Ube3a|22215|ubiquitin protein ligase E3A	AK220549|Ube3a|22215|ubiquitin protein ligase E3A
mm9_v1_chr19_-_4906607_4906628	0.51226	UUGUUCG	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr6_-_13627853_13628000	0.506319	UUGUUCG	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr1_-_64784316_64784324	0.506297	UUGUUCG	AK039402|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_001042659|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_022721|Fzd5|14367|frizzled homolog 5 (Drosophila)	AK030111|Fzd5|14367|frizzled homolog 5 (Drosophila)
mm9_v1_chr2_-_52280367_52280416	0.504381	UUGUUCG	BC100307|Arl5a|75423|ADP-ribosylation factor-like 5A	AK147525|Arl5a|75423|ADP-ribosylation factor-like 5A	BC048170|Arl5a|75423|ADP-ribosylation factor-like 5A	BC059931|Arl5a|75423|ADP-ribosylation factor-like 5A	NM_182994|Arl5a|75423|ADP-ribosylation factor-like 5A
mm9_v1_chr13_+_112476313_112476385	0.501045	UUGUUCG	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr14_+_47502637_47502773	0.496827	UUGUUCG	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr1_-_127808790_127808807	0.494481	UUGUUCG	AB041649|Lypd1|72585|Ly6/Plaur domain containing 1	AK045592|Lypd1|72585|Ly6/Plaur domain containing 1	NM_145100|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr2_-_38781939_38781980	0.48815	UUGUUCG	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr4_+_133140278_133140337	0.487768	UUGUUCG	NM_133884|Gpn2|100210|GPN-loop GTPase 2	BC018407|Gpn2|100210|GPN-loop GTPase 2
mm9_v1_chr19_-_29880498_29880498	0.480953	UUGUUCG	AK051413|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene	NM_172836|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene
mm9_v1_chr2_-_152223710_152223930	0.480838	UUGUUCG	BC067019|Sox12|20667|SRY-box containing gene 12	NM_011438|Sox12|20667|SRY-box containing gene 12
mm9_v1_chr14_+_14845004_14845173	0.473329	UUGUUCG	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr13_-_40825789_40825811	0.471972	UUGUUCG	U17287|Tcfap2a|21418|transcription factor AP-2, alpha	AK053704|Tcfap2a|21418|transcription factor AP-2, alpha	NM_001122948|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr8_-_93837120_93837168	0.465473	UUGUUCG	AK029911|Rpgrip1l|244585|Rpgrip1-like	NM_173431|Rpgrip1l|244585|Rpgrip1-like	AJ344253|Rpgrip1l|244585|Rpgrip1-like
mm9_v1_chr7_+_52151432_52151509	0.450642	UUGUUCG	NM_027376|Fuz|70300|fuzzy homolog (Drosophila)	AK134650|Fuz|70300|fuzzy homolog (Drosophila)	AK168939|Fuz|70300|fuzzy homolog (Drosophila)	AK045745|Fuz|70300|fuzzy homolog (Drosophila)	AK033247|Fuz|70300|fuzzy homolog (Drosophila)	BC045601|Fuz|70300|fuzzy homolog (Drosophila)	AK011195|Fuz|70300|fuzzy homolog (Drosophila)
mm9_v1_chr10_-_128258639_128258702	0.448269	UUGUUCG	AK002824|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK002583|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK013455|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	BC002146|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	NM_024180|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)
mm9_v1_chr12_+_36883692_36883781	0.436148	UUGUUCG	NM_146033|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	AK077556|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	BC012275|Ankmy2|217473|ankyrin repeat and MYND domain containing 2	BC024959|Ankmy2|217473|ankyrin repeat and MYND domain containing 2
mm9_v1_chr13_-_64376186_64376295	0.431877	UUGUUCG	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr9_+_54711492_54711604	0.431779	UUGUUCG	NM_022655|Ireb2|64602|iron responsive element binding protein 2	BC044665|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr9_+_122714664_122714720	0.427959	UUGUUCG	NM_001013405|D9Ertd402e|382117|DNA segment, Chr 9, ERATO Doi 402, expressed	BC080690|D9Ertd402e|382117|DNA segment, Chr 9, ERATO Doi 402, expressed
mm9_v1_chr19_+_53384990_53385011	0.426227	UUGUUCG	NM_001008542|Mxi1|17859|Max interacting protein 1	AK154538|Mxi1|17859|Max interacting protein 1	BC064453|Mxi1|17859|Max interacting protein 1
mm9_v1_chr11_-_102046532_102046628	0.424463	UUGUUCG	AK081685|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK011126|Lsm12|268490|LSM12 homolog (S. cerevisiae)	BC027784|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK132889|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK075668|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK151118|Lsm12|268490|LSM12 homolog (S. cerevisiae)	NM_172947|Lsm12|268490|LSM12 homolog (S. cerevisiae)
mm9_v1_chr10_+_128184908_128185017	0.416982	UUGUUCG	NM_030100|Wibg|78428|within bgcn homolog (Drosophila)	AK020702|Wibg|78428|within bgcn homolog (Drosophila)	AJ459407|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr6_-_91465788_91465881	0.416598	UUGUUCG	U27398|Xpc|22591|xeroderma pigmentosum, complementation group C	AK170975|Xpc|22591|xeroderma pigmentosum, complementation group C	AK166981|Xpc|22591|xeroderma pigmentosum, complementation group C	AB071144|Xpc|22591|xeroderma pigmentosum, complementation group C	AK028595|Xpc|22591|xeroderma pigmentosum, complementation group C	AK004713|Xpc|22591|xeroderma pigmentosum, complementation group C	BC052725|Xpc|22591|xeroderma pigmentosum, complementation group C	NM_009531|Xpc|22591|xeroderma pigmentosum, complementation group C
mm9_v1_chr7_+_119822831_119822885	0.416189	UUGUUCG	S74227|Tead1|21676|TEA domain family member 1	AK140307|Tead1|21676|TEA domain family member 1	NM_001166584|Tead1|21676|TEA domain family member 1	NM_009346|Tead1|21676|TEA domain family member 1	AK148375|Tead1|21676|TEA domain family member 1
mm9_v1_chr2_-_12932442_12932490	0.414085	UUGUUCG	EU399230|C1ql3|227580|C1q-like 3	BC024634|C1ql3|227580|C1q-like 3	NM_153155|C1ql3|227580|C1q-like 3
mm9_v1_chr10_+_24315247_24315401	0.411937	UUGUUCG	NM_010217|Ctgf|14219|connective tissue growth factor	BC006783|Ctgf|14219|connective tissue growth factor	M80263|Ctgf|14219|connective tissue growth factor	M70642|Ctgf|14219|connective tissue growth factor
mm9_v1_chr4_+_53644336_53644426	0.404862	UUGUUCG	NM_001195284|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	NM_176966|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	AK140020|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	AK038893|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	BC130265|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like
mm9_v1_chr15_+_97998090_97998244	0.40139	UUGUUCG	AK080988|AI836003|239650|expressed sequence AI836003	NM_177716|AI836003|239650|expressed sequence AI836003
mm9_v1_chr17_-_36408313_36408377	0.39817	UUGUUCG	AK220298|Trim39|79263|tripartite motif-containing 39	AK145861|Trim39|79263|tripartite motif-containing 39	AK053507|Trim39|79263|tripartite motif-containing 39	NM_178281|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr7_-_144506112_144506127	0.396548	UUGUUCG	AK220542|Ebf3|13593|early B-cell factor 3	NM_001113414|Ebf3|13593|early B-cell factor 3	NM_001113415|Ebf3|13593|early B-cell factor 3	NM_010096|Ebf3|13593|early B-cell factor 3
mm9_v1_chr14_-_118531951_118531992	0.384296	UUGUUCG	BC021419|Tgds|76355|TDP-glucose 4,6-dehydratase	AK165685|Tgds|76355|TDP-glucose 4,6-dehydratase	AK154341|Tgds|76355|TDP-glucose 4,6-dehydratase	AK011439|Tgds|76355|TDP-glucose 4,6-dehydratase	AK165955|Tgds|76355|TDP-glucose 4,6-dehydratase	AK011555|Tgds|76355|TDP-glucose 4,6-dehydratase	NM_029578|Tgds|76355|TDP-glucose 4,6-dehydratase
mm9_v1_chr4_-_123427465_123427587	0.37925	UUGUUCG	AK006378|Akirin1|68050|akirin 1	AK078055|Akirin1|68050|akirin 1	AB041594|Akirin1|68050|akirin 1	AK160087|Akirin1|68050|akirin 1	AK168201|Akirin1|68050|akirin 1	AK168214|Akirin1|68050|akirin 1	AK146017|Akirin1|68050|akirin 1	AK168530|Akirin1|68050|akirin 1	AK159632|Akirin1|68050|akirin 1	NM_023423|Akirin1|68050|akirin 1	BC003291|Akirin1|68050|akirin 1
mm9_v1_chr13_+_9275741_9275783	0.378702	UUGUUCG	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr2_+_4802609_4802674	0.37081	UUGUUCG	BC066037|Sephs1|109079|selenophosphate synthetase 1	NM_175400|Sephs1|109079|selenophosphate synthetase 1	BC065165|Sephs1|109079|selenophosphate synthetase 1	AK044971|Sephs1|109079|selenophosphate synthetase 1
mm9_v1_chr11_-_70796471_70796535	0.370146	UUGUUCG	AK010746|C1qbp|12261|complement component 1, q subcomponent binding protein	BC038075|C1qbp|12261|complement component 1, q subcomponent binding protein	AK169764|C1qbp|12261|complement component 1, q subcomponent binding protein	AK011868|C1qbp|12261|complement component 1, q subcomponent binding protein	NM_007573|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr4_-_45543623_45543714	0.370035	UUGUUCG	NM_001033306|Shb|230126|src homology 2 domain-containing transforming protein B
mm9_v1_chr18_-_46358466_46358474	0.361057	UUGUUCG	NM_001170855|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr18_+_23962468_23962588	0.357701	UUGUUCG	NM_153058|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK038562|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK140595|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK040767|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045904|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148954|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046221|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC027056|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC035254|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC025804|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK050527|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148480|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046095|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK088734|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC028987|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045493|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr9_-_71959599_71959699	0.357568	UUGUUCG	M97635|Tcf12|21406|transcription factor 12	BC037097|Tcf12|21406|transcription factor 12	AK143246|Tcf12|21406|transcription factor 12	NM_011544|Tcf12|21406|transcription factor 12	AK169800|Tcf12|21406|transcription factor 12
mm9_v1_chr6_+_141578016_141578059	0.352139	UUGUUCG	AB031959|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2	NM_020495|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2
mm9_v1_chr12_+_21117592_21117662	0.342458	UUGUUCG	AK147622|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC080847|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001004364|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001098168|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001135192|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr1_+_78654399_78654472	0.341737	UUGUUCG	AK161708|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001001981|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)	NM_001033606|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001136222|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_028817|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK012088|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK160839|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK166723|Acsl3|74205|acyl-CoA synthetase long-chain family member 3
mm9_v1_chr5_-_72559220_72559438	0.340757	UUGUUCG	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr11_-_115873976_115874034	0.336823	UUGUUCG	AB027012|Galk1|14635|galactokinase 1	AK168716|Galk1|14635|galactokinase 1	BC050151|Galk1|14635|galactokinase 1	AK045694|Galk1|14635|galactokinase 1	BC016602|Galk1|14635|galactokinase 1	AK010340|Galk1|14635|galactokinase 1	AK011103|Galk1|14635|galactokinase 1	AK088151|Galk1|14635|galactokinase 1	NM_016905|Galk1|14635|galactokinase 1
mm9_v1_chr10_+_68186493_68186584	0.326515	UUGUUCG	AK028283|Tmem26|327766|transmembrane protein 26	NM_177794|Tmem26|327766|transmembrane protein 26	AK084351|Tmem26|327766|transmembrane protein 26	AK143866|Tmem26|327766|transmembrane protein 26	BC117502|Tmem26|327766|transmembrane protein 26	BC117503|Tmem26|327766|transmembrane protein 26
mm9_v1_chr9_+_64808638_64808765	0.322669	UUGUUCG	NM_001077631|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK169772|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK035654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK041578|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK086850|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	BC024913|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK032095|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	NM_175153|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK050654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr15_-_50721552_50721725	0.317363	UUGUUCG	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr5_-_108304062_108304125	0.317273	UUGUUCG	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr1_+_140860285_140860402	0.316998	UUGUUCG	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr8_+_34710049_34710163	0.312875	UUGUUCG	NM_017374|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	BC058582|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm9_v1_chr19_+_37281988_37282110	0.307754	UUGUUCG	AK009364|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164336|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164337|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_027314|March5|69104|membrane-associated ring finger (C3HC4) 5	AK009232|March5|69104|membrane-associated ring finger (C3HC4) 5	AK021403|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr7_-_139791248_139791319	0.306369	UUGUUCG	BC139757|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222444|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222445|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223361|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223362|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223363|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223674|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223675|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	NM_009123|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr2_+_121854287_121854425	0.303115	UUGUUCG	AK148004|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK154934|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK161038|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	NM_144545|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	BC080788|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK147154|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK019219|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J
mm9_v1_chr10_-_112365976_112366087	0.288181	UUGUUCG	AK014824|Atxn7l3b|382423|ataxin 7-like 3B	BC058561|Atxn7l3b|382423|ataxin 7-like 3B	BC047210|Atxn7l3b|382423|ataxin 7-like 3B	BC079579|Atxn7l3b|382423|ataxin 7-like 3B	BC094390|Atxn7l3b|382423|ataxin 7-like 3B	BC030168|Atxn7l3b|382423|ataxin 7-like 3B	AK003631|Atxn7l3b|382423|ataxin 7-like 3B	AK150316|Atxn7l3b|382423|ataxin 7-like 3B	AK135540|Atxn7l3b|382423|ataxin 7-like 3B	AK011696|Atxn7l3b|382423|ataxin 7-like 3B	AK009409|Atxn7l3b|382423|ataxin 7-like 3B	NM_001033474|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr10_+_52137324_52137453	0.286996	UUGUUCG	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr4_-_55545337_55545348	0.285619	UUGUUCG	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr16_+_22009551_22009592	0.285043	UUGUUCG	NM_029457|Senp2|75826|SUMO/sentrin specific peptidase 2	AK031030|Senp2|75826|SUMO/sentrin specific peptidase 2	AK015987|Senp2|75826|SUMO/sentrin specific peptidase 2	BC031652|Senp2|75826|SUMO/sentrin specific peptidase 2	AF368904|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr3_+_53267715_53267853	0.279771	UUGUUCG	AK087909|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK038404|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	NM_173382|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK012908|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK161440|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene
mm9_v1_chr10_+_98569715_98569826	0.275818	UUGUUCG	BC144819|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC145801|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC099926|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK050233|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK090075|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	NM_027740|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK045302|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)
mm9_v1_chr2_-_136213509_136213702	0.274743	UUGUUCG	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chrX_+_130593867_130593899	0.271573	UUGUUCG	AK147438|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	AK088260|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	NM_133196|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2
mm9_v1_chr8_+_28134259_28134401	0.26199	UUGUUCG	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr1_+_138521477_138521641	0.261025	UUGUUCG	NM_001160251|Zfp281|226442|zinc finger protein 281	NM_177643|Zfp281|226442|zinc finger protein 281	BC003243|Zfp281|226442|zinc finger protein 281	BC062153|Zfp281|226442|zinc finger protein 281	AK157189|Zfp281|226442|zinc finger protein 281	AK142218|Zfp281|226442|zinc finger protein 281
mm9_v1_chr8_-_114400574_114400649	0.260721	UUGUUCG	AK018496|Tmem170|66817|transmembrane protein 170	NM_025781|Tmem170|66817|transmembrane protein 170	AK007926|Tmem170|66817|transmembrane protein 170	BC139377|Tmem170|66817|transmembrane protein 170	BC145964|Tmem170|66817|transmembrane protein 170
mm9_v1_chr4_-_84320976_84320992	0.255154	UUGUUCG	AK030323|Bnc2|242509|basonuclin 2	NM_172870|Bnc2|242509|basonuclin 2
mm9_v1_chr5_-_31482504_31482530	0.251104	UUGUUCG	BC043100|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK083585|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	NM_027901|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta
mm9_v1_chr3_-_107957795_107957821	0.2502	UUGUUCG	AK032627|Gpr61|229714|G protein-coupled receptor 61	AK133702|Gpr61|229714|G protein-coupled receptor 61	NM_175470|Gpr61|229714|G protein-coupled receptor 61
mm9_v1_chr10_+_7400978_7401034	0.246669	UUGUUCG	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chr4_-_131700278_131700485	0.245241	UUGUUCG	S66181|Oprd1|18386|opioid receptor, delta 1	L11064|Oprd1|18386|opioid receptor, delta 1	S65335|Oprd1|18386|opioid receptor, delta 1	BC137958|Oprd1|18386|opioid receptor, delta 1	BC137969|Oprd1|18386|opioid receptor, delta 1	L07271|Oprd1|18386|opioid receptor, delta 1	L06322|Oprd1|18386|opioid receptor, delta 1	AK043873|Oprd1|18386|opioid receptor, delta 1	NM_013622|Oprd1|18386|opioid receptor, delta 1
mm9_v1_chr18_+_36720238_36720319	0.243466	UUGUUCG	NM_175375|Ankhd1|108857|ankyrin repeat and KH domain containing 1	AK080941|Ankhd1|108857|ankyrin repeat and KH domain containing 1
mm9_v1_chr15_-_36724292_36724292	0.237047	UUGUUCG	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr11_+_93857338_93857584	0.233007	UUGUUCG	AK161623|Spag9|70834|sperm associated antigen 9	NM_027569|Spag9|70834|sperm associated antigen 9	AF327451|Spag9|70834|sperm associated antigen 9	AB047782|Spag9|70834|sperm associated antigen 9	FJ042496|Spag9|70834|sperm associated antigen 9	AK030165|Spag9|70834|sperm associated antigen 9
mm9_v1_chr15_-_77949709_77949709	0.231903	UUGUUCG	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr8_+_85689250_85689250	0.231521	UUGUUCG	AK049049|Tbc1d9|71310|TBC1 domain family, member 9	NM_001111304|Tbc1d9|71310|TBC1 domain family, member 9	NM_027758|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr2_-_52414072_52414117	0.226359	UUGUUCG	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr10_+_110735734_110735734	0.221375	UUGUUCG	AK004937|Bbs10|71769|Bardet-Biedl syndrome 10 (human)	NM_027914|Bbs10|71769|Bardet-Biedl syndrome 10 (human)
mm9_v1_chr5_-_139821054_139821222	0.22094	UUGUUCG	AK148526|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK007984|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC031792|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_197980|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK002486|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK013260|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK003697|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK013289|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr3_+_122432075_122432112	0.218166	UUGUUCG	AF541937|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	NM_153422|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC119137|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC120486|Pde5a|242202|phosphodiesterase 5A, cGMP-specific
mm9_v1_chr13_+_113450958_113450993	0.214258	UUGUUCG	AK020109|Slc38a9|268706|solute carrier family 38, member 9	BC052361|Slc38a9|268706|solute carrier family 38, member 9	NM_178746|Slc38a9|268706|solute carrier family 38, member 9	AK044735|Slc38a9|268706|solute carrier family 38, member 9	AK043402|Slc38a9|268706|solute carrier family 38, member 9	AK034958|Slc38a9|268706|solute carrier family 38, member 9	AK039821|Slc38a9|268706|solute carrier family 38, member 9
mm9_v1_chr1_-_191511950_191512003	0.204117	UUGUUCG	AK080758|Cenpf|108000|centromere protein F	AK029517|Cenpf|108000|centromere protein F	AK165236|Cenpf|108000|centromere protein F	NM_001081363|Cenpf|108000|centromere protein F
mm9_v1_chr11_+_98902556_98902703	0.197906	UUGUUCG	AK031212|Igfbp4|16010|insulin-like growth factor binding protein 4	AK150229|Igfbp4|16010|insulin-like growth factor binding protein 4	AK165688|Igfbp4|16010|insulin-like growth factor binding protein 4	NM_010517|Igfbp4|16010|insulin-like growth factor binding protein 4	BC019836|Igfbp4|16010|insulin-like growth factor binding protein 4	X81582|Igfbp4|16010|insulin-like growth factor binding protein 4
mm9_v1_chr4_-_125933482_125933589	0.197424	UUGUUCG	BC023677|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	BC023774|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	AK151613|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_001145970|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_144941|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1
mm9_v1_chr18_-_7626805_7626890	0.194374	UUGUUCG	AK033081|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	BC049662|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK012883|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK036956|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK035303|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK050710|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK162694|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK078849|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001081287|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001161620|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK027937|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm9_v1_chr4_-_87452140_87452217	0.193935	UUGUUCG	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr15_+_59205752_59205871	0.192434	UUGUUCG	NM_001164604|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	NM_026746|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK003685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK051277|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	BC009125|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK188685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK211545|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK212165|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)
mm9_v1_chr13_+_107737175_107737270	0.19217	UUGUUCG	NM_025447|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK078401|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	BC019799|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK146188|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK011544|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK007759|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK015145|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK078186|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK161333|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
mm9_v1_chr4_-_87679175_87679310	0.191984	UUGUUCG	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr6_+_140572056_140572226	0.183744	UUGUUCG	NM_001005605|Aebp2|11569|AE binding protein 2
mm9_v1_chr12_-_80397239_80397289	0.180044	UUGUUCG	AK220333|Zfyve26|211978|zinc finger, FYVE domain containing 26	BC141359|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK132344|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK041668|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK135518|Zfyve26|211978|zinc finger, FYVE domain containing 26	NM_001008550|Zfyve26|211978|zinc finger, FYVE domain containing 26
mm9_v1_chr12_-_103995925_103996025	0.17922	UUGUUCG	BC055374|AK010878|100233175|cDNA sequence AK010878	BC014715|AK010878|100233175|cDNA sequence AK010878	AK018995|AK010878|100233175|cDNA sequence AK010878	AK011927|AK010878|100233175|cDNA sequence AK010878	AK006753|AK010878|100233175|cDNA sequence AK010878	AK010878|AK010878|100233175|cDNA sequence AK010878	NM_001142938|AK010878|100233175|cDNA sequence AK010878	NM_001142939|AK010878|100233175|cDNA sequence AK010878
mm9_v1_chr16_+_31422377_31422406	0.178642	UUGUUCG	BC043683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_175177|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr14_+_31832323_31832337	0.173954	UUGUUCG	AK165182|Pbrm1|66923|polybromo 1	NM_001081251|Pbrm1|66923|polybromo 1
mm9_v1_chr19_+_40969176_40969231	0.172967	UUGUUCG	AK087532|E130314M14Rik|449522|RIKEN cDNA E130314M14 gene	AK041506|Zfp518a|72672|zinc finger protein 518A	NM_028319|Zfp518a|72672|zinc finger protein 518A
mm9_v1_chr6_-_28084368_28084420	0.172947	UUGUUCG	BC051384|Grm8|14823|glutamate receptor, metabotropic 8	NM_008174|Grm8|14823|glutamate receptor, metabotropic 8	AK038395|Grm8|14823|glutamate receptor, metabotropic 8
mm9_v1_chr18_+_69505374_69505487	0.171912	UUGUUCG	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chrX_+_97969784_97969833	0.170935	UUGUUCG	NM_001177779|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr12_-_16596573_16596578	0.169416	UUGUUCG	AK030921|Lpin1|14245|lipin 1	NM_001130412|Lpin1|14245|lipin 1	NM_015763|Lpin1|14245|lipin 1	NM_172950|Lpin1|14245|lipin 1
mm9_v1_chrX_-_9046362_9046456	0.163097	UUGUUCG	U43384|Cybb|13058|cytochrome b-245, beta polypeptide	AK033570|Cybb|13058|cytochrome b-245, beta polypeptide	AK053920|Cybb|13058|cytochrome b-245, beta polypeptide	AK079926|Cybb|13058|cytochrome b-245, beta polypeptide	BC071229|Cybb|13058|cytochrome b-245, beta polypeptide	BC042838|Cybb|13058|cytochrome b-245, beta polypeptide	AK152257|Cybb|13058|cytochrome b-245, beta polypeptide	AK153154|Cybb|13058|cytochrome b-245, beta polypeptide	AK153259|Cybb|13058|cytochrome b-245, beta polypeptide	AK171526|Cybb|13058|cytochrome b-245, beta polypeptide	FJ168469|Cybb|13058|cytochrome b-245, beta polypeptide	AK154126|Cybb|13058|cytochrome b-245, beta polypeptide	NM_007807|Cybb|13058|cytochrome b-245, beta polypeptide
mm9_v1_chr7_+_97591287_97591327	0.161357	UUGUUCG	NM_145151|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr15_-_58765248_58765299	0.161105	UUGUUCG	BC061187|Tatdn1|69694|TatD DNase domain containing 1	AK042248|Tatdn1|69694|TatD DNase domain containing 1	NM_175151|Tatdn1|69694|TatD DNase domain containing 1	AK010232|Tatdn1|69694|TatD DNase domain containing 1	AK161972|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr4_-_98484163_98484227	0.160477	UUGUUCG	AK081525|Kank4|242553|KN motif and ankyrin repeat domains 4	BC060737|Kank4|242553|KN motif and ankyrin repeat domains 4	NM_172872|Kank4|242553|KN motif and ankyrin repeat domains 4
mm9_v1_chr7_+_94395160_94395355	0.158181	UUGUUCG	AK169304|Nox4|50490|NADPH oxidase 4	AK087097|Nox4|50490|NADPH oxidase 4	AF261944|Nox4|50490|NADPH oxidase 4	AF276957|Nox4|50490|NADPH oxidase 4	AK050371|Nox4|50490|NADPH oxidase 4	AK085509|Nox4|50490|NADPH oxidase 4	AK149398|Nox4|50490|NADPH oxidase 4	AK149455|Nox4|50490|NADPH oxidase 4	AK149492|Nox4|50490|NADPH oxidase 4	NM_015760|Nox4|50490|NADPH oxidase 4	AK052905|Nox4|50490|NADPH oxidase 4	AB041034|Nox4|50490|NADPH oxidase 4	AB042745|Nox4|50490|NADPH oxidase 4	AF218723|Nox4|50490|NADPH oxidase 4	BC138918|Nox4|50490|NADPH oxidase 4	BC145462|Nox4|50490|NADPH oxidase 4	BC021378|Nox4|50490|NADPH oxidase 4	EU861989|Nox4|50490|NADPH oxidase 4
mm9_v1_chr14_+_8835385_8835479	0.156639	UUGUUCG	NM_025341|Abhd6|66082|abhydrolase domain containing 6	AK090076|Abhd6|66082|abhydrolase domain containing 6	BC027011|Abhd6|66082|abhydrolase domain containing 6	AK168782|Abhd6|66082|abhydrolase domain containing 6	AK002883|Abhd6|66082|abhydrolase domain containing 6	AK011887|Abhd6|66082|abhydrolase domain containing 6	AK076105|Abhd6|66082|abhydrolase domain containing 6
mm9_v1_chr8_+_56040080_56040120	0.156218	UUGUUCG	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr14_+_29831283_29831689	0.147969	UUGUUCG	NM_176920|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK044492|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK138618|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC099587|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC132594|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC145990|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1
mm9_v1_chr11_-_5442157_5442220	0.147307	UUGUUCG	BC034558|Ccdc117|104479|coiled-coil domain containing 117	BC059888|Ccdc117|104479|coiled-coil domain containing 117	BC018601|Ccdc117|104479|coiled-coil domain containing 117	NM_134033|Ccdc117|104479|coiled-coil domain containing 117
mm9_v1_chr7_+_117365214_117365324	0.142973	UUGUUCG	NM_009302|Swap70|20947|SWA-70 protein	AK146773|Swap70|20947|SWA-70 protein	AK045295|Swap70|20947|SWA-70 protein	AK041505|Swap70|20947|SWA-70 protein	AK019882|Swap70|20947|SWA-70 protein	BC065136|Swap70|20947|SWA-70 protein	AK172990|Swap70|20947|SWA-70 protein	AF053974|Swap70|20947|SWA-70 protein
mm9_v1_chr18_+_35721811_35721848	0.142336	UUGUUCG	NM_010771|Matr3|17184|matrin 3
mm9_v1_chr4_-_118966945_118967127	0.141829	UUGUUCG	X57621|Ybx1|22608|Y box protein 1	M62867|Ybx1|22608|Y box protein 1	U33196|Ybx1|22608|Y box protein 1	BC029747|Ybx1|22608|Y box protein 1	BC013620|Ybx1|22608|Y box protein 1	M60419|Ybx1|22608|Y box protein 1	BC061634|Ybx1|22608|Y box protein 1	BC031472|Ybx1|22608|Y box protein 1	BC049977|Ybx1|22608|Y box protein 1	BC013450|Ybx1|22608|Y box protein 1	AK011890|Ybx1|22608|Y box protein 1	AK150821|Ybx1|22608|Y box protein 1	NM_011732|Ybx1|22608|Y box protein 1
mm9_v1_chr14_+_67530044_67530096	0.13824	UUGUUCG	AK043910|Pnma2|239157|paraneoplastic antigen MA2	NM_175498|Pnma2|239157|paraneoplastic antigen MA2	AK220357|Pnma2|239157|paraneoplastic antigen MA2	AK043718|Pnma2|239157|paraneoplastic antigen MA2
mm9_v1_chr7_+_26067197_26067278	0.136921	UUGUUCG	AK147276|Cic|71722|capicua homolog (Drosophila)	NM_001110131|Cic|71722|capicua homolog (Drosophila)	NM_001110132|Cic|71722|capicua homolog (Drosophila)	NM_027882|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr16_+_29209780_29209780	0.134229	UUGUUCG	AK039471|Hrasls|27281|HRAS-like suppressor	NM_013751|Hrasls|27281|HRAS-like suppressor
mm9_v1_chr15_-_100382354_100382438	0.133858	UUGUUCG	AK158682|Tcfcp2|21422|transcription factor CP2	M84809|Tcfcp2|21422|transcription factor CP2	NM_033476|Tcfcp2|21422|transcription factor CP2	BC022131|Tcfcp2|21422|transcription factor CP2	AK146503|Tcfcp2|21422|transcription factor CP2
mm9_v1_chr4_+_24825226_24825304	0.133663	UUGUUCG	NM_026742|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK160341|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK034728|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK019042|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	BC028764|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK003553|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
mm9_v1_chr18_-_10029925_10030160	0.133261	UUGUUCG	AB034633|Usp14|59025|ubiquitin specific peptidase 14	BC050197|Usp14|59025|ubiquitin specific peptidase 14	AK045909|Usp14|59025|ubiquitin specific peptidase 14	BC005571|Usp14|59025|ubiquitin specific peptidase 14	AK029977|Usp14|59025|ubiquitin specific peptidase 14	AK160215|Usp14|59025|ubiquitin specific peptidase 14	AK011322|Usp14|59025|ubiquitin specific peptidase 14	AK172477|Usp14|59025|ubiquitin specific peptidase 14	AK170933|Usp14|59025|ubiquitin specific peptidase 14	NM_001038589|Usp14|59025|ubiquitin specific peptidase 14	NM_021522|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr8_-_8660610_8660772	0.131329	UUGUUCG	U30244|Efnb2|13642|ephrin B2	CT010381|Efnb2|13642|ephrin B2	U16819|Efnb2|13642|ephrin B2	L38847|Efnb2|13642|ephrin B2	NM_010111|Efnb2|13642|ephrin B2
mm9_v1_chr10_+_69559860_69560052	0.127533	UUGUUCG	NM_001111121|Ccdc6|76551|coiled-coil domain containing 6
mm9_v1_chr15_-_100325669_100325697	0.127019	UUGUUCG	BC035295|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	NM_153407|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK146924|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK050864|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK166557|Csrnp2|207785|cysteine-serine-rich nuclear protein 2
mm9_v1_chr7_+_98239230_98239295	0.12527	UUGUUCG	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr5_+_136293975_136293975	0.125155	UUGUUCG	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr17_-_57170896_57170957	0.123129	UUGUUCG	AK077415|Khsrp|16549|KH-type splicing regulatory protein	AK156541|Khsrp|16549|KH-type splicing regulatory protein	NM_010613|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr4_-_110024513_110024515	0.122564	UUGUUCG	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr13_+_25147872_25147872	0.121987	UUGUUCG	BC045136|Dcdc2a|195208|doublecortin domain containing 2a	NM_001195617|Dcdc2a|195208|doublecortin domain containing 2a	NM_177577|Dcdc2a|195208|doublecortin domain containing 2a
mm9_v1_chr5_-_66543123_66543228	0.121546	UUGUUCG	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr3_+_98944990_98945019	0.118942	UUGUUCG	BC089583|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK036902|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK017602|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK042715|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK042964|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	NM_027462|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)	AK033774|Wars2|70560|tryptophanyl tRNA synthetase 2 (mitochondrial)
mm9_v1_chr3_+_80840337_80840337	0.118437	UUGUUCG	AF266467|Pdgfc|54635|platelet-derived growth factor, C polypeptide	NM_019971|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr9_-_44773594_44773682	0.114629	UUGUUCG	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr13_-_46060325_46060353	0.112528	UUGUUCG	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr6_-_119798116_119798193	0.110034	UUGUUCG	AK053824|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK035989|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK048990|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340028|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340029|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_053204|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_178085|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1
mm9_v1_chr6_+_17256369_17256377	0.102919	UUGUUCG	AB029929|Cav1|12389|caveolin 1, caveolae protein	NM_007616|Cav1|12389|caveolin 1, caveolae protein
mm9_v1_chr12_+_59312790_59312790	0.10096	UUGUUCG	AK046464|Sstr1|20605|somatostatin receptor 1	NM_009216|Sstr1|20605|somatostatin receptor 1
mm9_v1_chr6_-_119367498_119367553	0.0969031	UUGUUCG	BC064109|Adipor2|68465|adiponectin receptor 2	AY424291|Adipor2|68465|adiponectin receptor 2	BC024094|Adipor2|68465|adiponectin receptor 2	NM_197985|Adipor2|68465|adiponectin receptor 2	AK046591|Adipor2|68465|adiponectin receptor 2	AK134787|Adipor2|68465|adiponectin receptor 2	AK160534|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr7_+_119902897_119902956	0.0932244	UUGUUCG	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chr15_-_82074765_82074852	0.0929221	UUGUUCG	NM_001080158|Cenpm|66570|centromere protein M
mm9_v1_chr19_+_57435498_57435553	0.092345	UUGUUCG	NM_145505|Fam160b1|226252|family with sequence similarity 160, member B1	AK046518|Fam160b1|226252|family with sequence similarity 160, member B1	AK147386|Fam160b1|226252|family with sequence similarity 160, member B1	AK172373|Fam160b1|226252|family with sequence similarity 160, member B1	AK054539|Fam160b1|226252|family with sequence similarity 160, member B1
mm9_v1_chr13_+_44826121_44826271	0.089744	UUGUUCG	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr7_+_134890288_134890288	0.0893977	UUGUUCG	BC059812|Fbxl19|233902|F-box and leucine-rich repeat protein 19	NM_172748|Fbxl19|233902|F-box and leucine-rich repeat protein 19
mm9_v1_chr3_-_82707880_82707898	0.0890458	UUGUUCG	AF255061|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	AK004953|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	NM_023624|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
mm9_v1_chr9_-_44689356_44689381	0.0870543	UUGUUCG	NM_001081049|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1
mm9_v1_chr4_-_46614726_46614844	0.085464	UUGUUCG	AK045728|Coro2a|107684|coronin, actin binding protein 2A	AK033455|Coro2a|107684|coronin, actin binding protein 2A	AK030971|Coro2a|107684|coronin, actin binding protein 2A	AK154247|Coro2a|107684|coronin, actin binding protein 2A	AK170184|Coro2a|107684|coronin, actin binding protein 2A	AK044060|Coro2a|107684|coronin, actin binding protein 2A	AK152490|Coro2a|107684|coronin, actin binding protein 2A	AK153134|Coro2a|107684|coronin, actin binding protein 2A	AK054394|Coro2a|107684|coronin, actin binding protein 2A	NM_001164804|Coro2a|107684|coronin, actin binding protein 2A
mm9_v1_chr1_-_156573049_156573160	0.0833913	UUGUUCG	NM_009782|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit	BC150750|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm9_v1_chr7_+_31844947_31844953	0.0815948	UUGUUCG	AJ487521|Lgi4|243914|leucine-rich repeat LGI family, member 4	AJ487960|Lgi4|243914|leucine-rich repeat LGI family, member 4	NM_144556|Lgi4|243914|leucine-rich repeat LGI family, member 4
mm9_v1_chr11_+_95275392_95275501	0.0812584	UUGUUCG	NM_025287|Spop|20747|speckle-type POZ protein	AK168546|Spop|20747|speckle-type POZ protein	AK030746|Spop|20747|speckle-type POZ protein	AK132383|Spop|20747|speckle-type POZ protein	BC045205|Spop|20747|speckle-type POZ protein	AK004669|Spop|20747|speckle-type POZ protein	AK159482|Spop|20747|speckle-type POZ protein	AK028201|Spop|20747|speckle-type POZ protein	BC064809|Spop|20747|speckle-type POZ protein	AK168185|Spop|20747|speckle-type POZ protein	AK166581|Spop|20747|speckle-type POZ protein	AK160858|Spop|20747|speckle-type POZ protein
mm9_v1_chr1_-_162281701_162281701	0.0801903	UUGUUCG	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr1_-_74590801_74590859	0.0766783	UUGUUCG	BC139091|Usp37|319651|ubiquitin specific peptidase 37	AK133317|Usp37|319651|ubiquitin specific peptidase 37	AK030013|Usp37|319651|ubiquitin specific peptidase 37	NM_176972|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr12_-_109241423_109241623	0.0749082	UUGUUCG	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr12_+_80398268_80398337	0.0696821	UUGUUCG	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chr14_+_31528352_31528352	0.0659801	UUGUUCG	AK160573|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166531|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr11_+_53164267_53164268	0.0649619	UUGUUCG	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr10_-_85961630_85961659	0.0631953	UUGUUCG	AK043854|Syn3|27204|synapsin III	AK087342|Syn3|27204|synapsin III	NM_001164495|Syn3|27204|synapsin III	NM_013722|Syn3|27204|synapsin III
mm9_v1_chr9_+_100978450_100978485	0.0556509	UUGUUCG	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr2_+_163820920_163821078	0.0498741	UUGUUCG	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr2_+_49921978_49921983	0.0494836	UUGUUCG	NM_177139|Lypd6|320343|LY6/PLAUR domain containing 6	AK053620|Lypd6|320343|LY6/PLAUR domain containing 6
mm9_v1_chr5_-_100588826_100588826	0.0452586	UUGUUCG	BC055321|Tmem150c|231503|transmembrane protein 150C	NM_182841|Tmem150c|231503|transmembrane protein 150C
mm9_v1_chr17_+_86020173_86020181	0.0447098	UUGUUCG	NM_011381|Six3|20473|sine oculis-related homeobox 3 homolog (Drosophila)
mm9_v1_chr10_+_127114119_127114144	0.041041	UUGUUCG	BC030440|Tmem194|210035|transmembrane protein 194	NM_001113211|Tmem194|210035|transmembrane protein 194	NM_173732|Tmem194|210035|transmembrane protein 194	AK129110|Tmem194|210035|transmembrane protein 194	AK090031|Tmem194|210035|transmembrane protein 194
mm9_v1_chrX_+_138662479_138662479	0.0384258	UUGUUCG	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr17_+_28829512_28829512	0.0357093	UUGUUCG	AK151348|Mapk14|26416|mitogen-activated protein kinase 14	AK153025|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168513|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr7_+_6315986_6316086	0.0349342	UUGUUCG	AK134974|Zfp78|330463|zinc finger protein 78	NM_001025163|Zfp78|330463|zinc finger protein 78	NM_001112805|Zfp78|330463|zinc finger protein 78	NM_177888|Zfp78|330463|zinc finger protein 78	AK163133|Zfp78|330463|zinc finger protein 78	BC085322|Zfp78|330463|zinc finger protein 78	AK039658|Zfp78|330463|zinc finger protein 78	AK173164|Zfp78|330463|zinc finger protein 78
mm9_v1_chr11_-_65083442_65083498	0.0337562	UUGUUCG	AF384055|Myocd|214384|myocardin	AY303755|Myocd|214384|myocardin	NM_145136|Myocd|214384|myocardin	NM_146386|Myocd|214384|myocardin	AK142216|Myocd|214384|myocardin
mm9_v1_chr2_+_49474775_49474833	0.0271588	UUGUUCG	BC067051|Kif5c|16574|kinesin family member 5C	NM_008449|Kif5c|16574|kinesin family member 5C
mm9_v1_chr10_+_89207730_89207982	0.0250523	UUGUUCG	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr3_-_148617598_148617598	0.024631	UUGUUCG	NM_001081298|Lphn2|99633|latrophilin 2
mm9_v1_chr2_-_77357674_77357722	0.0241033	UUGUUCG	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr15_+_10106992_10106998	0.0224142	UUGUUCG	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr8_+_128193717_128193790	0.0217906	UUGUUCG	NM_028908|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK042358|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK016632|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK080043|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK220388|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene
mm9_v1_chr5_-_147606370_147606581	0.0196782	UUGUUCG	AK035629|Usp12|22217|ubiquitin specific peptidase 12	AK167153|Usp12|22217|ubiquitin specific peptidase 12	BC068136|Usp12|22217|ubiquitin specific peptidase 12	NM_011669|Usp12|22217|ubiquitin specific peptidase 12	AK006739|Usp12|22217|ubiquitin specific peptidase 12
mm9_v1_chr4_+_98590457_98590500	0.0196561	UUGUUCG	AK080882|Usp1|230484|ubiquitin specific peptidase 1	NM_146144|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr11_+_93905501_93905545	0.0193655	UUGUUCG	AK014060|Spag9|70834|sperm associated antigen 9	AK079365|Spag9|70834|sperm associated antigen 9	NM_001025428|Spag9|70834|sperm associated antigen 9	NM_001025429|Spag9|70834|sperm associated antigen 9	NM_001025430|Spag9|70834|sperm associated antigen 9	AK172961|Spag9|70834|sperm associated antigen 9
mm9_v1_chr11_+_69139759_69139835	0.0160898	UUGUUCG	AK049316|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK083134|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	NM_010599|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK046194|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK031806|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	AK044102|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3	BC017518|Kcnab3|16499|potassium voltage-gated channel, shaker-related subfamily, beta member 3
mm9_v1_chr9_-_114473486_114473486	0.0145394	UUGUUCG	DQ005956|Trim71|636931|tripartite motif-containing 71	NM_001042503|Trim71|636931|tripartite motif-containing 71
mm9_v1_chr4_+_115457560_115457648	0.0126708	UUGUUCG	BC044874|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1	NM_181040|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1
mm9_v1_chr5_+_15440508_15440728	0.0117115	UUGUUCG	AK164580|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110843|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110844|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110845|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110846|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_009784|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK084101|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73483|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73484|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73485|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73486|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73487|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	BC115871|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK052898|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm9_v1_chrX_+_149672587_149672587	0.00836156	UUGUUCG	AK044185|Klf8|245671|Kruppel-like factor 8	NM_173780|Klf8|245671|Kruppel-like factor 8
mm9_v1_chr8_+_82163574_82163602	0.00598017	UUGUUCG	NM_001081164|Otud4|73945|OTU domain containing 4	BC138373|Otud4|73945|OTU domain containing 4	BC145259|Otud4|73945|OTU domain containing 4
mm9_v1_chr2_-_77541328_77541435	0.00516653	UUGUUCG	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr5_+_43624701_43624701	0.00308649	UUGUUCG	NM_001177379|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	NM_175937|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2
mm9_v1_chr1_-_192850002_192850068	0.00274388	UUGUUCG	BC010797|Mfsd7b|226844|major facilitator superfamily domain containing 7B	BC157992|Mfsd7b|226844|major facilitator superfamily domain containing 7B	AK165872|Mfsd7b|226844|major facilitator superfamily domain containing 7B	NM_001081259|Mfsd7b|226844|major facilitator superfamily domain containing 7B
mm9_v1_chrX_+_126284271_126284381	0.000195507	UUGUUCG	AK153986|Diap2|54004|diaphanous homolog 2 (Drosophila)	NM_172493|Diap2|54004|diaphanous homolog 2 (Drosophila)	AK088648|Diap2|54004|diaphanous homolog 2 (Drosophila)	AY312280|Diap2|54004|diaphanous homolog 2 (Drosophila)	BC100759|Diap2|54004|diaphanous homolog 2 (Drosophila)
