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GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
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Results for AACGGAA
Z-value: 0.09
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miRNA associated with seed AACGGAA
| Name | miRBASE accession |
|---|---|
|
hsa-miR-191-5p
|
MIMAT0000440 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AACGGAA
| Promoter | Score | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_+_115623502 Show fit | 0.63 |
ENST00000305124.11
ENST00000393780.3 |
growth associated protein 43 |
|
| chr10_-_79445617 Show fit | 0.48 |
ENST00000372336.4
|
zinc finger CCHC-type containing 24 |
|
| chr7_-_108456378 Show fit | 0.44 |
ENST00000613830.4
ENST00000413765.6 ENST00000379028.8 |
neuronal cell adhesion molecule |
|
| chr17_-_48545077 Show fit | 0.28 |
ENST00000330070.6
|
homeobox B2 |
|
| chr10_+_117542416 Show fit | 0.21 |
ENST00000442245.5
|
empty spiracles homeobox 2 |
|
| chr7_-_72336995 Show fit | 0.21 |
ENST00000329008.9
|
calneuron 1 |
|
| chr8_-_133102477 Show fit | 0.20 |
ENST00000522119.5
ENST00000523610.5 ENST00000338087.10 ENST00000521302.5 ENST00000519558.5 ENST00000519747.5 ENST00000517648.5 |
Src like adaptor |
|
| chr1_+_4654601 Show fit | 0.16 |
ENST00000378191.5
|
adherens junctions associated protein 1 |
|
| chr6_+_116280098 Show fit | 0.14 |
ENST00000643175.1
ENST00000452085.7 |
dermatan sulfate epimerase |
|
| chr9_+_130579556 Show fit | 0.13 |
ENST00000319725.10
|
far upstream element binding protein 3 |
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | GO:0016198 | axon choice point recognition(GO:0016198) |
| 0.0 | 0.4 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
| 0.1 | 0.3 | GO:0021569 | rhombomere 3 development(GO:0021569) |
| 0.0 | 0.2 | GO:0030860 | regulation of polarized epithelial cell differentiation(GO:0030860) |
| 0.0 | 0.2 | GO:0021796 | cerebral cortex regionalization(GO:0021796) |
| 0.0 | 0.1 | GO:1903033 | regulation of microtubule plus-end binding(GO:1903031) positive regulation of microtubule plus-end binding(GO:1903033) |
| 0.0 | 0.1 | GO:0060061 | Spemann organizer formation(GO:0060061) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | GO:0032584 | growth cone membrane(GO:0032584) |
| 0.0 | 0.4 | GO:0043194 | axon initial segment(GO:0043194) |
| 0.0 | 0.2 | GO:0089717 | spanning component of plasma membrane(GO:0044214) spanning component of membrane(GO:0089717) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | GO:0035727 | lysophosphatidic acid binding(GO:0035727) |
| 0.0 | 0.4 | GO:0086080 | protein binding involved in heterotypic cell-cell adhesion(GO:0086080) |
| 0.0 | 0.1 | GO:0047757 | chondroitin-glucuronate 5-epimerase activity(GO:0047757) |
| 0.0 | 0.1 | GO:0004616 | phosphogluconate dehydrogenase (decarboxylating) activity(GO:0004616) |
| 0.0 | 0.1 | GO:0050119 | N-acetylglucosamine deacetylase activity(GO:0050119) |
| 0.0 | 0.1 | GO:0098770 | FBXO family protein binding(GO:0098770) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |