Project
GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
Navigation
Downloads
Results for GGAAGAC
Z-value: 0.48
Motif logo
miRNA associated with seed GGAAGAC
| Name | miRBASE accession |
|---|---|
|
hsa-miR-7-5p
|
MIMAT0000252 |
Network of associatons between targets according to the STRING database.
First level regulatory network of GGAAGAC
| Promoter | Score | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr5_-_111757704 Show fit | 6.14 |
ENST00000379671.7
|
neuronal regeneration related protein |
|
| chr3_-_12664101 Show fit | 5.17 |
ENST00000251849.9
ENST00000442415.7 |
Raf-1 proto-oncogene, serine/threonine kinase |
|
| chr7_-_10940123 Show fit | 4.99 |
ENST00000339600.6
|
NDUFA4 mitochondrial complex associated |
|
| chr12_-_106247950 Show fit | 4.60 |
ENST00000378026.5
|
cytoskeleton associated protein 4 |
|
| chr3_-_18425295 Show fit | 4.53 |
ENST00000338745.11
ENST00000450898.1 |
SATB homeobox 1 |
|
| chr2_-_160493799 Show fit | 4.44 |
ENST00000348849.8
|
RNA binding motif single stranded interacting protein 1 |
|
| chr19_-_47113756 Show fit | 4.10 |
ENST00000253048.10
|
zinc finger CCCH-type containing 4 |
|
| chr8_+_26577843 Show fit | 4.01 |
ENST00000311151.9
|
dihydropyrimidinase like 2 |
|
| chr2_-_131093378 Show fit | 3.91 |
ENST00000409185.5
ENST00000389915.4 |
family with sequence similarity 168 member B |
|
| chr1_+_112619824 Show fit | 3.61 |
ENST00000263168.4
|
capping actin protein of muscle Z-line subunit alpha 1 |
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.0 | GO:0006260 | DNA replication(GO:0006260) |
| 0.3 | 5.2 | GO:0071550 | death-inducing signaling complex assembly(GO:0071550) |
| 0.2 | 5.0 | GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen(GO:0006123) |
| 0.0 | 4.9 | GO:0043687 | post-translational protein modification(GO:0043687) |
| 0.3 | 4.5 | GO:0043374 | CD8-positive, alpha-beta T cell differentiation(GO:0043374) |
| 0.0 | 4.1 | GO:0030516 | regulation of axon extension(GO:0030516) |
| 0.1 | 3.9 | GO:0051016 | barbed-end actin filament capping(GO:0051016) |
| 0.6 | 3.3 | GO:0010748 | regulation of plasma membrane long-chain fatty acid transport(GO:0010746) negative regulation of plasma membrane long-chain fatty acid transport(GO:0010748) |
| 0.6 | 3.3 | GO:2000470 | negative regulation of dopamine uptake involved in synaptic transmission(GO:0051585) norepinephrine uptake(GO:0051620) regulation of norepinephrine uptake(GO:0051621) negative regulation of norepinephrine uptake(GO:0051622) negative regulation of catecholamine uptake involved in synaptic transmission(GO:0051945) regulation of glutathione peroxidase activity(GO:1903282) positive regulation of glutathione peroxidase activity(GO:1903284) positive regulation of hydrogen peroxide catabolic process(GO:1903285) regulation of peroxidase activity(GO:2000468) positive regulation of peroxidase activity(GO:2000470) |
| 0.2 | 3.0 | GO:1900028 | negative regulation of ruffle assembly(GO:1900028) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.7 | GO:0005874 | microtubule(GO:0005874) |
| 0.2 | 5.3 | GO:0031143 | pseudopodium(GO:0031143) |
| 0.4 | 5.0 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
| 0.2 | 4.6 | GO:0042599 | lamellar body(GO:0042599) |
| 0.3 | 3.9 | GO:0008290 | F-actin capping protein complex(GO:0008290) |
| 0.1 | 3.3 | GO:0031092 | platelet alpha granule membrane(GO:0031092) |
| 0.8 | 3.2 | GO:0042272 | nuclear RNA export factor complex(GO:0042272) |
| 0.0 | 3.0 | GO:0043195 | terminal bouton(GO:0043195) |
| 0.1 | 2.9 | GO:0005720 | nuclear heterochromatin(GO:0005720) |
| 0.9 | 2.8 | GO:0030289 | protein phosphatase 4 complex(GO:0030289) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.0 | GO:0045296 | cadherin binding(GO:0045296) |
| 0.2 | 5.7 | GO:0043548 | phosphatidylinositol 3-kinase binding(GO:0043548) |
| 0.2 | 5.3 | GO:0031434 | mitogen-activated protein kinase kinase binding(GO:0031434) |
| 0.2 | 5.0 | GO:0004129 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
| 1.3 | 4.0 | GO:0004157 | dihydropyrimidinase activity(GO:0004157) |
| 0.0 | 3.6 | GO:0001158 | enhancer sequence-specific DNA binding(GO:0001158) |
| 0.0 | 3.6 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
| 0.1 | 3.4 | GO:0019956 | chemokine binding(GO:0019956) |
| 0.6 | 3.3 | GO:0060961 | phospholipase D inhibitor activity(GO:0060961) |
| 0.5 | 3.2 | GO:0034046 | poly(G) binding(GO:0034046) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.2 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
| 0.1 | 5.2 | SIG IL4RECEPTOR IN B LYPHOCYTES | Genes related to IL4 rceptor signaling in B lymphocytes |
| 0.1 | 4.7 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.0 | 4.1 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.1 | 3.3 | PID ALPHA SYNUCLEIN PATHWAY | Alpha-synuclein signaling |
| 0.0 | 1.8 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
| 0.0 | 1.5 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
| 0.0 | 1.1 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
| 0.0 | 0.8 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
| 0.0 | 0.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 10.8 | REACTOME SOS MEDIATED SIGNALLING | Genes involved in SOS-mediated signalling |
| 0.1 | 5.3 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
| 0.1 | 5.0 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
| 0.1 | 4.2 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
| 0.1 | 3.9 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
| 0.2 | 3.6 | REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING | Genes involved in Advanced glycosylation endproduct receptor signaling |
| 0.1 | 3.5 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
| 0.1 | 3.3 | REACTOME AMYLOIDS | Genes involved in Amyloids |
| 0.0 | 3.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 3.0 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |