GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
NEUROG2 | hg38_v1_chr4_-_112516176_112516181 | 0.21 | 1.6e-03 | Click! |
NEUROD2 | hg38_v1_chr17_-_39607876_39607966 | 0.15 | 2.4e-02 | Click! |
Promoter | Score | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_195583931 Show fit | 10.45 |
ENST00000343267.8
ENST00000421243.5 ENST00000453131.1 |
apolipoprotein D |
|
chr3_-_149377637 Show fit | 10.08 |
ENST00000305366.8
|
transmembrane 4 L six family member 1 |
|
chr9_-_127873462 Show fit | 9.78 |
ENST00000223836.10
|
adenylate kinase 1 |
|
chr12_-_91179355 Show fit | 8.31 |
ENST00000550563.5
ENST00000546370.5 |
decorin |
|
chrX_+_70290077 Show fit | 7.42 |
ENST00000374403.4
|
kinesin family member 4A |
|
chr12_-_91179517 Show fit | 7.06 |
ENST00000551354.1
|
decorin |
|
chr2_-_151525986 Show fit | 6.77 |
ENST00000434685.5
|
nebulin |
|
chr2_-_215393126 Show fit | 6.48 |
ENST00000456923.5
|
fibronectin 1 |
|
chr12_-_91179472 Show fit | 6.27 |
ENST00000550099.5
ENST00000546391.5 |
decorin |
|
chr15_+_65550819 Show fit | 6.26 |
ENST00000569894.5
|
3-hydroxyacyl-CoA dehydratase 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 25.8 | GO:1900747 | negative regulation of vascular endothelial growth factor signaling pathway(GO:1900747) |
0.5 | 15.6 | GO:1904707 | positive regulation of vascular smooth muscle cell proliferation(GO:1904707) |
3.2 | 12.6 | GO:0014724 | regulation of twitch skeletal muscle contraction(GO:0014724) |
3.5 | 10.5 | GO:2000097 | regulation of smooth muscle cell-matrix adhesion(GO:2000097) |
0.2 | 9.8 | GO:0015949 | nucleobase-containing small molecule interconversion(GO:0015949) |
0.2 | 9.1 | GO:0032728 | positive regulation of interferon-beta production(GO:0032728) |
0.4 | 7.9 | GO:0052695 | cellular glucuronidation(GO:0052695) |
0.1 | 7.9 | GO:0070125 | mitochondrial translational elongation(GO:0070125) |
0.1 | 7.4 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
0.4 | 7.1 | GO:0051256 | mitotic spindle midzone assembly(GO:0051256) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 25.8 | GO:0005589 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.1 | 11.5 | GO:0022626 | cytosolic ribosome(GO:0022626) |
0.1 | 11.3 | GO:0030018 | Z disc(GO:0030018) |
0.2 | 10.0 | GO:0031430 | M band(GO:0031430) |
0.4 | 9.4 | GO:0031095 | platelet dense tubular network membrane(GO:0031095) |
0.0 | 9.1 | GO:0031965 | nuclear membrane(GO:0031965) |
0.1 | 7.4 | GO:0005871 | kinesin complex(GO:0005871) |
0.5 | 6.6 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.0 | 6.4 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.2 | 6.3 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 26.7 | GO:0050840 | extracellular matrix binding(GO:0050840) |
3.4 | 13.7 | GO:1904408 | dihydronicotinamide riboside quinone reductase activity(GO:0001512) melatonin binding(GO:1904408) |
0.1 | 11.4 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.2 | 11.2 | GO:0015485 | cholesterol binding(GO:0015485) |
0.2 | 10.6 | GO:0030507 | spectrin binding(GO:0030507) |
0.7 | 9.8 | GO:0004017 | adenylate kinase activity(GO:0004017) |
0.3 | 9.3 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.3 | 8.8 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.1 | 8.8 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.2 | 8.4 | GO:0001972 | retinoic acid binding(GO:0001972) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 25.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 7.4 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.2 | 6.7 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.1 | 6.4 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 4.9 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 4.7 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.1 | 4.7 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.0 | 4.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 4.6 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
0.1 | 3.8 | PID P53 REGULATION PATHWAY | p53 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 25.6 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.2 | 11.9 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.3 | 10.6 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.3 | 8.6 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.1 | 8.4 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.3 | 8.2 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
0.3 | 7.4 | REACTOME KINESINS | Genes involved in Kinesins |
0.3 | 7.3 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.1 | 5.9 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.2 | 5.4 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |