GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
NR2F6 | hg38_v1_chr19_-_17245889_17245954 | 0.41 | 2.7e-10 | Click! |
NR2C2 | hg38_v1_chr3_+_14947568_14947606, hg38_v1_chr3_+_14947680_14947729 | -0.39 | 2.3e-09 | Click! |
RXRA | hg38_v1_chr9_+_134326435_134326494 | -0.11 | 1.2e-01 | Click! |
Promoter | Score | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_50415799 Show fit | 36.14 |
ENST00000599632.1
|
novel protein |
|
chr12_+_95858928 Show fit | 28.95 |
ENST00000266735.9
ENST00000553192.5 ENST00000552085.1 |
small nuclear ribonucleoprotein polypeptide F |
|
chr6_+_24774925 Show fit | 27.42 |
ENST00000356509.7
ENST00000230056.8 |
geminin DNA replication inhibitor |
|
chr12_+_131929259 Show fit | 26.68 |
ENST00000542167.2
ENST00000376649.8 ENST00000538037.5 ENST00000456665.6 |
pseudouridine synthase 1 |
|
chr12_+_131929194 Show fit | 25.42 |
ENST00000443358.6
|
pseudouridine synthase 1 |
|
chr17_-_4949037 Show fit | 23.38 |
ENST00000572383.1
|
profilin 1 |
|
chr1_-_193106048 Show fit | 22.29 |
ENST00000367440.3
|
glutaredoxin 2 |
|
chr4_-_7068033 Show fit | 20.64 |
ENST00000264954.5
|
GrpE like 1, mitochondrial |
|
chr8_-_80029826 Show fit | 19.97 |
ENST00000519386.5
|
mitochondrial ribosomal protein S28 |
|
chr8_-_80029904 Show fit | 19.94 |
ENST00000521434.5
ENST00000519120.1 ENST00000520946.1 |
mitochondrial ribosomal protein S28 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 100.6 | GO:0070125 | mitochondrial translational elongation(GO:0070125) |
23.3 | 69.8 | GO:0070902 | mitochondrial tRNA pseudouridine synthesis(GO:0070902) |
0.8 | 60.1 | GO:0032981 | NADH dehydrogenase complex assembly(GO:0010257) mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031) |
2.6 | 42.3 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
1.9 | 34.9 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
0.8 | 33.3 | GO:0045737 | positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) |
0.9 | 29.0 | GO:0008334 | histone mRNA metabolic process(GO:0008334) |
2.6 | 28.2 | GO:0010756 | positive regulation of plasminogen activation(GO:0010756) |
5.5 | 27.4 | GO:0071163 | DNA replication preinitiation complex assembly(GO:0071163) |
0.3 | 26.4 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 172.8 | GO:0005759 | mitochondrial matrix(GO:0005759) |
2.3 | 65.1 | GO:0005763 | organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763) |
0.9 | 47.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.9 | 35.5 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.1 | 34.1 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
8.4 | 33.5 | GO:0001405 | presequence translocase-associated import motor(GO:0001405) |
6.3 | 31.5 | GO:0045272 | plasma membrane respiratory chain complex I(GO:0045272) |
1.9 | 31.1 | GO:0034366 | spherical high-density lipoprotein particle(GO:0034366) |
4.1 | 29.0 | GO:0005683 | U7 snRNP(GO:0005683) pICln-Sm protein complex(GO:0034715) |
0.5 | 28.4 | GO:0031430 | M band(GO:0031430) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 85.3 | GO:0003723 | RNA binding(GO:0003723) |
23.3 | 69.8 | GO:0004730 | pseudouridylate synthase activity(GO:0004730) |
0.3 | 64.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
3.4 | 44.0 | GO:0000774 | adenyl-nucleotide exchange factor activity(GO:0000774) |
0.3 | 38.6 | GO:0051082 | unfolded protein binding(GO:0051082) |
5.2 | 36.6 | GO:0030613 | oxidoreductase activity, acting on phosphorus or arsenic in donors(GO:0030613) oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor(GO:0030614) |
3.3 | 36.1 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
5.5 | 33.3 | GO:0061575 | cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575) |
1.7 | 32.7 | GO:0051537 | 2 iron, 2 sulfur cluster binding(GO:0051537) |
0.3 | 28.4 | GO:0070491 | repressing transcription factor binding(GO:0070491) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 66.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.8 | 60.6 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.7 | 53.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.9 | 31.6 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.4 | 27.1 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.2 | 14.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.2 | 13.3 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.3 | 12.8 | SIG CHEMOTAXIS | Genes related to chemotaxis |
0.3 | 11.6 | PID MYC PATHWAY | C-MYC pathway |
0.2 | 10.4 | PID CXCR3 PATHWAY | CXCR3-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 90.9 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
1.3 | 74.7 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.6 | 50.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.9 | 47.2 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.6 | 42.4 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.1 | 35.7 | REACTOME TRANSLATION | Genes involved in Translation |
1.7 | 31.8 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
1.9 | 29.0 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.8 | 23.5 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.6 | 23.4 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |