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GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)

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Results for UGUGCGU

Z-value: 0.06

Motif logo

miRNA associated with seed UGUGCGU

NamemiRBASE accession
MIMAT0000267

Activity profile of UGUGCGU motif

GNF_1_721_B_lymphoblastsGNF_1_AmygdalaGNF_1_BM-CD34+GNF_1_bronchialepithelialcellsGNF_1_CerebellumPedunclesGNF_1_DRGGNF_1_fetalThyroidGNF_1_kidneyGNF_1_LiverGNF_1_lymphomaburkittsRajiGNF_1_OvaryGNF_1_PB-BDCA4+Dentritic_CellsGNF_1_PB-CD19+BcellsGNF_1_PonsGNF_1_SkeletalMuscleGNF_1_subthalamicnucleusGNF_1_TestisGermCellGNF_1_ThalamusGNF_1_TonsilGNF_1_UterusCorpusGNF_2_ADIPOCYTEGNF_2_AppendixGNF_2_BM-CD71+EarlyErythroidGNF_2_CardiacMyocytesGNF_2_ciliaryganglionGNF_2_fetalbrainGNF_2_globuspallidusGNF_2_leukemiachronicmyelogenous(k562)GNF_2_LungGNF_2_MedullaOblongataGNF_2_PancreasGNF_2_PB-CD4+TcellsGNF_2_PB-CD56+NKCellsGNF_2_PrefrontalCortexGNF_2_skinGNF_2_SuperiorCervicalGanglionGNF_2_TestisInterstitialGNF_2_thymusGNF_2_tracheaGNF_2_WHOLEBLOODNCI60_1_A549_ATCCNCI60_1_CCRF-CEMNCI60_1_HCC-2998NCI60_1_HOP-92NCI60_1_IGROV1_rep1NCI60_1_LOXIMVINCI60_1_MDA-MB-435NCI60_1_NCI-ADR-RESNCI60_1_NCI-H522NCI60_1_OVCAR-3NCI60_1_SF-539NCI60_1_SK-MEL-5NCI60_1_SNB-75NCI60_1_T47DNCI60_1_UACC-62−0.1−0.0500.05

Sorted Z-values of UGUGCGU motif

−0.1−0.0500.050.10.15GNF_1_lymphnodeGNF_2_CardiacMyocytesGNF_1_thymusGNF_1_OvaryGNF_1_atrioventricularnodeNCI60_1_SRGNF_2_CerebellumPedunclesGNF_2_PB-CD4+TcellsGNF_1_TestisSeminiferousTubuleGNF_1_PB-CD8+TcellsGNF_1_ciliaryganglionGNF_2_PB-CD8+TcellsGNF_2_lymphomaburkittsRajiNCI60_1_OVCAR-5GNF_2_cerebellumGNF_2_TestisSeminiferousTubuleGNF_1_cerebellumGNF_2_ParietalLobeNCI60_1_MDA-MB-231_ATCCGNF_2_leukemiapromyelocytic(hl60)GNF_1_ColorectalAdenocarcinomaNCI60_1_HT29GNF_1_TONGUEGNF_2_PonsGNF_2_ThyroidGNF_2_MedullaOblongataGNF_1_PLACENTAGNF_2_LungGNF_2_ProstateGNF_2_salivaryglandGNF_1_PonsGNF_2_AmygdalaNCI60_1_NCI-H460GNF_2_TemporalLobeNCI60_1_MDA-NGNF_1_MedullaOblongataNCI60_1_HCC-2998NCI60_1_SK-MEL-5NCI60_1_K-562GNF_2_HypothalamusNCI60_1_SNB-19NCI60_1_IGROV1_rep1GNF_1_WholeBrainGNF_1_spinalcord

Network of associatons between targets according to the STRING database.

First level regulatory network of UGUGCGU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: