avrg: GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
Promoter | Score | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_+_121435595 Show fit | 14.96 |
ENST00000649003.1
ENST00000282561.4 |
gap junction protein alpha 1 |
|
chr3_-_195583931 Show fit | 14.34 |
ENST00000343267.8
ENST00000421243.5 ENST00000453131.1 |
apolipoprotein D |
|
chr2_+_188974364 Show fit | 13.00 |
ENST00000304636.9
ENST00000317840.9 |
collagen type III alpha 1 chain |
|
chr5_-_151686908 Show fit | 10.54 |
ENST00000231061.9
|
secreted protein acidic and cysteine rich |
|
chr3_-_123620571 Show fit | 9.50 |
ENST00000583087.5
|
myosin light chain kinase |
|
chr5_-_79991237 Show fit | 9.40 |
ENST00000512560.5
ENST00000509852.6 ENST00000512528.3 ENST00000617335.4 |
metaxin 3 |
|
chr3_-_123620496 Show fit | 8.69 |
ENST00000578202.1
|
myosin light chain kinase |
|
chr12_-_12338674 Show fit | 8.40 |
ENST00000545735.1
|
MANSC domain containing 1 |
|
chr12_-_91153149 Show fit | 8.12 |
ENST00000550758.1
|
decorin |
|
chr8_-_126557691 Show fit | 7.38 |
ENST00000652209.1
|
LRAT domain containing 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.2 | 31.2 | GO:0060414 | aorta smooth muscle tissue morphogenesis(GO:0060414) |
4.8 | 14.3 | GO:2000097 | regulation of smooth muscle cell-matrix adhesion(GO:2000097) |
0.0 | 13.9 | GO:0045666 | positive regulation of neuron differentiation(GO:0045666) |
3.4 | 13.5 | GO:0010652 | regulation of cell communication by chemical coupling(GO:0010645) positive regulation of cell communication by chemical coupling(GO:0010652) |
0.4 | 9.6 | GO:0009312 | oligosaccharide biosynthetic process(GO:0009312) |
0.2 | 9.0 | GO:0021952 | central nervous system projection neuron axonogenesis(GO:0021952) |
0.6 | 8.2 | GO:0034465 | response to carbon monoxide(GO:0034465) negative regulation of cell volume(GO:0045794) |
0.6 | 8.1 | GO:1900747 | negative regulation of vascular endothelial growth factor signaling pathway(GO:1900747) |
1.1 | 7.9 | GO:0033591 | response to L-ascorbic acid(GO:0033591) |
0.0 | 7.9 | GO:0006626 | protein targeting to mitochondrion(GO:0006626) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 18.2 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.1 | 14.1 | GO:0022626 | cytosolic ribosome(GO:0022626) |
0.8 | 13.5 | GO:0005922 | connexon complex(GO:0005922) |
1.0 | 13.0 | GO:0098643 | fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643) |
0.4 | 10.5 | GO:0071682 | endocytic vesicle lumen(GO:0071682) |
0.0 | 10.1 | GO:0060076 | excitatory synapse(GO:0060076) |
0.0 | 8.9 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.1 | 8.2 | GO:0005901 | caveola(GO:0005901) |
0.6 | 8.1 | GO:0005589 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.7 | 7.8 | GO:0005955 | calcineurin complex(GO:0005955) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.5 | 18.2 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.2 | 17.6 | GO:0050840 | extracellular matrix binding(GO:0050840) |
0.7 | 14.7 | GO:0001087 | transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087) |
0.3 | 14.5 | GO:0017091 | AU-rich element binding(GO:0017091) |
0.2 | 14.3 | GO:0015485 | cholesterol binding(GO:0015485) |
2.3 | 13.5 | GO:0086075 | gap junction channel activity involved in cardiac conduction electrical coupling(GO:0086075) |
1.0 | 13.0 | GO:0048407 | platelet-derived growth factor binding(GO:0048407) |
0.1 | 10.6 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
1.9 | 9.6 | GO:0047273 | galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity(GO:0047273) |
1.5 | 8.8 | GO:0015057 | thrombin receptor activity(GO:0015057) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 28.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
0.4 | 25.4 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.1 | 23.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 14.7 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.3 | 13.0 | NABA COLLAGENS | Genes encoding collagen proteins |
0.3 | 7.0 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.1 | 6.3 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.4 | 6.0 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 4.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 3.6 | PID AURORA B PATHWAY | Aurora B signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 15.3 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.2 | 14.5 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.8 | 13.5 | REACTOME GAP JUNCTION ASSEMBLY | Genes involved in Gap junction assembly |
0.2 | 12.9 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.1 | 11.3 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.4 | 10.7 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.2 | 7.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.2 | 6.8 | REACTOME THROMBIN SIGNALLING THROUGH PROTEINASE ACTIVATED RECEPTORS PARS | Genes involved in Thrombin signalling through proteinase activated receptors (PARs) |
0.2 | 6.0 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 5.6 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |