Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT1G09530_AT5G61380

Z-value: 1.09

Transcription factors associated with AT1G09530_AT5G61380

Gene Symbol Gene ID Gene Info
AT1G09530
AT1G09530 phytochrome interacting factor 3
AT5G61380
AT5G61380 CCT motif -containing response regulator protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TOC1arTal_v1_Chr5_+_24674963_246749630.901.4e-05Click!
PIF3arTal_v1_Chr1_+_3076401_30764010.554.0e-02Click!

Activity profile of AT1G09530_AT5G61380 motif

Sorted Z-values of AT1G09530_AT5G61380 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr1_+_3019639_3019639 4.32 AT1G09350.1
GolS3
galactinol synthase 3
arTal_v1_Chr1_+_3020221_3020221 4.02 AT1G09350.2
GolS3
galactinol synthase 3
arTal_v1_Chr3_+_3923969_3923969 2.44 AT3G12320.3
AT3G12320
hypothetical protein
arTal_v1_Chr3_+_3923515_3923515 2.42 AT3G12320.1
AT3G12320
hypothetical protein
arTal_v1_Chr3_+_3923735_3923735 2.37 AT3G12320.2
AT3G12320
hypothetical protein
arTal_v1_Chr4_-_13016235_13016235 1.95 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
arTal_v1_Chr5_+_579744_579852 1.55 AT5G02580.1
AT5G02580.3
AT5G02580.2
AT5G02580
argininosuccinate lyase
arTal_v1_Chr5_-_3595003_3595073 1.51 AT5G11260.2
AT5G11260.1
HY5
Basic-leucine zipper (bZIP) transcription factor family protein
arTal_v1_Chr5_-_23501416_23501416 1.25 AT5G58070.1
TIL
temperature-induced lipocalin
arTal_v1_Chr2_-_13005600_13005746 1.14 AT2G30520.2
AT2G30520.3
AT2G30520.1
RPT2
Phototropic-responsive NPH3 family protein
arTal_v1_Chr1_+_26038905_26038905 1.07 AT1G69260.1
AFP1
ABI five binding protein
arTal_v1_Chr2_+_1076863_1076863 1.03 AT2G03550.1
AT2G03550
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr4_+_13025834_13025834 0.99 AT4G25500.8
RS40
arginine/serine-rich splicing factor 35
arTal_v1_Chr4_-_16942060_16942060 0.97 AT4G35750.1
AT4G35750
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
arTal_v1_Chr1_-_467873_467880 0.95 AT1G02340.2
AT1G02340.1
HFR1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_+_23168454_23168454 0.84 AT3G62650.1
AT3G62650
hypothetical protein
arTal_v1_Chr3_+_23168061_23168061 0.81 AT3G62650.2
AT3G62650
hypothetical protein
arTal_v1_Chr4_-_347191_347293 0.78 AT4G00810.1
AT4G00810.2
AT4G00810
60S acidic ribosomal protein family
arTal_v1_Chr2_+_8139756_8139763 0.76 AT2G18790.2
AT2G18790.1
PHYB
phytochrome B
arTal_v1_Chr4_+_13024498_13024598 0.69 AT4G25500.5
AT4G25500.2
AT4G25500.3
AT4G25500.1
AT4G25500.6
AT4G25500.4
RS40
arginine/serine-rich splicing factor 35
arTal_v1_Chr1_+_25497145_25497290 0.57 AT1G68020.3
AT1G68020.1
ATTPS6
UDP-Glycosyltransferase / trehalose-phosphatase family protein
arTal_v1_Chr4_+_13024955_13024955 0.55 AT4G25500.7
RS40
arginine/serine-rich splicing factor 35
arTal_v1_Chr5_-_8145252_8145252 0.53 AT5G24090.1
CHIA
chitinase A
arTal_v1_Chr3_+_22329048_22329048 0.53 AT3G60400.1
SHOT1
Mitochondrial transcription termination factor family protein
arTal_v1_Chr1_+_25496928_25496928 0.48 AT1G68020.2
ATTPS6
UDP-Glycosyltransferase / trehalose-phosphatase family protein
arTal_v1_Chr3_-_4123582_4123582 0.48 AT3G12920.1
BRG3
SBP (S-ribonuclease binding protein) family protein
arTal_v1_Chr3_-_3923155_3923155 0.45 AT3G12300.1
BUG22
cilia/flagella-associated protein
arTal_v1_Chr1_-_7267354_7267377 0.44 AT1G20890.2
AT1G20890.1
AT1G20890
caveolin-1 protein
arTal_v1_Chr1_+_4459166_4459166 0.43 AT1G13080.2
CYP71B2
cytochrome P450, family 71, subfamily B, polypeptide 2
arTal_v1_Chr1_+_4459002_4459002 0.43 AT1G13080.1
CYP71B2
cytochrome P450, family 71, subfamily B, polypeptide 2
arTal_v1_Chr5_+_4156501_4156501 0.41 AT5G13100.1
AT5G13100
Gap junction beta-4 protein
arTal_v1_Chr4_+_15819489_15819489 0.39 AT4G32800.1
AT4G32800
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_+_11249600_11249618 0.36 AT1G31420.2
AT1G31420.1
AT1G31420.3
FEI1
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr5_+_4441858_4441858 0.25 AT5G13760.1
AT5G13760
Plasma-membrane choline transporter family protein
arTal_v1_Chr3_-_6804296_6804296 0.21 AT3G19580.1
ZF2
zinc-finger protein 2
arTal_v1_Chr2_+_762927_762927 0.21 AT2G02720.1
AT2G02720
Pectate lyase family protein
arTal_v1_Chr3_-_6804114_6804114 0.20 AT3G19580.2
ZF2
zinc-finger protein 2
arTal_v1_Chr5_+_24888596_24888596 0.18 AT5G61970.1
AT5G61970
signal recognition particle-related / SRP-like protein
arTal_v1_Chr2_-_8138142_8138142 0.17 AT2G18780.1
AT2G18780
F-box and associated interaction domains-containing protein
arTal_v1_Chr1_-_28318362_28318375 0.14 AT1G75450.1
AT1G75450.2
CKX5
cytokinin oxidase 5
arTal_v1_Chr2_+_19229070_19229094 0.10 AT2G46780.1
AT2G46780.2
AT2G46780
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr1_-_6898818_6898818 0.08 AT1G19870.1
AT1G19870.2
iqd32
IQ-domain 32
arTal_v1_Chr2_+_18839588_18839675 0.08 AT2G45740.3
AT2G45740.1
PEX11D
peroxin 11D
arTal_v1_Chr1_+_29099839_29099839 0.06 AT1G77450.1
NAC032
NAC domain containing protein 32
arTal_v1_Chr5_+_25765712_25765712 0.06 AT5G64440.1
FAAH
fatty acid amide hydrolase
arTal_v1_Chr2_+_18839435_18839435 0.05 AT2G45740.2
PEX11D
peroxin 11D

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530_AT5G61380

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 GO:0006883 cellular sodium ion homeostasis(GO:0006883) chloride ion homeostasis(GO:0055064)
0.3 8.3 GO:0006012 galactose metabolic process(GO:0006012)
0.2 0.8 GO:0010617 circadian regulation of calcium ion oscillation(GO:0010617)
0.1 2.2 GO:0031053 primary miRNA processing(GO:0031053)
0.1 1.5 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.1 1.1 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.1 1.1 GO:0009638 phototropism(GO:0009638)
0.1 0.9 GO:0030522 blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.0 0.5 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.0 1.9 GO:0009631 cold acclimation(GO:0009631)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.9 GO:0010286 heat acclimation(GO:0010286)
0.0 0.1 GO:0044375 regulation of peroxisome size(GO:0044375)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.2 GO:0010445 nuclear dicing body(GO:0010445)
0.1 1.2 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 0.2 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 8.3 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.2 0.8 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.1 1.1 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.2 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.0 1.0 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 0.5 GO:0004568 chitinase activity(GO:0004568)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)