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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G50640

Z-value: 1.04

Transcription factors associated with AT1G50640

Gene Symbol Gene ID Gene Info
AT1G50640
AT1G50640 ethylene responsive element binding factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ERF3arTal_v1_Chr1_-_18758708_18758708-0.401.6e-01Click!

Activity profile of AT1G50640 motif

Sorted Z-values of AT1G50640 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr3_-_2699420_2699420 1.37 AT3G08860.1
PYD4
PYRIMIDINE 4
arTal_v1_Chr3_-_2699257_2699257 1.37 AT3G08860.2
PYD4
PYRIMIDINE 4
arTal_v1_Chr2_+_9126263_9126263 1.27 AT2G21320.1
BBX18
B-box zinc finger family protein
arTal_v1_Chr2_-_16603059_16603061 1.20 AT2G39800.2
AT2G39800.4
AT2G39800.3
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
arTal_v1_Chr4_+_12916926_12916926 1.18 AT4G25200.1
HSP23.6-MITO
mitochondrion-localized small heat shock protein 23.6
arTal_v1_Chr3_+_20612693_20612693 1.14 AT3G55580.1
AT3G55580
Regulator of chromosome condensation (RCC1) family protein
arTal_v1_Chr5_-_8444101_8444101 1.09 AT5G24660.1
LSU2
response to low sulfur 2
arTal_v1_Chr2_-_16603319_16603319 1.08 AT2G39800.1
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
arTal_v1_Chr3_-_22907958_22907958 0.94 AT3G61880.1
AT3G61880.2
CYP78A9
cytochrome p450 78a9
arTal_v1_Chr1_+_3066674_3066753 0.93 AT1G09500.1
AT1G09500.2
AT1G09500.3
AT1G09500
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr2_-_14310608_14310608 0.90 AT2G33830.2
AT2G33830
Dormancy/auxin associated family protein
arTal_v1_Chr1_-_29716255_29716255 0.89 AT1G78995.1
AT1G78995
hypothetical protein
arTal_v1_Chr2_-_14310339_14310339 0.88 AT2G33830.1
AT2G33830
Dormancy/auxin associated family protein
arTal_v1_Chr4_+_9171280_9171280 0.79 AT4G16190.1
AT4G16190
Papain family cysteine protease
arTal_v1_Chr4_-_9920511_9920511 0.79 AT4G17840.1
AT4G17840
CAAX protease self-immunity protein
arTal_v1_Chr1_+_23953099_23953099 0.77 AT1G64500.1
AT1G64500
Glutaredoxin family protein
arTal_v1_Chr1_+_24028830_24028830 0.76 AT1G64660.1
MGL
methionine gamma-lyase
arTal_v1_Chr3_+_1086516_1086516 0.75 AT3G04140.1
AT3G04140
Ankyrin repeat family protein
arTal_v1_Chr1_-_22317070_22317070 0.74 AT1G60590.1
AT1G60590
Pectin lyase-like superfamily protein
arTal_v1_Chr3_-_18373147_18373147 0.73 AT3G49570.1
LSU3
response to low sulfur 3
arTal_v1_Chr1_+_24113109_24113109 0.72 AT1G64900.1
CYP89A2
cytochrome P450, family 89, subfamily A, polypeptide 2
arTal_v1_Chr3_-_4657723_4657723 0.70 AT3G14060.1
AT3G14060
hypothetical protein
arTal_v1_Chr1_+_15976805_15976805 0.68 AT1G42550.1
PMI1
plastid movement impaired1
arTal_v1_Chr5_-_6993948_6993948 0.67 AT5G20670.1
AT5G20670
DUF1677 family protein (DUF1677)
arTal_v1_Chr3_-_826585_826585 0.65 AT3G03470.1
CYP89A9
cytochrome P450, family 87, subfamily A, polypeptide 9
arTal_v1_Chr3_-_3282131_3282131 0.64 AT3G10525.1
LGO
LOSS OF GIANT CELLS FROM ORGANS
arTal_v1_Chr1_-_17266724_17266824 0.63 AT1G46768.3
AT1G46768.2
AT1G46768.1
RAP2.1
related to AP2 1
arTal_v1_Chr5_-_1994824_1994961 0.61 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABCG22
ABC-2 type transporter family protein
arTal_v1_Chr2_-_9814738_9814738 0.60 AT2G23060.2
AT2G23060.1
AT2G23060
Acyl-CoA N-acyltransferases (NAT) superfamily protein
arTal_v1_Chr1_-_19690589_19690589 0.60 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
arTal_v1_Chr5_-_315405_315405 0.59 AT5G01820.1
SR1
serine/threonine protein kinase 1
arTal_v1_Chr3_-_5358427_5358596 0.59 AT3G15840.4
AT3G15840.2
AT3G15840.3
AT3G15840.5
AT3G15840.1
PIFI
post-illumination chlorophyll fluorescence increase
arTal_v1_Chr1_+_6927736_6927736 0.58 AT1G19960.1
AT1G19960
transcription factor
arTal_v1_Chr1_-_6812757_6812757 0.58 AT1G19700.3
AT1G19700.1
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr4_-_16942060_16942060 0.57 AT4G35750.1
AT4G35750
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
arTal_v1_Chr1_+_2238017_2238154 0.56 AT1G07280.1
AT1G07280.2
AT1G07280.4
AT1G07280.3
AT1G07280
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr5_+_16893849_16893849 0.56 AT5G42250.1
AT5G42250
Zinc-binding alcohol dehydrogenase family protein
arTal_v1_Chr1_-_754262_754262 0.55 AT1G03130.1
PSAD-2
photosystem I subunit D-2
arTal_v1_Chr1_-_6811994_6811994 0.55 AT1G19700.2
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr3_+_9758797_9758797 0.55 AT3G26580.1
AT3G26580
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr3_+_5518211_5518331 0.55 AT3G16280.2
AT3G16280.1
AT3G16280
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr2_+_11620076_11620076 0.54 AT2G27180.1
AT2G27180
hypothetical protein
arTal_v1_Chr3_-_20629295_20629295 0.54 AT3G55610.1
P5CS2
delta 1-pyrroline-5-carboxylate synthase 2
arTal_v1_Chr2_+_18991171_18991171 0.54 AT2G46250.2
AT2G46250.1
AT2G46250
myosin heavy chain-like protein
arTal_v1_Chr1_-_30142697_30142697 0.54 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr5_+_16579936_16579936 0.53 AT5G41410.1
BEL1
POX (plant homeobox) family protein
arTal_v1_Chr1_-_6812523_6812523 0.53 AT1G19700.4
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr2_-_17065813_17065813 0.53 AT2G40900.1
UMAMIT11
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr4_-_9421857_9421857 0.53 AT4G16750.1
AT4G16750
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_-_5018347_5018347 0.53 AT5G15450.1
CLPB3
casein lytic proteinase B3
arTal_v1_Chr3_-_6617951_6617951 0.53 AT3G19150.3
AT3G19150.1
KRP6
KIP-related protein 6
arTal_v1_Chr1_+_27778984_27778984 0.52 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
arTal_v1_Chr3_-_9646093_9646093 0.52 AT3G26320.1
CYP71B36
cytochrome P450, family 71, subfamily B, polypeptide 36
arTal_v1_Chr1_-_6813063_6813063 0.52 AT1G19700.5
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr5_-_24767732_24767732 0.52 AT5G61600.1
ERF104
ethylene response factor 104
arTal_v1_Chr3_-_20629093_20629093 0.52 AT3G55610.2
P5CS2
delta 1-pyrroline-5-carboxylate synthase 2
arTal_v1_Chr3_+_5341356_5341356 0.52 AT3G15780.1
AT3G15780
transmembrane protein
arTal_v1_Chr2_-_10113005_10113018 0.52 AT2G23760.3
AT2G23760.4
AT2G23760.1
BLH4
BEL1-like homeodomain 4
arTal_v1_Chr3_+_7667027_7667027 0.52 AT3G21760.1
HYR1
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr1_+_24614817_24614817 0.52 AT1G66130.1
AT1G66130
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr5_+_21128085_21128129 0.51 AT5G52030.1
AT5G52030.2
AT5G52030
TraB family protein
arTal_v1_Chr5_+_26176021_26176021 0.51 AT5G65480.1
AT5G65480
hypothetical protein
arTal_v1_Chr3_-_19910226_19910244 0.51 AT3G53720.1
AT3G53720.2
CHX20
cation/H+ exchanger 20
arTal_v1_Chr1_+_28143851_28143851 0.51 AT1G74930.1
ORA47
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_-_26757236_26757236 0.51 AT5G67030.2
ABA1
zeaxanthin epoxidase (ZEP) (ABA1)
arTal_v1_Chr3_-_2654212_2654212 0.51 AT3G08730.1
AT3G08730.2
PK1
protein-serine kinase 1
arTal_v1_Chr4_+_5461398_5461434 0.51 AT4G08580.1
AT4G08580.2
AT4G08580
microfibrillar-associated protein-like protein
arTal_v1_Chr5_-_26757402_26757402 0.51 AT5G67030.1
ABA1
zeaxanthin epoxidase (ZEP) (ABA1)
arTal_v1_Chr5_+_21505074_21505074 0.50 AT5G53030.1
AT5G53030.2
AT5G53030
hypothetical protein
arTal_v1_Chr1_-_4066344_4066344 0.50 AT1G12030.1
AT1G12030
phosphoenolpyruvate carboxylase, putative (DUF506)
arTal_v1_Chr5_+_4427783_4427783 0.50 AT5G13720.1
AT5G13720
Uncharacterized protein family (UPF0114)
arTal_v1_Chr4_+_17554493_17554493 0.50 AT4G37300.1
MEE59
maternal effect embryo arrest 59
arTal_v1_Chr1_-_12053935_12053935 0.49 AT1G33240.2
GTL1
GT-2-like 1
arTal_v1_Chr3_-_8268961_8268961 0.49 AT3G23170.1
AT3G23170
hypothetical protein
arTal_v1_Chr1_+_24957362_24957362 0.49 AT1G66890.1
AT1G66890
50S ribosomal-like protein
arTal_v1_Chr2_+_8998450_8998450 0.48 AT2G20920.1
AT2G20920
chaperone (DUF3353)
arTal_v1_Chr3_+_7959753_7959753 0.48 AT3G22440.1
AT3G22440
FRIGIDA-like protein
arTal_v1_Chr5_-_8659352_8659352 0.48 AT5G25110.1
CIPK25
CBL-interacting protein kinase 25
arTal_v1_Chr3_+_5081780_5081908 0.48 AT3G15095.2
AT3G15095.1
AT3G15095.3
HCF243
Serine/Threonine-kinase pakA-like protein
arTal_v1_Chr1_-_5727406_5727406 0.48 AT1G16730.1
UP6
hypothetical protein
arTal_v1_Chr3_+_7638584_7638584 0.48 AT3G21690.1
AT3G21690
MATE efflux family protein
arTal_v1_Chr5_+_15606683_15606683 0.48 AT5G38980.1
AT5G38980
transmembrane protein
arTal_v1_Chr1_-_2013459_2013545 0.48 AT1G06570.1
AT1G06570.2
PDS1
4-hydroxyphenylpyruvate dioxygenase
arTal_v1_Chr3_+_16383595_16383595 0.48 AT3G44880.1
ACD1
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
arTal_v1_Chr5_+_17798262_17798281 0.48 AT5G44190.2
AT5G44190.1
GLK2
GOLDEN2-like 2
arTal_v1_Chr3_+_16818347_16818347 0.48 AT3G45780.2
PHOT1
phototropin 1
arTal_v1_Chr1_+_27628678_27628678 0.48 AT1G73480.1
AT1G73480
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr2_-_19287590_19287590 0.47 AT2G46940.1
AT2G46940
fold protein
arTal_v1_Chr1_+_6945695_6945695 0.47 AT1G20030.1
AT1G20030
Pathogenesis-related thaumatin superfamily protein
arTal_v1_Chr3_+_16816721_16816721 0.47 AT3G45780.1
PHOT1
phototropin 1
arTal_v1_Chr1_-_12054753_12054753 0.47 AT1G33240.1
AT1G33240.3
GTL1
GT-2-like 1
arTal_v1_Chr2_-_10831655_10831655 0.47 AT2G25450.1
AT2G25450
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
arTal_v1_Chr2_-_14211693_14211693 0.47 AT2G33550.1
AT2G33550
Homeodomain-like superfamily protein
arTal_v1_Chr5_+_24480291_24480291 0.47 AT5G60850.1
OBP4
OBF binding protein 4
arTal_v1_Chr5_-_22055443_22055443 0.47 AT5G54300.1
AT5G54300
cotton fiber-like protein (DUF761)
arTal_v1_Chr5_-_4697078_4697078 0.47 AT5G14570.1
NRT2.7
high affinity nitrate transporter 2.7
arTal_v1_Chr4_+_18160903_18160903 0.47 AT4G38960.2
AT4G38960.6
AT4G38960.5
AT4G38960.1
AT4G38960.4
BBX19
B-box type zinc finger family protein
arTal_v1_Chr5_+_25692425_25692425 0.47 AT5G64230.1
AT5G64230
1,8-cineole synthase
arTal_v1_Chr2_+_10574942_10574942 0.46 AT2G24820.1
TIC55-II
translocon at the inner envelope membrane of chloroplasts 55-II
arTal_v1_Chr1_-_9834510_9834510 0.46 AT1G28140.1
AT1G28140
integral membrane family protein
arTal_v1_Chr2_-_8850111_8850111 0.46 AT2G20560.1
AT2G20560
DNAJ heat shock family protein
arTal_v1_Chr1_+_6945425_6945425 0.46 AT1G20030.2
AT1G20030
Pathogenesis-related thaumatin superfamily protein
arTal_v1_Chr2_+_1679307_1679507 0.45 AT2G04790.10
AT2G04790.6
AT2G04790.5
AT2G04790.7
AT2G04790.9
AT2G04790.8
AT2G04790.13
AT2G04790.12
AT2G04790.11
AT2G04790.14
AT2G04790.15
AT2G04790.16
AT2G04790.4
AT2G04790.3
AT2G04790.1
AT2G04790.2
AT2G04790
PTB domain engulfment adapter
arTal_v1_Chr1_-_130570_130577 0.45 AT1G01320.1
AT1G01320.3
AT1G01320.2
AT1G01320
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr4_-_8870801_8870979 0.45 AT4G15530.7
AT4G15530.6
AT4G15530.5
AT4G15530.3
AT4G15530.4
AT4G15530.1
PPDK
pyruvate orthophosphate dikinase
arTal_v1_Chr1_+_27786864_27786864 0.45 AT1G73885.1
AT1G73885
AT-rich interactive domain protein
arTal_v1_Chr3_+_649814_649814 0.45 AT3G02910.1
AT3G02910
AIG2-like (avirulence induced gene) family protein
arTal_v1_Chr1_+_22198266_22198266 0.45 AT1G60190.1
PUB19
ARM repeat superfamily protein
arTal_v1_Chr2_+_15005064_15005064 0.45 AT2G35700.1
ERF38
ERF family protein 38
arTal_v1_Chr3_-_11259055_11259074 0.45 AT3G29330.1
AT3G29330.2
AT3G29330
zinc finger RNA-binding-like protein
arTal_v1_Chr5_+_7379187_7379187 0.45 AT5G22300.1
AT5G22300.2
NIT4
nitrilase 4
arTal_v1_Chr1_-_26058383_26058383 0.45 AT1G69310.2
AT1G69310.1
WRKY57
WRKY DNA-binding protein 57
arTal_v1_Chr2_-_10113327_10113327 0.45 AT2G23760.2
BLH4
BEL1-like homeodomain 4
arTal_v1_Chr1_+_28174187_28174187 0.45 AT1G75030.1
TLP-3
thaumatin-like protein 3
arTal_v1_Chr2_-_9978090_9978090 0.45 AT2G23430.1
ICK1
Cyclin-dependent kinase inhibitor family protein
arTal_v1_Chr5_-_1843872_1843872 0.45 AT5G06110.1
AT5G06110.2
AT5G06110
DnaJ and myb-like DNA-binding domain-containing protein
arTal_v1_Chr1_+_29338530_29338530 0.44 AT1G78020.1
AT1G78020
senescence-associated family protein, putative (DUF581)
arTal_v1_Chr2_-_13120199_13120199 0.44 AT2G30790.1
PSBP-2
photosystem II subunit P-2
arTal_v1_Chr1_-_26119710_26119710 0.44 AT1G69485.1
AT1G69485
Ribosomal L32p protein family
arTal_v1_Chr5_-_14123362_14123362 0.44 AT5G35970.1
AT5G35970
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr3_-_4974521_4974534 0.44 AT3G14810.1
AT3G14810.2
MSL5
mechanosensitive channel of small conductance-like 5
arTal_v1_Chr4_-_12051796_12051891 0.44 AT4G22990.1
AT4G22990.2
AT4G22990.3
AT4G22990
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
arTal_v1_Chr1_-_6805092_6805092 0.44 AT1G19670.1
CLH1
chlorophyllase 1
arTal_v1_Chr1_+_29099839_29099839 0.44 AT1G77450.1
NAC032
NAC domain containing protein 32
arTal_v1_Chr1_-_26058105_26058164 0.43 AT1G69310.4
AT1G69310.3
WRKY57
WRKY DNA-binding protein 57
arTal_v1_Chr3_-_21008064_21008068 0.43 AT3G56710.1
AT3G56710.2
SIB1
sigma factor binding protein 1
arTal_v1_Chr3_+_7906521_7906521 0.43 AT3G22370.1
AOX1A
alternative oxidase 1A
arTal_v1_Chr3_+_11527756_11527756 0.43 AT3G29670.1
PMAT2
HXXXD-type acyl-transferase family protein
arTal_v1_Chr1_+_12004854_12004927 0.42 AT1G33110.1
AT1G33110.2
AT1G33110
MATE efflux family protein
arTal_v1_Chr1_-_23801720_23801799 0.42 AT1G64110.1
AT1G64110.3
AT1G64110.2
DAA1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr1_+_23740493_23740562 0.42 AT1G63980.1
AT1G63980.2
AT1G63980
D111/G-patch domain-containing protein
arTal_v1_Chr2_+_10426342_10426342 0.42 AT2G24540.1
AFR
Galactose oxidase/kelch repeat superfamily protein
arTal_v1_Chr4_-_12068538_12068624 0.42 AT4G23020.2
AT4G23020.1
TRM11
hypothetical protein
arTal_v1_Chr3_-_6617677_6617677 0.42 AT3G19150.2
KRP6
KIP-related protein 6
arTal_v1_Chr2_+_426052_426052 0.42 AT2G01920.1
AT2G01920
ENTH/VHS/GAT family protein
arTal_v1_Chr4_-_8869319_8869319 0.41 AT4G15530.2
PPDK
pyruvate orthophosphate dikinase
arTal_v1_Chr5_+_338896_338896 0.41 AT5G01880.1
AT5G01880
RING/U-box superfamily protein
arTal_v1_Chr2_+_10379948_10379958 0.41 AT2G24420.1
AT2G24420.2
AT2G24420
DNA repair ATPase-like protein
arTal_v1_Chr1_-_17706460_17706460 0.41 AT1G48000.1
MYB112
myb domain protein 112
arTal_v1_Chr1_-_7652288_7652288 0.41 AT1G21770.1
AT1G21770
Acyl-CoA N-acyltransferases (NAT) superfamily protein
arTal_v1_Chr1_-_3592580_3592580 0.41 AT1G10770.1
AT1G10770
Plant invertase/pectin methylesterase inhibitor superfamily protein
arTal_v1_Chr1_+_22409298_22409298 0.41 AT1G60870.1
MEE9
maternal effect embryo arrest 9
arTal_v1_Chr5_-_305912_305912 0.41 AT5G01790.1
AT5G01790
hypothetical protein
arTal_v1_Chr5_+_26311587_26311587 0.41 AT5G65770.2
AT5G65770.1
LINC4
little nuclei4
arTal_v1_Chr1_+_28865314_28865314 0.41 AT1G76880.1
AT1G76880
Duplicated homeodomain-like superfamily protein
arTal_v1_Chr5_-_6800903_6800977 0.41 AT5G20140.1
AT5G20140.2
HBP5
SOUL heme-binding family protein
arTal_v1_Chr4_+_8516372_8516372 0.40 AT4G14860.1
OFP11
ovate family protein 11
arTal_v1_Chr2_+_16556801_16556801 0.40 AT2G39705.1
RTFL8
ROTUNDIFOLIA like 8
arTal_v1_Chr2_+_18795926_18795988 0.40 AT2G45630.1
AT2G45630.2
AT2G45630
D-isomer specific 2-hydroxyacid dehydrogenase family protein
arTal_v1_Chr5_+_1389979_1390030 0.39 AT5G04810.1
AT5G04810.2
AT5G04810
pentatricopeptide (PPR) repeat-containing protein
arTal_v1_Chr1_-_19683565_19683565 0.39 AT1G52855.1
AT1G52855
hypothetical protein
arTal_v1_Chr2_-_10672892_10672892 0.39 AT2G25090.1
CIPK16
CBL-interacting protein kinase 16
arTal_v1_Chr5_-_3814828_3814906 0.39 AT5G11840.3
AT5G11840.4
AT5G11840.2
AT5G11840.1
AT5G11840
YCF36, putative (DUF1230)
arTal_v1_Chr5_-_902757_902770 0.39 AT5G03560.4
AT5G03560.3
AT5G03560.1
AT5G03560.2
AT5G03560
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr5_-_3447278_3447278 0.39 AT5G10930.1
CIPK5
CBL-interacting protein kinase 5
arTal_v1_Chr3_-_6804296_6804296 0.38 AT3G19580.1
ZF2
zinc-finger protein 2
arTal_v1_Chr5_+_589199_589199 0.38 AT5G02620.2
AT5G02620.3
AT5G02620.4
ANK1
ankyrin-like1
arTal_v1_Chr4_+_15233042_15233074 0.38 AT4G31390.3
AT4G31390.1
AT4G31390.2
ACDO1
Protein kinase superfamily protein
arTal_v1_Chr1_-_105330_105330 0.38 AT1G01250.1
AT1G01250
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr4_+_15361012_15361012 0.38 AT4G31730.1
GDU1
glutamine dumper 1
arTal_v1_Chr5_+_8188166_8188166 0.38 AT5G24165.1
AT5G24165.2
AT5G24165
hypothetical protein
arTal_v1_Chr5_-_21068327_21068327 0.38 AT5G51820.1
PGM
phosphoglucomutase
arTal_v1_Chr5_-_4633925_4633925 0.38 AT5G14370.1
AT5G14370
CCT motif family protein
arTal_v1_Chr1_-_30260732_30260732 0.38 AT1G80480.1
PTAC17
plastid transcriptionally active 17
arTal_v1_Chr3_-_16876083_16876083 0.38 AT3G45900.1
AT3G45900
Ribonuclease P protein subunit P38-like protein
arTal_v1_Chr5_-_20307943_20307943 0.38 AT5G49920.1
AT5G49920
Octicosapeptide/Phox/Bem1p family protein
arTal_v1_Chr2_-_7631910_7631926 0.38 AT2G17540.3
AT2G17540.4
AT2G17540.2
AT2G17540.1
AT2G17540
hypothetical protein
arTal_v1_Chr4_+_17369179_17369320 0.37 AT4G36870.3
AT4G36870.1
AT4G36870.4
BLH2
BEL1-like homeodomain 2
arTal_v1_Chr3_-_6804114_6804114 0.37 AT3G19580.2
ZF2
zinc-finger protein 2
arTal_v1_Chr1_-_23818481_23818481 0.37 AT1G64170.1
CHX16
cation/H+ exchanger 16
arTal_v1_Chr4_+_17540490_17540490 0.37 AT4G37260.1
MYB73
myb domain protein 73
arTal_v1_Chr2_+_16726424_16726424 0.37 AT2G40060.1
CLC2
Clathrin light chain protein
arTal_v1_Chr3_-_5085942_5085942 0.37 AT3G15110.1
AT3G15110
transmembrane protein
arTal_v1_Chr3_-_5845220_5845220 0.37 AT3G17130.1
AT3G17130
Plant invertase/pectin methylesterase inhibitor superfamily protein
arTal_v1_Chr2_+_13647699_13647699 0.37 AT2G32100.1
OFP16
ovate family protein 16
arTal_v1_Chr4_-_9850927_9850927 0.37 AT4G17695.1
KAN3
Homeodomain-like superfamily protein
arTal_v1_Chr2_+_12418017_12418017 0.37 AT2G28920.1
AT2G28920
RING/U-box superfamily protein
arTal_v1_Chr5_+_589404_589404 0.37 AT5G02620.1
AT5G02620.5
ANK1
ankyrin-like1
arTal_v1_Chr2_+_10566836_10566898 0.36 AT2G24790.1
AT2G24790.2
COL3
CONSTANS-like 3
arTal_v1_Chr2_+_6797111_6797111 0.36 AT2G15580.3
AT2G15580.1
AT2G15580
RING/U-box superfamily protein
arTal_v1_Chr3_+_5705541_5705541 0.36 AT3G16770.1
EBP
ethylene-responsive element binding protein
arTal_v1_Chr2_+_19476326_19476326 0.36 AT2G47460.1
MYB12
myb domain protein 12
arTal_v1_Chr1_-_2168257_2168397 0.36 AT1G07060.4
AT1G07060.2
AT1G07060.3
AT1G07060.1
DFO
hypothetical protein
arTal_v1_Chr5_-_8458756_8458756 0.36 AT5G24690.1
AT5G24690
plant/protein, putative (DUF3411)
arTal_v1_Chr5_-_7377667_7377776 0.36 AT5G22290.2
AT5G22290.1
NAC089
NAC domain containing protein 89
arTal_v1_Chr4_+_7042354_7042354 0.36 AT4G11660.1
AT-HSFB2B
winged-helix DNA-binding transcription factor family protein
arTal_v1_Chr5_+_21281569_21281569 0.36 AT5G52420.1
AT5G52420
transmembrane protein
arTal_v1_Chr3_-_20257916_20257916 0.36 AT3G54720.1
AMP1
Peptidase M28 family protein
arTal_v1_Chr2_+_14097369_14097369 0.35 AT2G33250.1
AT2G33250
transmembrane protein
arTal_v1_Chr2_+_17756069_17756069 0.35 AT2G42620.1
MAX2
RNI-like superfamily protein
arTal_v1_Chr3_+_22902491_22902638 0.35 AT3G61870.1
AT3G61870.2
AT3G61870
plant/protein
arTal_v1_Chr1_-_25445357_25445357 0.35 AT1G67860.1
AT1G67860
transmembrane protein
arTal_v1_Chr4_+_10453904_10453904 0.35 AT4G19100.2
PAM68
PAM68-like protein (DUF3464)
arTal_v1_Chr5_+_24732597_24732597 0.35 AT5G61490.1
AT5G61490
transmembrane protein
arTal_v1_Chr5_+_26311311_26311311 0.35 AT5G65770.3
AT5G65780.2
LINC4
ATBCAT-5
little nuclei4
branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
arTal_v1_Chr4_+_6268273_6268273 0.35 AT4G10020.1
HSD5
hydroxysteroid dehydrogenase 5
arTal_v1_Chr5_-_23523818_23523818 0.35 AT5G58130.1
ROS3
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr5_+_2763823_2763823 0.34 AT5G08540.1
AT5G08540
ribosomal RNA small subunit methyltransferase J
arTal_v1_Chr5_+_937817_937819 0.34 AT5G03660.3
AT5G03660.1
AT5G03660
transcriptional activator (DUF662)
arTal_v1_Chr5_-_10295283_10295283 0.34 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G50640

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 3.3 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.2 0.6 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.2 1.0 GO:0051289 protein homotetramerization(GO:0051289)
0.2 1.0 GO:0010361 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.2 0.8 GO:0097298 regulation of nucleus size(GO:0097298)
0.2 2.6 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.2 1.7 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.2 1.1 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.2 1.5 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.1 1.0 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.1 0.7 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.1 0.4 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.1 0.4 GO:0019499 cyanide metabolic process(GO:0019499)
0.1 0.3 GO:0016124 tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
0.1 0.3 GO:0010447 response to acidic pH(GO:0010447)
0.1 0.4 GO:0090069 regulation of ribosome biogenesis(GO:0090069)
0.1 1.0 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.1 1.0 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.1 0.3 GO:0032411 singlet oxygen-mediated programmed cell death(GO:0010343) positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of anion channel activity(GO:1901529) response to strigolactone(GO:1902347) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.1 0.4 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.1 0.3 GO:2000029 regulation of proanthocyanidin biosynthetic process(GO:2000029)
0.1 1.7 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.1 0.6 GO:0010148 transpiration(GO:0010148)
0.1 0.5 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 0.4 GO:1901535 regulation of DNA demethylation(GO:1901535)
0.1 0.4 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.1 0.7 GO:0010230 alternative respiration(GO:0010230)
0.1 0.3 GO:0080168 abscisic acid transport(GO:0080168)
0.1 0.2 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.1 0.4 GO:0009590 detection of gravity(GO:0009590)
0.1 0.6 GO:0070370 cellular heat acclimation(GO:0070370)
0.1 0.3 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.3 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.1 0.3 GO:0030322 stabilization of membrane potential(GO:0030322)
0.1 0.4 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.1 0.3 GO:0042549 photosystem II stabilization(GO:0042549)
0.1 0.5 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.1 0.3 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.1 3.2 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.1 0.1 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 0.3 GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.1 0.4 GO:0046717 acid secretion(GO:0046717)
0.1 0.8 GO:0010161 red light signaling pathway(GO:0010161)
0.1 0.6 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.1 0.2 GO:0046203 spermidine catabolic process(GO:0046203)
0.1 0.5 GO:0071249 cellular response to nitrate(GO:0071249)
0.1 0.2 GO:0061013 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of mRNA catabolic process(GO:0061013) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.1 0.3 GO:0009228 thiamine biosynthetic process(GO:0009228) thiamine-containing compound biosynthetic process(GO:0042724)
0.1 0.3 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.1 0.2 GO:0010269 response to selenium ion(GO:0010269)
0.1 0.5 GO:0016926 protein desumoylation(GO:0016926)
0.1 0.6 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.1 0.2 GO:0090646 mitochondrial tRNA processing(GO:0090646)
0.1 1.1 GO:0051017 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.1 0.5 GO:0043486 histone exchange(GO:0043486)
0.1 0.4 GO:0035067 histone H3-K9 demethylation(GO:0033169) negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.1 0.3 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.1 1.0 GO:0010207 photosystem II assembly(GO:0010207)
0.0 0.2 GO:0048480 stigma development(GO:0048480)
0.0 0.1 GO:0010353 hexokinase-dependent signaling(GO:0009747) response to trehalose(GO:0010353) regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.0 0.2 GO:0051196 regulation of coenzyme metabolic process(GO:0051196)
0.0 0.4 GO:0016584 nucleosome positioning(GO:0016584)
0.0 0.2 GO:0035627 ceramide transport(GO:0035627)
0.0 0.6 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.4 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.0 0.3 GO:0008614 pyridoxine metabolic process(GO:0008614)
0.0 0.3 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.4 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.0 0.1 GO:0048656 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 0.2 GO:0006225 UDP biosynthetic process(GO:0006225) ribonucleoside diphosphate biosynthetic process(GO:0009188) pyrimidine ribonucleoside diphosphate metabolic process(GO:0009193) pyrimidine ribonucleoside diphosphate biosynthetic process(GO:0009194) UDP metabolic process(GO:0046048)
0.0 0.2 GO:0080009 mRNA methylation(GO:0080009)
0.0 0.4 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.0 0.7 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.0 0.2 GO:2000574 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.0 0.4 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.1 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.0 0.1 GO:0071047 U1 snRNA 3'-end processing(GO:0034473) U5 snRNA 3'-end processing(GO:0034476) nuclear polyadenylation-dependent mRNA catabolic process(GO:0071042) polyadenylation-dependent mRNA catabolic process(GO:0071047)
0.0 0.2 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.0 0.2 GO:0051180 vitamin transport(GO:0051180)
0.0 0.3 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.0 0.2 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.2 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.4 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.0 0.2 GO:0019419 sulfate reduction(GO:0019419)
0.0 0.3 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.2 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.0 0.2 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.0 0.2 GO:0048464 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.0 0.3 GO:0009726 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.0 0.2 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.0 0.5 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.0 0.1 GO:0051098 regulation of binding(GO:0051098)
0.0 0.2 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.0 0.1 GO:0010541 acropetal auxin transport(GO:0010541)
0.0 0.2 GO:0009245 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.0 0.6 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.0 0.2 GO:0006000 fructose metabolic process(GO:0006000)
0.0 1.0 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.2 GO:0006567 threonine catabolic process(GO:0006567)
0.0 0.3 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.0 0.3 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.1 GO:2000736 regulation of stem cell population maintenance(GO:2000036) regulation of stem cell differentiation(GO:2000736)
0.0 0.1 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.0 0.3 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.0 0.2 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.4 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.0 0.4 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.1 GO:0018027 peptidyl-lysine dimethylation(GO:0018027)
0.0 1.1 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.2 GO:0015867 ADP transport(GO:0015866) ATP transport(GO:0015867)
0.0 0.2 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 0.2 GO:0051214 RNA virus induced gene silencing(GO:0051214)
0.0 0.4 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.6 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.5 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.1 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.0 0.1 GO:0046621 negative regulation of organ growth(GO:0046621)
0.0 1.2 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.2 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 0.3 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.1 GO:0048439 flower morphogenesis(GO:0048439)
0.0 0.6 GO:0031124 mRNA 3'-end processing(GO:0031124)
0.0 0.2 GO:0010088 phloem development(GO:0010088)
0.0 0.2 GO:0009610 response to symbiotic fungus(GO:0009610)
0.0 0.6 GO:0045727 positive regulation of translation(GO:0045727)
0.0 0.1 GO:0006527 arginine catabolic process(GO:0006527)
0.0 0.3 GO:0030497 fatty acid elongation(GO:0030497)
0.0 1.1 GO:0034605 cellular response to heat(GO:0034605)
0.0 0.2 GO:0042732 D-xylose metabolic process(GO:0042732)
0.0 0.1 GO:0010273 detoxification of copper ion(GO:0010273) stress response to copper ion(GO:1990169)
0.0 0.1 GO:0001578 microtubule bundle formation(GO:0001578)
0.0 0.0 GO:0015692 lead ion transport(GO:0015692) manganese ion homeostasis(GO:0055071)
0.0 0.3 GO:0030010 establishment of cell polarity(GO:0030010)
0.0 0.1 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.0 0.2 GO:0046337 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.0 0.3 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.0 0.2 GO:0006880 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.1 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.2 GO:0018126 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.5 GO:0046916 cellular transition metal ion homeostasis(GO:0046916)
0.0 0.1 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.5 GO:0035304 regulation of protein dephosphorylation(GO:0035304)
0.0 0.1 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.0 0.2 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 0.1 GO:0005980 glycogen catabolic process(GO:0005980)
0.0 0.4 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 0.6 GO:0072596 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.0 0.4 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.0 0.2 GO:0048465 petal development(GO:0048441) corolla development(GO:0048465)
0.0 0.5 GO:0010212 response to ionizing radiation(GO:0010212)
0.0 0.1 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.0 0.9 GO:0048481 plant ovule development(GO:0048481)
0.0 0.4 GO:0010346 secondary shoot formation(GO:0010223) shoot axis formation(GO:0010346)
0.0 0.1 GO:0009303 rRNA transcription(GO:0009303)
0.0 0.4 GO:0006885 regulation of pH(GO:0006885)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.2 GO:0034472 snRNA 3'-end processing(GO:0034472)
0.0 0.2 GO:0016106 sesquiterpenoid biosynthetic process(GO:0016106)
0.0 0.1 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.0 0.1 GO:0010601 positive regulation of auxin biosynthetic process(GO:0010601)
0.0 0.0 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.0 0.4 GO:0010109 regulation of photosynthesis(GO:0010109)
0.0 0.1 GO:0010052 guard cell differentiation(GO:0010052)
0.0 0.1 GO:0051446 positive regulation of meiotic cell cycle(GO:0051446)
0.0 0.1 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.4 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.3 GO:0010286 heat acclimation(GO:0010286)
0.0 0.1 GO:2000306 positive regulation of photomorphogenesis(GO:2000306)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0005652 nuclear lamina(GO:0005652)
0.1 0.7 GO:0001673 male germ cell nucleus(GO:0001673)
0.1 0.6 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130) clathrin coat of coated pit(GO:0030132)
0.1 1.1 GO:0009538 photosystem I reaction center(GO:0009538)
0.1 0.8 GO:0005884 actin filament(GO:0005884)
0.1 0.5 GO:0000812 Swr1 complex(GO:0000812)
0.1 0.6 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 0.3 GO:0070505 pollen coat(GO:0070505)
0.1 0.2 GO:0005775 vacuolar lumen(GO:0005775)
0.1 0.3 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.0 0.3 GO:0031082 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.0 0.2 GO:0030286 dynein complex(GO:0030286)
0.0 0.9 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 0.3 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.3 GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263)
0.0 0.3 GO:0034990 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0 4.6 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.1 GO:0089701 U2AF(GO:0089701)
0.0 0.5 GO:0005801 cis-Golgi network(GO:0005801)
0.0 0.1 GO:0000974 Prp19 complex(GO:0000974)
0.0 0.8 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.0 0.5 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.0 0.3 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.7 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 1.7 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.1 GO:0010369 chromocenter(GO:0010369)
0.0 0.5 GO:0000229 cytoplasmic chromosome(GO:0000229) plastid chromosome(GO:0009508)
0.0 0.3 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.3 GO:0000786 nucleosome(GO:0000786)
0.0 0.4 GO:0005762 mitochondrial large ribosomal subunit(GO:0005762)
0.0 1.2 GO:0016607 nuclear speck(GO:0016607)
0.0 0.2 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.7 GO:0010319 stromule(GO:0010319)
0.0 0.3 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.1 GO:0005682 U5 snRNP(GO:0005682)
0.0 0.2 GO:0048500 signal recognition particle(GO:0048500)
0.0 0.4 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.3 GO:1902554 serine/threonine protein kinase complex(GO:1902554)
0.0 0.4 GO:0010287 plastoglobule(GO:0010287)
0.0 0.0 GO:0031021 interphase microtubule organizing center(GO:0031021)
0.0 0.1 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 0.2 GO:0005880 nuclear microtubule(GO:0005880)
0.0 3.4 GO:0009535 chloroplast thylakoid membrane(GO:0009535)
0.0 0.2 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.7 GO:0005684 U2-type spliceosomal complex(GO:0005684)
0.0 0.3 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.2 GO:0005669 transcription factor TFIID complex(GO:0005669)
0.0 0.4 GO:0016604 nuclear body(GO:0016604)
0.0 0.1 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.1 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 0.7 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 3.3 GO:0004350 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.2 2.5 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.2 0.7 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.2 1.7 GO:0030291 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.2 0.9 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.2 0.5 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.1 1.2 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.9 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.1 0.5 GO:0070140 ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140)
0.1 0.8 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.1 0.7 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 0.5 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.1 0.2 GO:0008517 folic acid transporter activity(GO:0008517)
0.1 0.3 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.1 0.7 GO:0009916 alternative oxidase activity(GO:0009916)
0.1 0.3 GO:0004359 glutaminase activity(GO:0004359)
0.1 0.3 GO:0070678 preprotein binding(GO:0070678)
0.1 0.3 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 1.5 GO:0004022 alcohol dehydrogenase (NAD) activity(GO:0004022)
0.1 0.6 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.2 GO:0008936 nicotinamidase activity(GO:0008936)
0.1 0.5 GO:0001047 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.1 0.4 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.1 0.2 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.1 0.6 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.1 0.1 GO:0004127 cytidylate kinase activity(GO:0004127)
0.1 0.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.1 0.5 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.5 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.1 0.5 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.4 GO:0000257 nitrilase activity(GO:0000257) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles(GO:0016815) nitrile hydratase activity(GO:0018822) indole-3-acetonitrile nitrilase activity(GO:0080061)
0.1 0.2 GO:0004140 dephospho-CoA kinase activity(GO:0004140)
0.1 0.2 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.1 0.2 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.1 0.2 GO:0031071 cysteine desulfurase activity(GO:0031071)
0.1 0.2 GO:0052578 alpha-farnesene synthase activity(GO:0052578)
0.1 0.3 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.1 0.6 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.1 0.3 GO:0022842 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.1 0.4 GO:0015391 nucleobase:cation symporter activity(GO:0015391)
0.1 0.2 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.1 0.3 GO:0016426 tRNA (adenine) methyltransferase activity(GO:0016426)
0.1 0.3 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.1 0.2 GO:0052739 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.0 0.3 GO:0052654 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.0 0.4 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.2 GO:0035197 siRNA binding(GO:0035197)
0.0 0.2 GO:0035620 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.0 0.4 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.0 0.2 GO:0033862 UMP kinase activity(GO:0033862)
0.0 0.2 GO:0045502 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.0 0.1 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.0 0.5 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.1 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.0 0.3 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 0.2 GO:0070492 oligosaccharide binding(GO:0070492)
0.0 0.1 GO:0032131 alkylated DNA binding(GO:0032131)
0.0 0.2 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.0 0.1 GO:0046027 phospholipid:diacylglycerol acyltransferase activity(GO:0046027)
0.0 0.3 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.4 GO:0032453 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 0.2 GO:0008732 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.0 0.3 GO:0004084 branched-chain-amino-acid transaminase activity(GO:0004084)
0.0 0.6 GO:0031491 nucleosome binding(GO:0031491)
0.0 4.8 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.2 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.0 0.1 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.0 0.5 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 0.3 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.1 GO:0030628 pre-mRNA 3'-splice site binding(GO:0030628)
0.0 0.2 GO:0016724 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.0 0.2 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.2 GO:0031177 phosphopantetheine binding(GO:0031177)
0.0 0.1 GO:0016672 oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor(GO:0016672) glutathione dehydrogenase (ascorbate) activity(GO:0045174)
0.0 0.1 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.0 0.5 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 0.2 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.0 0.7 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.2 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.0 1.2 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 0.1 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.0 0.2 GO:0035198 miRNA binding(GO:0035198)
0.0 1.0 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.9 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.2 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.1 GO:0016262 protein N-acetylglucosaminyltransferase activity(GO:0016262)
0.0 0.3 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.0 0.4 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity(GO:0008441)
0.0 0.8 GO:0018024 histone-lysine N-methyltransferase activity(GO:0018024)
0.0 0.3 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.0 0.3 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.3 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.3 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.1 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.0 0.3 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.0 GO:0022858 L-alanine transmembrane transporter activity(GO:0015180) alanine transmembrane transporter activity(GO:0022858)
0.0 0.1 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 0.2 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.0 0.1 GO:0015089 high-affinity copper ion transmembrane transporter activity(GO:0015089)
0.0 0.3 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.2 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.3 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.2 GO:0019798 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.0 0.1 GO:0017091 AU-rich element binding(GO:0017091)
0.0 0.2 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.1 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.2 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 0.2 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.0 0.1 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.0 0.5 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.2 GO:0015217 ADP transmembrane transporter activity(GO:0015217)
0.0 1.0 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 0.1 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.1 GO:0051723 protein methylesterase activity(GO:0051723)
0.0 0.3 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 0.2 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.3 GO:0003727 single-stranded RNA binding(GO:0003727)
0.0 0.2 GO:0016251 obsolete general RNA polymerase II transcription factor activity(GO:0016251)
0.0 0.1 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.1 GO:0034979 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.0 0.2 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)
0.0 0.5 GO:0015036 disulfide oxidoreductase activity(GO:0015036)
0.0 0.2 GO:0004564 beta-fructofuranosidase activity(GO:0004564)
0.0 0.8 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.1 GO:0034511 U3 snoRNA binding(GO:0034511)
0.0 0.0 GO:0005247 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.0 0.4 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.3 GO:0000049 tRNA binding(GO:0000049)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 SIG PIP3 SIGNALING IN CARDIAC MYOCTES Genes related to PIP3 signaling in cardiac myocytes
0.1 0.3 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.1 0.2 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.0 0.4 PID CXCR4 PATHWAY CXCR4-mediated signaling events
0.0 0.4 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.0 0.2 PID HES HEY PATHWAY Notch-mediated HES/HEY network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 REACTOME L1CAM INTERACTIONS Genes involved in L1CAM interactions
0.1 0.3 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.1 0.2 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.1 0.3 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.0 0.1 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.0 0.1 REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS Genes involved in Synthesis of bile acids and bile salts
0.0 0.1 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.0 0.2 REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
0.0 0.1 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 0.0 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism