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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G76420
Z-value: 1.19
Transcription factors associated with AT1G76420
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G76420
|
AT1G76420 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CUC3 | arTal_v1_Chr1_-_28674045_28674045 | -0.69 | 6.7e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.32 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.98 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 1.95 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr3_+_8703220_8703220 Show fit | 1.81 |
AT3G24100.1
|
Uncharacterized protein family SERF |
|
| arTal_v1_Chr5_+_22893151_22893151 Show fit | 1.72 |
AT5G56540.1
|
arabinogalactan protein 14 |
|
| arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.66 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.61 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.60 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_8508957_8508957 Show fit | 1.59 |
AT5G24780.2
|
vegetative storage protein 1 |
|
| arTal_v1_Chr3_-_12451556_12451556 Show fit | 1.59 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G76420
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.0 | 3.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 3.0 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.0 | 2.8 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 2.5 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.0 | 2.5 | GO:0010114 | response to red light(GO:0010114) |
| 0.5 | 2.1 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.0 | 2.1 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.4 | 1.8 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.1 | 1.8 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 28.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 5.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.0 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 1.3 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.1 | 1.3 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 1.3 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 1.3 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.1 | 1.1 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.4 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 3.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 2.5 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.3 | 2.3 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 2.3 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.1 | 2.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.4 | 2.1 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 2.0 | GO:0016684 | peroxidase activity(GO:0004601) oxidoreductase activity, acting on peroxide as acceptor(GO:0016684) |
| 0.1 | 1.9 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 1.9 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.2 | 0.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.1 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.0 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.1 | 0.6 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME G1 PHASE | Genes involved in G1 Phase |
| 0.0 | 0.0 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |