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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G47270

Z-value: 0.79

Transcription factors associated with AT2G47270

Gene Symbol Gene ID Gene Info
AT2G47270
AT2G47270 transcription factor UPBEAT protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
UPB1arTal_v1_Chr2_-_19412328_194123280.582.8e-02Click!

Activity profile of AT2G47270 motif

Sorted Z-values of AT2G47270 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr2_+_19245591_19245684 1.72 AT2G46830.1
AT2G46830.2
CCA1
circadian clock associated 1
arTal_v1_Chr1_-_7086873_7086873 1.57 AT1G20440.1
COR47
cold-regulated 47
arTal_v1_Chr2_+_19246681_19246681 1.54 AT2G46830.3
CCA1
circadian clock associated 1
arTal_v1_Chr5_-_8358546_8358546 1.43 AT5G24470.1
PRR5
two-component response regulator-like protein
arTal_v1_Chr3_-_17475274_17475274 1.31 AT3G47420.3
AT3G47420.1
AT3G47420.2
G3Pp1
putative glycerol-3-phosphate transporter 1
arTal_v1_Chr5_+_6802282_6802282 0.87 AT5G20150.1
SPX1
SPX domain-containing protein 1
arTal_v1_Chr1_-_20385380_20385380 0.79 AT1G54570.1
PES1
Esterase/lipase/thioesterase family protein
arTal_v1_Chr5_-_5890218_5890260 0.64 AT5G17820.1
AT5G17820.2
AT5G17820
Peroxidase superfamily protein
arTal_v1_Chr5_-_17994584_17994722 0.64 AT5G44610.3
AT5G44610.2
AT5G44610.1
MAP18
microtubule-associated protein 18
arTal_v1_Chr2_-_14310608_14310608 0.63 AT2G33830.2
AT2G33830
Dormancy/auxin associated family protein
arTal_v1_Chr2_-_856725_856725 0.63 AT2G02950.1
PKS1
phytochrome kinase substrate 1
arTal_v1_Chr2_-_14310339_14310339 0.62 AT2G33830.1
AT2G33830
Dormancy/auxin associated family protein
arTal_v1_Chr4_-_14393381_14393381 0.58 AT4G29190.1
OZF2
Zinc finger C-x8-C-x5-C-x3-H type family protein
arTal_v1_Chr3_-_7130436_7130477 0.58 AT3G20440.1
AT3G20440.2
AT3G20440.3
EMB2729
Alpha amylase family protein
arTal_v1_Chr3_-_7709933_7709933 0.55 AT3G21890.1
BBX31
B-box type zinc finger family protein
arTal_v1_Chr2_+_859441_859441 0.54 AT2G02955.1
MEE12
maternal effect embryo arrest 12
arTal_v1_Chr1_-_6812757_6812757 0.52 AT1G19700.3
AT1G19700.1
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr3_-_2830649_2830655 0.50 AT3G09220.2
AT3G09220.1
LAC7
laccase 7
arTal_v1_Chr1_+_10236337_10236337 0.49 AT1G29280.1
WRKY65
WRKY DNA-binding protein 65
arTal_v1_Chr5_+_2167468_2167536 0.49 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
AT5G06980
hypothetical protein
arTal_v1_Chr1_-_6811994_6811994 0.47 AT1G19700.2
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr2_-_15725022_15725062 0.47 AT2G37450.2
AT2G37450.3
AT2G37450.1
UMAMIT13
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr5_-_6800903_6800977 0.46 AT5G20140.1
AT5G20140.2
HBP5
SOUL heme-binding family protein
arTal_v1_Chr1_+_19958380_19958380 0.45 AT1G53470.1
MSL4
mechanosensitive channel of small conductance-like 4
arTal_v1_Chr4_+_9205080_9205080 0.45 AT4G16270.1
AT4G16270
peroxidase superfamily protein
arTal_v1_Chr1_-_1433010_1433010 0.45 AT1G05010.1
EFE
ethylene-forming enzyme
arTal_v1_Chr3_-_1063103_1063234 0.44 AT3G04070.2
AT3G04070.1
NAC047
NAC domain containing protein 47
arTal_v1_Chr5_+_2167120_2167120 0.42 AT5G06980.1
AT5G06980
hypothetical protein
arTal_v1_Chr3_+_21123859_21123859 0.42 AT3G57070.1
AT3G57070
Glutaredoxin family protein
arTal_v1_Chr1_-_6812523_6812523 0.40 AT1G19700.4
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr3_+_673428_673428 0.38 AT3G02990.1
HSFA1E
heat shock transcription factor A1E
arTal_v1_Chr2_-_10429487_10429487 0.38 AT2G24550.1
AT2G24550
major centromere autoantigen B-like protein
arTal_v1_Chr2_+_15645407_15645491 0.37 AT2G37260.2
AT2G37260.3
TTG2
WRKY family transcription factor family protein
arTal_v1_Chr1_-_6813063_6813063 0.35 AT1G19700.5
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr5_-_19171263_19171263 0.35 AT5G47210.1
AT5G47210.2
AT5G47210.3
AT5G47210
Hyaluronan / mRNA binding family
arTal_v1_Chr5_+_22817480_22817480 0.34 AT5G56340.1
ATCRT1
RING/U-box superfamily protein
arTal_v1_Chr1_-_4766852_4766852 0.33 AT1G13940.1
AT1G13940.2
AT1G13940
T-box transcription factor, putative (DUF863)
arTal_v1_Chr2_-_14308367_14308367 0.32 AT2G33820.3
AT2G33820.2
AT2G33820.1
AT2G33820.4
MBAC1
Mitochondrial substrate carrier family protein
arTal_v1_Chr2_-_15641773_15641773 0.31 AT2G37240.1
AT2G37240
Thioredoxin superfamily protein
arTal_v1_Chr1_+_6814704_6814704 0.30 AT1G19710.1
AT1G19710
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr4_+_438991_438991 0.30 AT4G01020.1
AT4G01020
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
arTal_v1_Chr1_-_19954267_19954325 0.30 AT1G53450.1
AT1G53450.3
AT1G53450.2
AT1G53450
epstein-barr nuclear antigen
arTal_v1_Chr1_-_19956915_19956915 0.29 AT1G53460.1
AT1G53460
craniofacial development protein
arTal_v1_Chr2_+_7558916_7558977 0.29 AT2G17410.1
AT2G17410.2
AT2G17410
ARID/BRIGHT DNA-binding domain-containing protein
arTal_v1_Chr3_+_20695433_20695435 0.28 AT3G55740.1
AT3G55740.2
PROT2
proline transporter 2
arTal_v1_Chr2_+_487398_487398 0.28 AT2G02040.1
PTR2
peptide transporter 2
arTal_v1_Chr3_+_20695930_20695930 0.28 AT3G55740.3
PROT2
proline transporter 2
arTal_v1_Chr1_+_5615808_5615808 0.28 AT1G16440.1
RSH3
root hair specific 3
arTal_v1_Chr3_-_7131327_7131327 0.27 AT3G20450.1
AT3G20450
B-cell receptor-associated protein 31-like protein
arTal_v1_Chr1_-_8727212_8727212 0.27 AT1G24625.1
ZFP7
zinc finger protein 7
arTal_v1_Chr3_+_20698431_20698431 0.27 AT3G55750.1
AT3G55750
Ribosomal protein L35Ae family protein
arTal_v1_Chr5_-_9247540_9247540 0.26 AT5G26340.1
MSS1
Major facilitator superfamily protein
arTal_v1_Chr3_+_7134885_7134885 0.26 AT3G20460.1
AT3G20460
Major facilitator superfamily protein
arTal_v1_Chr2_-_799442_799591 0.26 AT2G02800.2
AT2G02800.1
APK2B
protein kinase 2B
arTal_v1_Chr3_+_17480521_17480521 0.25 AT3G47430.1
PEX11B
peroxin 11B
arTal_v1_Chr1_+_9996713_9996713 0.25 AT1G28440.1
HSL1
HAESA-like 1
arTal_v1_Chr2_-_18620451_18620451 0.25 AT2G45160.1
HAM1
GRAS family transcription factor
arTal_v1_Chr5_-_19172956_19172956 0.25 AT5G47220.1
ERF2
ethylene responsive element binding factor 2
arTal_v1_Chr2_+_15644811_15644811 0.23 AT2G37260.1
TTG2
WRKY family transcription factor family protein
arTal_v1_Chr1_+_20387058_20387058 0.22 AT1G54575.1
AT1G54575
hypothetical protein
arTal_v1_Chr2_+_8080354_8080354 0.22 AT2G18630.2
AT2G18630.1
AT2G18630
transmembrane protein, putative (DUF677)
arTal_v1_Chr5_+_16675582_16675868 0.22 AT5G41700.5
AT5G41700.1
AT5G41700.3
AT5G41700.4
AT5G41700.2
UBC8
ubiquitin conjugating enzyme 8
arTal_v1_Chr1_-_8532262_8532262 0.21 AT1G24120.1
ARL1
ARG1-like 1
arTal_v1_Chr1_+_20386809_20386809 0.21 AT1G54575.2
AT1G54575
hypothetical protein
arTal_v1_Chr3_+_2833346_2833346 0.20 AT3G09230.1
MYB1
myb domain protein 1
arTal_v1_Chr3_+_19168672_19168672 0.20 AT3G51670.1
AT3G51670
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
arTal_v1_Chr2_-_18801383_18801471 0.19 AT2G45640.1
AT2G45640.2
SAP18
SIN3 associated polypeptide P18
arTal_v1_Chr3_-_4214530_4214530 0.16 AT3G13100.1
AT3G13100.2
ABCC7
multidrug resistance-associated protein 7
arTal_v1_Chr4_+_2718170_2718212 0.16 AT4G05320.1
AT4G05320.5
AT4G05320.7
AT4G05320.8
AT4G05320.3
AT4G05320.4
UBQ10
polyubiquitin 10
arTal_v1_Chr4_+_2717977_2717980 0.16 AT4G05320.2
AT4G05320.6
UBQ10
polyubiquitin 10
arTal_v1_Chr1_+_21316730_21316747 0.16 AT1G57560.2
AT1G57560.1
MYB50
myb domain protein 50
arTal_v1_Chr4_-_5797375_5797420 0.16 AT4G09040.2
AT4G09040.1
AT4G09040
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr2_+_7559215_7559215 0.16 AT2G17410.3
AT2G17410
ARID/BRIGHT DNA-binding domain-containing protein
arTal_v1_Chr2_+_8293640_8293640 0.15 AT2G19130.1
AT2G19130
S-locus lectin protein kinase family protein
arTal_v1_Chr5_-_2946839_2946839 0.15 AT5G09460.1
AT5G09460
transcription factor bHLH143
arTal_v1_Chr2_+_18624264_18624354 0.14 AT2G45170.1
AT2G45170.2
ATG8E
AUTOPHAGY 8E
arTal_v1_Chr4_-_9203815_9203815 0.14 AT4G16265.2
NRPB9B
RNA polymerases M/15 Kd subunit
arTal_v1_Chr4_-_9201643_9201643 0.13 AT4G16260.2
AT4G16260.1
AT4G16260
Glycosyl hydrolase superfamily protein
arTal_v1_Chr5_+_19366133_19366154 0.12 AT5G47820.1
AT5G47820.2
FRA1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr2_+_10431260_10431260 0.11 AT2G24560.1
AT2G24560
GDSL-like Lipase/Acylhydrolase family protein
arTal_v1_Chr5_-_16085213_16085213 0.11 AT5G40240.3
AT5G40240.1
UMAMIT40
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr5_-_1114681_1114681 0.10 AT5G04110.4
AT5G04110.3
GYRB3
DNA GYRASE B3
arTal_v1_Chr3_+_21125725_21125725 0.10 AT3G57080.1
NRPE5
Eukaryotic rpb5 RNA polymerase subunit family protein
arTal_v1_Chr1_+_20389347_20389347 0.10 AT1G54580.1
ACP2
acyl carrier protein 2
arTal_v1_Chr1_+_26423874_26423874 0.09 AT1G70170.1
MMP
matrix metalloproteinase
arTal_v1_Chr1_+_26419894_26419894 0.08 AT1G70160.1
AT1G70160
zinc finger MYND domain protein
arTal_v1_Chr5_+_3144200_3144200 0.08 AT5G10050.1
AT5G10050
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr5_-_1115007_1115007 0.07 AT5G04110.2
AT5G04110.1
GYRB3
DNA GYRASE B3
arTal_v1_Chr5_-_16084957_16084957 0.06 AT5G40240.2
UMAMIT40
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr4_-_9204147_9204147 0.06 AT4G16265.1
NRPB9B
RNA polymerases M/15 Kd subunit
arTal_v1_Chr1_+_5614593_5614593 0.06 AT1G16430.1
AT1G16430
Surfeit locus protein 5 subunit 22 of Mediator complex
arTal_v1_Chr5_+_16677827_16677827 0.06 AT5G41710.1
AT5G41710

arTal_v1_Chr3_-_21121051_21121160 0.06 AT3G57060.1
AT3G57060.2
AT3G57060.3
AT3G57060
binding protein
arTal_v1_Chr2_+_10431412_10431412 0.06 AT2G24560.2
AT2G24560
GDSL-like Lipase/Acylhydrolase family protein
arTal_v1_Chr2_+_19336653_19336695 0.05 AT2G47070.1
AT2G47070.2
SPL1
squamosa promoter binding protein-like 1
arTal_v1_Chr2_-_10285012_10285098 0.04 AT2G24190.2
AT2G24190.1
SDR2
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr3_+_4180355_4180388 0.02 AT3G13060.2
AT3G13060.5
AT3G13060.1
AT3G13060.6
ECT5
evolutionarily conserved C-terminal region 5
arTal_v1_Chr2_+_8527175_8527175 0.02 AT2G19790.1
AT2G19790
SNARE-like superfamily protein
arTal_v1_Chr5_-_3139624_3139624 0.02 AT5G10030.5
TGA4
TGACG motif-binding factor 4
arTal_v1_Chr5_-_3140347_3140347 0.02 AT5G10030.4
AT5G10030.3
TGA4
TGACG motif-binding factor 4
arTal_v1_Chr3_-_4216302_4216302 0.01 AT3G13110.1
SERAT2%3B2
serine acetyltransferase 2;2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G47270

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 3.3 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.3 0.9 GO:0080040 positive regulation of cellular response to phosphate starvation(GO:0080040)
0.2 0.6 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.2 0.8 GO:0033306 phytol metabolic process(GO:0033306)
0.1 0.4 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.1 0.5 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.1 0.6 GO:0015824 proline transport(GO:0015824)
0.1 1.3 GO:0055062 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1 0.3 GO:1902475 L-alpha-amino acid transmembrane transport(GO:1902475)
0.1 0.4 GO:0070542 response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398)
0.1 0.2 GO:0001193 maintenance of transcriptional fidelity during DNA-templated transcription elongation(GO:0001192) maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter(GO:0001193)
0.1 0.6 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.6 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.0 0.3 GO:0034035 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.0 0.1 GO:0002215 defense response to nematode(GO:0002215)
0.0 2.1 GO:0010218 response to far red light(GO:0010218)
0.0 0.3 GO:0044375 regulation of peroxisome size(GO:0044375)
0.0 0.1 GO:0044259 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.0 1.6 GO:0010286 heat acclimation(GO:0010286)
0.0 0.3 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.2 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.0 0.2 GO:0010030 positive regulation of seed germination(GO:0010030)
0.0 0.2 GO:0006265 DNA topological change(GO:0006265)
0.0 0.1 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.0 0.2 GO:0048768 root hair cell tip growth(GO:0048768)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005776 autophagosome(GO:0005776)
0.0 0.3 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 2.0 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.3 GO:0000419 DNA-directed RNA polymerase V complex(GO:0000419)
0.0 0.8 GO:0010287 plastoglobule(GO:0010287)
0.0 0.5 GO:0044452 nucleolar part(GO:0044452)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 3.3 GO:0019904 protein domain specific binding(GO:0019904)
0.2 0.6 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.1 0.3 GO:0000064 L-ornithine transmembrane transporter activity(GO:0000064) azole transmembrane transporter activity(GO:1901474)
0.1 0.6 GO:0015193 L-proline transmembrane transporter activity(GO:0015193)
0.1 0.5 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.1 0.8 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.1 0.4 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.3 GO:0005355 glucose transmembrane transporter activity(GO:0005355)
0.0 0.3 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.0 0.6 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.4 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.0 1.4 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.2 GO:0043995 histone acetyltransferase activity (H4-K5 specific)(GO:0043995)
0.0 0.6 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.0 0.5 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 2.3 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.2 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 0.1 GO:0031177 phosphopantetheine binding(GO:0031177)
0.0 0.3 GO:0031386 protein tag(GO:0031386)
0.0 0.1 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.4 PID MTOR 4PATHWAY mTOR signaling pathway
0.0 0.2 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling