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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G11280

Z-value: 1.75

Transcription factors associated with AT3G11280

Gene Symbol Gene ID Gene Info
AT3G11280
AT3G11280 Duplicated homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT3G11280arTal_v1_Chr3_-_3534958_3534994-0.602.2e-02Click!

Activity profile of AT3G11280 motif

Sorted Z-values of AT3G11280 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr2_+_18347765_18347765 3.92 AT2G44460.2
BGLU28
beta glucosidase 28
arTal_v1_Chr2_+_18346306_18346306 3.82 AT2G44460.1
BGLU28
beta glucosidase 28
arTal_v1_Chr1_-_4682309_4682382 3.29 AT1G13650.3
AT1G13650.4
AT1G13650.2
AT1G13650.1
AT1G13650
hypothetical protein
arTal_v1_Chr1_+_24824356_24824496 2.71 AT1G66540.1
AT1G66540.2
AT1G66540
Cytochrome P450 superfamily protein
arTal_v1_Chr3_+_22216540_22216540 2.63 AT3G60140.2
AT3G60140.1
DIN2
Glycosyl hydrolase superfamily protein
arTal_v1_Chr1_-_19052582_19052582 2.48 AT1G51400.1
AT1G51400
Photosystem II 5 kD protein
arTal_v1_Chr1_+_26705420_26705428 2.47 AT1G70820.1
AT1G70820.2
AT1G70820
phosphoglucomutase, putative / glucose phosphomutase
arTal_v1_Chr2_-_15425129_15425129 2.43 AT2G36800.1
DOGT1
don-glucosyltransferase 1
arTal_v1_Chr4_-_10591546_10591633 2.43 AT4G19420.3
AT4G19420.2
AT4G19420.1
AT4G19420
Pectinacetylesterase family protein
arTal_v1_Chr3_+_1549446_1549446 2.35 AT3G05400.1
AT3G05400
Major facilitator superfamily protein
arTal_v1_Chr3_+_1549667_1549667 2.34 AT3G05400.2
AT3G05400
Major facilitator superfamily protein
arTal_v1_Chr4_-_9497313_9497313 2.34 AT4G16880.1
AT4G16880
Leucine-rich repeat (LRR) family protein
arTal_v1_Chr4_-_17672353_17672353 2.25 AT4G37610.1
BT5
BTB and TAZ domain protein 5
arTal_v1_Chr1_-_2287730_2287791 2.21 AT1G07440.2
AT1G07440.1
AT1G07440
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr3_+_22142856_22142856 2.13 AT3G59940.1
AT3G59940
Galactose oxidase/kelch repeat superfamily protein
arTal_v1_Chr4_+_2324878_2324878 2.10 AT4G04610.1
APR1
APS reductase 1
arTal_v1_Chr2_-_10155699_10155699 2.09 AT2G23840.1
AT2G23840
HNH endonuclease
arTal_v1_Chr2_-_10737800_10737800 2.07 AT2G25200.1
AT2G25200
hypothetical protein (DUF868)
arTal_v1_Chr3_+_3474922_3474922 2.07 AT3G11090.1
LBD21
LOB domain-containing protein 21
arTal_v1_Chr4_-_10590700_10590700 2.04 AT4G19420.4
AT4G19420
Pectinacetylesterase family protein
arTal_v1_Chr5_-_20801437_20801437 2.00 AT5G51190.1
AT5G51190
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_-_24558322_24558322 1.99 AT1G65970.1
TPX2
thioredoxin-dependent peroxidase 2
arTal_v1_Chr5_+_13689817_13689817 1.97 AT5G35490.1
MRU1
mto 1 responding up 1
arTal_v1_Chr3_-_197564_197564 1.97 AT3G01500.4
CA1
carbonic anhydrase 1
arTal_v1_Chr3_-_197974_197974 1.96 AT3G01500.1
CA1
carbonic anhydrase 1
arTal_v1_Chr3_-_198160_198160 1.95 AT3G01500.2
CA1
carbonic anhydrase 1
arTal_v1_Chr3_-_198664_198664 1.94 AT3G01500.3
CA1
carbonic anhydrase 1
arTal_v1_Chr2_+_239669_239669 1.92 AT2G01530.1
MLP329
MLP-like protein 329
arTal_v1_Chr3_-_3091766_3091766 1.92 AT3G10020.2
AT3G10020
plant/protein
arTal_v1_Chr1_-_5181374_5181402 1.90 AT1G15040.2
AT1G15040.1
GAT1_2.1
Class I glutamine amidotransferase-like superfamily protein
arTal_v1_Chr3_-_21293158_21293171 1.87 AT3G57520.2
AT3G57520.3
AT3G57520.1
SIP2
seed imbibition 2
arTal_v1_Chr1_+_10723454_10723454 1.83 AT1G30390.1
AT1G30390

arTal_v1_Chr5_+_5497524_5497524 1.78 AT5G16730.1
AT5G16730
weak chloroplast movement under blue light protein (DUF827)
arTal_v1_Chr4_+_13307461_13307461 1.73 AT4G26288.1
AT4G26288
hypothetical protein
arTal_v1_Chr3_-_3091922_3091922 1.73 AT3G10020.1
AT3G10020
plant/protein
arTal_v1_Chr1_-_25176230_25176230 1.72 AT1G67265.1
RTFL21
ROTUNDIFOLIA like 21
arTal_v1_Chr1_+_25041833_25041844 1.68 AT1G67070.1
AT1G67070.2
DIN9
Mannose-6-phosphate isomerase, type I
arTal_v1_Chr1_-_9864779_9864779 1.68 AT1G28230.1
PUP1
purine permease 1
arTal_v1_Chr5_+_9656949_9657000 1.62 AT5G27360.3
AT5G27360.2
AT5G27360.1
AT5G27360.4
SFP2
Major facilitator superfamily protein
arTal_v1_Chr3_+_229075_229075 1.61 AT3G01600.1
NAC044
NAC domain containing protein 44
arTal_v1_Chr1_-_12351229_12351318 1.58 AT1G33970.1
AT1G33970.2
AT1G33970.5
AT1G33970.4
AT1G33970.3
AT1G33970
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr3_+_18465318_18465318 1.56 AT3G49780.1
PSK4
phytosulfokine 4 precursor
arTal_v1_Chr1_-_12897675_12897675 1.55 AT1G35210.1
AT1G35210
hypothetical protein
arTal_v1_Chr3_-_19197334_19197356 1.55 AT3G51750.1
AT3G51750.2
AT3G51750.3
AT3G51750
hypothetical protein
arTal_v1_Chr3_-_11400332_11400332 1.55 AT3G29590.1
AT5MAT
HXXXD-type acyl-transferase family protein
arTal_v1_Chr1_+_30383561_30383561 1.55 AT1G80840.1
WRKY40
WRKY DNA-binding protein 40
arTal_v1_Chr1_-_6757420_6757420 1.55 AT1G19510.1
RL5
RAD-like 5
arTal_v1_Chr1_-_17719499_17719500 1.54 AT1G48030.1
AT1G48030.3
AT1G48030.4
AT1G48030.5
mtLPD1
mitochondrial lipoamide dehydrogenase 1
arTal_v1_Chr1_-_13698739_13698739 1.52 AT1G36370.1
SHM7
serine hydroxymethyltransferase 7
arTal_v1_Chr5_-_22030060_22030099 1.50 AT5G54250.2
AT5G54250.1
AT5G54250.4
AT5G54250.3
CNGC4
cyclic nucleotide-gated cation channel 4
arTal_v1_Chr3_-_6143310_6143310 1.50 AT3G17930.1
DAC
transmembrane protein
arTal_v1_Chr2_+_1679307_1679507 1.48 AT2G04790.10
AT2G04790.6
AT2G04790.5
AT2G04790.7
AT2G04790.9
AT2G04790.8
AT2G04790.13
AT2G04790.12
AT2G04790.11
AT2G04790.14
AT2G04790.15
AT2G04790.16
AT2G04790.4
AT2G04790.3
AT2G04790.1
AT2G04790.2
AT2G04790
PTB domain engulfment adapter
arTal_v1_Chr4_-_13958107_13958107 1.48 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr5_+_23003909_23003909 1.47 AT5G56870.1
BGAL4
beta-galactosidase 4
arTal_v1_Chr5_-_20208730_20208777 1.45 AT5G49740.3
AT5G49740.2
AT5G49740.1
FRO7
ferric reduction oxidase 7
arTal_v1_Chr1_-_17719141_17719141 1.43 AT1G48030.2
mtLPD1
mitochondrial lipoamide dehydrogenase 1
arTal_v1_Chr1_-_8310916_8310916 1.42 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
arTal_v1_Chr4_+_8218261_8218261 1.42 AT4G14270.2
AT4G14270
polyadenylate-binding protein interacting protein
arTal_v1_Chr2_+_16745628_16745653 1.41 AT2G40100.1
AT2G40100.2
LHCB4.3
light harvesting complex photosystem II
arTal_v1_Chr1_-_26474786_26474833 1.41 AT1G70290.2
AT1G70290.1
TPS8
trehalose-6-phosphatase synthase S8
arTal_v1_Chr5_-_18954692_18954692 1.40 AT5G46710.1
AT5G46710.2
AT5G46710.3
AT5G46710
PLATZ transcription factor family protein
arTal_v1_Chr4_+_13297695_13297803 1.40 AT4G26260.1
AT4G26260.2
MIOX4
myo-inositol oxygenase 4
arTal_v1_Chr2_-_16237280_16237280 1.39 AT2G38870.1
AT2G38870
Serine protease inhibitor, potato inhibitor I-type family protein
arTal_v1_Chr1_-_19690589_19690589 1.39 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
arTal_v1_Chr4_+_8218083_8218083 1.38 AT4G14270.1
AT4G14270
polyadenylate-binding protein interacting protein
arTal_v1_Chr4_-_7686873_7687006 1.37 AT4G13250.2
AT4G13250.1
NYC1
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr1_+_17863660_17863660 1.36 AT1G48330.1
AT1G48330
SsrA-binding protein
arTal_v1_Chr4_+_6905848_6905848 1.35 AT4G11360.1
RHA1B
RING-H2 finger A1B
arTal_v1_Chr1_+_17203685_17203685 1.33 AT1G46120.1
AT1G46120

arTal_v1_Chr5_-_15382071_15382071 1.27 AT5G38420.1
RBCS2B
Ribulose bisphosphate carboxylase (small chain) family protein
arTal_v1_Chr5_+_1130031_1130031 1.26 AT5G04140.2
GLU1
glutamate synthase 1
arTal_v1_Chr1_+_25042135_25042135 1.26 AT1G67070.3
DIN9
Mannose-6-phosphate isomerase, type I
arTal_v1_Chr4_+_13388290_13388348 1.26 AT4G26520.2
AT4G26520.1
AT4G26520.3
FBA7
Aldolase superfamily protein
arTal_v1_Chr5_+_1129785_1129785 1.26 AT5G04140.1
GLU1
glutamate synthase 1
arTal_v1_Chr2_-_11284211_11284272 1.26 AT2G26530.2
AT2G26530.1
AR781
AR781, pheromone receptor-like protein (DUF1645)
arTal_v1_Chr2_-_9741463_9741463 1.25 AT2G22880.1
AT2G22880
VQ motif-containing protein
arTal_v1_Chr4_+_8344349_8344349 1.24 AT4G14540.1
NF-YB3
nuclear factor Y, subunit B3
arTal_v1_Chr4_-_15424265_15424311 1.22 AT4G31880.2
AT4G31880.1
AT4G31880
transcriptional regulator
arTal_v1_Chr4_+_15608905_15609036 1.21 AT4G32330.3
AT4G32330.1
AT4G32330.2
AT4G32330.4
AT4G32330
TPX2 (targeting protein for Xklp2) protein family
arTal_v1_Chr5_-_26899736_26899736 1.21 AT5G67411.1
AT5G67411
GRAS family transcription factor
arTal_v1_Chr2_-_18778374_18778374 1.20 AT2G45560.3
AT2G45560.2
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
arTal_v1_Chr4_-_13729002_13729002 1.20 AT4G27450.1
AT4G27450
aluminum induced protein with YGL and LRDR motifs
arTal_v1_Chr4_+_9670763_9670881 1.18 AT4G17250.1
AT4G17250.2
AT4G17250.3
AT4G17250
transmembrane protein
arTal_v1_Chr5_-_21391561_21391561 1.18 AT5G52780.1
AT5G52780
transmembrane protein, putative (DUF3464)
arTal_v1_Chr2_-_18778676_18778676 1.18 AT2G45560.1
CYP76C1
cytochrome P450, family 76, subfamily C, polypeptide 1
arTal_v1_Chr1_+_27148261_27148261 1.18 AT1G72150.1
PATL1
PATELLIN 1
arTal_v1_Chr1_+_3008910_3008910 1.17 AT1G09310.1
AT1G09310
plant/protein (Protein of unknown function, DUF538)
arTal_v1_Chr1_-_11972580_11972580 1.17 AT1G33055.1
AT1G33055
hypothetical protein
arTal_v1_Chr2_+_9778759_9778877 1.16 AT2G22980.1
AT2G22980.2
AT2G22980.5
AT2G22980.4
AT2G22980.3
SCPL13
serine carboxypeptidase-like 13
arTal_v1_Chr5_+_26573964_26573964 1.15 AT5G66590.1
AT5G66590
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
arTal_v1_Chr5_-_14845685_14845685 1.15 AT5G37440.1
AT5G37440
Chaperone DnaJ-domain superfamily protein
arTal_v1_Chr5_-_22515458_22515458 1.15 AT5G55570.2
AT5G55570.1
AT5G55570
transmembrane protein
arTal_v1_Chr5_-_25804980_25804980 1.15 AT5G64550.1
AT5G64550
loricrin-like protein
arTal_v1_Chr2_-_17142485_17142485 1.14 AT2G41120.1
AT2G41120
DUF309 domain protein
arTal_v1_Chr1_+_11532199_11532199 1.14 AT1G32060.1
PRK
phosphoribulokinase
arTal_v1_Chr1_-_23669125_23669145 1.12 AT1G63800.1
AT1G63800.2
UBC5
ubiquitin-conjugating enzyme 5
arTal_v1_Chr4_-_1230164_1230164 1.11 AT4G02770.1
PSAD-1
photosystem I subunit D-1
arTal_v1_Chr2_+_17643334_17643334 1.11 AT2G42370.1
AT2G42370
hypothetical protein
arTal_v1_Chr1_+_24149208_24149208 1.11 AT1G65010.1
AT1G65010
WEB family protein (DUF827)
arTal_v1_Chr5_-_15378416_15378416 1.10 AT5G38410.3
AT5G38410.2
RBCS3B
Ribulose bisphosphate carboxylase (small chain) family protein
arTal_v1_Chr4_-_9390930_9390930 1.10 AT4G16680.1
AT4G16680
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr5_-_15378642_15378642 1.09 AT5G38410.1
RBCS3B
Ribulose bisphosphate carboxylase (small chain) family protein
arTal_v1_Chr5_+_9628990_9628990 1.09 AT5G27320.1
GID1C
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr5_+_23488745_23488748 1.08 AT5G58040.2
AT5G58040.1
FIP1[V]
FIP1[V]-like protein
arTal_v1_Chr1_+_410744_410748 1.07 AT1G02160.1
AT1G02160.2
AT1G02160
Cox19 family protein (CHCH motif)
arTal_v1_Chr1_+_11396402_11396402 1.07 AT1G31800.1
CYP97A3
cytochrome P450, family 97, subfamily A, polypeptide 3
arTal_v1_Chr1_+_7949476_7949476 1.07 AT1G22500.1
ATL15
RING/U-box superfamily protein
arTal_v1_Chr1_-_16838562_16838562 1.05 AT1G44350.1
ILL6
IAA-amino acid hydrolase ILR1-like 6
arTal_v1_Chr3_+_9352444_9352473 1.05 AT3G25690.4
AT3G25690.5
AT3G25690.6
CHUP1
Hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr4_+_8360996_8360996 1.05 AT4G14560.1
IAA1
indole-3-acetic acid inducible
arTal_v1_Chr5_-_4279493_4279493 1.04 AT5G13340.1
AT5G13340
arginine/glutamate-rich 1 protein
arTal_v1_Chr4_+_8517100_8517100 1.04 AT4G14870.1
SECE1
secE/sec61-gamma protein transport protein
arTal_v1_Chr4_+_13388719_13388719 1.04 AT4G26520.4
FBA7
Aldolase superfamily protein
arTal_v1_Chr1_-_6560561_6560561 1.04 AT1G18990.1
AT1G18990
myosin-binding protein, putative (Protein of unknown function, DUF593)
arTal_v1_Chr4_-_14012583_14012697 1.04 AT4G28290.1
AT4G28290.2
AT4G28290
hypothetical protein
arTal_v1_Chr4_+_17243583_17243583 1.03 AT4G36540.2
AT4G36540.1
BEE2
BR enhanced expression 2
arTal_v1_Chr3_+_9353010_9353010 1.03 AT3G25690.2
AT3G25690.3
CHUP1
Hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr5_+_6571472_6571502 1.03 AT5G19480.1
AT5G19480.4
AT5G19480.3
AT5G19480.2
AT5G19480
mediator of RNA polymerase II transcription subunit
arTal_v1_Chr5_-_22186633_22186633 1.03 AT5G54610.1
ANK
ankyrin
arTal_v1_Chr5_+_7470328_7470443 1.03 AT5G22500.1
AT5G22500.2
FAR1
fatty acid reductase 1
arTal_v1_Chr2_-_13631929_13631929 1.02 AT2G32020.1
AT2G32020
Acyl-CoA N-acyltransferases (NAT) superfamily protein
arTal_v1_Chr4_-_9391726_9391726 1.01 AT4G16680.2
AT4G16680
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr1_+_5058583_5058680 1.01 AT1G14700.4
AT1G14700.1
AT1G14700.3
AT1G14700.2
PAP3
purple acid phosphatase 3
arTal_v1_Chr4_+_16186791_16187078 1.00 AT4G33740.1
AT4G33740.4
AT4G33740.2
AT4G33740.3
AT4G33740.5
AT4G33740
myb-like protein X
arTal_v1_Chr3_+_3694956_3694956 0.98 AT3G11690.1
AT3G11690
hypothetical protein
arTal_v1_Chr3_+_9353271_9353271 0.97 AT3G25690.1
CHUP1
Hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr1_+_30150897_30151006 0.96 AT1G80160.3
AT1G80160.1
AT1G80160.2
GLYI7
Lactoylglutathione lyase / glyoxalase I family protein
arTal_v1_Chr1_+_2867203_2867271 0.95 AT1G08920.1
AT1G08920.2
AT1G08920.3
ESL1
ERD (early response to dehydration) six-like 1
arTal_v1_Chr3_-_5271984_5271984 0.95 AT3G15570.1
AT3G15570
Phototropic-responsive NPH3 family protein
arTal_v1_Chr3_+_22602816_22602910 0.95 AT3G61060.1
AT3G61060.2
PP2-A13
phloem protein 2-A13
arTal_v1_Chr4_+_7641378_7641378 0.95 AT4G13110.1
AT4G13110
BSD domain-containing protein
arTal_v1_Chr2_-_12999988_12999988 0.94 AT2G30500.3
NET4B
Kinase interacting (KIP1-like) family protein
arTal_v1_Chr3_+_14914008_14914008 0.94 AT3G42806.1
AT3G42806

arTal_v1_Chr5_+_14007812_14007812 0.93 AT5G35840.1
PHYC
phytochrome C
arTal_v1_Chr1_+_27118177_27118177 0.92 AT1G72060.1
AT1G72060
serine-type endopeptidase inhibitor
arTal_v1_Chr5_+_9658422_9658422 0.92 AT5G27360.5
SFP2
Major facilitator superfamily protein
arTal_v1_Chr5_+_16391836_16391836 0.92 AT5G40900.1
AT5G40900
Nucleotide-diphospho-sugar transferase family protein
arTal_v1_Chr4_+_17540490_17540490 0.91 AT4G37260.1
MYB73
myb domain protein 73
arTal_v1_Chr3_+_19051829_19051829 0.90 AT3G51325.1
AT3G51325
RING/U-box superfamily protein
arTal_v1_Chr1_-_130570_130577 0.90 AT1G01320.1
AT1G01320.3
AT1G01320.2
AT1G01320
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr2_+_16476198_16476216 0.89 AT2G39470.1
AT2G39470.2
AT2G39470.3
PnsL1
PsbP-like protein 2
arTal_v1_Chr2_-_1017222_1017222 0.89 AT2G03340.1
WRKY3
WRKY DNA-binding protein 3
arTal_v1_Chr5_+_20051829_20051829 0.89 AT5G49450.1
bZIP1
basic leucine-zipper 1
arTal_v1_Chr5_-_22332078_22332078 0.89 AT5G55040.2
AT5G55040.1
AT5G55040
DNA-binding bromodomain-containing protein
arTal_v1_Chr1_-_12516521_12516521 0.89 AT1G34315.1
AT1G34315
transmembrane protein
arTal_v1_Chr3_-_22278837_22278837 0.89 AT3G60270.1
AT3G60270
Cupredoxin superfamily protein
arTal_v1_Chr2_+_12814271_12814271 0.88 AT2G30020.1
AT2G30020
Protein phosphatase 2C family protein
arTal_v1_Chr1_-_26364759_26364878 0.88 AT1G70000.2
AT1G70000.1
AT1G70000
myb-like transcription factor family protein
arTal_v1_Chr3_-_11480033_11480033 0.88 AT3G29639.1
AT3G29639.2
AT3G29639
hypothetical protein
arTal_v1_Chr5_+_4757856_4757972 0.88 AT5G14740.3
AT5G14740.6
AT5G14740.1
AT5G14740.7
AT5G14740.8
AT5G14740.2
AT5G14740.4
AT5G14740.5
CA2
carbonic anhydrase 2
arTal_v1_Chr1_+_24057297_24057439 0.87 AT1G64770.1
AT1G64770.2
PnsB2
NDH-dependent cyclic electron flow 1
arTal_v1_Chr5_+_5927267_5927362 0.86 AT5G17910.1
AT5G17910.3
AT5G17910
cardiomyopathy-associated protein
arTal_v1_Chr4_-_13172904_13172904 0.86 AT4G25940.1
AT4G25940
ENTH/ANTH/VHS superfamily protein
arTal_v1_Chr5_-_22896734_22896734 0.86 AT5G56550.1
OXS3
oxidative stress 3
arTal_v1_Chr5_-_5522258_5522261 0.86 AT5G16780.2
AT5G16780.3
AT5G16780.1
DOT2
SART-1 family
arTal_v1_Chr4_-_3950602_3950602 0.86 AT4G06700.1
AT4G06700

arTal_v1_Chr2_-_1364788_1364788 0.85 AT2G04090.1
AT2G04090
MATE efflux family protein
arTal_v1_Chr2_+_9695832_9695832 0.85 AT2G22790.1
AT2G22790
hypothetical protein
arTal_v1_Chr5_-_16855741_16855741 0.85 AT5G42190.1
AT5G42190
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
arTal_v1_Chr1_-_11116195_11116195 0.84 AT1G31130.1
AT1G31130
polyadenylate-binding protein 1-B-binding protein
arTal_v1_Chr1_+_7554671_7554840 0.84 AT1G21560.2
AT1G21560.3
AT1G21560.6
AT1G21560.4
AT1G21560.5
AT1G21560.1
AT1G21560
hypothetical protein
arTal_v1_Chr2_-_13000825_13000825 0.83 AT2G30500.1
AT2G30500.2
NET4B
Kinase interacting (KIP1-like) family protein
arTal_v1_Chr1_+_24057063_24057063 0.83 AT1G64770.3
PnsB2
NDH-dependent cyclic electron flow 1
arTal_v1_Chr5_+_4758921_4758921 0.82 AT5G14740.9
CA2
carbonic anhydrase 2
arTal_v1_Chr5_+_23152174_23152319 0.82 AT5G57150.4
AT5G57150.2
AT5G57150.3
AT5G57150.5
AT5G57150.1
AT5G57150
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr1_+_22829921_22830017 0.82 AT1G61810.2
AT1G61810.1
AT1G61810.3
AT1G61810.4
BGLU45
beta-glucosidase 45
arTal_v1_Chr3_-_23242274_23242274 0.82 AT3G62860.2
AT3G62860.1
AT3G62860
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr2_-_19044955_19044955 0.81 AT2G46400.1
WRKY46
WRKY DNA-binding protein 46
arTal_v1_Chr5_+_5927841_5927841 0.81 AT5G17910.2
AT5G17910
cardiomyopathy-associated protein
arTal_v1_Chr4_-_367274_367274 0.81 AT4G00880.1
AT4G00880
SAUR-like auxin-responsive protein family
arTal_v1_Chr3_+_11527756_11527756 0.81 AT3G29670.1
PMAT2
HXXXD-type acyl-transferase family protein
arTal_v1_Chr2_+_9219252_9219252 0.81 AT2G21530.1
AT2G21530
SMAD/FHA domain-containing protein
arTal_v1_Chr3_-_18892508_18892508 0.81 AT3G50820.1
PSBO2
photosystem II subunit O-2
arTal_v1_Chr5_+_25213386_25213386 0.81 AT5G62780.1
AT5G62780
Chaperone DnaJ-domain superfamily protein
arTal_v1_Chr4_+_18006288_18006288 0.81 AT4G38490.1
AT4G38490
transmembrane protein
arTal_v1_Chr4_+_15602721_15602721 0.81 AT4G32320.1
APX6
ascorbate peroxidase 6
arTal_v1_Chr2_+_7782712_7782712 0.80 AT2G17920.1
AT2G17920
nucleic acid binding / zinc ion binding protein
arTal_v1_Chr5_+_7942908_7943046 0.80 AT5G23570.2
AT5G23570.3
AT5G23570.1
AT5G23570.4
SGS3
XS domain-containing protein / XS zinc finger domain-containing protein-like protein
arTal_v1_Chr5_-_763322_763322 0.80 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase
arTal_v1_Chr1_+_22423894_22423894 0.79 AT1G60900.1
AT1G60900
U2 snRNP auxilliary factor, large subunit, splicing factor
arTal_v1_Chr2_-_10727272_10727272 0.79 AT2G25180.1
RR12
response regulator 12
arTal_v1_Chr3_+_3102074_3102074 0.79 AT3G10060.1
AT3G10060
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
arTal_v1_Chr1_-_23801720_23801799 0.78 AT1G64110.1
AT1G64110.3
AT1G64110.2
DAA1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr1_-_27646743_27646743 0.78 AT1G73540.1
NUDT21
nudix hydrolase homolog 21
arTal_v1_Chr4_-_13247926_13247984 0.77 AT4G26140.5
AT4G26140.4
AT4G26140.9
AT4G26140.8
AT4G26140.6
AT4G26140.7
AT4G26140.2
AT4G26140.3
BGAL12
beta-galactosidase 12
arTal_v1_Chr3_-_1548679_1548679 0.77 AT3G05390.1
AT3G05390
S-adenosyl-L-methionine-dependent methyltransferase
arTal_v1_Chr2_-_16287967_16287990 0.77 AT2G39000.3
AT2G39000.2
AT2G39000.4
AT2G39000
Acyl-CoA N-acyltransferases (NAT) superfamily protein
arTal_v1_Chr3_+_16818347_16818347 0.77 AT3G45780.2
PHOT1
phototropin 1
arTal_v1_Chr3_+_16816721_16816721 0.77 AT3G45780.1
PHOT1
phototropin 1
arTal_v1_Chr5_+_9676334_9676334 0.77 AT5G27400.1
AT5G27410.2
AT5G27400
AT5G27410
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
arTal_v1_Chr2_-_13259552_13259552 0.77 AT2G31110.1
AT2G31110
trichome birefringence-like protein (DUF828)
arTal_v1_Chr3_+_10442608_10442608 0.76 AT3G28050.1
UMAMIT41
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr1_-_8653915_8653915 0.76 AT1G24400.1
LHT2
lysine histidine transporter 2
arTal_v1_Chr3_+_11191491_11191491 0.75 AT3G29240.1
AT3G29240
PPR containing protein (DUF179)
arTal_v1_Chr3_-_3608092_3608092 0.75 AT3G11450.1
AT3G11450
DnaJ and Myb-like DNA-binding domain-containing protein
arTal_v1_Chr3_+_11191263_11191263 0.75 AT3G29240.2
AT3G29240
PPR containing protein (DUF179)
arTal_v1_Chr4_-_7723989_7724070 0.75 AT4G13260.3
AT4G13260.2
AT4G13260.1
YUC2
Flavin-binding monooxygenase family protein
arTal_v1_Chr4_-_15974613_15974613 0.75 AT4G33110.1
AT4G33110
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr5_-_1374787_1374787 0.75 AT5G04760.1
AT5G04760
Duplicated homeodomain-like superfamily protein
arTal_v1_Chr4_-_9659576_9659576 0.74 AT4G17220.1
MAP70-5
microtubule-associated proteins 70-5

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G11280

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 GO:0090224 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
0.6 1.9 GO:0006057 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506)
0.6 2.5 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.6 7.9 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.6 4.8 GO:0009061 anaerobic respiration(GO:0009061)
0.6 1.7 GO:0010184 cytokinin transport(GO:0010184)
0.5 1.6 GO:0033530 raffinose metabolic process(GO:0033530)
0.5 1.1 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.4 2.1 GO:0019419 sulfate reduction(GO:0019419)
0.4 3.3 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.4 1.1 GO:0010343 singlet oxygen-mediated programmed cell death(GO:0010343)
0.3 1.4 GO:0060964 regulation of gene silencing by miRNA(GO:0060964)
0.3 1.0 GO:1903889 negative regulation of cell fate specification(GO:0009996) negative regulation of trichoblast fate specification(GO:0010062) negative regulation of plant epidermal cell differentiation(GO:1903889)
0.3 1.0 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.3 1.5 GO:0032410 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.3 1.4 GO:0019310 inositol catabolic process(GO:0019310)
0.3 2.1 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.2 0.7 GO:0035436 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.2 0.7 GO:0090143 nucleoid organization(GO:0090143)
0.2 0.6 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.2 1.6 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.2 0.8 GO:0046373 L-arabinose metabolic process(GO:0046373)
0.2 1.5 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.2 0.7 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.2 1.1 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.2 0.5 GO:0019695 choline metabolic process(GO:0019695)
0.2 1.7 GO:0015976 carbon utilization(GO:0015976)
0.2 8.7 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.2 4.0 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.2 0.7 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.2 0.8 GO:0042549 photosystem II stabilization(GO:0042549)
0.2 0.5 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.2 1.1 GO:0043066 apoptotic process(GO:0006915) regulation of apoptotic process(GO:0042981) negative regulation of apoptotic process(GO:0043066)
0.2 1.9 GO:0015749 monosaccharide transport(GO:0015749)
0.2 0.9 GO:0009584 detection of visible light(GO:0009584)
0.2 1.4 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.1 1.0 GO:0010018 far-red light signaling pathway(GO:0010018)
0.1 0.6 GO:0070676 intralumenal vesicle formation(GO:0070676)
0.1 1.9 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.1 1.4 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.1 1.1 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.1 4.3 GO:0009902 chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667)
0.1 2.3 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.1 0.6 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.1 0.2 GO:0060967 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.1 2.3 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.1 0.7 GO:0043447 alkane biosynthetic process(GO:0043447)
0.1 0.8 GO:0009745 sucrose mediated signaling(GO:0009745)
0.1 0.3 GO:0010055 atrichoblast differentiation(GO:0010055)
0.1 1.1 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.1 0.3 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.1 0.6 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.1 0.7 GO:0006597 spermine biosynthetic process(GO:0006597)
0.1 1.9 GO:2000032 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.1 0.6 GO:0046339 diacylglycerol metabolic process(GO:0046339)
0.1 0.6 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.1 0.5 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.1 0.4 GO:1900034 regulation of cellular response to heat(GO:1900034)
0.1 1.5 GO:0080060 integument development(GO:0080060)
0.1 0.3 GO:0010481 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.1 0.8 GO:0015804 neutral amino acid transport(GO:0015804)
0.1 2.5 GO:0010193 response to ozone(GO:0010193)
0.1 0.3 GO:0031573 intra-S DNA damage checkpoint(GO:0031573)
0.1 0.7 GO:2000779 regulation of double-strand break repair(GO:2000779)
0.1 3.1 GO:0098754 detoxification(GO:0098754)
0.1 0.3 GO:0010219 regulation of vernalization response(GO:0010219)
0.1 0.4 GO:0009558 embryo sac cellularization(GO:0009558)
0.1 0.9 GO:0060260 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.1 1.0 GO:0052249 virus induced gene silencing(GO:0009616) modulation by symbiont of RNA levels in host(GO:0052018) modulation of RNA levels in other organism involved in symbiotic interaction(GO:0052249)
0.1 0.5 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.1 0.8 GO:1900457 regulation of brassinosteroid mediated signaling pathway(GO:1900457)
0.1 0.3 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.1 0.4 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.1 0.7 GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c(GO:0006122)
0.1 0.8 GO:0080113 regulation of chlorophyll biosynthetic process(GO:0010380) regulation of seed growth(GO:0080113)
0.1 0.8 GO:0015977 carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253)
0.1 0.3 GO:1990170 stress response to cadmium ion(GO:1990170)
0.1 0.3 GO:0043407 negative regulation of MAP kinase activity(GO:0043407) negative regulation of MAPK cascade(GO:0043409)
0.1 0.1 GO:0045827 negative regulation of isoprenoid metabolic process(GO:0045827)
0.1 0.6 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.1 0.2 GO:0035865 cellular response to potassium ion(GO:0035865)
0.1 1.6 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.1 3.1 GO:0007131 reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825)
0.1 0.3 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.1 0.9 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.1 0.2 GO:0090549 response to carbon starvation(GO:0090549)
0.1 0.2 GO:0071836 nectar secretion(GO:0071836)
0.1 0.9 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.1 1.0 GO:0009306 protein secretion(GO:0009306)
0.1 0.2 GO:0018065 protein-cofactor linkage(GO:0018065)
0.1 1.1 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 1.5 GO:0006284 base-excision repair(GO:0006284)
0.0 0.1 GO:0035404 histone-serine phosphorylation(GO:0035404) histone H3-S10 phosphorylation(GO:0043987)
0.0 0.6 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.8 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 0.9 GO:0033238 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.0 2.9 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.4 GO:0009610 response to symbiotic fungus(GO:0009610)
0.0 1.1 GO:0009767 photosynthetic electron transport chain(GO:0009767)
0.0 0.1 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.0 0.2 GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000447)
0.0 0.3 GO:2000114 regulation of establishment of cell polarity(GO:2000114)
0.0 0.2 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.3 GO:0046835 carbohydrate phosphorylation(GO:0046835)
0.0 0.5 GO:0032544 plastid translation(GO:0032544)
0.0 1.1 GO:0009960 endosperm development(GO:0009960)
0.0 0.7 GO:0010207 photosystem II assembly(GO:0010207)
0.0 0.4 GO:0006949 syncytium formation(GO:0006949)
0.0 1.1 GO:0007062 sister chromatid cohesion(GO:0007062)
0.0 0.2 GO:0019566 arabinose metabolic process(GO:0019566)
0.0 0.3 GO:0010439 regulation of glucosinolate biosynthetic process(GO:0010439)
0.0 0.3 GO:0030307 positive regulation of cell growth(GO:0030307)
0.0 1.1 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.5 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.9 GO:0051607 defense response to virus(GO:0051607)
0.0 0.2 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.0 0.9 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 1.5 GO:0009626 plant-type hypersensitive response(GO:0009626)
0.0 0.3 GO:0048658 anther wall tapetum development(GO:0048658)
0.0 0.7 GO:0051260 protein homooligomerization(GO:0051260)
0.0 0.2 GO:2000037 regulation of stomatal complex patterning(GO:2000037)
0.0 1.2 GO:0010286 heat acclimation(GO:0010286)
0.0 0.1 GO:0016598 protein arginylation(GO:0016598)
0.0 0.3 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.6 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.0 0.2 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.6 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.2 GO:0015693 magnesium ion transport(GO:0015693)
0.0 0.4 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.0 0.7 GO:0006749 glutathione metabolic process(GO:0006749)
0.0 0.0 GO:0006808 regulation of nitrogen utilization(GO:0006808)
0.0 0.3 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.2 GO:2001289 lipid X metabolic process(GO:2001289)
0.0 0.5 GO:0050918 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.0 0.7 GO:0007031 peroxisome organization(GO:0007031)
0.0 0.5 GO:0018393 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.0 0.2 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.8 GO:0009631 cold acclimation(GO:0009631)
0.0 0.9 GO:0009809 lignin biosynthetic process(GO:0009809)
0.0 0.7 GO:0009698 phenylpropanoid metabolic process(GO:0009698)
0.0 0.3 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 0.1 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.4 GO:0032543 mitochondrial translation(GO:0032543)
0.0 0.1 GO:0009304 tRNA transcription(GO:0009304)
0.0 0.6 GO:0010224 response to UV-B(GO:0010224)
0.0 0.9 GO:0015979 photosynthesis(GO:0015979)
0.0 0.2 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015) inositol lipid-mediated signaling(GO:0048017)
0.0 1.9 GO:0045944 positive regulation of transcription from RNA polymerase II promoter(GO:0045944)
0.0 1.7 GO:0009751 response to salicylic acid(GO:0009751)
0.0 0.2 GO:0006574 valine catabolic process(GO:0006574)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 3.0 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.2 8.2 GO:0010319 stromule(GO:0010319)
0.2 0.6 GO:0030093 chloroplast photosystem I(GO:0030093)
0.2 0.5 GO:0005775 vacuolar lumen(GO:0005775)
0.1 2.0 GO:0005880 nuclear microtubule(GO:0005880)
0.1 1.1 GO:0009538 photosystem I reaction center(GO:0009538)
0.1 1.7 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.1 0.7 GO:0016363 nuclear matrix(GO:0016363)
0.1 4.8 GO:0010287 plastoglobule(GO:0010287)
0.1 1.0 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.1 0.3 GO:0045334 clathrin-coated endocytic vesicle(GO:0045334)
0.1 0.8 GO:0009517 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.1 1.5 GO:0009986 cell surface(GO:0009986)
0.1 0.2 GO:0034457 Mpp10 complex(GO:0034457)
0.1 0.3 GO:0000839 ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.1 0.3 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.1 0.2 GO:0060293 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.1 0.3 GO:0005776 autophagosome(GO:0005776)
0.1 1.4 GO:0009523 photosystem II(GO:0009523)
0.1 0.2 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.1 2.8 GO:0005875 microtubule associated complex(GO:0005875)
0.0 0.5 GO:1902562 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.2 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.0 0.6 GO:0000815 ESCRT III complex(GO:0000815)
0.0 0.4 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 14.8 GO:0009579 thylakoid(GO:0009579)
0.0 0.8 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 2.6 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 1.9 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 1.2 GO:0016592 mediator complex(GO:0016592)
0.0 0.6 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.1 GO:0000811 GINS complex(GO:0000811)
0.0 0.4 GO:0005762 mitochondrial large ribosomal subunit(GO:0005762)
0.0 0.2 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.0 0.2 GO:0035861 site of double-strand break(GO:0035861)
0.0 0.0 GO:1990298 bub1-bub3 complex(GO:1990298)
0.0 0.2 GO:0009508 plastid chromosome(GO:0009508)
0.0 0.8 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.1 GO:0034990 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0 0.6 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.3 GO:0031307 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.2 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.0 0.2 GO:0030686 90S preribosome(GO:0030686)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.6 GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.8 2.5 GO:0016041 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.8 2.4 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.6 2.6 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.6 1.9 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.6 1.9 GO:0004557 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.6 3.0 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.5 2.1 GO:0009973 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.4 1.5 GO:0008301 DNA binding, bending(GO:0008301)
0.4 1.1 GO:0010331 gibberellin binding(GO:0010331)
0.4 2.2 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
0.4 1.1 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.3 1.3 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.3 9.4 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.3 1.4 GO:0050113 inositol oxygenase activity(GO:0050113)
0.3 1.4 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.3 0.8 GO:0010242 oxygen evolving activity(GO:0010242)
0.2 0.7 GO:0004528 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.2 2.2 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.2 0.7 GO:0009924 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.2 0.6 GO:0003995 acyl-CoA dehydrogenase activity(GO:0003995)
0.2 2.0 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.2 2.1 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.2 1.0 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.2 2.3 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.2 8.0 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.2 0.6 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.2 4.0 GO:0016168 chlorophyll binding(GO:0016168)
0.2 2.3 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.2 0.5 GO:0019779 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.2 1.1 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.1 0.7 GO:0016768 spermine synthase activity(GO:0016768)
0.1 1.3 GO:0048256 flap endonuclease activity(GO:0048256)
0.1 1.5 GO:0002020 protease binding(GO:0002020)
0.1 9.4 GO:0015144 carbohydrate transmembrane transporter activity(GO:0015144)
0.1 0.6 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.1 1.0 GO:0008199 ferric iron binding(GO:0008199)
0.1 0.8 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.1 0.8 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.1 0.6 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 2.1 GO:0015925 galactosidase activity(GO:0015925)
0.1 1.8 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.1 0.8 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.1 0.8 GO:0032453 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 0.4 GO:0030544 Hsp70 protein binding(GO:0030544)
0.1 0.3 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.1 0.7 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 0.3 GO:0004335 galactokinase activity(GO:0004335)
0.1 1.7 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.1 0.8 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 0.7 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.5 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.1 0.6 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.1 0.6 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.1 0.5 GO:0003988 acetyl-CoA C-acyltransferase activity(GO:0003988)
0.1 0.8 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.1 0.9 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.1 0.8 GO:0004084 branched-chain-amino-acid transaminase activity(GO:0004084)
0.0 0.4 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 0.4 GO:0017022 myosin binding(GO:0017022)
0.0 0.2 GO:0015367 oxoglutarate:malate antiporter activity(GO:0015367)
0.0 0.3 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.0 0.3 GO:0042299 lupeol synthase activity(GO:0042299)
0.0 0.8 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:0035174 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.0 0.1 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.0 0.2 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.7 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.0 0.4 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.0 0.7 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 2.6 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.2 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.0 0.3 GO:0015198 peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198)
0.0 0.2 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 1.4 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.1 GO:0016463 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.0 0.9 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.0 0.1 GO:0004057 arginyltransferase activity(GO:0004057)
0.0 0.1 GO:0016312 inositol bisphosphate phosphatase activity(GO:0016312)
0.0 0.2 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 1.5 GO:0008094 DNA-dependent ATPase activity(GO:0008094)
0.0 2.7 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.1 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.0 1.2 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.5 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.1 GO:0050302 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 2.6 GO:0000989 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.0 0.4 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 1.0 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 0.2 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 0.7 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.6 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.2 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.0 0.8 GO:0008080 N-acetyltransferase activity(GO:0008080)
0.0 0.3 GO:0030276 clathrin binding(GO:0030276)
0.0 2.2 GO:0005516 calmodulin binding(GO:0005516)
0.0 0.5 GO:0001159 core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.0 1.3 GO:0003779 actin binding(GO:0003779)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 6.8 PID CMYB PATHWAY C-MYB transcription factor network
0.7 2.0 PID AURORA A PATHWAY Aurora A signaling
0.2 0.6 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.1 0.6 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.1 0.1 NABA SECRETED FACTORS Genes encoding secreted soluble factors
0.0 0.2 PID ATR PATHWAY ATR signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 9.5 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.4 1.2 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.2 1.0 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.2 0.8 REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA Genes involved in Processing of Capped Intron-Containing Pre-mRNA
0.2 0.6 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.2 0.6 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.0 0.2 REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND Genes involved in Removal of the Flap Intermediate from the C-strand