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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G27920_AT5G41315

Z-value: 0.11

Transcription factors associated with AT3G27920_AT5G41315

Gene Symbol Gene ID Gene Info
AT3G27920
AT3G27920 myb domain protein 0
AT5G41315
AT5G41315 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
GL3arTal_v1_Chr5_+_16529455_165294550.612.0e-02Click!
MYB0arTal_v1_Chr3_-_10363607_103636070.029.5e-01Click!

Activity profile of AT3G27920_AT5G41315 motif

Sorted Z-values of AT3G27920_AT5G41315 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr1_-_26796529_26796532 0.07 AT1G71030.1
AT1G71030.2
MYBL2
MYB-like 2
arTal_v1_Chr2_+_12959199_12959289 0.05 AT2G30410.2
AT2G30410.3
KIS
tubulin folding cofactor A (KIESEL)
arTal_v1_Chr4_-_219781_219926 0.04 AT4G00480.2
AT4G00480.3
AT4G00480.1
ATMYC1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_-_3919170_3919170 0.03 AT3G12280.2
RBR1
retinoblastoma-related 1
arTal_v1_Chr3_-_3919359_3919359 0.03 AT3G12280.1
RBR1
retinoblastoma-related 1
arTal_v1_Chr2_+_12958116_12958116 0.03 AT2G30410.1
KIS
tubulin folding cofactor A (KIESEL)
arTal_v1_Chr1_+_147043_147153 0.02 AT1G01380.2
AT1G01380.1
AT1G01380.3
ETC1
Homeodomain-like superfamily protein
arTal_v1_Chr5_-_1267416_1267416 0.02 AT5G04470.1
SIM
cyclin-dependent protein kinase inhibitor
arTal_v1_Chr2_+_15645407_15645491 0.01 AT2G37260.2
AT2G37260.3
TTG2
WRKY family transcription factor family protein
arTal_v1_Chr3_-_18882172_18882237 0.01 AT3G50790.2
AT3G50790.1
AT3G50790
esterase/lipase/thioesterase family protein
arTal_v1_Chr5_+_21307016_21307016 0.01 AT5G52510.1
SCL8
SCARECROW-like 8
arTal_v1_Chr1_+_30037376_30037431 0.01 AT1G79840.1
AT1G79840.5
AT1G79840.4
GL2
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein
arTal_v1_Chr3_+_22473983_22473983 0.00 AT3G60830.1
ARP7
actin-related protein 7
arTal_v1_Chr3_-_18883033_18883033 0.00 AT3G50800.1
AT3G50800
hypothetical protein
arTal_v1_Chr4_+_460395_460479 0.00 AT4G01060.3
AT4G01060.2
AT4G01060.1
CPL3
CAPRICE-like MYB3
arTal_v1_Chr4_+_11211244_11211244 0.00 AT4G20960.1
PyrD
Cytidine/deoxycytidylate deaminase family protein
arTal_v1_Chr2_+_15644811_15644811 0.00 AT2G37260.1
TTG2
WRKY family transcription factor family protein
arTal_v1_Chr5_+_10320114_10320205 0.00 AT5G28350.1
AT5G28350.2
AT5G28350
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
arTal_v1_Chr2_-_11173278_11173278 0.00 AT2G26250.1
KCS10
3-ketoacyl-CoA synthase 10

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G27920_AT5G41315

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:2000653 guard cell fate commitment(GO:0010377) regulation of G1/S transition of mitotic cell cycle(GO:2000045) regulation of genetic imprinting(GO:2000653)
0.0 0.1 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 0.1 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)