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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G46590

Z-value: 1.89

Transcription factors associated with AT3G46590

Gene Symbol Gene ID Gene Info
AT3G46590
AT3G46590 TRF-like 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TRFL1arTal_v1_Chr3_+_17152683_171527750.195.0e-01Click!

Activity profile of AT3G46590 motif

Sorted Z-values of AT3G46590 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr1_-_22363854_22363854 2.05 AT1G60750.1
AT1G60750
NAD(P)-linked oxidoreductase superfamily protein
arTal_v1_Chr5_-_18954692_18954692 1.85 AT5G46710.1
AT5G46710.2
AT5G46710.3
AT5G46710
PLATZ transcription factor family protein
arTal_v1_Chr3_+_16297979_16297979 1.83 AT3G44750.2
HDA3
histone deacetylase 3
arTal_v1_Chr3_+_16297656_16297656 1.80 AT3G44750.1
HDA3
histone deacetylase 3
arTal_v1_Chr2_-_19315241_19315343 1.75 AT2G47000.7
AT2G47000.1
AT2G47000.2
AT2G47000.4
AT2G47000.3
ABCB4
ATP binding cassette subfamily B4
arTal_v1_Chr1_-_6506542_6506542 1.71 AT1G18850.1
AT1G18850
hypothetical protein
arTal_v1_Chr5_-_19974530_19974530 1.68 AT5G49270.1
SHV2
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
arTal_v1_Chr1_+_5457084_5457084 1.67 AT1G15870.1
AT1G15870
Mitochondrial glycoprotein family protein
arTal_v1_Chr5_+_22394550_22394550 1.67 AT5G55200.1
MGE1
Co-chaperone GrpE family protein
arTal_v1_Chr4_-_2517217_2517217 1.66 AT4G04940.1
AT4G04940
transducin family protein / WD-40 repeat family protein
arTal_v1_Chr4_-_2516703_2516703 1.60 AT4G04940.2
AT4G04940
transducin family protein / WD-40 repeat family protein
arTal_v1_Chr2_-_19315013_19315071 1.60 AT2G47000.5
AT2G47000.6
ABCB4
ATP binding cassette subfamily B4
arTal_v1_Chr3_-_6403392_6403392 1.57 AT3G18600.1
AT3G18600
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr4_-_13486858_13486858 1.55 AT4G26780.1
AR192
Co-chaperone GrpE family protein
arTal_v1_Chr3_+_7887276_7887286 1.52 AT3G22310.1
AT3G22310.2
PMH1
putative mitochondrial RNA helicase 1
arTal_v1_Chr3_-_18290672_18290672 1.52 AT3G49320.1
AT3G49320.2
AT3G49320
Metal-dependent protein hydrolase
arTal_v1_Chr1_-_27026363_27026363 1.50 AT1G71850.1
AT1G71850
Ubiquitin carboxyl-terminal hydrolase family protein
arTal_v1_Chr2_-_8501294_8501294 1.47 AT2G19670.1
PRMT1A
protein arginine methyltransferase 1A
arTal_v1_Chr4_+_7975064_7975064 1.45 AT4G13750.1
NOV
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
arTal_v1_Chr5_+_22873666_22873668 1.43 AT5G56500.2
AT5G56500.1
Cpn60beta3
TCP-1/cpn60 chaperonin family protein
arTal_v1_Chr3_-_4229752_4229752 1.38 AT3G13150.1
AT3G13150
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr3_+_8668772_8668772 1.37 AT3G23990.1
HSP60
heat shock protein 60
arTal_v1_Chr5_+_2928173_2928173 1.35 AT5G09420.1
TOC64-V
translocon at the outer membrane of chloroplasts 64-V
arTal_v1_Chr1_-_883599_883599 1.34 AT1G03530.1
NAF1
nuclear assembly factor 1
arTal_v1_Chr5_+_22714471_22714471 1.32 AT5G56090.1
COX15
cytochrome c oxidase 15
arTal_v1_Chr3_+_20578922_20578922 1.28 AT3G55510.1
AT3G55510.2
RBL
Noc2p family
arTal_v1_Chr4_-_2745635_2745635 1.26 AT4G05410.1
YAO
Transducin/WD40 repeat-like superfamily protein
arTal_v1_Chr2_-_14078744_14078772 1.22 AT2G33210.2
AT2G33210.1
HSP60-2
heat shock protein 60-2
arTal_v1_Chr3_+_16138375_16138375 1.19 AT3G44550.2
FAR5
fatty acid reductase 5
arTal_v1_Chr4_+_13557974_13557974 1.17 AT4G27010.1
AT4G27010.2
EMB2788
ribosome 60S biogenesis amino-terminal protein
arTal_v1_Chr1_-_9246652_9246652 1.16 AT1G26740.1
AT1G26740
Ribosomal L32p protein family
arTal_v1_Chr1_-_28020049_28020059 1.14 AT1G74560.3
AT1G74560.1
NRP1
NAP1-related protein 1
arTal_v1_Chr1_-_29680757_29680757 1.14 AT1G78930.1
AT1G78930
Mitochondrial transcription termination factor family protein
arTal_v1_Chr3_+_6740695_6740695 1.14 AT3G19440.2
AT3G19440.1
AT3G19440
Pseudouridine synthase family protein
arTal_v1_Chr4_-_17902160_17902282 1.14 AT4G38150.2
AT4G38150.3
AT4G38150.1
AT4G38150
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_+_8195776_8195776 1.13 AT1G23100.1
AT1G23100
GroES-like family protein
arTal_v1_Chr5_+_2975436_2975436 1.12 AT5G09590.1
MTHSC70-2
mitochondrial HSO70 2
arTal_v1_Chr5_-_20823299_20823411 1.10 AT5G51220.3
AT5G51220.2
AT5G51220.1
AT5G51220
ubiquinol-cytochrome C chaperone family protein
arTal_v1_Chr3_+_16137576_16137576 1.07 AT3G44550.1
FAR5
fatty acid reductase 5
arTal_v1_Chr4_+_7453196_7453201 1.06 AT4G12600.1
AT4G12600.2
AT4G12600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
arTal_v1_Chr3_-_8608297_8608297 1.05 AT3G23830.2
AT3G23830.1
GRP4
glycine-rich RNA-binding protein 4
arTal_v1_Chr1_+_22911159_22911159 1.05 AT1G61990.1
AT1G61990.2
AT1G61990
Mitochondrial transcription termination factor family protein
arTal_v1_Chr3_+_10076809_10076819 1.04 AT3G27280.1
AT3G27280.2
PHB4
prohibitin 4
arTal_v1_Chr1_-_22400312_22400413 1.04 AT1G60850.3
AT1G60850.2
AT1G60850.4
AT1G60850.1
ATRPAC42
DNA-directed RNA polymerase family protein
arTal_v1_Chr3_-_4565335_4565335 1.03 AT3G13860.1
HSP60-3A
heat shock protein 60-3A
arTal_v1_Chr1_-_27927962_27927962 0.98 AT1G74260.1
PUR4
purine biosynthesis 4
arTal_v1_Chr3_+_5179358_5179392 0.98 AT3G15352.3
AT3G15352.2
AT3G15352.1
AT3G15352.4
COX17
cytochrome c oxidase 17
arTal_v1_Chr3_-_21092141_21092169 0.96 AT3G56990.3
AT3G56990.2
AT3G56990.1
EDA7
embryo sac development arrest 7
arTal_v1_Chr1_+_26089030_26089030 0.96 AT1G69410.1
ELF5A-3
eukaryotic elongation factor 5A-3
arTal_v1_Chr3_+_5050195_5050195 0.95 AT3G15000.1
RIP1
cobalt ion binding protein
arTal_v1_Chr3_+_8648669_8648674 0.95 AT3G23940.1
AT3G23940.2
AT3G23940
dehydratase family
arTal_v1_Chr5_-_14926325_14926333 0.91 AT5G37570.1
AT5G37570.2
AT5G37570
Pentatricopeptide repeat (PPR-like) superfamily protein
arTal_v1_Chr3_+_19723350_19723350 0.91 AT3G53230.1
AtCDC48B
ATPase, AAA-type, CDC48 protein
arTal_v1_Chr5_+_1428597_1428597 0.90 AT5G04895.1
ABO6
DEA(D/H)-box RNA helicase family protein
arTal_v1_Chr4_+_13489806_13489835 0.90 AT4G26800.2
AT4G26800.1
AT4G26800
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr5_-_20676702_20676702 0.86 AT5G50810.1
TIM8
translocase inner membrane subunit 8
arTal_v1_Chr4_-_13194124_13194124 0.86 AT4G25990.1
AT4G25990.3
CIL
CCT motif family protein
arTal_v1_Chr1_+_23227532_23227532 0.83 AT1G62720.1
NG1
Pentatricopeptide repeat (PPR-like) superfamily protein
arTal_v1_Chr1_-_25095526_25095638 0.83 AT1G67120.2
AT1G67120.1
AT1G67120
midasin-like protein
arTal_v1_Chr5_+_15895682_15895682 0.82 AT5G39710.1
EMB2745
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr1_+_28085753_28085753 0.82 AT1G74750.3
AT1G74750.2
AT1G74750
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr4_-_14086882_14086882 0.80 AT4G28510.1
PHB1
prohibitin 1
arTal_v1_Chr1_+_28086800_28086800 0.79 AT1G74750.4
AT1G74750
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr5_-_4415622_4415622 0.78 AT5G13680.1
ABO1
IKI3 family protein
arTal_v1_Chr1_+_29616919_29616919 0.77 AT1G78770.1
APC6
anaphase promoting complex 6
arTal_v1_Chr1_-_7004432_7004432 0.76 AT1G20200.1
EMB2719
PAM domain (PCI/PINT associated module) protein
arTal_v1_Chr4_-_13690478_13690538 0.75 AT4G27340.2
AT4G27340.3
AT4G27340.1
AT4G27340
Met-10+ like family protein
arTal_v1_Chr1_+_5317973_5317973 0.74 AT1G15480.1
AT1G15480
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr1_-_12104660_12104680 0.72 AT1G33390.2
AT1G33390.1
FAS4
RNA helicase family protein
arTal_v1_Chr4_-_13193620_13193620 0.71 AT4G25990.2
CIL
CCT motif family protein
arTal_v1_Chr1_+_9854517_9854517 0.68 AT1G28210.3
AT1G28210.1
AT1G28210.2
ATJ1
DNAJ heat shock family protein
arTal_v1_Chr1_+_28085948_28085948 0.68 AT1G74750.1
AT1G74750
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr5_-_21263151_21263151 0.66 AT5G52380.1
AT5G52380
VASCULAR-RELATED NAC-DOMAIN 6
arTal_v1_Chr4_-_13106864_13106864 0.65 AT4G25730.1
AT4G25730
FtsJ-like methyltransferase family protein
arTal_v1_Chr1_-_9528878_9528878 0.65 AT1G27435.1
AT1G27435
hypothetical protein
arTal_v1_Chr5_-_2578310_2578310 0.64 AT5G08040.1
TOM5
mitochondrial import receptor subunit TOM5-like protein
arTal_v1_Chr5_-_7394280_7394280 0.63 AT5G22330.1
RIN1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr3_-_4274436_4274487 0.62 AT3G13235.3
AT3G13235.1
AT3G13235.2
DDI1
ubiquitin family protein
arTal_v1_Chr2_-_3527460_3527500 0.61 AT2G07690.2
AT2G07690.1
MCM5
Minichromosome maintenance (MCM2/3/5) family protein
arTal_v1_Chr1_-_22093060_22093060 0.59 AT1G59990.2
EMB3108
DEA(D/H)-box RNA helicase family protein
arTal_v1_Chr1_-_22093385_22093385 0.57 AT1G59990.1
EMB3108
DEA(D/H)-box RNA helicase family protein
arTal_v1_Chr5_+_6310058_6310058 0.56 AT5G18920.1
AT5G18920.2
AT5G18920
Cox19-like CHCH family protein
arTal_v1_Chr3_+_10538005_10538105 0.56 AT3G28270.2
AT3G28270.1
AT3G28270
transmembrane protein, putative (DUF677)
arTal_v1_Chr4_-_6756595_6756595 0.56 AT4G11060.1
MTSSB
mitochondrially targeted single-stranded DNA binding protein
arTal_v1_Chr5_-_7633380_7633380 0.53 AT5G22840.1
AT5G22840
Protein kinase superfamily protein
arTal_v1_Chr4_+_897547_897547 0.53 AT4G02040.1
AT4G02040
hypothetical protein
arTal_v1_Chr5_+_23428601_23428601 0.53 AT5G57820.1
AT5G57820
zinc ion binding protein
arTal_v1_Chr1_-_6483646_6483646 0.52 AT1G18800.1
NRP2
NAP1-related protein 2
arTal_v1_Chr1_+_4615767_4615767 0.52 AT1G13460.1
AT1G13460.2
AT1G13460
Protein phosphatase 2A regulatory B subunit family protein
arTal_v1_Chr3_-_11299695_11299695 0.51 AT3G29400.1
EXO70E1
exocyst subunit exo70 family protein E1
arTal_v1_Chr1_-_10645935_10645935 0.51 AT1G30240.1
AT1G30240
proline-, glutamic acid/leucine-rich protein
arTal_v1_Chr1_-_21418115_21418115 0.50 AT1G57820.1
AT1G57820.3
VIM1
Zinc finger (C3HC4-type RING finger) family protein
arTal_v1_Chr1_-_10646195_10646195 0.50 AT1G30240.2
AT1G30240
proline-, glutamic acid/leucine-rich protein
arTal_v1_Chr3_+_16271511_16271511 0.50 AT3G44720.1
ADT4
arogenate dehydratase 4
arTal_v1_Chr4_+_13490090_13490090 0.49 AT4G26800.3
AT4G26800
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr3_-_2324568_2324568 0.49 AT3G07290.1
AT3G07290
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_+_11783543_11783543 0.48 AT1G32580.1
AT1G32580
plastid developmental protein DAG
arTal_v1_Chr3_+_22492811_22492811 0.48 AT3G60870.1
AHL18
AT-hook motif nuclear-localized protein 18
arTal_v1_Chr4_+_13354992_13354992 0.47 AT4G26430.1
CSN6B
COP9 signalosome subunit 6B
arTal_v1_Chr4_-_7243228_7243228 0.46 AT4G12090.1
AT4G12090
Cornichon family protein
arTal_v1_Chr2_-_18219559_18219559 0.45 AT2G44020.1
AT2G44020
Mitochondrial transcription termination factor family protein
arTal_v1_Chr5_+_11380102_11380102 0.45 AT5G30495.1
AT5G30495
Fcf2 pre-rRNA processing protein
arTal_v1_Chr2_+_12582477_12582477 0.44 AT2G29260.1
AT2G29260
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr1_-_8855874_8855874 0.44 AT1G25260.1
AT1G25260
Ribosomal protein L10 family protein
arTal_v1_Chr3_-_13634029_13634029 0.43 AT3G33072.1
AT3G33072

arTal_v1_Chr2_-_9508895_9508895 0.43 AT2G22400.1
AT2G22400
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr4_-_1075893_1075930 0.42 AT4G02450.2
AT4G02450.1
AT4G02450
HSP20-like chaperones superfamily protein
arTal_v1_Chr2_+_13361502_13361502 0.41 AT2G31340.1
emb1381
embryo defective 1381
arTal_v1_Chr4_+_13142088_13142164 0.41 AT4G25845.1
AT4G25850.2
AT4G25845
ORP4B
oxysterol-binding 4B-like protein
OSBP(oxysterol binding protein)-related protein 4B
arTal_v1_Chr3_-_545602_545602 0.40 AT3G02570.1
MEE31
Mannose-6-phosphate isomerase, type I
arTal_v1_Chr3_+_9475350_9475412 0.40 AT3G25890.2
AT3G25890.1
CRF11
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr3_-_9652936_9652936 0.40 AT3G26340.1
AT3G26340
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
arTal_v1_Chr1_-_2977002_2977002 0.40 AT1G09210.1
CRT1b
calreticulin 1b
arTal_v1_Chr2_-_13965531_13965531 0.40 AT2G32920.1
PDIL2-3
PDI-like 2-3
arTal_v1_Chr4_-_6252293_6252314 0.40 AT4G09980.2
AT4G09980.1
EMB1691
Methyltransferase MT-A70 family protein
arTal_v1_Chr5_+_6112738_6112738 0.39 AT5G18440.2
AT5G18440.1
NUFIP
GATA zinc finger protein
arTal_v1_Chr1_-_2060242_2060429 0.39 AT1G06710.1
AT1G06710.19
AT1G06710.16
AT1G06710.14
AT1G06710.17
AT1G06710.18
AT1G06710.15
AT1G06710.12
AT1G06710.11
AT1G06710.13
AT1G06710.10
AT1G06710.6
AT1G06710.5
AT1G06710.2
AT1G06710.8
AT1G06710.3
AT1G06710.4
AT1G06710.9
AT1G06710.7
AT1G06710
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr2_-_3379885_3379885 0.39 AT2G07704.1
AT2G07704

arTal_v1_Chr1_+_22343585_22343655 0.38 AT1G60670.2
AT1G60670.4
AT1G60670.3
AT1G60670.5
AT1G60670.1
AT1G60670
hypothetical protein (DUF3755)
arTal_v1_Chr2_+_17765178_17765178 0.37 AT2G42650.1
AT2G42650
Ribosomal protein L1p/L10e family
arTal_v1_Chr1_-_21417937_21417937 0.37 AT1G57820.2
VIM1
Zinc finger (C3HC4-type RING finger) family protein
arTal_v1_Chr5_+_11379907_11379907 0.37 AT5G30495.2
AT5G30495
Fcf2 pre-rRNA processing protein
arTal_v1_Chr3_+_1021146_1021146 0.36 AT3G03950.2
AT3G03950.3
ECT1
evolutionarily conserved C-terminal region 1
arTal_v1_Chr4_+_18499753_18499753 0.35 AT4G39860.2
AT4G39860
hematological/neurological-like protein
arTal_v1_Chr4_-_15727977_15727977 0.34 AT4G32605.1
AT4G32605
Mitochondrial glycoprotein family protein
arTal_v1_Chr1_-_1718909_1718909 0.34 AT1G05720.1
AT1G05720
selenoprotein family protein
arTal_v1_Chr3_+_812396_812402 0.34 AT3G03420.1
AT3G03420.2
AT3G03420
Ku70-binding family protein
arTal_v1_Chr4_+_18499486_18499486 0.33 AT4G39860.4
AT4G39860
hematological/neurological-like protein
arTal_v1_Chr3_+_1021405_1021405 0.33 AT3G03950.1
ECT1
evolutionarily conserved C-terminal region 1
arTal_v1_Chr3_+_20028052_20028052 0.33 AT3G54090.1
FLN1
fructokinase-like 1
arTal_v1_Chr3_-_5015342_5015342 0.33 AT3G14900.1
EMB3120
hypothetical protein
arTal_v1_Chr5_-_16317291_16317291 0.33 AT5G40770.1
PHB3
prohibitin 3
arTal_v1_Chr3_-_19618507_19618507 0.32 AT3G52910.1
GRF4
growth-regulating factor 4
arTal_v1_Chr2_+_3514668_3514774 0.32 AT2G07680.2
AT2G07680.3
AT2G07680.4
AT2G07680.1
AT2G07680.5
ABCC13
multidrug resistance-associated protein 11
arTal_v1_Chr3_-_3325046_3325085 0.31 AT3G10640.2
AT3G10640.1
VPS60.1
SNF7 family protein
arTal_v1_Chr5_-_18886960_18886960 0.31 AT5G46550.1
AT5G46550
DNA-binding bromodomain-containing protein
arTal_v1_Chr4_+_7214577_7214710 0.31 AT4G12040.1
AT4G12040.2
SAP7
A20/AN1-like zinc finger family protein
arTal_v1_Chr2_-_9179166_9179166 0.29 AT2G21440.1
AT2G21440
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr4_+_16431916_16431916 0.29 AT4G34360.1
AT4G34360
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr2_+_3618058_3618058 0.27 AT2G08986.1
AT2G08986
hypothetical protein
arTal_v1_Chr1_-_28223785_28223785 0.25 AT1G75200.1
AT1G75200
flavodoxin family protein / radical SAM domain-containing protein
arTal_v1_Chr2_+_16869189_16869334 0.24 AT2G40400.1
AT2G40400.2
AT2G40400.3
AT2G40400
DUF399 family protein, putative (DUF399 and DUF3411)
arTal_v1_Chr4_-_18437258_18437258 0.24 AT4G39740.1
HCC2
Thioredoxin superfamily protein
arTal_v1_Chr3_-_17340543_17340543 0.24 AT3G47080.1
AT3G47080
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr2_-_14880655_14880655 0.22 AT2G35345.1
AT2G35345
hypothetical protein
arTal_v1_Chr2_+_14668440_14668456 0.20 AT2G34780.2
AT2G34780.1
MEE22
maternal effect embryo arrest 22
arTal_v1_Chr4_-_10870651_10870651 0.19 AT4G20090.1
EMB1025
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_-_1022108_1022108 0.19 AT1G03980.2
AT1G03980.3
AT1G03980.4
PCS2
phytochelatin synthase 2
arTal_v1_Chr4_-_10870382_10870382 0.19 AT4G20090.2
EMB1025
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr4_+_18498202_18498216 0.18 AT4G39860.1
AT4G39860.3
AT4G39860
hematological/neurological-like protein
arTal_v1_Chr3_-_14196865_14196865 0.18 AT3G41762.1
AT3G41762
hypothetical protein
arTal_v1_Chr2_-_19696821_19696821 0.18 AT2G48160.1
AT2G48160.2
AT2G48160
Tudor/PWWP/MBT domain-containing protein
arTal_v1_Chr1_+_3631_3631 0.17 AT1G01010.1
NAC001
NAC domain containing protein 1
arTal_v1_Chr3_-_10043066_10043066 0.16 AT3G27190.1
UKL2
uridine kinase-like 2
arTal_v1_Chr4_-_13336230_13336231 0.16 AT4G26370.2
AT4G26370.3
AT4G26370.1
AT4G26370
antitermination NusB domain-containing protein
arTal_v1_Chr3_+_14914008_14914008 0.15 AT3G42806.1
AT3G42806

arTal_v1_Chr1_+_3862399_3862399 0.14 AT1G11475.1
NRPB10
RNA polymerases N / 8 kDa subunit
arTal_v1_Chr5_-_9635174_9635174 0.13 AT5G27330.1
AT5G27330
Prefoldin chaperone subunit family protein
arTal_v1_Chr5_-_7189696_7189696 0.13 AT5G21140.1
emb1379
embryo defective 1379
arTal_v1_Chr1_-_5629013_5629013 0.13 AT1G16480.1
AT1G16480
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr1_-_24818744_24818744 0.12 AT1G66520.1
AT1G66520.2
pde194
formyltransferase
arTal_v1_Chr4_+_7287803_7287803 0.12 AT4G12240.1
AT4G12240
zinc finger (C2H2 type) family protein
arTal_v1_Chr2_-_14320714_14320714 0.12 AT2G33847.1
AT2G33847
hypothetical protein
arTal_v1_Chr4_-_12587384_12587458 0.12 AT4G24270.3
AT4G24270.1
AT4G24270.4
AT4G24270.2
EMB140
EMBRYO DEFECTIVE 140
arTal_v1_Chr1_-_5628656_5628656 0.12 AT1G16480.2
AT1G16480
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr2_-_1704045_1704045 0.11 AT2G04845.3
AT2G04845.2
AT2G04845.1
AT2G04845.5
AT2G04845.4
AT2G04845
Acyl-CoA N-acyltransferases (NAT) superfamily protein
arTal_v1_Chr2_+_18149197_18149311 0.11 AT2G43810.2
AT2G43810.3
AT2G43810.1
LSM6B
Small nuclear ribonucleoprotein family protein
arTal_v1_Chr3_+_11073646_11073646 0.11 AT3G29090.1
PME31
pectin methylesterase 31
arTal_v1_Chr2_+_15233500_15233500 0.10 AT2G36330.2
AT2G36330.1
AT2G36330
Uncharacterized protein family (UPF0497)
arTal_v1_Chr4_-_10689671_10689748 0.10 AT4G19640.2
AT4G19640.3
AT4G19640.1
ARA7
Ras-related small GTP-binding family protein
arTal_v1_Chr1_+_15081952_15081952 0.09 AT1G40104.1
AT1G40104
hypothetical protein
arTal_v1_Chr1_+_17451553_17451582 0.09 AT1G47530.1
AT1G47530.2
AT1G47530
MATE efflux family protein
arTal_v1_Chr3_-_6815403_6815403 0.08 AT3G19615.1
AT3G19615
beta-1,4-xylosidase
arTal_v1_Chr1_+_3948714_3948714 0.08 AT1G11710.1
AT1G11710.2
AT1G11710
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_-_23267221_23267221 0.08 AT1G62830.1
LDL1
LSD1-like 1
arTal_v1_Chr2_+_1025_1025 0.07 AT2G01008.1
AT2G01008
maternal effect embryo arrest protein
arTal_v1_Chr2_+_18374162_18374292 0.06 AT2G44500.1
AT2G44500.2
AT2G44500
O-fucosyltransferase family protein
arTal_v1_Chr2_+_14669007_14669007 0.05 AT2G34780.3
MEE22
maternal effect embryo arrest 22
arTal_v1_Chr4_+_4960143_4960143 0.05 AT4G08078.1
AT4G08078

arTal_v1_Chr3_-_1315045_1315045 0.05 AT3G04800.1
TIM23-3
translocase inner membrane subunit 23-3
arTal_v1_Chr2_+_14669164_14669164 0.04 AT2G34780.4
MEE22
maternal effect embryo arrest 22
arTal_v1_Chr5_+_8749680_8749680 0.04 AT5G25250.1
FLOT1
SPFH/Band 7/PHB domain-containing membrane-associated protein family
arTal_v1_Chr3_-_2225465_2225522 0.04 AT3G07030.3
AT3G07030.2
AT3G07030.4
AT3G07030
Alba DNA/RNA-binding protein
arTal_v1_Chr1_-_30280359_30280359 0.04 AT1G80530.1
AT1G80530
Major facilitator superfamily protein
arTal_v1_Chr2_-_14320555_14320555 0.04 AT2G33847.2
AT2G33847
hypothetical protein
arTal_v1_Chr3_-_4663363_4663363 0.04 AT3G14070.1
CAX9
cation exchanger 9
arTal_v1_Chr3_-_9918810_9918810 0.03 AT3G26910.2
AT3G26910.1
AT3G26910.3
AT3G26910
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr1_+_29173409_29173409 0.03 AT1G77630.1
LYM3
Peptidoglycan-binding LysM domain-containing protein
arTal_v1_Chr5_+_23967217_23967315 0.02 AT5G59430.2
AT5G59430.4
AT5G59430.3
TRP1
telomeric repeat binding protein 1
arTal_v1_Chr2_-_12165929_12166039 0.01 AT2G28450.1
AT2G28450.2
AT2G28450
zinc finger (CCCH-type) family protein
arTal_v1_Chr2_+_8293640_8293640 0.00 AT2G19130.1
AT2G19130
S-locus lectin protein kinase family protein
arTal_v1_Chr3_-_2225254_2225254 0.00 AT3G07030.1
AT3G07030.5
AT3G07030
Alba DNA/RNA-binding protein
arTal_v1_Chr3_+_18759348_18759463 0.00 AT3G50550.1
AT3G50550.2
AT3G50550
hypothetical protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G46590

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 3.3 GO:0060919 auxin influx(GO:0060919)
0.6 2.4 GO:0000491 small nucleolar ribonucleoprotein complex assembly(GO:0000491)
0.4 1.1 GO:0017062 respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551) mitochondrial respiratory chain complex III biogenesis(GO:0097033)
0.3 1.0 GO:0045901 positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905)
0.3 0.9 GO:1903513 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.3 1.1 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.3 0.8 GO:0080178 5-carbamoylmethyl uridine residue modification(GO:0080178)
0.2 2.7 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.2 6.9 GO:0042026 protein refolding(GO:0042026)
0.2 0.9 GO:0090309 regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.2 1.5 GO:0019079 viral genome replication(GO:0019079)
0.2 1.7 GO:0070129 regulation of mitochondrial translation(GO:0070129) positive regulation of mitochondrial translation(GO:0070131)
0.2 1.7 GO:0016444 somatic cell DNA recombination(GO:0016444)
0.2 4.6 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.2 0.5 GO:0032000 positive regulation of fatty acid beta-oxidation(GO:0032000) positive regulation of lipid catabolic process(GO:0050996)
0.2 2.3 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.1 0.4 GO:0006056 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.1 3.6 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.1 1.3 GO:0060321 acceptance of pollen(GO:0060321)
0.1 0.6 GO:0051095 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.1 1.7 GO:0010215 cellulose microfibril organization(GO:0010215)
0.1 1.0 GO:0016554 cytidine to uridine editing(GO:0016554)
0.1 1.0 GO:0006825 copper ion transport(GO:0006825)
0.1 0.4 GO:0080009 mRNA methylation(GO:0080009)
0.1 0.5 GO:0010387 COP9 signalosome assembly(GO:0010387)
0.1 0.8 GO:0045842 positive regulation of mitotic nuclear division(GO:0045840) positive regulation of mitotic metaphase/anaphase transition(GO:0045842) positive regulation of mitotic sister chromatid separation(GO:1901970) positive regulation of metaphase/anaphase transition of cell cycle(GO:1902101)
0.1 0.6 GO:1902299 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.1 2.9 GO:0030490 maturation of SSU-rRNA(GO:0030490)
0.0 1.1 GO:0051084 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 1.3 GO:0006783 heme biosynthetic process(GO:0006783)
0.0 1.5 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.3 GO:0071731 response to nitric oxide(GO:0071731)
0.0 0.5 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.7 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 1.3 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.1 GO:0009304 tRNA transcription(GO:0009304)
0.0 0.2 GO:0008535 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.0 0.1 GO:0098849 phytochelatin metabolic process(GO:0046937) phytochelatin biosynthetic process(GO:0046938) cellular response to cadmium ion(GO:0071276) cellular detoxification of cadmium ion(GO:0098849)
0.0 0.3 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.0 3.5 GO:0006364 rRNA processing(GO:0006364)
0.0 0.3 GO:0042793 transcription from plastid promoter(GO:0042793)
0.0 0.2 GO:0032950 regulation of beta-glucan metabolic process(GO:0032950) regulation of beta-glucan biosynthetic process(GO:0032951) CTP salvage(GO:0044211) regulation of cellulose biosynthetic process(GO:2001006)
0.0 0.5 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 0.4 GO:0030968 endoplasmic reticulum unfolded protein response(GO:0030968)
0.0 0.3 GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway(GO:0032511)
0.0 1.0 GO:0055046 microgametogenesis(GO:0055046)
0.0 0.4 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 0.8 GO:0042176 regulation of protein catabolic process(GO:0042176)
0.0 0.5 GO:0052542 defense response by callose deposition(GO:0052542)
0.0 0.2 GO:0006353 DNA-templated transcription, termination(GO:0006353)
0.0 0.0 GO:0010324 membrane invagination(GO:0010324)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 3.3 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.5 3.2 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.4 1.3 GO:0030689 Noc complex(GO:0030689)
0.2 0.9 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.1 0.6 GO:0000812 Swr1 complex(GO:0000812)
0.1 0.8 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.1 0.6 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.1 1.8 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.1 1.1 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.1 0.9 GO:0010369 chromocenter(GO:0010369)
0.1 1.4 GO:0005732 small nucleolar ribonucleoprotein complex(GO:0005732)
0.1 2.2 GO:0032040 small-subunit processome(GO:0032040)
0.1 6.2 GO:0005759 mitochondrial matrix(GO:0005759)
0.1 0.6 GO:0042555 MCM complex(GO:0042555)
0.1 0.8 GO:0008541 proteasome regulatory particle, lid subcomplex(GO:0008541)
0.1 0.6 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.1 1.2 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.1 0.4 GO:0030686 90S preribosome(GO:0030686)
0.0 0.5 GO:0008180 COP9 signalosome(GO:0008180)
0.0 2.2 GO:0005747 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 0.4 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.0 0.8 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 0.3 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.1 GO:0030915 Smc5-Smc6 complex(GO:0030915)
0.0 0.5 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 6.7 GO:0005730 nucleolus(GO:0005730)
0.0 0.1 GO:0030139 endocytic vesicle(GO:0030139)
0.0 0.5 GO:0000145 exocyst(GO:0000145)
0.0 1.5 GO:0018995 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 1.4 GO:0005743 mitochondrial inner membrane(GO:0005743)
0.0 0.4 GO:0034708 methyltransferase complex(GO:0034708)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 3.3 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.4 2.3 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.3 1.0 GO:0001054 RNA polymerase I activity(GO:0001054) RNA polymerase III activity(GO:0001056)
0.3 3.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.3 1.3 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.3 1.3 GO:0034511 U3 snoRNA binding(GO:0034511)
0.2 1.7 GO:0097177 translation activator activity(GO:0008494) mitochondrial ribosome binding(GO:0097177)
0.2 1.0 GO:0016531 copper chaperone activity(GO:0016531)
0.1 0.4 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.1 1.5 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.1 3.6 GO:0004407 histone deacetylase activity(GO:0004407) protein deacetylase activity(GO:0033558)
0.1 0.9 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.1 0.5 GO:0003680 AT DNA binding(GO:0003680)
0.1 0.5 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.1 0.6 GO:0004003 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.1 1.0 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.1 5.0 GO:0003724 RNA helicase activity(GO:0003724)
0.1 1.0 GO:0003746 translation elongation factor activity(GO:0003746)
0.1 1.1 GO:0051787 misfolded protein binding(GO:0051787)
0.0 1.0 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 1.5 GO:0031593 polyubiquitin binding(GO:0031593)
0.0 1.1 GO:0051087 chaperone binding(GO:0051087)
0.0 0.7 GO:0031072 heat shock protein binding(GO:0031072)
0.0 0.2 GO:0004849 uridine kinase activity(GO:0004849)
0.0 0.5 GO:0070122 isopeptidase activity(GO:0070122)
0.0 0.8 GO:0000049 tRNA binding(GO:0000049)
0.0 1.7 GO:0042393 histone binding(GO:0042393)
0.0 0.4 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.1 GO:0016742 hydroxymethyl-, formyl- and related transferase activity(GO:0016742)
0.0 1.0 GO:0050897 cobalt ion binding(GO:0050897)
0.0 0.4 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.1 GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity(GO:0016756)
0.0 2.6 GO:0005507 copper ion binding(GO:0005507)
0.0 0.5 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.5 GO:0003678 DNA helicase activity(GO:0003678)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.7 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network
0.2 0.6 PID RAS PATHWAY Regulation of Ras family activation
0.2 1.5 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.7 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.3 3.3 REACTOME PPARA ACTIVATES GENE EXPRESSION Genes involved in PPARA Activates Gene Expression
0.2 1.0 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.1 0.6 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA