Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT3G47640

Z-value: 0.23

Transcription factors associated with AT3G47640

Gene Symbol Gene ID Gene Info
AT3G47640
AT3G47640 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PYEarTal_v1_Chr3_+_17567126_175671260.525.6e-02Click!

Activity profile of AT3G47640 motif

Sorted Z-values of AT3G47640 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr3_-_17475274_17475274 0.53 AT3G47420.3
AT3G47420.1
AT3G47420.2
G3Pp1
putative glycerol-3-phosphate transporter 1
arTal_v1_Chr5_-_8358546_8358546 0.39 AT5G24470.1
PRR5
two-component response regulator-like protein
arTal_v1_Chr1_-_28094915_28094956 0.25 AT1G74770.2
AT1G74770.1
AT1G74770
zinc ion binding protein
arTal_v1_Chr3_+_17569424_17569424 0.19 AT3G47650.1
AT3G47650
DnaJ/Hsp40 cysteine-rich domain superfamily protein
arTal_v1_Chr1_+_21136835_21136835 0.18 AT1G56430.1
NAS4
nicotianamine synthase 4
arTal_v1_Chr1_+_21043348_21043348 0.18 AT1G56220.2
AT1G56220.1
AT1G56220
Dormancy/auxin associated family protein
arTal_v1_Chr1_+_21042951_21042977 0.17 AT1G56220.4
AT1G56220.5
AT1G56220.3
AT1G56220
Dormancy/auxin associated family protein
arTal_v1_Chr2_+_12847518_12847518 0.14 AT2G30100.1
AT2G30100
pentatricopeptide (PPR) repeat-containing protein
arTal_v1_Chr2_-_19281772_19281811 0.14 AT2G46920.4
AT2G46920.3
AT2G46920.2
AT2G46920.1
POL
Protein phosphatase 2C family protein
arTal_v1_Chr3_+_21123859_21123859 0.13 AT3G57070.1
AT3G57070
Glutaredoxin family protein
arTal_v1_Chr5_+_18407388_18407388 0.13 AT5G45430.1
AT5G45430
Protein kinase superfamily protein
arTal_v1_Chr5_-_4842067_4842067 0.12 AT5G14950.1
GMII
golgi alpha-mannosidase II
arTal_v1_Chr5_+_18407150_18407150 0.12 AT5G45430.2
AT5G45430
Protein kinase superfamily protein
arTal_v1_Chr5_-_4430901_4430901 0.11 AT5G13730.1
SIG4
sigma factor 4
arTal_v1_Chr3_+_21125725_21125725 0.10 AT3G57080.1
NRPE5
Eukaryotic rpb5 RNA polymerase subunit family protein
arTal_v1_Chr3_+_17480521_17480521 0.10 AT3G47430.1
PEX11B
peroxin 11B
arTal_v1_Chr3_-_5119060_5119060 0.09 AT3G15200.1
AT3G15200
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr3_-_7621477_7621477 0.09 AT3G21640.1
TWD1
FKBP-type peptidyl-prolyl cis-trans isomerase family protein
arTal_v1_Chr3_-_7624114_7624133 0.09 AT3G21650.2
AT3G21650.1
AT3G21650
Protein phosphatase 2A regulatory B subunit family protein
arTal_v1_Chr2_-_14260739_14260739 0.09 AT2G33710.2
AT2G33710
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_-_740319_740319 0.09 AT5G03140.1
AT5G03140
Concanavalin A-like lectin protein kinase family protein
arTal_v1_Chr1_-_738234_738306 0.08 AT1G03080.2
AT1G03080.1
NET1D
kinase interacting (KIP1-like) family protein
arTal_v1_Chr3_-_21121051_21121160 0.08 AT3G57060.1
AT3G57060.2
AT3G57060.3
AT3G57060
binding protein
arTal_v1_Chr2_-_14260904_14260904 0.08 AT2G33710.1
AT2G33710
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_+_28095729_28095729 0.08 AT1G74780.1
AT1G74780
Nodulin-like / Major Facilitator Superfamily protein
arTal_v1_Chr5_+_4432297_4432306 0.07 AT5G13740.2
AT5G13740.1
ZIF1
zinc induced facilitator 1
arTal_v1_Chr3_-_4493737_4493831 0.07 AT3G13700.2
AT3G13700.1
AT3G13710.1
AT3G13700
PRA1.F4
RNA-binding (RRM/RBD/RNP motifs) family protein
prenylated RAB acceptor 1.F4
arTal_v1_Chr1_-_27273935_27273935 0.07 AT1G72440.1
EDA25
CCAAT-binding factor
arTal_v1_Chr2_+_10431260_10431260 0.06 AT2G24560.1
AT2G24560
GDSL-like Lipase/Acylhydrolase family protein
arTal_v1_Chr1_+_3995393_3995418 0.05 AT1G11840.6
AT1G11840.3
AT1G11840.4
GLX1
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
arTal_v1_Chr1_+_3995158_3995169 0.05 AT1G11840.2
AT1G11840.1
AT1G11840.5
GLX1
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
arTal_v1_Chr3_+_20553403_20553403 0.05 AT3G55440.1
TPI
triosephosphate isomerase
arTal_v1_Chr4_+_17400610_17400724 0.05 AT4G36920.2
AT4G36920.1
AP2
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_-_738056_738056 0.05 AT1G03080.3
NET1D
kinase interacting (KIP1-like) family protein
arTal_v1_Chr2_+_10431412_10431412 0.05 AT2G24560.2
AT2G24560
GDSL-like Lipase/Acylhydrolase family protein
arTal_v1_Chr1_+_28098464_28098464 0.04 AT1G74790.1
AT1G74790
catalytics
arTal_v1_Chr4_+_749307_749307 0.04 AT4G01730.1
AT4G01730
DHHC-type zinc finger family protein
arTal_v1_Chr3_-_17565496_17565685 0.02 AT3G47630.1
AT3G47630.4
AT3G47630.5
AT3G47630.3
AT3G47630.2
AT3G47630.6
AT3G47630
translocator assembly/maintenance protein
arTal_v1_Chr5_-_763480_763480 0.02 AT5G03210.2
DIP2
E3 ubiquitin-protein ligase
arTal_v1_Chr5_-_763322_763322 0.02 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G47640

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0030418 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.0 0.5 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.0 0.1 GO:0006517 protein deglycosylation(GO:0006517)
0.0 0.1 GO:0046166 glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
0.0 0.1 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.0 0.1 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458)
0.0 0.1 GO:0019243 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.0 0.1 GO:0044375 regulation of peroxisome size(GO:0044375)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0000796 condensin complex(GO:0000796)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.0 0.1 GO:0004462 lactoylglutathione lyase activity(GO:0004462)
0.0 0.1 GO:0015924 mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.0 0.1 GO:0004807 triose-phosphate isomerase activity(GO:0004807)
0.0 0.1 GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 PID MTOR 4PATHWAY mTOR signaling pathway