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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G18450

Z-value: 0.62

Transcription factors associated with AT4G18450

Gene Symbol Gene ID Gene Info
AT4G18450
AT4G18450 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT4G18450arTal_v1_Chr4_-_10191252_101912520.303.0e-01Click!

Activity profile of AT4G18450 motif

Sorted Z-values of AT4G18450 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr5_+_15742543_15742543 0.79 AT5G39320.1
UDG4
UDP-glucose 6-dehydrogenase family protein
arTal_v1_Chr1_+_18035967_18035967 0.70 AT1G48750.1
AT1G48750
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr5_+_4576123_4576202 0.61 AT5G14200.1
AT5G14200.3
AT5G14200.2
IMD1
isopropylmalate dehydrogenase 1
arTal_v1_Chr2_+_9592956_9592956 0.59 AT2G22590.1
AT2G22590
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr5_+_25756272_25756272 0.58 AT5G64420.1
AT5G64420
DNA polymerase V family
arTal_v1_Chr1_+_618061_618061 0.54 AT1G02810.1
AT1G02810
Plant invertase/pectin methylesterase inhibitor superfamily
arTal_v1_Chr1_+_25018077_25018173 0.51 AT1G67035.2
AT1G67035.1
AT1G67035
homeobox Hox-B3-like protein
arTal_v1_Chr1_+_7404328_7404328 0.51 AT1G21140.1
AT1G21140
Vacuolar iron transporter (VIT) family protein
arTal_v1_Chr5_-_3728726_3728726 0.49 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_+_26555705_26555705 0.49 AT1G70460.1
PERK13
root hair specific 10
arTal_v1_Chr3_-_17008528_17008528 0.48 AT3G46280.1
AT3G46280
kinase-like protein
arTal_v1_Chr2_+_14003128_14003128 0.47 AT2G32990.1
GH9B8
glycosyl hydrolase 9B8
arTal_v1_Chr3_-_4775258_4775258 0.47 AT3G14310.1
PME3
pectin methylesterase 3
arTal_v1_Chr5_+_22261134_22261134 0.44 AT5G54800.1
GPT1
glucose 6-phosphate/phosphate translocator 1
arTal_v1_Chr4_-_13194124_13194124 0.42 AT4G25990.1
AT4G25990.3
CIL
CCT motif family protein
arTal_v1_Chr2_+_14746236_14746236 0.42 AT2G34970.1
AT2G34970
Trimeric LpxA-like enzyme
arTal_v1_Chr3_-_42159_42159 0.41 AT3G01120.1
MTO1
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
arTal_v1_Chr2_-_7130729_7130729 0.41 AT2G16440.1
MCM4
Minichromosome maintenance (MCM2/3/5) family protein
arTal_v1_Chr3_-_5892216_5892332 0.40 AT3G17240.2
AT3G17240.3
AT3G17240.1
mtLPD2
lipoamide dehydrogenase 2
arTal_v1_Chr1_+_474373_474373 0.40 AT1G02370.1
AT1G02370
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr1_+_8549191_8549251 0.40 AT1G24150.2
AT1G24150.1
FH4
formin homologue 4
arTal_v1_Chr4_-_16376666_16376666 0.39 AT4G34200.1
EDA9
D-3-phosphoglycerate dehydrogenase
arTal_v1_Chr3_+_8648669_8648674 0.39 AT3G23940.1
AT3G23940.2
AT3G23940
dehydratase family
arTal_v1_Chr2_-_16115204_16115204 0.39 AT2G38490.1
CIPK22
CBL-interacting Serine/Threonine-kinase
arTal_v1_Chr1_+_4105223_4105223 0.38 AT1G12110.1
NRT1.1
nitrate transporter 1.1
arTal_v1_Chr5_+_22525771_22525807 0.38 AT5G55610.1
AT5G55610.2
AT5G55610
isopentenyl-diphosphate delta-isomerase
arTal_v1_Chr3_+_6273966_6273966 0.38 AT3G18290.1
BTS
zinc finger protein-like protein
arTal_v1_Chr4_-_13016235_13016235 0.38 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
arTal_v1_Chr3_-_4235814_4235814 0.37 AT3G13175.1
AT3G13175
transmembrane protein
arTal_v1_Chr3_-_654480_654487 0.37 AT3G02920.3
AT3G02920.1
AT3G02920.2
RPA32B
Replication protein A, subunit RPA32
arTal_v1_Chr1_-_23892193_23892193 0.37 AT1G64380.1
AT1G64380
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_-_23725585_23725585 0.37 AT5G58730.1
Mik
pfkB-like carbohydrate kinase family protein
arTal_v1_Chr1_-_1375742_1375821 0.37 AT1G04870.1
AT1G04870.2
PRMT10
protein arginine methyltransferase 10
arTal_v1_Chr3_+_2622849_2622849 0.36 AT3G08640.1
AT3G08640
alphavirus core family protein (DUF3411)
arTal_v1_Chr1_-_13279682_13279682 0.35 AT1G35780.4
AT1G35780
N-lysine methyltransferase
arTal_v1_Chr1_-_29965758_29965795 0.35 AT1G79630.2
AT1G79630.1
AT1G79630.7
AT1G79630.5
AT1G79630.4
AT1G79630.8
AT1G79630.3
AT1G79630.6
AT1G79630
Protein phosphatase 2C family protein
arTal_v1_Chr1_-_13280380_13280387 0.34 AT1G35780.2
AT1G35780.1
AT1G35780
N-lysine methyltransferase
arTal_v1_Chr5_-_4986377_4986377 0.34 AT5G15350.1
ENODL17
early nodulin-like protein 17
arTal_v1_Chr3_+_14751280_14751280 0.34 AT3G42660.1
AT3G42660
transducin family protein / WD-40 repeat family protein
arTal_v1_Chr1_+_18416474_18416475 0.34 AT1G49760.2
AT1G49760.1
PAB8
poly(A) binding protein 8
arTal_v1_Chr3_-_10132759_10132882 0.33 AT3G27380.2
AT3G27380.1
SDH2-1
succinate dehydrogenase 2-1
arTal_v1_Chr3_+_270221_270229 0.33 AT3G01750.1
AT3G01750.2
AT3G01750
Ankyrin repeat family protein
arTal_v1_Chr4_-_13193620_13193620 0.33 AT4G25990.2
CIL
CCT motif family protein
arTal_v1_Chr1_+_5090809_5090809 0.33 AT1G14780.1
AT1G14780
MAC/Perforin domain-containing protein
arTal_v1_Chr1_-_13279879_13279879 0.33 AT1G35780.3
AT1G35780
N-lysine methyltransferase
arTal_v1_Chr1_-_1437763_1437763 0.32 AT1G05020.1
AT1G05020
ENTH/ANTH/VHS superfamily protein
arTal_v1_Chr1_+_26814260_26814260 0.32 AT1G71100.1
RSW10
Ribose 5-phosphate isomerase, type A protein
arTal_v1_Chr3_+_7275645_7275706 0.32 AT3G20810.1
AT3G20810.4
AT3G20810.2
AT3G20810.5
AT3G20810.3
JMJD5
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
arTal_v1_Chr2_-_16038972_16038972 0.32 AT2G38280.2
AT2G38280.1
FAC1
AMP deaminase, putative / myoadenylate deaminase
arTal_v1_Chr4_+_929869_929869 0.32 AT4G02100.1
AT4G02100
Heat shock protein DnaJ with tetratricopeptide repeat-containing protein
arTal_v1_Chr4_-_13692832_13692832 0.32 AT4G27350.1
AT4G27350
membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
arTal_v1_Chr2_+_8026957_8026957 0.32 AT2G18500.1
OFP7
ovate family protein 7
arTal_v1_Chr2_-_12173951_12173991 0.31 AT2G28470.2
AT2G28470.4
AT2G28470.1
AT2G28470.3
BGAL8
beta-galactosidase 8
arTal_v1_Chr5_+_21700187_21700202 0.31 AT5G53460.1
AT5G53460.3
AT5G53460.2
GLT1
NADH-dependent glutamate synthase 1
arTal_v1_Chr1_+_23727794_23727794 0.31 AT1G63930.1
ROH1
from the Czech 'roh' meaning 'corner'
arTal_v1_Chr3_-_11013451_11013451 0.30 AT3G29030.1
EXPA5
expansin A5
arTal_v1_Chr3_-_8902835_8902835 0.30 AT3G24480.1
AT3G24480
Leucine-rich repeat (LRR) family protein
arTal_v1_Chr4_-_7545512_7545512 0.30 AT4G12880.1
ENODL19
early nodulin-like protein 19
arTal_v1_Chr2_-_10228698_10228698 0.30 AT2G24050.1
eIFiso4G2
MIF4G domain-containing protein / MA3 domain-containing protein
arTal_v1_Chr3_-_20361560_20361560 0.30 AT3G54950.1
pPLAIIIbeta
patatin-like protein 6
arTal_v1_Chr5_-_20345302_20345302 0.29 AT5G50000.2
AT5G50000.1
AT5G50000
Protein kinase superfamily protein
arTal_v1_Chr3_+_2620713_2620713 0.29 AT3G08630.1
AT3G08630
alphavirus core family protein (DUF3411)
arTal_v1_Chr1_-_22400312_22400413 0.29 AT1G60850.3
AT1G60850.2
AT1G60850.4
AT1G60850.1
ATRPAC42
DNA-directed RNA polymerase family protein
arTal_v1_Chr3_+_19421397_19421397 0.28 AT3G52380.1
CP33
chloroplast RNA-binding protein 33
arTal_v1_Chr4_+_9028262_9028262 0.27 AT4G15910.1
DI21
drought-induced 21
arTal_v1_Chr4_+_18315545_18315605 0.27 AT4G39390.2
AT4G39390.1
AT4G39390.3
NST-K1
nucleotide sugar transporter-KT 1
arTal_v1_Chr2_+_16869189_16869334 0.27 AT2G40400.1
AT2G40400.2
AT2G40400.3
AT2G40400
DUF399 family protein, putative (DUF399 and DUF3411)
arTal_v1_Chr5_+_7524086_7524086 0.27 AT5G22630.1
ADT5
arogenate dehydratase 5
arTal_v1_Chr2_-_13319560_13319560 0.26 AT2G31240.1
AT2G31240
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr5_+_3931349_3931484 0.26 AT5G12170.2
AT5G12170.3
CLT3
CRT (chloroquine-resistance transporter)-like transporter 3
arTal_v1_Chr2_+_17012176_17012176 0.25 AT2G40765.1
AT2G40765
transmembrane protein
arTal_v1_Chr4_-_8369312_8369312 0.25 AT4G14580.1
CIPK4
CBL-interacting protein kinase 4
arTal_v1_Chr5_-_4736645_4736645 0.25 AT5G14690.1
AT5G14690
transmembrane protein
arTal_v1_Chr1_-_5773322_5773322 0.25 AT1G16870.1
AT1G16870
mitochondrial 28S ribosomal protein S29-like protein
arTal_v1_Chr3_+_9809582_9809658 0.24 AT3G26700.1
AT3G26700.2
AT3G26700.3
AT3G26700.4
AT3G26700.5
AT3G26700
Protein kinase superfamily protein
arTal_v1_Chr5_+_5078200_5078293 0.24 AT5G15600.1
AT5G15600.2
SP1L4
SPIRAL1-like4
arTal_v1_Chr4_-_1005253_1005305 0.24 AT4G02290.2
AT4G02290.1
GH9B13
glycosyl hydrolase 9B13
arTal_v1_Chr4_-_7545326_7545326 0.24 AT4G12880.2
ENODL19
early nodulin-like protein 19
arTal_v1_Chr2_+_12363426_12363456 0.23 AT2G28810.2
AT2G28810.1
AT2G28810
Dof-type zinc finger DNA-binding family protein
arTal_v1_Chr2_-_16042383_16042521 0.23 AT2G38290.2
AT2G38290.1
AMT2
ammonium transporter 2
arTal_v1_Chr2_-_18706266_18706401 0.23 AT2G45400.4
AT2G45400.2
AT2G45400.1
BEN1
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr2_-_16740486_16740486 0.23 AT2G40090.1
ATH9
ABC2 homolog 9
arTal_v1_Chr1_-_18413016_18413016 0.23 AT1G49750.1
AT1G49750
Leucine-rich repeat (LRR) family protein
arTal_v1_Chr2_+_19486842_19486842 0.23 AT2G47490.1
NDT1
NAD+ transporter 1
arTal_v1_Chr4_+_1258532_1258532 0.22 AT4G02820.1
AT4G02820
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr1_+_23527570_23527570 0.22 AT1G63440.1
HMA5
heavy metal atpase 5
arTal_v1_Chr5_-_24728244_24728244 0.22 AT5G61480.1
PXY
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr5_+_15305847_15305847 0.22 AT5G38300.1
AT5G38300
homeobox Hox-B3-like protein
arTal_v1_Chr4_-_9453300_9453300 0.22 AT4G16790.1
AT4G16790
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr5_+_3679748_3679809 0.22 AT5G11510.3
AT5G11510.1
AT5G11510.2
MYB3R-4
myb domain protein 3r-4
arTal_v1_Chr2_+_12251784_12251784 0.22 AT2G28600.1
AT2G28600
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr2_-_16700309_16700309 0.21 AT2G39990.1
EIF2
eukaryotic translation initiation factor 2
arTal_v1_Chr3_+_19431095_19431095 0.21 AT3G52430.1
PAD4
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr5_-_19287179_19287179 0.21 AT5G47550.1
AT5G47550
Cystatin/monellin superfamily protein
arTal_v1_Chr4_+_16997091_16997091 0.20 AT4G35890.2
AT4G35890.1
LARP1c
winged-helix DNA-binding transcription factor family protein
arTal_v1_Chr5_+_2455593_2455593 0.20 AT5G07720.1
XXT3
Galactosyl transferase GMA12/MNN10 family protein
arTal_v1_Chr4_+_2536925_2536925 0.20 AT4G04970.1
GSL1
glucan synthase-like 1
arTal_v1_Chr3_+_5298991_5299110 0.20 AT3G15640.1
AT3G15640.2
AT3G15640
Rubredoxin-like superfamily protein
arTal_v1_Chr4_+_14566183_14566265 0.20 AT4G29740.3
AT4G29740.2
AT4G29740.1
CKX4
cytokinin oxidase 4
arTal_v1_Chr4_-_12890261_12890262 0.19 AT4G25110.2
AT4G25110.1
MC2
metacaspase 2
arTal_v1_Chr1_+_28133933_28133933 0.19 AT1G74900.1
OTP43
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr4_+_7239200_7239200 0.19 AT4G12080.1
AHL1
AT-hook motif nuclear-localized protein 1
arTal_v1_Chr5_-_21154395_21154395 0.19 AT5G52060.1
BAG1
BCL-2-associated athanogene 1
arTal_v1_Chr3_-_2524168_2524168 0.19 AT3G07910.1
AT3G07910
reactive oxygen species modulator-like protein
arTal_v1_Chr2_+_7564240_7564276 0.18 AT2G17420.1
AT2G17420.2
NTRA
NADPH-dependent thioredoxin reductase A
arTal_v1_Chr2_-_13864596_13864710 0.18 AT2G32690.2
AT2G32690.3
AT2G32690.5
AT2G32690.4
AT2G32690.1
GRP23
glycine-rich protein 23
arTal_v1_Chr4_+_16842174_16842174 0.18 AT4G35460.1
NTRB
NADPH-dependent thioredoxin reductase B
arTal_v1_Chr2_-_12173679_12173679 0.18 AT2G28470.5
BGAL8
beta-galactosidase 8
arTal_v1_Chr4_+_1042235_1042235 0.18 AT4G02370.1
AT4G02370
pectinesterase (Protein of unknown function, DUF538)
arTal_v1_Chr2_+_14856664_14856664 0.18 AT2G35270.1
GIK
Putative AT-hook DNA-binding family protein
arTal_v1_Chr1_-_24438623_24438623 0.18 AT1G65710.1
AT1G65710
serine/arginine repetitive matrix-like protein
arTal_v1_Chr5_-_23785512_23785512 0.18 AT5G58900.1
AT5G58900
Homeodomain-like transcriptional regulator
arTal_v1_Chr5_-_13826368_13826444 0.18 AT5G35620.2
AT5G35620.3
AT5G35620.1
LSP1
Eukaryotic initiation factor 4E protein
arTal_v1_Chr4_-_7222166_7222166 0.17 AT4G12050.1
AT4G12050
Putative AT-hook DNA-binding family protein
arTal_v1_Chr4_-_18073182_18073182 0.17 AT4G38680.1
GRP2
glycine rich protein 2
arTal_v1_Chr1_-_1534767_1534767 0.17 AT1G05270.1
AT1G05270
TraB family protein
arTal_v1_Chr5_-_1057172_1057172 0.17 AT5G03910.1
ABCB29
ABC2 homolog 12
arTal_v1_Chr5_+_5543834_5543834 0.17 AT5G16860.1
AT5G16860
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr5_+_17692786_17692786 0.17 AT5G43970.1
TOM22-V
translocase of outer membrane 22-V
arTal_v1_Chr3_+_2940305_2940305 0.17 AT3G09570.1
AT3G09570
Lung seven transmembrane receptor family protein
arTal_v1_Chr1_+_27026677_27026729 0.17 AT1G71860.1
AT1G71860.3
AT1G71860.2
PTP1
protein tyrosine phosphatase 1
arTal_v1_Chr1_-_28616785_28616785 0.16 AT1G76270.1
AT1G76270
O-fucosyltransferase family protein
arTal_v1_Chr2_-_18705625_18705625 0.16 AT2G45400.3
BEN1
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr5_-_5808619_5808619 0.16 AT5G17620.1
AUG7
nuclear matrix protein
arTal_v1_Chr1_+_12455653_12455653 0.16 AT1G34200.1
AT1G34200
Glyceraldehyde-3-phosphate dehydrogenase-like family protein
arTal_v1_Chr1_-_17973303_17973402 0.16 AT1G48610.2
AT1G48610.1
AT1G48610
AT hook motif-containing protein
arTal_v1_Chr1_-_29575794_29575801 0.15 AT1G78620.2
AT1G78620.1
AT1G78620
integral membrane protein (Protein of unknown function DUF92, transmembrane)
arTal_v1_Chr3_-_18308091_18308091 0.15 AT3G49370.1
AT3G49370
Calcium-dependent protein kinase (CDPK) family protein
arTal_v1_Chr5_+_16281394_16281404 0.15 AT5G40650.1
AT5G40650.2
SDH2-2
succinate dehydrogenase 2-2
arTal_v1_Chr5_+_22515391_22515440 0.15 AT5G55580.1
AT5G55580.3
AT5G55580.2
AT5G55580
Mitochondrial transcription termination factor family protein
arTal_v1_Chr1_-_9024081_9024081 0.15 AT1G26100.1
AT1G26100
Cytochrome b561/ferric reductase transmembrane protein family
arTal_v1_Chr1_-_5645443_5645443 0.14 AT1G16510.1
AT1G16510
SAUR-like auxin-responsive protein family
arTal_v1_Chr5_+_8447954_8447954 0.14 AT5G24670.5
AT5G24670.4
AT5G24670.2
EMB2820
Cytidine/deoxycytidylate deaminase family protein
arTal_v1_Chr3_+_8970632_8970664 0.14 AT3G24590.2
AT3G24590.1
PLSP1
plastidic type i signal peptidase 1
arTal_v1_Chr1_+_25325138_25325140 0.14 AT1G67570.1
AT1G67570.2
AT1G67570
zinc finger CONSTANS-like protein (DUF3537)
arTal_v1_Chr1_+_17432433_17432500 0.14 AT1G47500.1
AT1G47500.2
RBP47C'
RNA-binding protein 47C'
arTal_v1_Chr3_-_23186720_23186720 0.14 AT3G62690.1
ATL5
AtL5
arTal_v1_Chr3_-_3331282_3331282 0.14 AT3G10650.2
NUP1
nuclear pore complex protein
arTal_v1_Chr1_+_21028137_21028179 0.14 AT1G56190.1
AT1G56190.2
AT1G56190
Phosphoglycerate kinase family protein
arTal_v1_Chr3_+_5061681_5061681 0.14 AT3G15030.2
AT3G15030.3
AT3G15030.4
AT3G15030.1
TCP4
TCP family transcription factor 4
arTal_v1_Chr2_-_11009861_11009861 0.14 AT2G25800.1
AT2G25800
elongation factor Ts (DUF810)
arTal_v1_Chr2_+_9541401_9541401 0.14 AT2G22475.2
GEM
GRAM domain family protein
arTal_v1_Chr3_-_3331007_3331007 0.14 AT3G10650.1
NUP1
nuclear pore complex protein
arTal_v1_Chr2_+_9541128_9541128 0.13 AT2G22475.1
GEM
GRAM domain family protein
arTal_v1_Chr4_-_7968925_7968965 0.13 AT4G13720.1
AT4G13720.2
AT4G13720
Inosine triphosphate pyrophosphatase family protein
arTal_v1_Chr3_+_19039512_19039512 0.13 AT3G51290.3
AT3G51290.2
AT3G51290
pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632)
arTal_v1_Chr3_+_4049309_4049309 0.13 AT3G12740.1
ALIS1
ALA-interacting subunit 1
arTal_v1_Chr4_+_17679168_17679168 0.13 AT4G37630.1
AT4G37630.3
CYCD5%3B1
cyclin d5;1
arTal_v1_Chr2_+_9270784_9270844 0.13 AT2G21710.2
AT2G21710.1
AT2G21710.3
EMB2219
Mitochondrial transcription termination factor family protein
arTal_v1_Chr3_-_16002163_16002163 0.12 AT3G44326.1
AT3G44326
F-box family protein
arTal_v1_Chr4_-_4805337_4805337 0.12 AT4G07960.2
CSLC12
Cellulose-synthase-like C12
arTal_v1_Chr5_+_23655140_23655140 0.12 AT5G58520.1
AT5G58520
Protein kinase superfamily protein
arTal_v1_Chr3_-_623739_623739 0.12 AT3G02850.1
AT3G02850.2
SKOR
STELAR K+ outward rectifier
arTal_v1_Chr2_-_7925918_7925918 0.12 AT2G18210.1
AT2G18210
hypothetical protein
arTal_v1_Chr4_-_15429113_15429225 0.12 AT4G31890.2
AT4G31890.1
AT4G31890.3
AT4G31890
ARM repeat superfamily protein
arTal_v1_Chr5_+_3680325_3680452 0.12 AT5G11510.4
AT5G11510.5
MYB3R-4
myb domain protein 3r-4
arTal_v1_Chr5_+_26660311_26660311 0.12 AT5G66770.1
AT5G66770
GRAS family transcription factor
arTal_v1_Chr2_-_13835758_13835758 0.12 AT2G32600.1
AT2G32600
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_-_9460908_9460919 0.12 AT2G22250.1
AT2G22250.2
AT2G22250.3
AAT
aspartate aminotransferase
arTal_v1_Chr1_-_22067076_22067076 0.12 AT1G59940.1
ARR3
response regulator 3
arTal_v1_Chr5_-_8982873_8982891 0.12 AT5G25800.2
AT5G25800.1
AT5G25800
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
arTal_v1_Chr5_-_25725534_25725534 0.11 AT5G64320.1
AT5G64320
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr3_+_10782095_10782176 0.11 AT3G28720.2
AT3G28720.1
AT3G28720
transmembrane protein
arTal_v1_Chr4_-_4805647_4805647 0.11 AT4G07960.1
CSLC12
Cellulose-synthase-like C12
arTal_v1_Chr3_-_1791887_1791887 0.11 AT3G05970.1
LACS6
long-chain acyl-CoA synthetase 6
arTal_v1_Chr5_+_26564368_26564368 0.11 AT5G66560.2
AT5G66560
Phototropic-responsive NPH3 family protein
arTal_v1_Chr3_+_8163941_8163941 0.11 AT3G22990.1
LFR
ARM repeat superfamily protein
arTal_v1_Chr1_+_5578265_5578265 0.11 AT1G16310.1
AT1G16310
Cation efflux family protein
arTal_v1_Chr4_+_16413974_16413998 0.11 AT4G34310.3
AT4G34310.1
AT4G34310.2
AT4G34310.5
AT4G34310.9
AT4G34310.8
AT4G34310.4
AT4G34310.7
AT4G34310.6
AT4G34310.10
AT4G34310
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr5_-_37999_37999 0.11 AT5G01100.1
FRB1
O-fucosyltransferase family protein
arTal_v1_Chr3_-_18594715_18594715 0.11 AT3G50140.1
AT3G50140.2
AT3G50140
transmembrane protein, putative (DUF247)
arTal_v1_Chr5_+_8447378_8447497 0.11 AT5G24670.1
AT5G24670.3
EMB2820
Cytidine/deoxycytidylate deaminase family protein
arTal_v1_Chr3_+_16871578_16871578 0.10 AT3G45890.1
RUS1
root UVB sensitive-like protein (Protein of unknown function, DUF647)
arTal_v1_Chr1_-_5338326_5338326 0.10 AT1G15520.1
AT1G15520.2
ABCG40
pleiotropic drug resistance 12
arTal_v1_Chr2_-_9706217_9706217 0.10 AT2G22800.1
HAT9
Homeobox-leucine zipper protein family
arTal_v1_Chr1_-_2467058_2467165 0.10 AT1G07950.1
AT1G07950.2
MED22B
Surfeit locus protein 5 subunit 22 of Mediator complex
arTal_v1_Chr3_-_4671796_4671796 0.10 AT3G14090.1
EXO70D3
exocyst subunit exo70 family protein D3
arTal_v1_Chr1_-_23855658_23855658 0.10 AT1G64280.1
NPR1
regulatory protein (NPR1)
arTal_v1_Chr1_-_12059792_12059792 0.10 AT1G33250.1
AT1G33250
beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604)
arTal_v1_Chr1_-_22067233_22067233 0.10 AT1G59940.2
ARR3
response regulator 3
arTal_v1_Chr4_+_2471866_2471866 0.09 AT4G04885.1
PCFS4
PCF11P-similar protein 4
arTal_v1_Chr4_+_7731189_7731189 0.09 AT4G13270.1
AT4G13270
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
arTal_v1_Chr5_+_4249312_4249312 0.09 AT5G13280.1
AK-LYS1
aspartate kinase 1
arTal_v1_Chr1_+_10214681_10214681 0.09 AT1G29230.1
CIPK18
CBL-interacting protein kinase 18
arTal_v1_Chr3_+_6146015_6146058 0.09 AT3G17950.3
AT3G17950.1
AT3G17950.2
AT3G17950
transmembrane protein
arTal_v1_Chr4_-_9179833_9179833 0.09 AT4G16215.1
AT4G16215
hypothetical protein
arTal_v1_Chr1_+_3914774_3914774 0.09 AT1G11650.1
AT1G11650.2
RBP45B
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr1_+_9020380_9020380 0.09 AT1G26090.1
AT1G26090
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr1_-_9733000_9733000 0.09 AT1G27930.1
AT1G27930
glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
arTal_v1_Chr2_+_14550614_14550657 0.08 AT2G34540.2
AT2G34540.1
AT2G34540
hypothetical protein
arTal_v1_Chr1_-_20009320_20009320 0.08 AT1G53610.1
AT1G53610
transmembrane protein
arTal_v1_Chr3_+_18255961_18255961 0.08 AT3G49240.1
emb1796
Pentatricopeptide repeat (PPR) superfamily protein
arTal_v1_Chr5_+_6369004_6369004 0.08 AT5G19050.1
AT5G19050
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr1_-_1169034_1169034 0.08 AT1G04360.1
AT1G04360
RING/U-box superfamily protein
arTal_v1_Chr4_-_12708109_12708170 0.08 AT4G24610.2
AT4G24610.4
AT4G24610
pesticidal crystal cry8Ba protein
arTal_v1_Chr2_+_216605_216695 0.08 AT2G01480.1
AT2G01480.2
AT2G01480
O-fucosyltransferase family protein
arTal_v1_Chr1_+_17424473_17424473 0.08 AT1G47490.2
AT1G47490.1
RBP47C
RNA-binding protein 47C
arTal_v1_Chr5_-_6526735_6526735 0.08 AT5G19370.1
AT5G19370
rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein
arTal_v1_Chr3_+_23172754_23172754 0.08 AT3G62660.1
GATL7
galacturonosyltransferase-like 7
arTal_v1_Chr2_-_18556669_18556674 0.08 AT2G44980.2
AT2G44980.1
AT2G44980.3
ASG3
SNF2 domain-containing protein / helicase domain-containing protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G18450

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0006024 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.1 0.4 GO:0015717 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.1 0.4 GO:0035247 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247)
0.1 0.4 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 0.4 GO:1902292 cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
0.1 0.3 GO:0071763 nuclear membrane organization(GO:0071763)
0.1 0.3 GO:0071313 cellular response to alkaloid(GO:0071312) cellular response to caffeine(GO:0071313) cellular response to purine-containing compound(GO:0071415) negative regulation of cellular response to caffeine(GO:1901181)
0.1 0.4 GO:0090030 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.1 0.4 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.1 0.2 GO:0015696 ammonium transport(GO:0015696)
0.1 0.3 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.2 GO:0043132 NAD transport(GO:0043132)
0.1 0.3 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.1 0.3 GO:0042939 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.1 0.2 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 0.5 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.1 0.2 GO:0010618 response to trehalose(GO:0010353) aerenchyma formation(GO:0010618) positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.0 0.3 GO:0072334 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.0 0.4 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.0 0.3 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.0 0.2 GO:1990169 detoxification of copper ion(GO:0010273) stress response to copper ion(GO:1990169)
0.0 0.4 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.0 0.6 GO:0009098 leucine biosynthetic process(GO:0009098)
0.0 0.1 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.0 0.2 GO:0010067 procambium histogenesis(GO:0010067)
0.0 0.1 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.0 0.4 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.2 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.0 0.1 GO:0080168 lead ion transport(GO:0015692) abscisic acid transport(GO:0080168)
0.0 0.3 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.0 0.4 GO:0071450 removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451)
0.0 0.3 GO:0043101 purine nucleotide salvage(GO:0032261) purine-containing compound salvage(GO:0043101)
0.0 0.2 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.0 0.1 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.1 GO:0010288 response to lead ion(GO:0010288)
0.0 0.1 GO:0090069 regulation of ribosome biogenesis(GO:0090069)
0.0 0.2 GO:0006482 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.0 0.3 GO:0019374 galactolipid metabolic process(GO:0019374)
0.0 0.4 GO:0052482 defense response by cell wall thickening(GO:0052482)
0.0 0.1 GO:0006777 Mo-molybdopterin cofactor biosynthetic process(GO:0006777) molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) Mo-molybdopterin cofactor metabolic process(GO:0019720) molybdopterin cofactor biosynthetic process(GO:0032324) metal incorporation into metallo-molybdopterin complex(GO:0042040) molybdopterin cofactor metabolic process(GO:0043545) prosthetic group metabolic process(GO:0051189)
0.0 0.1 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.0 0.3 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.2 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.1 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.0 0.7 GO:0009631 cold acclimation(GO:0009631)
0.0 0.1 GO:0015914 phospholipid transport(GO:0015914)
0.0 0.2 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.0 0.1 GO:0080026 indolebutyric acid metabolic process(GO:0080024) response to indolebutyric acid(GO:0080026)
0.0 0.2 GO:0009969 xyloglucan biosynthetic process(GO:0009969)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.1 0.4 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0 0.4 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.0 0.2 GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541)
0.0 0.4 GO:0042555 MCM complex(GO:0042555)
0.0 0.5 GO:0045273 respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281)
0.0 0.2 GO:0070652 HAUS complex(GO:0070652)
0.0 0.4 GO:0072686 mitotic spindle(GO:0072686)
0.0 0.2 GO:0005763 mitochondrial small ribosomal subunit(GO:0005763)
0.0 0.1 GO:0009514 glyoxysome(GO:0009514)
0.0 0.2 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.0 0.2 GO:0005844 polysome(GO:0005844)
0.0 0.3 GO:0005750 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.0 0.2 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.3 GO:0034399 nuclear periphery(GO:0034399)
0.0 0.3 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.0 0.1 GO:0090544 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.2 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.2 GO:0005744 mitochondrial inner membrane presequence translocase complex(GO:0005744)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.2 0.6 GO:0003862 3-isopropylmalate dehydrogenase activity(GO:0003862)
0.1 0.4 GO:0015119 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.1 0.4 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.1 0.4 GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277)
0.1 0.4 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 0.3 GO:0001054 RNA polymerase I activity(GO:0001054) RNA polymerase III activity(GO:0001056)
0.1 0.4 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.1 0.3 GO:0004751 ribose-5-phosphate isomerase activity(GO:0004751)
0.1 0.2 GO:0008519 ammonium transmembrane transporter activity(GO:0008519)
0.1 0.3 GO:0015930 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.1 0.5 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.1 0.4 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.0 0.2 GO:0004000 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.0 0.3 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.0 0.1 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.0 0.3 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.0 0.3 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.2 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.0 0.2 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.0 0.2 GO:0015002 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.0 0.6 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 0.2 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.1 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.0 0.3 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.7 GO:0008810 cellulase activity(GO:0008810)
0.0 0.3 GO:0019239 deaminase activity(GO:0019239)
0.0 0.2 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.0 0.5 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.4 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 0.2 GO:0051011 microtubule minus-end binding(GO:0051011)
0.0 0.5 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.2 GO:0008131 primary amine oxidase activity(GO:0008131)
0.0 0.1 GO:0004072 aspartate kinase activity(GO:0004072)
0.0 0.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.1 GO:0032791 lead ion binding(GO:0032791)
0.0 0.3 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 1.0 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.1 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.0 0.1 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.1 GO:0015271 outward rectifier potassium channel activity(GO:0015271)
0.0 0.1 GO:0004165 dodecenoyl-CoA delta-isomerase activity(GO:0004165)
0.0 0.1 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.2 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 PID CMYB PATHWAY C-MYB transcription factor network
0.0 0.2 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.2 PID CXCR4 PATHWAY CXCR4-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.0 0.1 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing