Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT4G18890

Z-value: 0.92

Transcription factors associated with AT4G18890

Gene Symbol Gene ID Gene Info
AT4G18890
AT4G18890 BES1/BZR1 homolog 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
BEH3arTal_v1_Chr4_+_10352386_10352386-0.696.2e-03Click!

Activity profile of AT4G18890 motif

Sorted Z-values of AT4G18890 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr1_+_3288087_3288087 1.07 AT1G10070.3
AT1G10070.2
AT1G10070.1
BCAT-2
branched-chain amino acid transaminase 2
arTal_v1_Chr1_+_18542061_18542061 0.80 AT1G50040.1
AT1G50040
formin-like protein, putative (DUF1005)
arTal_v1_Chr1_+_5274271_5274271 0.73 AT1G15330.1
AT1G15330
Cystathionine beta-synthase (CBS) protein
arTal_v1_Chr5_+_22716917_22716917 0.71 AT5G56100.1
AT5G56100
glycine-rich protein / oleosin
arTal_v1_Chr5_+_26266180_26266266 0.66 AT5G65690.1
AT5G65690.2
AT5G65690.3
AT5G65690.4
PCK2
phosphoenolpyruvate carboxykinase 2
arTal_v1_Chr4_+_15230008_15230008 0.62 AT4G31380.1
FLP1
flowering-promoting factor-like protein
arTal_v1_Chr1_+_26400694_26400790 0.61 AT1G70090.1
AT1G70090.2
LGT8
glucosyl transferase family 8
arTal_v1_Chr1_-_1559917_1559917 0.59 AT1G05340.1
AT1G05340
cysteine-rich TM module stress tolerance protein
arTal_v1_Chr2_+_13658888_13659004 0.58 AT2G32150.1
AT2G32150.2
AT2G32150.3
AT2G32150
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
arTal_v1_Chr1_-_30202349_30202349 0.57 AT1G80340.1
GA3OX2
gibberellin 3-oxidase 2
arTal_v1_Chr5_+_23337832_23337832 0.56 AT5G57625.1
AT5G57625
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
arTal_v1_Chr4_+_8937358_8937358 0.55 AT4G15700.1
AT4G15700
Thioredoxin superfamily protein
arTal_v1_Chr3_+_5234457_5234457 0.54 AT3G15500.1
NAC3
NAC domain containing protein 3
arTal_v1_Chr1_-_2305031_2305031 0.52 AT1G07500.1
AT1G07500
hypothetical protein
arTal_v1_Chr5_+_1835047_1835047 0.51 AT5G06090.1
GPAT7
glycerol-3-phosphate acyltransferase 7
arTal_v1_Chr3_-_222827_222827 0.49 AT3G01570.1
AT3G01570
Oleosin family protein
arTal_v1_Chr1_-_11222789_11222827 0.49 AT1G31350.1
AT1G31350.2
KUF1
KAR-UP F-box 1
arTal_v1_Chr3_-_1939853_1939853 0.48 AT3G06390.1
AT3G06390
Uncharacterized protein family (UPF0497)
arTal_v1_Chr1_+_20458952_20459006 0.46 AT1G54870.2
AT1G54870.1
AT1G54870
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr3_+_6722825_6722825 0.46 AT3G19390.1
AT3G19390
Granulin repeat cysteine protease family protein
arTal_v1_Chr3_+_18029659_18029659 0.45 AT3G48660.1
AT3G48660
transmembrane protein, putative (DUF 3339)
arTal_v1_Chr1_-_29993724_29993766 0.44 AT1G79700.1
AT1G79700.3
AT1G79700.2
WRI4
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr3_+_5121303_5121303 0.44 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
arTal_v1_Chr4_-_13069762_13069762 0.44 AT4G25620.1
AT4G25620
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr3_-_15559710_15559710 0.44 AT3G43654.1
AT3G43654

arTal_v1_Chr5_-_17435405_17435405 0.44 AT5G43410.1
AT5G43410
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr4_+_13275200_13275200 0.44 AT4G26200.1
ACS7
1-amino-cyclopropane-1-carboxylate synthase 7
arTal_v1_Chr5_+_1608988_1608988 0.43 AT5G05440.1
PYL5
Polyketide cyclase/dehydrase and lipid transport superfamily protein
arTal_v1_Chr5_+_1378954_1378954 0.43 AT5G04770.3
CAT6
cationic amino acid transporter 6
arTal_v1_Chr1_+_900732_900732 0.42 AT1G03610.2
AT1G03610.1
AT1G03610
plant/protein (DUF789)
arTal_v1_Chr5_+_1378788_1378788 0.41 AT5G04770.2
CAT6
cationic amino acid transporter 6
arTal_v1_Chr3_-_21097481_21097481 0.41 AT3G57010.1
AT3G57010
Calcium-dependent phosphotriesterase superfamily protein
arTal_v1_Chr5_+_1378621_1378621 0.41 AT5G04770.1
CAT6
cationic amino acid transporter 6
arTal_v1_Chr5_-_9005941_9005941 0.41 AT5G25830.1
GATA12
GATA transcription factor 12
arTal_v1_Chr2_+_9488413_9488542 0.39 AT2G22330.2
AT2G22330.1
CYP79B3
cytochrome P450, family 79, subfamily B, polypeptide 3
arTal_v1_Chr2_-_19512728_19512728 0.39 AT2G47560.1
AT2G47560
RING/U-box superfamily protein
arTal_v1_Chr2_+_16221815_16221821 0.38 AT2G38820.2
AT2G38820.1
AT2G38820
DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506)
arTal_v1_Chr1_+_9951762_9951762 0.38 AT1G28360.1
ERF12
ERF domain protein 12
arTal_v1_Chr3_+_5006526_5006526 0.38 AT3G14880.1
AT3G14880.2
AT3G14880
transcription factor-like protein
arTal_v1_Chr4_+_9157471_9157527 0.38 AT4G16160.2
AT4G16160.1
ATOEP16-2
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
arTal_v1_Chr2_+_18641563_18641563 0.37 AT2G45210.1
SAUR36
SAUR-like auxin-responsive protein family
arTal_v1_Chr1_-_11108095_11108095 0.37 AT1G31120.1
KUP10
K+ uptake permease 10
arTal_v1_Chr5_+_5211719_5211719 0.36 AT5G15970.1
KIN2
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)
arTal_v1_Chr3_-_2225254_2225254 0.36 AT3G07030.1
AT3G07030.5
AT3G07030
Alba DNA/RNA-binding protein
arTal_v1_Chr1_-_4892332_4892332 0.35 AT1G14330.1
AT1G14330
Galactose oxidase/kelch repeat superfamily protein
arTal_v1_Chr2_+_19028359_19028359 0.35 AT2G46360.1
AT2G46360
hypothetical protein
arTal_v1_Chr4_+_2509053_2509053 0.35 AT4G04930.1
DES-1-LIKE
fatty acid desaturase family protein
arTal_v1_Chr3_-_2225465_2225522 0.35 AT3G07030.3
AT3G07030.2
AT3G07030.4
AT3G07030
Alba DNA/RNA-binding protein
arTal_v1_Chr5_-_5006882_5006882 0.35 AT5G15410.1
AT5G15410.2
DND1
Cyclic nucleotide-regulated ion channel family protein
arTal_v1_Chr1_+_9312936_9312936 0.34 AT1G26870.1
FEZ
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
arTal_v1_Chr1_-_958383_958383 0.34 AT1G03800.1
ERF10
ERF domain protein 10
arTal_v1_Chr5_+_22152724_22152724 0.34 AT5G54530.1
AT5G54530
serine protease, putative (Protein of unknown function, DUF538)
arTal_v1_Chr3_-_4614848_4614857 0.34 AT3G13970.3
AT3G13970.4
AT3G13970.2
AT3G13970.1
APG12B
Ubiquitin-like superfamily protein
arTal_v1_Chr3_+_22492811_22492811 0.34 AT3G60870.1
AHL18
AT-hook motif nuclear-localized protein 18
arTal_v1_Chr5_-_1558486_1558486 0.33 AT5G05250.1
AT5G05250
hypothetical protein
arTal_v1_Chr3_-_11384145_11384145 0.33 AT3G29575.1
AT3G29575.4
AT3G29575.3
AFP3
ABI five binding protein 3
arTal_v1_Chr4_+_9727687_9727740 0.33 AT4G17440.2
AT4G17440.3
AT4G17440.4
AT4G17440.1
AT4G17440
chromogranin (DUF1639)
arTal_v1_Chr4_+_10142255_10142255 0.32 AT4G18350.1
NCED2
nine-cis-epoxycarotenoid dioxygenase 2
arTal_v1_Chr2_+_18727504_18727504 0.32 AT2G45430.1
AHL22
AT-hook motif nuclear-localized protein 22
arTal_v1_Chr2_-_8045008_8045033 0.32 AT2G18540.1
AT2G18540.2
AT2G18540
RmlC-like cupins superfamily protein
arTal_v1_Chr2_-_11608416_11608416 0.32 AT2G27160.2
AT2G27160
hypothetical protein
arTal_v1_Chr2_-_11608166_11608166 0.32 AT2G27160.1
AT2G27160
hypothetical protein
arTal_v1_Chr5_+_2167120_2167120 0.31 AT5G06980.1
AT5G06980
hypothetical protein
arTal_v1_Chr1_+_29753648_29753648 0.31 AT1G79100.1
AT1G79100
arginine/serine-rich protein-like protein
arTal_v1_Chr5_-_3888894_3888894 0.31 AT5G12043.1
AT5G12043
hypothetical protein
arTal_v1_Chr1_-_17429813_17429813 0.31 AT1G47495.1
AT1G47495
hypothetical protein
arTal_v1_Chr5_+_24386010_24386010 0.31 AT5G60680.1
AT5G60680
transcription initiation factor TFIID subunit (Protein of unknown function, DUF584)
arTal_v1_Chr5_+_2167468_2167536 0.30 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
AT5G06980
hypothetical protein
arTal_v1_Chr4_-_17530589_17530589 0.30 AT4G37250.1
AT4G37250
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr5_+_2305551_2305551 0.30 AT5G07310.1
AT5G07310
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr2_-_16244531_16244531 0.30 AT2G38905.1
AT2G38905
Low temperature and salt responsive protein family
arTal_v1_Chr2_-_17438168_17438168 0.29 AT2G41800.1
AT2G41800
imidazolonepropionase (Protein of unknown function, DUF642)
arTal_v1_Chr4_-_14592610_14592610 0.29 AT4G29800.1
PLP8
PATATIN-like protein 8
arTal_v1_Chr4_+_11228187_11228187 0.29 AT4G21020.1
AT4G21020
Late embryogenesis abundant protein (LEA) family protein
arTal_v1_Chr3_+_5831136_5831136 0.29 AT3G17100.2
AT3G17100.1
AT3G17100
sequence-specific DNA binding transcription factor
arTal_v1_Chr3_+_21337533_21337533 0.29 AT3G57620.1
AT3G57620
glyoxal oxidase-related protein
arTal_v1_Chr2_+_17543005_17543005 0.29 AT2G42040.1
AT2G42040
WRC protein
arTal_v1_Chr3_+_23142485_23142485 0.29 AT3G62570.1
AT3G62570
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr1_-_9753952_9753952 0.28 AT1G27990.1
AT1G27990
transmembrane protein
arTal_v1_Chr5_+_4956314_4956431 0.28 AT5G15265.1
AT5G15265.2
AT5G15265
transmembrane protein
arTal_v1_Chr1_+_29220349_29220349 0.28 AT1G77740.1
PIP5K2
phosphatidylinositol-4-phosphate 5-kinase 2
arTal_v1_Chr3_+_6678630_6678630 0.27 AT3G19274.1
AT3G19274
hypothetical protein
arTal_v1_Chr2_+_13193954_13194025 0.27 AT2G31010.2
AT2G31010.1
AT2G31010
Protein kinase superfamily protein
arTal_v1_Chr2_+_1025_1025 0.27 AT2G01008.1
AT2G01008
maternal effect embryo arrest protein
arTal_v1_Chr5_-_1792634_1792634 0.27 AT5G05965.1
AT5G05965
cell wall RBR3-like protein
arTal_v1_Chr3_+_8287942_8287942 0.27 AT3G23220.1
ESE1
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr3_-_7286442_7286442 0.27 AT3G20830.1
UCNL
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
arTal_v1_Chr3_+_7973394_7973394 0.27 AT3G22510.1
AT3G22510
Pre-rRNA-processing protein TSR2, conserved region
arTal_v1_Chr1_-_10690838_10690988 0.27 AT1G30330.2
AT1G30330.1
AT1G30330.3
ARF6
auxin response factor 6
arTal_v1_Chr2_+_538250_538250 0.27 AT2G02120.1
PDF2.1
Scorpion toxin-like knottin superfamily protein
arTal_v1_Chr1_+_29220538_29220538 0.27 AT1G77740.2
PIP5K2
phosphatidylinositol-4-phosphate 5-kinase 2
arTal_v1_Chr4_-_3950602_3950602 0.27 AT4G06700.1
AT4G06700

arTal_v1_Chr3_-_11919546_11919546 0.26 AT3G30290.1
CYP702A8
cytochrome P450, family 702, subfamily A, polypeptide 8
arTal_v1_Chr5_+_9553300_9553300 0.26 AT5G27150.1
NHX1
Na+/H+ exchanger 1
arTal_v1_Chr3_-_9856212_9856212 0.26 AT3G26790.1
FUS3
AP2/B3-like transcriptional factor family protein
arTal_v1_Chr3_-_10651540_10651540 0.26 AT3G28415.1
AT3G28415.2
ABCB22
ABC transporter family protein
arTal_v1_Chr1_-_21412283_21412283 0.26 AT1G57800.2
AT1G57800.1
VIM5
zinc finger (C3HC4-type RING finger) family protein
arTal_v1_Chr4_-_14592825_14592825 0.25 AT4G29800.2
PLP8
PATATIN-like protein 8
arTal_v1_Chr5_+_15375846_15375846 0.25 AT5G38400.1
AT5G38400
hypothetical protein
arTal_v1_Chr5_+_8589457_8589457 0.25 AT5G24930.1
COL4
zinc finger CONSTANS-like protein
arTal_v1_Chr2_-_17935748_17935748 0.25 AT2G43140.1
AT2G43140.2
AT2G43140
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_-_11138010_11138010 0.25 AT3G29170.1
AT3G29170
transmembrane protein (DUF872)
arTal_v1_Chr1_+_24331373_24331428 0.25 AT1G65480.2
AT1G65480.1
FT
PEBP (phosphatidylethanolamine-binding protein) family protein
arTal_v1_Chr3_-_19731519_19731519 0.25 AT3G53232.1
RTFL1
ROTUNDIFOLIA like 1
arTal_v1_Chr4_-_11896480_11896480 0.25 AT4G22590.1
TPPG
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
arTal_v1_Chr3_-_16192365_16192365 0.24 AT3G44610.1
AT3G44610
Protein kinase superfamily protein
arTal_v1_Chr1_-_12434735_12434735 0.24 AT1G34140.1
PAB1
poly(A) binding protein 1
arTal_v1_Chr5_+_26030075_26030075 0.24 AT5G65158.1
PLAT3
Lipase/lipooxygenase, PLAT/LH2 family protein
arTal_v1_Chr1_+_28704963_28704963 0.24 AT1G76500.1
SOB3
Putative AT-hook DNA-binding family protein
arTal_v1_Chr3_-_6760939_6761007 0.24 AT3G19500.3
AT3G19500.2
AT3G19500.1
AT3G19500
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_+_4449259_4449259 0.24 AT3G13610.1
AT3G13610
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
arTal_v1_Chr3_-_3722741_3722741 0.24 AT3G11770.1
AT3G11770
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
arTal_v1_Chr4_+_15676240_15676240 0.24 AT4G32480.1
AT4G32480
sugar phosphate exchanger, putative (DUF506)
arTal_v1_Chr4_-_17797901_17797901 0.24 AT4G37850.1
AT4G37850
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr4_-_17797704_17797704 0.24 AT4G37850.2
AT4G37850
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_+_512220_512220 0.24 AT3G02480.1
AT3G02480
Late embryogenesis abundant protein (LEA) family protein
arTal_v1_Chr3_-_11137604_11137604 0.24 AT3G29170.2
AT3G29170
transmembrane protein (DUF872)
arTal_v1_Chr3_+_1593668_1593668 0.23 AT3G05500.2
AT3G05500
Rubber elongation factor protein (REF)
arTal_v1_Chr4_+_10281033_10281033 0.23 AT4G18680.1
AT4G18680
delay of germination protein
arTal_v1_Chr2_+_6292466_6292466 0.23 AT2G14700.1
AT2G14700
hypothetical protein
arTal_v1_Chr3_+_9546259_9546259 0.23 AT3G26120.1
TEL1
terminal EAR1-like 1
arTal_v1_Chr1_-_29993058_29993058 0.23 AT1G79700.4
WRI4
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr4_-_15896345_15896345 0.23 AT4G32920.1
AT4G32920
glycine-rich protein
arTal_v1_Chr3_+_1593182_1593182 0.23 AT3G05500.1
AT3G05500
Rubber elongation factor protein (REF)
arTal_v1_Chr3_+_129138_129138 0.23 AT3G01345.1
AT3G01345
Expressed protein
arTal_v1_Chr4_+_10398857_10398857 0.23 AT4G18980.1
AtS40-3
AtS40-3
arTal_v1_Chr4_-_17674589_17674589 0.22 AT4G37620.1
AT4G37620

arTal_v1_Chr5_+_21272824_21272824 0.22 AT5G52400.1
CYP715A1
cytochrome P450, family 715, subfamily A, polypeptide 1
arTal_v1_Chr1_+_9276381_9276381 0.22 AT1G26795.1
AT1G26795
Plant self-incompatibility protein S1 family
arTal_v1_Chr5_-_14307036_14307036 0.22 AT5G36293.1
AT5G36293

arTal_v1_Chr1_+_19330949_19330949 0.22 AT1G51990.2
AT1G51990.1
AT1G51990
O-methyltransferase family protein
arTal_v1_Chr3_+_22462613_22462613 0.22 AT3G60780.1
AT3G60780
hypothetical protein (DUF1442)
arTal_v1_Chr4_+_11738511_11738511 0.22 AT4G22180.1
AT4G22180
F-box protein (DUF295)
arTal_v1_Chr3_-_7501888_7501888 0.22 AT3G21320.1
AT3G21320
EARLY FLOWERING protein
arTal_v1_Chr2_-_18422839_18422839 0.22 AT2G44660.1
AT2G44660
ALG6, ALG8 glycosyltransferase family
arTal_v1_Chr2_-_16014991_16014991 0.21 AT2G38240.1
AT2G38240
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
arTal_v1_Chr1_-_21385709_21385709 0.21 AT1G57750.1
AT1G57750.2
CYP96A15
cytochrome P450, family 96, subfamily A, polypeptide 15
arTal_v1_Chr3_-_4123582_4123582 0.21 AT3G12920.1
BRG3
SBP (S-ribonuclease binding protein) family protein
arTal_v1_Chr3_-_6509343_6509343 0.21 AT3G18870.1
AT3G18870
Mitochondrial transcription termination factor family protein
arTal_v1_Chr5_-_24159780_24159780 0.21 AT5G60000.1
AT5G60000
transmembrane protein
arTal_v1_Chr4_+_15971109_15971109 0.21 AT4G33100.1
AT4G33100
protein phosphatase
arTal_v1_Chr4_+_9128732_9128732 0.21 AT4G16140.2
AT4G16140
proline-rich family protein
arTal_v1_Chr1_+_7272526_7272526 0.21 AT1G20900.1
ESC
Putative AT-hook DNA-binding family protein
arTal_v1_Chr2_+_1781886_1781886 0.21 AT2G05030.1
AT2G05030

arTal_v1_Chr3_-_12666444_12666444 0.21 AT3G31023.1
AT3G31023

arTal_v1_Chr3_+_6694114_6694114 0.20 AT3G19310.1
AT3G19310
PLC-like phosphodiesterases superfamily protein
arTal_v1_Chr4_+_16892909_16892909 0.20 AT4G35590.1
RKD5
RWP-RK domain-containing protein
arTal_v1_Chr1_+_20241226_20241245 0.20 AT1G54210.2
AT1G54210.1
AT1G54210.3
ATG12A
Ubiquitin-like superfamily protein
arTal_v1_Chr4_+_16893204_16893204 0.20 AT4G35590.2
RKD5
RWP-RK domain-containing protein
arTal_v1_Chr3_+_3591251_3591251 0.20 AT3G11420.1
AT3G11420
beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604)
arTal_v1_Chr1_+_2277555_2277555 0.20 AT1G07420.1
SMO2-1
sterol 4-alpha-methyl-oxidase 2-1
arTal_v1_Chr3_+_12504367_12504367 0.20 AT3G30814.1
AT3G30814

arTal_v1_Chr4_-_17913790_17913790 0.20 AT4G38190.1
CSLD4
cellulose synthase like D4
arTal_v1_Chr2_-_16846194_16846194 0.20 AT2G40330.1
PYL6
PYR1-like 6
arTal_v1_Chr4_-_11924230_11924230 0.20 AT4G22680.1
MYB85
myb domain protein 85
arTal_v1_Chr2_+_3604528_3604528 0.20 AT2G07880.1
AT2G07880

arTal_v1_Chr1_+_2277830_2277830 0.20 AT1G07420.2
SMO2-1
sterol 4-alpha-methyl-oxidase 2-1
arTal_v1_Chr1_+_9270952_9271029 0.19 AT1G26780.2
AT1G26780.1
MYB117
myb domain protein 117
arTal_v1_Chr1_+_28291698_28291698 0.19 AT1G75390.1
AT1G75390.2
bZIP44
basic leucine-zipper 44
arTal_v1_Chr1_+_17760142_17760142 0.19 AT1G48095.1
AT1G48095
nucleic acid-binding/zinc ion-binding protein
arTal_v1_Chr3_+_5187082_5187082 0.19 AT3G15357.1
AT3G15357
phosphopantothenoylcysteine decarboxylase subunit
arTal_v1_Chr5_+_8148544_8148544 0.19 AT5G24100.1
AT5G24100
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr3_-_18666691_18666691 0.19 AT3G50340.1
AT3G50340
hypothetical protein
arTal_v1_Chr4_-_13683594_13683594 0.19 AT4G27330.1
SPL
sporocyteless (SPL)
arTal_v1_Chr2_+_6399621_6399621 0.19 AT2G14890.2
AGP9
arabinogalactan protein 9
arTal_v1_Chr5_+_6692909_6692909 0.19 AT5G19810.1
AT5G19810
Proline-rich extensin-like family protein
arTal_v1_Chr1_-_8535660_8535660 0.19 AT1G24130.1
AT1G24130
Transducin/WD40 repeat-like superfamily protein
arTal_v1_Chr2_-_821291_821291 0.19 AT2G02835.1
AT2G02835
nucleic acid/zinc ion-binding protein
arTal_v1_Chr2_+_9695832_9695832 0.19 AT2G22790.1
AT2G22790
hypothetical protein
arTal_v1_Chr1_-_9079646_9079646 0.19 AT1G26240.1
AT1G26240
Proline-rich extensin-like family protein
arTal_v1_Chr3_-_2306615_2306615 0.19 AT3G07250.1
AT3G07250
RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein
arTal_v1_Chr2_-_17669836_17669836 0.19 AT2G42440.1
ASL15
Lateral organ boundaries (LOB) domain family protein
arTal_v1_Chr3_+_17855112_17855112 0.19 AT3G48230.1
AT3G48230
carboxyl-terminal peptidase (DUF239)
arTal_v1_Chr1_+_27157875_27157875 0.19 AT1G72175.2
AT1G72175.1
AT1G72175
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
arTal_v1_Chr2_+_6399405_6399405 0.19 AT2G14890.1
AGP9
arabinogalactan protein 9
arTal_v1_Chr2_+_10894253_10894253 0.18 AT2G25600.1
SPIK
Shaker pollen inward K+ channel
arTal_v1_Chr3_-_5144750_5144750 0.18 AT3G15280.1
AT3G15280
hypothetical protein
arTal_v1_Chr4_-_7368730_7368730 0.18 AT4G12430.1
TPPF
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
arTal_v1_Chr3_-_11086003_11086003 0.18 AT3G29110.1
AT3G29110
Terpenoid cyclases/Protein prenyltransferases superfamily protein
arTal_v1_Chr2_+_10566836_10566898 0.18 AT2G24790.1
AT2G24790.2
COL3
CONSTANS-like 3
arTal_v1_Chr1_+_3133008_3133008 0.18 AT1G09665.1
AT1G09665
Toll-Interleukin-Resistance (TIR) domain family protein
arTal_v1_Chr4_+_9128900_9128900 0.18 AT4G16140.1
AT4G16140
proline-rich family protein
arTal_v1_Chr4_-_13920352_13920378 0.18 AT4G27970.2
AT4G27970.3
AT4G27970.1
AT4G27970.6
AT4G27970.5
AT4G27970.4
SLAH2
SLAC1 homologue 2
arTal_v1_Chr5_+_25891449_25891449 0.18 AT5G64750.1
ABR1
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr4_+_13120824_13120824 0.18 AT4G25780.1
AT4G25780
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
arTal_v1_Chr4_+_17592996_17592996 0.18 AT4G37420.1
AT4G37420
glycosyltransferase family protein (DUF23)
arTal_v1_Chr1_+_5226982_5226982 0.18 AT1G15190.1
AT1G15190
Fasciclin-like arabinogalactan family protein
arTal_v1_Chr1_-_5158269_5158269 0.18 AT1G14950.1
AT1G14950
Polyketide cyclase/dehydrase and lipid transport superfamily protein
arTal_v1_Chr5_-_23409452_23409452 0.18 AT5G57785.2
AT5G57785
hypothetical protein
arTal_v1_Chr1_-_26146662_26146662 0.18 AT1G69540.3
AGL94
AGAMOUS-like 94
arTal_v1_Chr2_-_16797585_16797585 0.18 AT2G40220.1
ABI4
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_-_23409715_23409715 0.18 AT5G57785.1
AT5G57785
hypothetical protein
arTal_v1_Chr4_-_15591213_15591213 0.17 AT4G32290.1
AT4G32290
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
arTal_v1_Chr3_+_22434864_22434864 0.17 AT3G60690.1
AT3G60690
SAUR-like auxin-responsive protein family
arTal_v1_Chr4_-_12533924_12533924 0.17 AT4G24140.1
AT4G24140
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr1_+_24753589_24753589 0.17 AT1G66370.1
MYB113
myb domain protein 113
arTal_v1_Chr4_-_12992585_12992585 0.17 AT4G25420.2
AT4G25420.1
GA20OX1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
arTal_v1_Chr2_-_14320555_14320555 0.17 AT2G33847.2
AT2G33847
hypothetical protein
arTal_v1_Chr2_-_14320714_14320714 0.17 AT2G33847.1
AT2G33847
hypothetical protein
arTal_v1_Chr2_-_11139451_11139451 0.17 AT2G26160.1
AT2G26160
F-box SKIP23-like protein (DUF295)

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G18890

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0009099 valine biosynthetic process(GO:0009099)
0.1 0.7 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.1 0.5 GO:0006501 C-terminal protein lipidation(GO:0006501)
0.1 0.6 GO:0080065 4-alpha-methyl-delta7-sterol oxidation(GO:0080065)
0.1 0.3 GO:0017145 stem cell division(GO:0017145)
0.1 0.5 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.1 0.7 GO:1904276 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
0.1 0.5 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 0.3 GO:0070509 calcium ion import(GO:0070509)
0.1 0.4 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.5 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.1 0.3 GO:0010351 lithium ion transport(GO:0010351)
0.1 0.3 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116) negative regulation of isoprenoid metabolic process(GO:0045827)
0.1 0.2 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.1 0.3 GO:0048533 sporocyte differentiation(GO:0048533)
0.1 0.2 GO:0033506 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.1 0.9 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.1 0.5 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 1.3 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.2 GO:0018410 C-terminal protein amino acid modification(GO:0018410)
0.0 0.1 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.0 0.7 GO:0019915 lipid storage(GO:0019915)
0.0 0.5 GO:0016024 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.0 0.1 GO:0006474 N-terminal protein amino acid acetylation(GO:0006474) N-terminal peptidyl-methionine acetylation(GO:0017196)
0.0 0.4 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.3 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.0 0.3 GO:0007143 female meiotic division(GO:0007143)
0.0 0.1 GO:0048479 style development(GO:0048479)
0.0 0.8 GO:0009686 gibberellin biosynthetic process(GO:0009686)
0.0 0.4 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.1 GO:0080117 secondary growth(GO:0080117)
0.0 0.2 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.4 GO:1905177 tracheary element differentiation(GO:1905177)
0.0 0.2 GO:0010161 red light signaling pathway(GO:0010161)
0.0 0.2 GO:0010274 hydrotropism(GO:0010274)
0.0 0.3 GO:0001709 cell fate determination(GO:0001709)
0.0 0.2 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.2 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.0 0.1 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.0 0.2 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.6 GO:0009958 positive gravitropism(GO:0009958)
0.0 0.1 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.6 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.1 GO:0048655 anther morphogenesis(GO:0048654) anther wall tapetum morphogenesis(GO:0048655)
0.0 0.2 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.2 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.1 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.0 0.1 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.0 0.3 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.7 GO:0009873 ethylene-activated signaling pathway(GO:0009873)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0034274 Atg12-Atg5-Atg16 complex(GO:0034274)
0.1 0.7 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 1.2 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.1 GO:0031417 N-terminal protein acetyltransferase complex(GO:0031414) NatC complex(GO:0031417)
0.0 0.1 GO:0005687 U4 snRNP(GO:0005687)
0.0 0.4 GO:0031355 intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359)
0.0 0.1 GO:0071556 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.2 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.0 0.5 GO:0005764 lysosome(GO:0005764)
0.0 0.1 GO:0098554 integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0052656 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.2 0.7 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.7 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.1 0.7 GO:0003680 AT DNA binding(GO:0003680)
0.1 0.6 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 0.5 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.5 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.1 0.6 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.1 1.3 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.3 GO:0005221 intracellular cyclic nucleotide activated cation channel activity(GO:0005221) cyclic nucleotide-gated ion channel activity(GO:0043855)
0.0 0.9 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.5 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.2 GO:0004671 protein C-terminal carboxyl O-methyltransferase activity(GO:0003880) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity(GO:0004671)
0.0 0.4 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.2 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.0 0.1 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.0 0.5 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.1 GO:0015245 fatty acid transporter activity(GO:0015245)
0.0 0.2 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.0 0.1 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.6 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.2 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.1 GO:0008460 dTDP-glucose 4,6-dehydratase activity(GO:0008460)
0.0 0.2 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 0.1 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.2 GO:0008028 monocarboxylic acid transmembrane transporter activity(GO:0008028)
0.0 0.3 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.2 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.2 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.5 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.1 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 0.3 GO:0010333 terpene synthase activity(GO:0010333)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.1 0.3 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway
0.0 0.1 PID HDAC CLASSII PATHWAY Signaling events mediated by HDAC Class II
0.0 0.1 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.0 0.1 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism