Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT4G23980

Z-value: 0.21

Transcription factors associated with AT4G23980

Gene Symbol Gene ID Gene Info
AT4G23980
AT4G23980 auxin response factor 9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ARF9arTal_v1_Chr4_+_12451143_124511980.273.5e-01Click!

Activity profile of AT4G23980 motif

Sorted Z-values of AT4G23980 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr5_-_5741500_5741500 0.22 AT5G17420.1
IRX3
Cellulose synthase family protein
arTal_v1_Chr4_-_10316886_10316886 0.19 AT4G18780.1
IRX1
cellulose synthase family protein
arTal_v1_Chr3_+_3203988_3203988 0.17 AT3G10340.1
PAL4
phenylalanine ammonia-lyase 4
arTal_v1_Chr4_-_16063070_16063251 0.15 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
arTal_v1_Chr5_+_5084524_5084695 0.15 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
arTal_v1_Chr5_+_17714390_17714390 0.09 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
arTal_v1_Chr5_+_17715687_17715687 0.05 AT5G44030.3
CESA4
cellulose synthase A4
arTal_v1_Chr3_-_2578276_2578276 0.05 AT3G08500.1
MYB83
myb domain protein 83
arTal_v1_Chr5_+_24396981_24396981 0.02 AT5G60690.1
REV
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
arTal_v1_Chr5_-_4065075_4065075 0.00 AT5G12870.1
MYB46
myb domain protein 46

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23980

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.0 0.2 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.0 0.2 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.0 0.1 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.1 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0010330 cellulose synthase complex(GO:0010330)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.0 0.1 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0 0.6 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)