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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G25490

Z-value: 0.68

Transcription factors associated with AT4G25490

Gene Symbol Gene ID Gene Info
AT4G25490
AT4G25490 C-repeat/DRE binding factor 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
CBF1arTal_v1_Chr4_-_13022996_130229960.253.8e-01Click!

Activity profile of AT4G25490 motif

Sorted Z-values of AT4G25490 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr3_+_6840281_6840281 0.69 AT3G19680.1
AT3G19680
hypothetical protein (DUF1005)
arTal_v1_Chr1_+_6130025_6130025 0.68 AT1G17810.1
BETA-TIP
beta-tonoplast intrinsic protein
arTal_v1_Chr1_+_18542061_18542061 0.58 AT1G50040.1
AT1G50040
formin-like protein, putative (DUF1005)
arTal_v1_Chr1_+_1244947_1244947 0.54 AT1G04560.1
AT1G04560
AWPM-19-like family protein
arTal_v1_Chr1_-_8559066_8559066 0.54 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr3_+_20354351_20354351 0.52 AT3G54940.3
AT3G54940.2
AT3G54940
Papain family cysteine protease
arTal_v1_Chr1_-_20458631_20458631 0.51 AT1G54860.1
AT1G54860
Glycoprotein membrane precursor GPI-anchored
arTal_v1_Chr1_+_3777236_3777236 0.51 AT1G11260.1
STP1
sugar transporter 1
arTal_v1_Chr3_-_7656053_7656053 0.50 AT3G21720.1
ICL
isocitrate lyase
arTal_v1_Chr4_-_18206684_18206684 0.49 AT4G39070.1
BZS1
B-box zinc finger family protein
arTal_v1_Chr1_+_4433605_4433605 0.47 AT1G12990.1
AT1G12990
beta-1,4-N-acetylglucosaminyltransferase family protein
arTal_v1_Chr1_+_27521944_27521944 0.47 AT1G73190.1
TIP3%3B1
Aquaporin-like superfamily protein
arTal_v1_Chr4_+_15819489_15819489 0.46 AT4G32800.1
AT4G32800
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr4_-_13022996_13022996 0.46 AT4G25490.1
CBF1
C-repeat/DRE binding factor 1
arTal_v1_Chr2_-_18821889_18821889 0.46 AT2G45680.1
TCP9
TCP family transcription factor
arTal_v1_Chr5_-_2090430_2090430 0.45 AT5G06760.1
LEA4-5
Late Embryogenesis Abundant 4-5
arTal_v1_Chr5_+_3783930_3783930 0.45 AT5G11740.1
AGP15
arabinogalactan protein 15
arTal_v1_Chr4_-_12551331_12551378 0.45 AT4G24180.4
AT4G24180.5
AT4G24180.2
AT4G24180.3
AT4G24180.1
AT4G24180.6
TLP1
THAUMATIN-LIKE PROTEIN 1
arTal_v1_Chr1_+_28472357_28472357 0.43 AT1G75830.1
LCR67
low-molecular-weight cysteine-rich 67
arTal_v1_Chr1_-_3241863_3241863 0.43 AT1G09950.1
RAS1
RESPONSE TO ABA AND SALT 1
arTal_v1_Chr1_+_6315636_6315636 0.43 AT1G18350.1
MKK7
MAP kinase kinase 7
arTal_v1_Chr2_-_8971339_8971339 0.42 AT2G20835.1
AT2G20835
hypothetical protein
arTal_v1_Chr1_+_28174187_28174187 0.41 AT1G75030.1
TLP-3
thaumatin-like protein 3
arTal_v1_Chr1_+_6927736_6927736 0.41 AT1G19960.1
AT1G19960
transcription factor
arTal_v1_Chr3_+_10576961_10576961 0.41 AT3G28310.1
AT3G28310
hypothetical protein (DUF677)
arTal_v1_Chr4_+_12699973_12699973 0.40 AT4G24600.1
AT4G24600
hypothetical protein
arTal_v1_Chr5_-_8406132_8406151 0.40 AT5G24570.1
AT5G24575.1
AT5G24570
AT5G24575
hypothetical protein
hypothetical protein
arTal_v1_Chr3_-_222827_222827 0.40 AT3G01570.1
AT3G01570
Oleosin family protein
arTal_v1_Chr1_-_6782216_6782216 0.40 AT1G19610.1
PDF1.4
defensin-like protein
arTal_v1_Chr4_-_9331646_9331646 0.40 AT4G16563.1
AT4G16563
Eukaryotic aspartyl protease family protein
arTal_v1_Chr1_-_5645443_5645443 0.40 AT1G16510.1
AT1G16510
SAUR-like auxin-responsive protein family
arTal_v1_Chr3_+_5121303_5121303 0.40 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
arTal_v1_Chr2_-_16563441_16563441 0.39 AT2G39710.1
AT2G39710
Eukaryotic aspartyl protease family protein
arTal_v1_Chr4_-_14883583_14883583 0.38 AT4G30440.1
GAE1
UDP-D-glucuronate 4-epimerase 1
arTal_v1_Chr4_+_10372658_10372658 0.38 AT4G18940.1
AT4G18940
RNA ligase/cyclic nucleotide phosphodiesterase family protein
arTal_v1_Chr4_-_13069762_13069762 0.37 AT4G25620.1
AT4G25620
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr3_-_2130451_2130451 0.37 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr1_-_4243201_4243229 0.37 AT1G12440.1
AT1G12440.3
AT1G12440
A20/AN1-like zinc finger family protein
arTal_v1_Chr3_+_5505360_5505360 0.37 AT3G16240.1
DELTA-TIP
delta tonoplast integral protein
arTal_v1_Chr1_-_4242963_4242963 0.37 AT1G12440.2
AT1G12440
A20/AN1-like zinc finger family protein
arTal_v1_Chr5_+_22716917_22716917 0.36 AT5G56100.1
AT5G56100
glycine-rich protein / oleosin
arTal_v1_Chr3_-_7527677_7527677 0.36 AT3G21370.1
BGLU19
beta glucosidase 19
arTal_v1_Chr4_-_17606924_17607050 0.36 AT4G37450.1
AT4G37450.2
AGP18
arabinogalactan protein 18
arTal_v1_Chr3_-_2264721_2264721 0.36 AT3G07150.1
AT3G07150
amino acid-ligase
arTal_v1_Chr4_-_15369724_15369724 0.36 AT4G31760.1
AT4G31760
peroxidase superfamily protein
arTal_v1_Chr4_-_14859503_14859503 0.35 AT4G30370.1
AT4G30370
RING/U-box superfamily protein
arTal_v1_Chr3_+_18481027_18481027 0.35 AT3G49820.1
AT3G49820
hypothetical protein
arTal_v1_Chr3_-_4834015_4834015 0.35 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
arTal_v1_Chr1_-_16838562_16838562 0.35 AT1G44350.1
ILL6
IAA-amino acid hydrolase ILR1-like 6
arTal_v1_Chr1_-_13031375_13031375 0.35 AT1G35430.1
AT1G35430
transmembrane protein
arTal_v1_Chr2_+_11985687_11985687 0.35 AT2G28120.1
AT2G28120
Major facilitator superfamily protein
arTal_v1_Chr1_+_5940292_5940292 0.34 AT1G17345.1
AT1G17345
SAUR-like auxin-responsive protein family
arTal_v1_Chr4_-_12886695_12886740 0.34 AT4G25100.1
AT4G25100.3
AT4G25100.4
FSD1
Fe superoxide dismutase 1
arTal_v1_Chr1_+_18138169_18138169 0.34 AT1G49032.2
AT1G49032
hypothetical protein
arTal_v1_Chr3_+_2347186_2347186 0.34 AT3G07350.1
AT3G07350
sulfate/thiosulfate import ATP-binding protein, putative (DUF506)
arTal_v1_Chr2_+_10072057_10072057 0.34 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
arTal_v1_Chr5_+_9667311_9667311 0.33 AT5G27370.1
AT5G27370
inactive Serine/Threonine-kinase, putative (DUF679)
arTal_v1_Chr5_+_5211719_5211719 0.33 AT5G15970.1
KIN2
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)
arTal_v1_Chr5_-_24256285_24256285 0.33 AT5G60260.1
AT5G60260
hypothetical protein
arTal_v1_Chr3_+_6119707_6119707 0.33 AT3G17860.4
AT3G17860.1
JAZ3
jasmonate-zim-domain protein 3
arTal_v1_Chr1_-_9753952_9753952 0.33 AT1G27990.1
AT1G27990
transmembrane protein
arTal_v1_Chr1_-_30202349_30202349 0.32 AT1G80340.1
GA3OX2
gibberellin 3-oxidase 2
arTal_v1_Chr1_+_10244453_10244453 0.32 AT1G29290.1
AT1G29290
B-cell lymphoma 6 protein
arTal_v1_Chr2_-_18191280_18191348 0.32 AT2G43920.3
AT2G43920.4
AT2G43920.1
AT2G43920.2
HOL2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr2_-_12239124_12239146 0.32 AT2G28560.4
AT2G28560.2
AT2G28560.6
AT2G28560.5
AT2G28560.1
RAD51B
DNA repair (Rad51) family protein
arTal_v1_Chr5_+_25233881_25233881 0.32 AT5G62865.1
AT5G62865
hypothetical protein
arTal_v1_Chr4_-_17979740_17979885 0.32 AT4G38400.1
AT4G38401.1
EXLA2
AT4G38401
expansin-like A2
hypothetical protein
arTal_v1_Chr4_-_16806830_16806830 0.32 AT4G35320.1
AT4G35320
hypothetical protein
arTal_v1_Chr5_+_26854022_26854022 0.32 AT5G67300.1
MYBR1
myb domain protein r1
arTal_v1_Chr5_-_3728726_3728726 0.32 AT5G11590.1
TINY2
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr3_-_4657723_4657723 0.32 AT3G14060.1
AT3G14060
hypothetical protein
arTal_v1_Chr5_-_19977620_19977620 0.32 AT5G49280.1
AT5G49280
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_+_801527_801527 0.32 AT2G02810.1
UTR1
UDP-galactose transporter 1
arTal_v1_Chr5_-_1034686_1034686 0.31 AT5G03860.1
MLS
malate synthase
arTal_v1_Chr1_+_18137977_18137977 0.31 AT1G49032.1
AT1G49032
hypothetical protein
arTal_v1_Chr5_-_1214439_1214439 0.31 AT5G04330.1
CYP84A4
Cytochrome P450 superfamily protein
arTal_v1_Chr3_-_980562_980562 0.31 AT3G03830.1
SAUR28
SAUR-like auxin-responsive protein family
arTal_v1_Chr1_+_27127170_27127170 0.31 AT1G72100.1
AT1G72100
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
arTal_v1_Chr4_+_18413775_18413775 0.31 AT4G39675.1
AT4G39675
hypothetical protein
arTal_v1_Chr4_+_16944878_16944941 0.31 AT4G35770.1
AT4G35770.2
AT4G35770.5
AT4G35770.6
AT4G35770.4
AT4G35770.3
SEN1
Rhodanese/Cell cycle control phosphatase superfamily protein
arTal_v1_Chr5_-_1217362_1217362 0.31 AT5G04340.1
ZAT6
6
arTal_v1_Chr2_-_7768040_7768040 0.31 AT2G17880.1
AT2G17880
Chaperone DnaJ-domain superfamily protein
arTal_v1_Chr5_+_5209717_5209717 0.31 AT5G15960.1
KIN1
stress-responsive protein (KIN1) / stress-induced protein (KIN1)
arTal_v1_Chr5_-_1034973_1034973 0.30 AT5G03860.2
MLS
malate synthase
arTal_v1_Chr5_-_4554597_4554597 0.30 AT5G14110.1
AT5G14110
peroxidase (DUF 3339)
arTal_v1_Chr2_-_19650287_19650313 0.30 AT2G48030.1
AT2G48030.2
AT2G48030
DNAse I-like superfamily protein
arTal_v1_Chr4_-_12886902_12887011 0.30 AT4G25100.2
AT4G25100.5
FSD1
Fe superoxide dismutase 1
arTal_v1_Chr5_+_16202142_16202142 0.30 AT5G40460.1
AT5G40460
cyclin-dependent kinase inhibitor SMR3-like protein
arTal_v1_Chr5_-_17831336_17831336 0.30 AT5G44260.1
AT5G44260
Zinc finger C-x8-C-x5-C-x3-H type family protein
arTal_v1_Chr1_-_27834207_27834207 0.30 AT1G74010.1
AT1G74010
Calcium-dependent phosphotriesterase superfamily protein
arTal_v1_Chr2_-_16459014_16459014 0.30 AT2G39415.1
AT2G39415
F-box family protein
arTal_v1_Chr5_-_21889254_21889254 0.30 AT5G53905.1
AT5G53905
prolamin-like protein
arTal_v1_Chr3_+_5471735_5471735 0.30 AT3G16150.1
ASPGB1
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
arTal_v1_Chr5_+_24480291_24480291 0.30 AT5G60850.1
OBP4
OBF binding protein 4
arTal_v1_Chr3_+_6120029_6120029 0.30 AT3G17860.3
AT3G17860.2
JAZ3
jasmonate-zim-domain protein 3
arTal_v1_Chr1_-_17334412_17334412 0.30 AT1G47280.1
AT1G47280
hypothetical protein
arTal_v1_Chr1_-_7040231_7040231 0.30 AT1G20330.1
SMT2
sterol methyltransferase 2
arTal_v1_Chr2_+_9917443_9917520 0.30 AT2G23310.1
AT2G23310.2
ATRER1C1
Rer1 family protein
arTal_v1_Chr5_+_14912659_14912659 0.30 AT5G37540.1
AT5G37540
Eukaryotic aspartyl protease family protein
arTal_v1_Chr1_-_490627_490627 0.30 AT1G02405.1
AT1G02405
proline-rich family protein
arTal_v1_Chr4_-_14439723_14439769 0.29 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
arTal_v1_Chr5_-_122507_122525 0.29 AT5G01300.2
AT5G01300.1
AT5G01300.3
AT5G01300
PEBP (phosphatidylethanolamine-binding protein) family protein
arTal_v1_Chr2_+_14710754_14710754 0.29 AT2G34870.1
MEE26
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_+_17728479_17728479 0.29 AT2G42580.1
TTL3
tetratricopetide-repeat thioredoxin-like 3
arTal_v1_Chr2_-_19440355_19440487 0.29 AT2G47370.2
AT2G47370.1
AT2G47370
Calcium-dependent phosphotriesterase superfamily protein
arTal_v1_Chr3_-_2137280_2137350 0.29 AT3G06770.4
AT3G06770.3
AT3G06770
Pectin lyase-like superfamily protein
arTal_v1_Chr1_-_28383769_28383769 0.29 AT1G75590.1
AT1G75590
SAUR-like auxin-responsive protein family
arTal_v1_Chr2_-_15345673_15345673 0.29 AT2G36590.1
AT2G36590.2
ProT3
proline transporter 3
arTal_v1_Chr3_+_22514027_22514027 0.29 AT3G60930.2
AT3G60930

arTal_v1_Chr1_-_13456336_13456336 0.29 AT1G36060.1
AT1G36060
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_-_11164928_11164928 0.29 AT1G31240.1
AT1G31240
Bromodomain transcription factor
arTal_v1_Chr1_-_3667139_3667139 0.29 AT1G10970.2
ZIP4
zinc transporter
arTal_v1_Chr3_-_2137012_2137085 0.29 AT3G06770.1
AT3G06770.5
AT3G06770
Pectin lyase-like superfamily protein
arTal_v1_Chr3_+_4399836_4399836 0.28 AT3G13500.1
AT3G13500
hypothetical protein
arTal_v1_Chr2_-_19512728_19512728 0.28 AT2G47560.1
AT2G47560
RING/U-box superfamily protein
arTal_v1_Chr2_-_18190665_18190665 0.28 AT2G43920.6
AT2G43920.5
HOL2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr5_-_14586835_14586835 0.28 AT5G36937.1
AT5G36937

arTal_v1_Chr4_+_14368877_14368877 0.28 AT4G29140.1
ADS1
MATE efflux family protein
arTal_v1_Chr2_-_12238973_12238973 0.28 AT2G28560.3
RAD51B
DNA repair (Rad51) family protein
arTal_v1_Chr1_+_29214220_29214220 0.28 AT1G77730.1
AT1G77730
Pleckstrin homology (PH) domain superfamily protein
arTal_v1_Chr1_-_983544_983544 0.28 AT1G03870.1
FLA9
FASCICLIN-like arabinoogalactan 9
arTal_v1_Chr4_+_9349741_9349741 0.28 AT4G16600.1
PGSIP8
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr5_-_7084859_7084859 0.28 AT5G20885.1
AT5G20885
RING/U-box superfamily protein
arTal_v1_Chr1_-_14172040_14172106 0.28 AT1G37140.1
AT1G37140.2
MCT1
MEI2 C-terminal RRM only like 1
arTal_v1_Chr3_+_19938564_19938564 0.28 AT3G53820.1
AT3G53820
C2H2 and C2HC zinc fingers superfamily protein
arTal_v1_Chr3_+_8997370_8997370 0.28 AT3G24650.1
ABI3
AP2/B3-like transcriptional factor family protein
arTal_v1_Chr5_+_20130752_20130752 0.28 AT5G49600.1
AT5G49600
plant/protein (Protein of unknown function, DUF538)
arTal_v1_Chr5_-_24000166_24000166 0.27 AT5G59550.2
RDUF2
zinc finger (C3HC4-type RING finger) family protein
arTal_v1_Chr5_-_23263457_23263479 0.27 AT5G57400.1
AT5G57400.2
AT5G57400
transmembrane protein
arTal_v1_Chr4_-_17759746_17759746 0.27 AT4G37780.1
MYB87
myb domain protein 87
arTal_v1_Chr1_-_3444360_3444360 0.27 AT1G10470.1
ARR4
response regulator 4
arTal_v1_Chr5_-_19939797_19939797 0.27 AT5G49170.1
AT5G49170
hypothetical protein
arTal_v1_Chr4_-_17355891_17356037 0.27 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
arTal_v1_Chr4_+_1158783_1158848 0.27 AT4G02655.2
AT4G02655.1
AT4G02655
transmembrane protein
arTal_v1_Chr2_-_10850797_10850797 0.27 AT2G25490.1
EBF1
EIN3-binding F box protein 1
arTal_v1_Chr3_-_3108266_3108385 0.27 AT3G10080.1
AT3G10080.2
AT3G10080
RmlC-like cupins superfamily protein
arTal_v1_Chr5_+_8541713_8541751 0.27 AT5G24860.3
AT5G24860.1
FPF1
flowering promoting factor 1
arTal_v1_Chr5_-_3018342_3018342 0.27 AT5G09730.1
BXL3
beta-xylosidase 3
arTal_v1_Chr1_-_22067076_22067076 0.27 AT1G59940.1
ARR3
response regulator 3
arTal_v1_Chr3_+_4408925_4408925 0.27 AT3G13520.1
AGP12
arabinogalactan protein 12
arTal_v1_Chr3_-_314120_314120 0.27 AT3G01900.1
CYP94B2
cytochrome P450, family 94, subfamily B, polypeptide 2
arTal_v1_Chr1_+_29782273_29782273 0.27 AT1G79170.1
AT1G79170
transmembrane protein
arTal_v1_Chr1_-_22067233_22067233 0.27 AT1G59940.2
ARR3
response regulator 3
arTal_v1_Chr1_+_1796778_1796778 0.27 AT1G05920.1
AT1G05920
B3 domain protein (DUF313)
arTal_v1_Chr4_+_5792137_5792137 0.27 AT4G09030.1
AGP10
arabinogalactan protein 10
arTal_v1_Chr5_-_23999837_23999837 0.26 AT5G59550.1
RDUF2
zinc finger (C3HC4-type RING finger) family protein
arTal_v1_Chr4_-_18098633_18098633 0.26 AT4G38770.1
PRP4
proline-rich protein 4
arTal_v1_Chr4_-_18033584_18033599 0.26 AT4G38570.1
AT4G38570.2
AT4G38570.4
AT4G38570.3
PIS2
Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2
arTal_v1_Chr3_-_3677279_3677279 0.26 AT3G11650.1
NHL2
NDR1/HIN1-like 2
arTal_v1_Chr2_+_2055519_2055519 0.26 AT2G05580.1
AT2G05580
Glycine-rich protein family
arTal_v1_Chr3_-_21760390_21760390 0.26 AT3G58850.1
PAR2
phy rapidly regulated 2
arTal_v1_Chr5_+_2133918_2133918 0.26 AT5G06870.1
PGIP2
polygalacturonase inhibiting protein 2
arTal_v1_Chr1_-_20578308_20578308 0.26 AT1G55152.1
AT1G55152
hypothetical protein
arTal_v1_Chr4_+_6335919_6335919 0.26 AT4G10160.1
AT4G10160
RING/U-box superfamily protein
arTal_v1_Chr2_+_18326954_18326954 0.26 AT2G44400.1
AT2G44400
Cysteine/Histidine-rich C1 domain family protein
arTal_v1_Chr3_-_17910736_17910738 0.26 AT3G48360.3
AT3G48360.1
AT3G48360.2
BT2
BTB and TAZ domain protein 2
arTal_v1_Chr1_-_3443957_3443957 0.26 AT1G10470.3
AT1G10470.2
ARR4
response regulator 4
arTal_v1_Chr1_-_24201231_24201346 0.26 AT1G65130.5
AT1G65130.3
AT1G65130
Ubiquitin carboxyl-terminal hydrolase-related protein
arTal_v1_Chr4_+_18202607_18202607 0.26 AT4G39060.1
AT4G39060
LOW protein: coatomer subunit alpha-1-like protein
arTal_v1_Chr4_+_160643_160643 0.26 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
arTal_v1_Chr2_-_15474717_15474828 0.26 AT2G36870.2
AT2G36870.1
XTH32
xyloglucan endotransglucosylase/hydrolase 32
arTal_v1_Chr5_-_26607012_26607012 0.26 AT5G66650.1
AT5G66650
calcium uniporter (DUF607)
arTal_v1_Chr3_+_765420_765420 0.26 AT3G03280.1
AT3G03280
hypothetical protein
arTal_v1_Chr5_-_3643010_3643010 0.26 AT5G11416.1
AT5G11416
hypothetical protein
arTal_v1_Chr1_-_24201022_24201022 0.26 AT1G65130.1
AT1G65130.2
AT1G65130.4
AT1G65130
Ubiquitin carboxyl-terminal hydrolase-related protein
arTal_v1_Chr3_-_7141353_7141353 0.25 AT3G20470.1
GRP5
glycine-rich protein 5
arTal_v1_Chr3_-_2137641_2137641 0.25 AT3G06770.2
AT3G06770
Pectin lyase-like superfamily protein
arTal_v1_Chr4_+_9854322_9854322 0.25 AT4G17700.1
AT4G17700
hypothetical protein
arTal_v1_Chr2_-_10526059_10526059 0.25 AT2G24720.1
GLR2.2
glutamate receptor 2.2
arTal_v1_Chr2_-_9839824_9839824 0.25 AT2G23100.1
AT2G23100
Cysteine/Histidine-rich C1 domain family protein
arTal_v1_Chr3_-_7315883_7315883 0.25 AT3G20880.1
WIP4
WIP domain protein 4
arTal_v1_Chr2_+_17624993_17624993 0.25 AT2G42310.1
AT2G42310
ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) protein
arTal_v1_Chr2_+_10344338_10344338 0.25 AT2G24310.1
AT2G24310
TPRXL
arTal_v1_Chr4_+_13320408_13320408 0.25 AT4G26330.1
AT4G26330.2
UNE17
Subtilisin-like serine endopeptidase family protein
arTal_v1_Chr1_+_21652988_21652988 0.25 AT1G58340.1
ZF14
MATE efflux family protein
arTal_v1_Chr3_-_1652149_1652149 0.25 AT3G05660.1
RLP33
receptor like protein 33
arTal_v1_Chr3_-_4227528_4227528 0.25 AT3G13140.1
AT3G13140
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr5_-_26129547_26129547 0.25 AT5G65390.1
AGP7
arabinogalactan protein 7
arTal_v1_Chr5_-_5624800_5624800 0.25 AT5G17100.1
AT5G17100
Cystatin/monellin superfamily protein
arTal_v1_Chr4_+_12827856_12827937 0.25 AT4G24960.1
AT4G24960.3
AT4G24960.2
HVA22D
HVA22 homologue D
arTal_v1_Chr1_+_8720309_8720309 0.25 AT1G24600.1
AT1G24600
hypothetical protein
arTal_v1_Chr5_+_15522650_15522650 0.25 AT5G38750.1
AT5G38750
asparaginyl-tRNA synthetase family
arTal_v1_Chr1_-_2321664_2321664 0.25 AT1G07540.1
TRFL2
TRF-like 2
arTal_v1_Chr4_+_9727687_9727740 0.24 AT4G17440.2
AT4G17440.3
AT4G17440.4
AT4G17440.1
AT4G17440
chromogranin (DUF1639)
arTal_v1_Chr3_-_6255301_6255301 0.24 AT3G18235.1
AT3G18235
hypothetical protein
arTal_v1_Chr1_+_27402814_27402878 0.24 AT1G72820.1
AT1G72820.2
AT1G72820
Mitochondrial substrate carrier family protein
arTal_v1_Chr2_-_15846051_15846051 0.24 AT2G37810.1
AT2G37810
Cysteine/Histidine-rich C1 domain family protein
arTal_v1_Chr1_+_29272074_29272205 0.24 AT1G77850.1
AT1G77850.2
ARF17
auxin response factor 17
arTal_v1_Chr1_+_2927502_2927502 0.24 AT1G09070.1
SRC2
soybean gene regulated by cold-2
arTal_v1_Chr3_-_8123432_8123432 0.24 AT3G22920.1
AT3G22920
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
arTal_v1_Chr5_+_7138762_7138762 0.24 AT5G21020.2
AT5G21020
transmembrane protein
arTal_v1_Chr5_-_3808273_3808273 0.24 AT5G11800.1
KEA6
K+ efflux antiporter 6
arTal_v1_Chr5_+_21943983_21943983 0.24 AT5G54070.1
HSFA9
heat shock transcription factor A9
arTal_v1_Chr3_+_4603885_4603885 0.24 AT3G13950.1
AT3G13950
ankyrin
arTal_v1_Chr3_+_19474945_19474945 0.24 AT3G52525.1
OFP6
ovate family protein 6
arTal_v1_Chr3_-_23324281_23324283 0.24 AT3G63120.2
AT3G63120.1
CYCP1%3B1
cyclin p1;1
arTal_v1_Chr4_+_8410054_8410054 0.24 AT4G14670.1
CLPB2
casein lytic proteinase B2
arTal_v1_Chr3_-_23276630_23276630 0.24 AT3G62980.1
TIR1
F-box/RNI-like superfamily protein
arTal_v1_Chr5_+_1635478_1635478 0.24 AT5G05530.1
AT5G05530
RING/U-box superfamily protein
arTal_v1_Chr2_-_12188293_12188293 0.24 AT2G28500.1
LBD11
LOB domain-containing protein 11

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G25490

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.1 GO:0006097 glyoxylate cycle(GO:0006097)
0.1 0.4 GO:0015840 urea transport(GO:0015840)
0.1 0.5 GO:0098740 pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
0.1 0.8 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.1 0.3 GO:0016540 protein autoprocessing(GO:0016540)
0.1 0.4 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.1 0.6 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458)
0.1 0.3 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.3 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.1 0.3 GO:0006063 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.1 0.6 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.1 0.5 GO:1990019 protein storage vacuole organization(GO:1990019)
0.1 0.4 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.1 0.5 GO:0048830 adventitious root development(GO:0048830)
0.1 0.4 GO:0072708 response to sorbitol(GO:0072708)
0.1 0.1 GO:0090069 regulation of ribosome biogenesis(GO:0090069)
0.1 0.2 GO:0071422 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.1 0.2 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.1 0.6 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.1 0.2 GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)
0.1 0.4 GO:0006013 mannose metabolic process(GO:0006013)
0.1 0.2 GO:0044277 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.1 0.4 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.1 0.3 GO:0015824 proline transport(GO:0015824)
0.1 0.6 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.1 0.4 GO:0009187 cyclic nucleotide metabolic process(GO:0009187)
0.1 0.2 GO:0010507 negative regulation of autophagy(GO:0010507)
0.1 0.4 GO:0080187 floral organ senescence(GO:0080187)
0.1 0.2 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.1 0.6 GO:0015749 monosaccharide transport(GO:0015749)
0.1 0.3 GO:0015785 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.1 0.2 GO:1902000 homogentisate metabolic process(GO:1901999) homogentisate catabolic process(GO:1902000)
0.1 0.4 GO:0010047 fruit dehiscence(GO:0010047)
0.1 0.3 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.1 0.3 GO:0000379 tRNA-type intron splice site recognition and cleavage(GO:0000379)
0.1 0.2 GO:0015802 basic amino acid transport(GO:0015802)
0.1 0.7 GO:0010158 abaxial cell fate specification(GO:0010158)
0.1 0.3 GO:0046622 positive regulation of organ growth(GO:0046622)
0.1 0.1 GO:0019692 pyrimidine deoxyribonucleoside triphosphate metabolic process(GO:0009211) pyrimidine deoxyribonucleotide metabolic process(GO:0009219) pyrimidine deoxyribonucleotide biosynthetic process(GO:0009221) 2'-deoxyribonucleotide biosynthetic process(GO:0009265) 2'-deoxyribonucleotide metabolic process(GO:0009394) deoxyribose phosphate metabolic process(GO:0019692) deoxyribose phosphate biosynthetic process(GO:0046385)
0.1 0.8 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.1 GO:0043181 cellular sodium ion homeostasis(GO:0006883) vacuolar sequestering(GO:0043181)
0.0 0.1 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.0 0.3 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.0 0.1 GO:0042908 xenobiotic transport(GO:0042908)
0.0 0.3 GO:0043570 meiotic mismatch repair(GO:0000710) maintenance of DNA repeat elements(GO:0043570)
0.0 0.3 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.2 GO:0019343 cysteine biosynthetic process via cystathionine(GO:0019343)
0.0 0.1 GO:2000082 regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.0 0.4 GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation(GO:0006388)
0.0 0.1 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.0 0.6 GO:0046620 regulation of organ growth(GO:0046620)
0.0 0.2 GO:0090481 sialic acid transport(GO:0015739) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481)
0.0 0.2 GO:0080024 indolebutyric acid metabolic process(GO:0080024)
0.0 0.2 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 0.5 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.3 GO:0033523 histone H2B ubiquitination(GO:0033523)
0.0 0.4 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.1 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.0 0.5 GO:0009554 megasporogenesis(GO:0009554)
0.0 0.4 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.0 0.2 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.0 0.1 GO:0009264 deoxyribonucleotide catabolic process(GO:0009264)
0.0 0.1 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.0 0.3 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.3 GO:0009799 specification of symmetry(GO:0009799)
0.0 0.3 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.1 GO:0010481 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.0 0.8 GO:0019915 lipid storage(GO:0019915)
0.0 0.1 GO:0010220 positive regulation of vernalization response(GO:0010220)
0.0 0.1 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
0.0 0.2 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.2 GO:0046949 fatty-acyl-CoA biosynthetic process(GO:0046949)
0.0 0.2 GO:0015940 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.0 0.1 GO:0019567 pentose biosynthetic process(GO:0019322) arabinose biosynthetic process(GO:0019567)
0.0 0.3 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.3 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.0 0.2 GO:0006591 ornithine metabolic process(GO:0006591)
0.0 0.2 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.1 GO:0033386 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0 0.3 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.5 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.0 0.1 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.6 GO:0046688 response to copper ion(GO:0046688)
0.0 0.1 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.0 0.1 GO:0070537 histone H2A K63-linked deubiquitination(GO:0070537)
0.0 0.1 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.0 0.1 GO:0006449 regulation of translational termination(GO:0006449)
0.0 0.2 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.0 0.2 GO:1901957 regulation of cutin biosynthetic process(GO:1901957)
0.0 0.2 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.0 0.2 GO:0031222 arabinan catabolic process(GO:0031222)
0.0 0.1 GO:0010353 response to trehalose(GO:0010353)
0.0 0.1 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.0 0.1 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.9 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.1 GO:0043982 histone H4-K8 acetylation(GO:0043982)
0.0 0.5 GO:0010229 inflorescence development(GO:0010229)
0.0 0.1 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.1 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.0 0.4 GO:2000032 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.0 0.1 GO:0015854 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.0 0.1 GO:0009228 thiamine biosynthetic process(GO:0009228) thiamine-containing compound biosynthetic process(GO:0042724)
0.0 0.1 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.0 0.2 GO:0010424 DNA methylation on cytosine within a CG sequence(GO:0010424)
0.0 0.9 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.2 GO:0022610 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.0 0.2 GO:0045739 positive regulation of DNA repair(GO:0045739)
0.0 1.1 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788) negative regulation of response to alcohol(GO:1901420)
0.0 0.1 GO:0009769 photosynthesis, light harvesting in photosystem II(GO:0009769)
0.0 0.6 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.1 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.0 0.3 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.2 GO:0060359 response to ammonium ion(GO:0060359)
0.0 0.6 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.3 GO:0010161 red light signaling pathway(GO:0010161)
0.0 0.1 GO:0043406 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.0 0.3 GO:0010052 guard cell differentiation(GO:0010052)
0.0 0.4 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.2 GO:0080086 stamen filament development(GO:0080086)
0.0 0.2 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.2 GO:0018202 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.2 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.0 0.2 GO:0009827 plant-type cell wall modification(GO:0009827)
0.0 0.3 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.0 0.5 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.4 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.2 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.1 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.0 0.7 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.0 0.1 GO:0035434 copper ion transmembrane transport(GO:0035434)
0.0 0.4 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.0 0.5 GO:0030050 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.2 GO:0048465 petal development(GO:0048441) corolla development(GO:0048465)
0.0 0.2 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.6 GO:0006661 phosphatidylinositol biosynthetic process(GO:0006661)
0.0 0.1 GO:0019401 alditol biosynthetic process(GO:0019401)
0.0 0.1 GO:0010226 response to lithium ion(GO:0010226)
0.0 0.2 GO:0006560 proline metabolic process(GO:0006560)
0.0 0.1 GO:0045117 thiamine pyrophosphate transport(GO:0030974) vitamin transmembrane transport(GO:0035461) azole transport(GO:0045117)
0.0 0.1 GO:0046208 spermine catabolic process(GO:0046208)
0.0 0.3 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.0 0.1 GO:0090065 regulation of production of siRNA involved in RNA interference(GO:0090065)
0.0 0.2 GO:0006384 transcription initiation from RNA polymerase III promoter(GO:0006384)
0.0 0.2 GO:0048766 root hair initiation(GO:0048766)
0.0 0.1 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.0 0.1 GO:0099636 cytoplasmic streaming(GO:0099636)
0.0 0.4 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.1 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.4 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.2 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.0 0.1 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.2 GO:0080027 response to herbivore(GO:0080027)
0.0 0.1 GO:0019323 pentose catabolic process(GO:0019323)
0.0 0.0 GO:0044259 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.0 0.6 GO:0009690 cytokinin metabolic process(GO:0009690)
0.0 0.0 GO:0009915 phloem sucrose loading(GO:0009915)
0.0 0.0 GO:0006336 DNA replication-independent nucleosome assembly(GO:0006336)
0.0 0.1 GO:0034059 response to anoxia(GO:0034059)
0.0 0.1 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.0 0.1 GO:0043486 histone exchange(GO:0043486)
0.0 0.4 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.8 GO:0009631 cold acclimation(GO:0009631)
0.0 0.2 GO:0010274 hydrotropism(GO:0010274)
0.0 0.1 GO:0046084 adenine metabolic process(GO:0046083) adenine biosynthetic process(GO:0046084)
0.0 0.1 GO:0051452 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.0 0.2 GO:0015743 malate transport(GO:0015743)
0.0 0.2 GO:0030488 tRNA methylation(GO:0030488)
0.0 0.3 GO:0030148 sphingolipid biosynthetic process(GO:0030148)
0.0 0.1 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.1 GO:0008216 spermidine metabolic process(GO:0008216)
0.0 0.2 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 0.1 GO:0009435 NAD biosynthetic process(GO:0009435)
0.0 0.4 GO:0006935 chemotaxis(GO:0006935) pollen tube guidance(GO:0010183) taxis(GO:0042330) positive chemotaxis(GO:0050918)
0.0 0.1 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.0 0.2 GO:0010152 pollen maturation(GO:0010152)
0.0 0.1 GO:0010230 alternative respiration(GO:0010230)
0.0 0.1 GO:1902533 positive regulation of intracellular signal transduction(GO:1902533)
0.0 0.0 GO:0010358 leaf shaping(GO:0010358)
0.0 0.2 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.4 GO:0000741 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 0.1 GO:0071479 cellular response to ionizing radiation(GO:0071479)
0.0 0.4 GO:0071804 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.0 0.1 GO:0051865 protein autoubiquitination(GO:0051865)
0.0 0.0 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.0 0.1 GO:0018401 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.1 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.3 GO:0009740 gibberellic acid mediated signaling pathway(GO:0009740)
0.0 0.2 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.0 0.2 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.2 GO:0001678 cellular glucose homeostasis(GO:0001678)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.2 GO:0043674 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.2 0.5 GO:0009514 glyoxysome(GO:0009514)
0.1 0.3 GO:0070382 exocytic vesicle(GO:0070382)
0.1 0.3 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.1 0.5 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.1 0.2 GO:0016328 lateral plasma membrane(GO:0016328)
0.1 0.4 GO:0030139 endocytic vesicle(GO:0030139)
0.1 0.3 GO:0000214 tRNA-intron endonuclease complex(GO:0000214)
0.1 0.2 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.1 0.3 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.0 0.2 GO:1990124 messenger ribonucleoprotein complex(GO:1990124)
0.0 0.5 GO:0030131 clathrin adaptor complex(GO:0030131)
0.0 0.1 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.0 0.2 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.0 0.1 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0 0.1 GO:0032301 MutSalpha complex(GO:0032301)
0.0 1.0 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.8 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.4 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.4 GO:0000795 synaptonemal complex(GO:0000795)
0.0 8.4 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.1 GO:0000811 GINS complex(GO:0000811)
0.0 0.1 GO:0030896 checkpoint clamp complex(GO:0030896)
0.0 0.3 GO:0098554 integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554)
0.0 0.1 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.3 GO:0000109 nucleotide-excision repair complex(GO:0000109)
0.0 0.1 GO:0031356 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.0 0.7 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.2 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.0 0.1 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.0 0.3 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.1 GO:0005765 lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852)
0.0 0.4 GO:0005669 transcription factor TFIID complex(GO:0005669)
0.0 0.2 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.0 0.2 GO:0000815 ESCRT III complex(GO:0000815)
0.0 0.1 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.2 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.0 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.0 0.1 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.0 0.1 GO:0070552 BRISC complex(GO:0070552)
0.0 0.2 GO:0005720 nuclear heterochromatin(GO:0005720)
0.0 0.1 GO:0044545 NSL complex(GO:0044545)
0.0 0.1 GO:0005663 DNA replication factor C complex(GO:0005663)
0.0 0.1 GO:1902562 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.7 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.1 0.6 GO:0000150 recombinase activity(GO:0000150)
0.1 0.4 GO:0051731 polynucleotide 5'-hydroxyl-kinase activity(GO:0051731)
0.1 0.3 GO:0008798 beta-aspartyl-peptidase activity(GO:0008798)
0.1 0.6 GO:0016675 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.1 0.4 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.6 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.1 0.5 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.1 0.4 GO:0004112 cyclic-nucleotide phosphodiesterase activity(GO:0004112) 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity(GO:0004113)
0.1 0.3 GO:0005460 UDP-glucose transmembrane transporter activity(GO:0005460)
0.1 0.3 GO:0000213 tRNA-intron endonuclease activity(GO:0000213)
0.1 0.3 GO:0032135 DNA insertion or deletion binding(GO:0032135)
0.1 0.5 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.1 0.2 GO:0043812 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.1 0.2 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.1 0.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.1 0.9 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 0.2 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.1 0.2 GO:0000309 nicotinamide-nucleotide adenylyltransferase activity(GO:0000309)
0.1 0.5 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.1 1.1 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.1 0.6 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.1 0.2 GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity(GO:0003864)
0.1 0.3 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.1 0.3 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.1 0.1 GO:0052736 beta-glucanase activity(GO:0052736)
0.1 0.4 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.6 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.9 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.2 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.8 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.2 GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103)
0.0 0.6 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 0.4 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.0 0.9 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.7 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.0 0.2 GO:0004165 dodecenoyl-CoA delta-isomerase activity(GO:0004165)
0.0 0.2 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.1 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.0 0.2 GO:0070034 telomerase RNA binding(GO:0070034)
0.0 0.3 GO:0010011 auxin binding(GO:0010011)
0.0 0.2 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.2 GO:0003862 3-isopropylmalate dehydrogenase activity(GO:0003862)
0.0 0.1 GO:0052744 phosphatidylinositol monophosphate phosphatase activity(GO:0052744)
0.0 0.3 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.0 0.3 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.2 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.0 0.2 GO:0015193 L-proline transmembrane transporter activity(GO:0015193)
0.0 0.1 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.0 0.1 GO:0019784 NEDD8-specific protease activity(GO:0019784)
0.0 0.3 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.3 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.1 GO:0004298 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.0 0.1 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.0 0.1 GO:0003838 sterol 24-C-methyltransferase activity(GO:0003838)
0.0 1.1 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.2 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.0 0.2 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.0 0.1 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.0 0.1 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.0 0.4 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.0 0.1 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.0 0.1 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.0 0.2 GO:0060229 phospholipase activator activity(GO:0016004) lipase activator activity(GO:0060229)
0.0 0.2 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.0 0.1 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.0 0.2 GO:0043995 histone acetyltransferase activity (H4-K5 specific)(GO:0043995)
0.0 0.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.2 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.1 GO:0004385 guanylate kinase activity(GO:0004385)
0.0 0.5 GO:0016844 strictosidine synthase activity(GO:0016844)
0.0 0.1 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.0 0.2 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.0 0.9 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.1 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.1 GO:0098748 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.0 0.2 GO:0010340 carboxyl-O-methyltransferase activity(GO:0010340)
0.0 0.1 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.0 0.1 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.0 1.2 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.1 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.0 0.9 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.2 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.0 0.4 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.4 GO:0035529 NADH pyrophosphatase activity(GO:0035529)
0.0 0.1 GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.0 0.1 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 0.1 GO:0008936 nicotinamidase activity(GO:0008936)
0.0 0.1 GO:0051669 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.0 0.2 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.1 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.0 0.2 GO:0017048 Rho GTPase binding(GO:0017048)
0.0 0.2 GO:0010428 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)
0.0 0.2 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.0 0.1 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 0.1 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.0 0.2 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.1 GO:0008169 C-methyltransferase activity(GO:0008169)
0.0 0.1 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.5 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.4 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.4 GO:0010333 terpene synthase activity(GO:0010333)
0.0 0.1 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.0 0.1 GO:1901474 thiamine pyrophosphate transporter activity(GO:0090422) azole transmembrane transporter activity(GO:1901474)
0.0 0.1 GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity(GO:0052658)
0.0 0.1 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.0 0.5 GO:0048029 monosaccharide binding(GO:0048029)
0.0 0.1 GO:0009041 uridylate kinase activity(GO:0009041)
0.0 0.1 GO:0000062 fatty-acyl-CoA binding(GO:0000062)
0.0 0.4 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.4 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 0.2 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.5 GO:0005179 hormone activity(GO:0005179)
0.0 1.1 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.1 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.0 0.1 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.3 GO:0016157 sucrose synthase activity(GO:0016157)
0.0 0.2 GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912)
0.0 0.1 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.0 0.2 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.1 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.0 GO:0010331 gibberellin binding(GO:0010331)
0.0 0.3 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.1 GO:0015175 neutral amino acid transmembrane transporter activity(GO:0015175)
0.0 0.3 GO:0102336 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.3 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 0.2 GO:0008515 sucrose transmembrane transporter activity(GO:0008515)
0.0 0.2 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.2 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.0 GO:0016906 sterol 3-beta-glucosyltransferase activity(GO:0016906)
0.0 0.1 GO:0009916 alternative oxidase activity(GO:0009916)
0.0 0.0 GO:0016882 cyclo-ligase activity(GO:0016882)
0.0 0.2 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.1 GO:0004001 adenosine kinase activity(GO:0004001)
0.0 0.4 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.0 0.1 GO:0034511 U3 snoRNA binding(GO:0034511)
0.0 0.1 GO:0015198 peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198)
0.0 0.1 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.0 0.4 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 0.1 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.2 GO:0017056 structural constituent of nuclear pore(GO:0017056)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 PID ARF 3PATHWAY Arf1 pathway
0.1 0.1 PID ECADHERIN NASCENT AJ PATHWAY E-cadherin signaling in the nascent adherens junction
0.1 0.5 PID CXCR4 PATHWAY CXCR4-mediated signaling events
0.0 0.2 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.0 0.2 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.0 0.1 PID RAC1 PATHWAY RAC1 signaling pathway
0.0 0.1 PID ATR PATHWAY ATR signaling pathway
0.0 0.1 PID HES HEY PATHWAY Notch-mediated HES/HEY network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.1 0.2 REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC
0.1 1.2 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.1 0.2 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.0 0.2 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides
0.0 0.2 REACTOME MITOTIC G2 G2 M PHASES Genes involved in Mitotic G2-G2/M phases
0.0 0.1 REACTOME PI METABOLISM Genes involved in PI Metabolism
0.0 0.1 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.0 0.1 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 0.2 REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION Genes involved in Transcriptional Regulation of White Adipocyte Differentiation
0.0 0.3 REACTOME EXTENSION OF TELOMERES Genes involved in Extension of Telomeres
0.0 0.1 REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX Genes involved in CDC6 association with the ORC:origin complex
0.0 0.0 REACTOME FORMATION OF INCISION COMPLEX IN GG NER Genes involved in Formation of incision complex in GG-NER