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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G28140

Z-value: 0.16

Transcription factors associated with AT4G28140

Gene Symbol Gene ID Gene Info
AT4G28140
AT4G28140 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT4G28140arTal_v1_Chr4_-_13975919_13975919-0.582.8e-02Click!

Activity profile of AT4G28140 motif

Sorted Z-values of AT4G28140 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr1_-_28302728_28302728 0.29 AT1G75410.3
AT1G75410.1
BLH3
BEL1-like homeodomain 3
arTal_v1_Chr1_-_28302571_28302571 0.25 AT1G75410.2
BLH3
BEL1-like homeodomain 3
arTal_v1_Chr4_+_16310768_16310815 0.21 AT4G34050.1
AT4G34050.2
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr4_+_16310409_16310409 0.20 AT4G34050.3
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G28140

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.0 0.5 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)