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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G28500
Z-value: 0.55
Transcription factors associated with AT4G28500
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G28500
|
AT4G28500 | NAC domain containing protein 73 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC073 | arTal_v1_Chr4_+_14082660_14082660 | -0.34 | 2.3e-01 | Click! |
Activity profile of AT4G28500 motif
Sorted Z-values of AT4G28500 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_27940309_27940369 | 0.68 |
AT1G74310.1
AT1G74310.2 |
HSP101
|
heat shock protein 101 |
| arTal_v1_Chr3_+_18941925_18941925 | 0.56 |
AT3G50980.1
|
XERO1
|
dehydrin xero 1 |
| arTal_v1_Chr2_-_19512728_19512728 | 0.51 |
AT2G47560.1
|
AT2G47560
|
RING/U-box superfamily protein |
| arTal_v1_Chr1_+_10371675_10371675 | 0.47 |
AT1G29660.1
|
AT1G29660
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
| arTal_v1_Chr5_+_25721733_25721733 | 0.47 |
AT5G64310.1
|
AGP1
|
arabinogalactan protein 1 |
| arTal_v1_Chr5_+_18905258_18905272 | 0.47 |
AT5G46590.1
AT5G46590.2 |
NAC096
|
NAC domain containing protein 96 |
| arTal_v1_Chr3_-_3003454_3003454 | 0.43 |
AT3G09780.1
|
CCR1
|
CRINKLY4 related 1 |
| arTal_v1_Chr1_-_20015038_20015038 | 0.43 |
AT1G53625.1
|
AT1G53625
|
hypothetical protein |
| arTal_v1_Chr1_-_6038692_6038698 | 0.42 |
AT1G17560.2
AT1G17560.1 |
HLL
|
Ribosomal protein L14p/L23e family protein |
| arTal_v1_Chr5_-_21207697_21207716 | 0.42 |
AT5G52220.1
AT5G52220.2 |
AT5G52220
|
chromosome transmission fidelity-like protein |
| arTal_v1_Chr4_+_12660687_12660687 | 0.41 |
AT4G24510.1
|
CER2
|
HXXXD-type acyl-transferase family protein |
| arTal_v1_Chr3_+_10505711_10505711 | 0.41 |
AT3G28180.1
|
CSLC04
|
Cellulose-synthase-like C4 |
| arTal_v1_Chr4_-_15275404_15275404 | 0.40 |
AT4G31500.1
|
CYP83B1
|
cytochrome P450, family 83, subfamily B, polypeptide 1 |
| arTal_v1_Chr5_-_26970668_26970668 | 0.37 |
AT5G67640.1
|
AT5G67640
|
hypothetical protein |
| arTal_v1_Chr4_-_717579_717603 | 0.37 |
AT4G01680.3
AT4G01680.1 |
MYB55
|
myb domain protein 55 |
| arTal_v1_Chr3_+_4371441_4371441 | 0.36 |
AT3G13432.1
|
AT3G13432
|
transmembrane protein |
| arTal_v1_Chr4_+_7038437_7038489 | 0.36 |
AT4G11655.1
AT4G11655.2 |
AT4G11655
|
Uncharacterized protein family (UPF0497) |
| arTal_v1_Chr2_-_16346769_16346769 | 0.35 |
AT2G39180.1
|
CCR2
|
CRINKLY4 related 2 |
| arTal_v1_Chr4_-_17300367_17300367 | 0.33 |
AT4G36700.1
|
AT4G36700
|
RmlC-like cupins superfamily protein |
| arTal_v1_Chr3_-_8865239_8865239 | 0.32 |
AT3G24420.1
|
AT3G24420
|
alpha/beta-Hydrolases superfamily protein |
| arTal_v1_Chr5_-_6842946_6842946 | 0.31 |
AT5G20270.1
|
HHP1
|
heptahelical transmembrane protein1 |
| arTal_v1_Chr5_+_7718118_7718118 | 0.31 |
AT5G23020.1
|
IMS2
|
2-isopropylmalate synthase 2 |
| arTal_v1_Chr1_-_16657686_16657686 | 0.30 |
AT1G43910.1
|
AT1G43910
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| arTal_v1_Chr5_-_3517035_3517035 | 0.29 |
AT5G11070.1
|
AT5G11070
|
hypothetical protein |
| arTal_v1_Chr1_-_1358547_1358547 | 0.27 |
AT1G04820.1
|
TUA4
|
tubulin alpha-4 chain |
| arTal_v1_Chr4_-_717415_717415 | 0.27 |
AT4G01680.2
|
MYB55
|
myb domain protein 55 |
| arTal_v1_Chr1_-_30041952_30041952 | 0.27 |
AT1G79850.1
|
RPS17
|
ribosomal protein S17 |
| arTal_v1_Chr5_-_15201168_15201197 | 0.23 |
AT5G38100.4
AT5G38100.1 AT5G38100.2 |
AT5G38100
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| arTal_v1_Chr3_-_9268852_9268972 | 0.23 |
AT3G25510.2
AT3G25510.1 |
AT3G25510
|
disease resistance protein (TIR-NBS-LRR class) family protein |
| arTal_v1_Chr4_-_11185844_11185844 | 0.22 |
AT4G20900.2
AT4G20900.1 |
MS5
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
| arTal_v1_Chr3_+_677240_677240 | 0.22 |
AT3G03000.1
|
AT3G03000
|
EF hand calcium-binding protein family |
| arTal_v1_Chr3_+_1982659_1982659 | 0.21 |
AT3G06460.1
|
AT3G06460
|
GNS1/SUR4 membrane protein family |
| arTal_v1_Chr3_-_7141353_7141353 | 0.21 |
AT3G20470.1
|
GRP5
|
glycine-rich protein 5 |
| arTal_v1_Chr1_-_28407182_28407182 | 0.21 |
AT1G75640.1
|
AT1G75640
|
Leucine-rich receptor-like protein kinase family protein |
| arTal_v1_Chr1_-_29084285_29084285 | 0.21 |
AT1G77390.1
|
CYCA1%3B2
|
CYCLIN A1;2 |
| arTal_v1_Chr3_+_23159656_23159776 | 0.21 |
AT3G62620.4
AT3G62620.1 AT3G62620.5 AT3G62620.6 AT3G62620.9 AT3G62620.2 AT3G62620.7 AT3G62620.8 AT3G62620.3 |
AT3G62620
|
sucrose-phosphatase-like protein |
| arTal_v1_Chr1_+_23131928_23131928 | 0.20 |
AT1G62500.1
|
AT1G62500
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| arTal_v1_Chr1_-_26675990_26676042 | 0.20 |
AT1G70740.2
AT1G70740.1 |
AT1G70740
|
Protein kinase superfamily protein |
| arTal_v1_Chr5_+_25236945_25236963 | 0.19 |
AT5G62880.2
AT5G62880.1 |
RAC10
|
RAC-like 10 |
| arTal_v1_Chr5_-_15200868_15200868 | 0.19 |
AT5G38100.3
|
AT5G38100
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| arTal_v1_Chr5_-_8867637_8867724 | 0.19 |
AT5G25470.1
AT5G25470.3 AT5G25470.2 |
AT5G25470
|
AP2/B3-like transcriptional factor family protein |
| arTal_v1_Chr4_-_14257965_14257965 | 0.19 |
AT4G28890.1
|
AT4G28890
|
RING/U-box superfamily protein |
| arTal_v1_Chr4_+_15440971_15440971 | 0.18 |
AT4G31910.1
|
BAT1
|
HXXXD-type acyl-transferase family protein |
| arTal_v1_Chr2_-_8045008_8045033 | 0.18 |
AT2G18540.1
AT2G18540.2 |
AT2G18540
|
RmlC-like cupins superfamily protein |
| arTal_v1_Chr2_-_7727404_7727503 | 0.18 |
AT2G17780.2
AT2G17780.4 AT2G17780.5 AT2G17780.8 AT2G17780.10 AT2G17780.9 AT2G17780.1 AT2G17780.6 AT2G17780.3 AT2G17780.7 |
MCA2
|
PLAC8 family protein |
| arTal_v1_Chr4_-_8278810_8278908 | 0.18 |
AT4G14368.2
AT4G14368.1 AT4G14368.4 AT4G14368.3 |
AT4G14368
|
Regulator of chromosome condensation (RCC1) family protein |
| arTal_v1_Chr1_+_3187442_3187442 | 0.18 |
AT1G09812.1
|
AT1G09812
|
multidrug resistance protein |
| arTal_v1_Chr4_+_14876905_14876905 | 0.18 |
AT4G30420.2
|
UMAMIT34
|
nodulin MtN21 /EamA-like transporter family protein |
| arTal_v1_Chr5_+_8752684_8752684 | 0.17 |
AT5G25260.1
|
AT5G25260
|
SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| arTal_v1_Chr3_+_21738160_21738206 | 0.17 |
AT3G58780.4
AT3G58780.1 AT3G58780.3 |
SHP1
|
K-box region and MADS-box transcription factor family protein |
| arTal_v1_Chr1_-_1448448_1448463 | 0.17 |
AT1G05040.2
AT1G05040.1 |
AT1G05040
|
UBA-like domain protein |
| arTal_v1_Chr2_-_12291092_12291092 | 0.17 |
AT2G28650.1
|
EXO70H8
|
exocyst subunit exo70 family protein H8 |
| arTal_v1_Chr5_+_22670186_22670186 | 0.17 |
AT5G55980.1
|
AT5G55980
|
serine-rich protein-like protein |
| arTal_v1_Chr1_-_8023516_8023516 | 0.17 |
AT1G22670.1
|
AT1G22670
|
Protease-associated (PA) RING/U-box zinc finger family protein |
| arTal_v1_Chr5_+_1592013_1592130 | 0.17 |
AT5G05380.2
AT5G05380.3 AT5G05380.4 AT5G05380.1 |
PRA1.B3
|
prenylated RAB acceptor 1.B3 |
| arTal_v1_Chr1_-_30027277_30027391 | 0.17 |
AT1G79820.2
AT1G79820.1 AT1G79820.4 |
SGB1
|
Major facilitator superfamily protein |
| arTal_v1_Chr1_-_8424088_8424088 | 0.17 |
AT1G23830.1
|
AT1G23830
|
transmembrane protein |
| arTal_v1_Chr3_+_18929526_18929526 | 0.17 |
AT3G50930.1
|
BCS1
|
cytochrome BC1 synthesi |
| arTal_v1_Chr5_-_3709403_3709403 | 0.16 |
AT5G11550.1
|
AT5G11550
|
ARM repeat superfamily protein |
| arTal_v1_Chr4_-_16144024_16144024 | 0.16 |
AT4G33590.1
|
AT4G33590
|
transmembrane protein |
| arTal_v1_Chr4_+_5712328_5712328 | 0.16 |
AT4G08910.1
|
AT4G08910
|
homeobox protein |
| arTal_v1_Chr5_+_8323895_8323895 | 0.16 |
AT5G24380.1
|
YSL2
|
YELLOW STRIPE like 2 |
| arTal_v1_Chr3_-_16359983_16359983 | 0.16 |
AT3G44810.1
|
AT3G44810
|
F-box family protein |
| arTal_v1_Chr1_-_63811_63811 | 0.16 |
AT1G01130.1
|
AT1G01130
|
CBL-interacting Serine/Threonine-kinase |
| arTal_v1_Chr5_+_24396981_24396981 | 0.16 |
AT5G60690.1
|
REV
|
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| arTal_v1_Chr1_-_19575866_19575866 | 0.16 |
AT1G52560.2
AT1G52560.1 |
AT1G52560
|
HSP20-like chaperones superfamily protein |
| arTal_v1_Chr2_+_17012176_17012176 | 0.15 |
AT2G40765.1
|
AT2G40765
|
transmembrane protein |
| arTal_v1_Chr1_+_10178902_10178902 | 0.15 |
AT1G29140.1
|
AT1G29140
|
Pollen Ole e 1 allergen and extensin family protein |
| arTal_v1_Chr3_+_9756007_9756007 | 0.15 |
AT3G26570.1
AT3G26570.2 |
PHT2%3B1
|
phosphate transporter 2;1 |
| arTal_v1_Chr4_+_16829326_16829326 | 0.15 |
AT4G35390.1
|
AGF1
|
AT-hook protein of GA feedback 1 |
| arTal_v1_Chr1_-_30027634_30027634 | 0.15 |
AT1G79820.3
|
SGB1
|
Major facilitator superfamily protein |
| arTal_v1_Chr5_-_23691053_23691053 | 0.14 |
AT5G58610.5
AT5G58610.6 AT5G58610.1 AT5G58610.7 AT5G58610.9 AT5G58610.11 |
AT5G58610
|
PHD finger transcription factor |
| arTal_v1_Chr1_-_19458069_19458069 | 0.14 |
AT1G52240.1
|
ROPGEF11
|
rop guanine nucleotide exchange factor-like protein |
| arTal_v1_Chr2_+_15382661_15382661 | 0.14 |
AT2G36695.1
|
AT2G36695
|
hypothetical protein |
| arTal_v1_Chr1_+_6996354_6996354 | 0.14 |
AT1G20180.2
|
AT1G20180
|
transmembrane protein (DUF677) |
| arTal_v1_Chr4_+_11139609_11139609 | 0.14 |
AT4G20800.1
|
AT4G20800
|
FAD-binding Berberine family protein |
| arTal_v1_Chr3_-_2225254_2225254 | 0.14 |
AT3G07030.1
AT3G07030.5 |
AT3G07030
|
Alba DNA/RNA-binding protein |
| arTal_v1_Chr5_+_21138703_21138703 | 0.14 |
AT5G52050.1
|
AT5G52050
|
MATE efflux family protein |
| arTal_v1_Chr2_-_19266446_19266456 | 0.14 |
AT2G46880.1
AT2G46880.2 |
PAP14
|
purple acid phosphatase 14 |
| arTal_v1_Chr1_+_22835078_22835078 | 0.14 |
AT1G61820.1
|
BGLU46
|
beta glucosidase 46 |
| arTal_v1_Chr5_+_1785845_1785845 | 0.14 |
AT5G05940.2
AT5G05940.1 |
ROPGEF5
|
ROP guanine nucleotide exchange factor 5 |
| arTal_v1_Chr1_-_498539_498539 | 0.14 |
AT1G02450.1
|
NIMIN1
|
NIM1-interacting 1 |
| arTal_v1_Chr5_-_18032293_18032293 | 0.14 |
AT5G44690.1
|
AT5G44690
|
RING finger PFF0165c-like protein |
| arTal_v1_Chr2_+_18283789_18283789 | 0.14 |
AT2G44220.1
|
AT2G44220
|
NEP-interacting protein (DUF239) |
| arTal_v1_Chr3_+_16305322_16305322 | 0.14 |
AT3G44760.1
|
AT3G44760
|
transmembrane protein |
| arTal_v1_Chr1_-_4480325_4480327 | 0.13 |
AT1G13140.1
AT1G13140.2 |
CYP86C3
|
cytochrome P450, family 86, subfamily C, polypeptide 3 |
| arTal_v1_Chr1_-_2551544_2551544 | 0.13 |
AT1G08135.1
|
CHX6B
|
cation/H+ exchanger 6B |
| arTal_v1_Chr5_-_17941646_17941646 | 0.13 |
AT5G44540.1
|
AT5G44540
|
Tapetum specific protein TAP35/TAP44 |
| arTal_v1_Chr2_+_11247160_11247160 | 0.13 |
AT2G26440.1
|
AT2G26440
|
Plant invertase/pectin methylesterase inhibitor superfamily |
| arTal_v1_Chr3_+_21738460_21738460 | 0.13 |
AT3G58780.2
|
SHP1
|
K-box region and MADS-box transcription factor family protein |
| arTal_v1_Chr5_-_23691394_23691394 | 0.13 |
AT5G58610.4
AT5G58610.2 AT5G58610.3 AT5G58610.10 |
AT5G58610
|
PHD finger transcription factor |
| arTal_v1_Chr3_-_8025906_8025906 | 0.13 |
AT3G22700.1
|
AT3G22700
|
F-box and associated interaction domains-containing protein |
| arTal_v1_Chr2_+_10826735_10826735 | 0.13 |
AT2G25440.1
|
RLP20
|
receptor like protein 20 |
| arTal_v1_Chr2_+_14053404_14053404 | 0.13 |
AT2G33160.1
|
AT2G33160
|
glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| arTal_v1_Chr5_-_14863392_14863423 | 0.13 |
AT5G37470.1
AT5G37470.2 |
AT5G37470
|
hypothetical protein (DUF577) |
| arTal_v1_Chr3_+_21738883_21738883 | 0.13 |
AT3G58780.5
|
SHP1
|
K-box region and MADS-box transcription factor family protein |
| arTal_v1_Chr1_+_21022384_21022384 | 0.13 |
AT1G56160.1
|
MYB72
|
myb domain protein 72 |
| arTal_v1_Chr1_-_16412736_16412736 | 0.13 |
AT1G43580.1
|
AT1G43580
|
Sphingomyelin synthetase family protein |
| arTal_v1_Chr1_-_29011247_29011247 | 0.13 |
AT1G77210.3
AT1G77210.2 |
STP14
|
sugar transporter 14 |
| arTal_v1_Chr4_-_13214509_13214509 | 0.13 |
AT4G26055.1
|
AT4G26055
|
transmembrane protein |
| arTal_v1_Chr1_-_25686195_25686195 | 0.13 |
AT1G68480.1
|
JAG
|
C2H2 and C2HC zinc fingers superfamily protein |
| arTal_v1_Chr1_-_25685360_25685360 | 0.13 |
AT1G68480.3
|
JAG
|
C2H2 and C2HC zinc fingers superfamily protein |
| arTal_v1_Chr3_-_23178294_23178294 | 0.13 |
AT3G62670.1
|
RR20
|
two-component response regulator |
| arTal_v1_Chr1_-_12984640_12984740 | 0.13 |
AT1G35350.2
AT1G35350.1 |
AT1G35350
|
EXS (ERD1/XPR1/SYG1) family protein |
| arTal_v1_Chr1_-_30025658_30025658 | 0.13 |
AT1G79820.5
|
SGB1
|
Major facilitator superfamily protein |
| arTal_v1_Chr2_-_8498778_8498807 | 0.12 |
AT2G19660.1
AT2G19660.2 |
AT2G19660
|
Cysteine/Histidine-rich C1 domain family protein |
| arTal_v1_Chr4_-_12914039_12914039 | 0.12 |
AT4G25180.1
|
AT4G25180
|
RNA polymerase III RPC4 |
| arTal_v1_Chr3_+_10710405_10710534 | 0.12 |
AT3G28570.2
AT3G28570.1 |
AT3G28570
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| arTal_v1_Chr1_+_6996176_6996176 | 0.12 |
AT1G20180.1
|
AT1G20180
|
transmembrane protein (DUF677) |
| arTal_v1_Chr5_-_8142432_8142432 | 0.12 |
AT5G24080.1
AT5G24080.3 AT5G24080.2 |
AT5G24080
|
Protein kinase superfamily protein |
| arTal_v1_Chr3_-_16999992_16999992 | 0.12 |
AT3G46260.1
|
AT3G46260
|
kinase-like protein |
| arTal_v1_Chr5_-_25381317_25381317 | 0.12 |
AT5G63350.1
|
AT5G63350
|
von willebrand factor A domain protein |
| arTal_v1_Chr1_-_29012096_29012096 | 0.12 |
AT1G77210.1
|
STP14
|
sugar transporter 14 |
| arTal_v1_Chr1_+_9241036_9241036 | 0.12 |
AT1G26730.1
AT1G26730.2 |
AT1G26730
|
EXS (ERD1/XPR1/SYG1) family protein |
| arTal_v1_Chr5_+_6776073_6776275 | 0.12 |
AT5G20060.1
AT5G20060.2 AT5G20060.4 AT5G20060.3 |
AT5G20060
|
alpha/beta-Hydrolases superfamily protein |
| arTal_v1_Chr2_+_450379_450379 | 0.12 |
AT2G01960.1
|
TET14
|
tetraspanin14 |
| arTal_v1_Chr4_-_10223028_10223076 | 0.12 |
AT4G18540.2
AT4G18540.1 |
AT4G18540
|
transmembrane protein |
| arTal_v1_Chr1_-_25007647_25007647 | 0.12 |
AT1G67000.1
|
AT1G67000
|
Protein kinase superfamily protein |
| arTal_v1_Chr5_+_24363591_24363591 | 0.12 |
AT5G60610.1
|
AT5G60610
|
F-box/RNI-like superfamily protein |
| arTal_v1_Chr2_-_8955831_8955831 | 0.12 |
AT2G20800.1
|
NDB4
|
NAD(P)H dehydrogenase B4 |
| arTal_v1_Chr5_+_24363933_24363933 | 0.12 |
AT5G60610.2
|
AT5G60610
|
F-box/RNI-like superfamily protein |
| arTal_v1_Chr2_+_14105896_14105896 | 0.12 |
AT2G33280.2
AT2G33280.1 |
AT2G33280
|
Major facilitator superfamily protein |
| arTal_v1_Chr5_-_16930532_16930532 | 0.12 |
AT5G42340.1
|
PUB15
|
Plant U-Box 15 |
| arTal_v1_Chr5_+_7328870_7328870 | 0.12 |
AT5G22100.1
|
AT5G22100
|
RNA cyclase family protein |
| arTal_v1_Chr2_+_9290705_9290705 | 0.12 |
AT2G21780.1
|
AT2G21780
|
hypothetical protein |
| arTal_v1_Chr3_-_3534958_3534994 | 0.12 |
AT3G11280.2
AT3G11280.1 |
AT3G11280
|
Duplicated homeodomain-like superfamily protein |
| arTal_v1_Chr5_-_23691216_23691216 | 0.12 |
AT5G58610.8
|
AT5G58610
|
PHD finger transcription factor |
| arTal_v1_Chr4_-_3816028_3816028 | 0.12 |
AT4G06648.1
|
AT4G06648
|
|
| arTal_v1_Chr2_-_14122190_14122190 | 0.12 |
AT2G33320.1
|
AT2G33320
|
Calcium-dependent lipid-binding (CaLB domain) family protein |
| arTal_v1_Chr1_-_25685868_25685868 | 0.11 |
AT1G68480.2
|
JAG
|
C2H2 and C2HC zinc fingers superfamily protein |
| arTal_v1_Chr1_-_28965367_28965367 | 0.11 |
AT1G77095.1
|
AT1G77095
|
|
| arTal_v1_Chr4_-_15341955_15342081 | 0.11 |
AT4G31680.2
AT4G31680.1 |
AT4G31680
|
Transcriptional factor B3 family protein |
| arTal_v1_Chr3_-_16726116_16726116 | 0.11 |
AT3G45570.1
|
AT3G45570
|
RING/U-box protein with C6HC-type zinc finger domain-containing protein |
| arTal_v1_Chr1_-_5354314_5354314 | 0.11 |
AT1G15560.1
|
AT1G15560
|
|
| arTal_v1_Chr3_+_8603212_8603212 | 0.11 |
AT3G23820.1
|
GAE6
|
UDP-D-glucuronate 4-epimerase 6 |
| arTal_v1_Chr1_-_28485951_28486077 | 0.11 |
AT1G75860.1
AT1G75860.2 |
AT1G75860
|
DNA ligase |
| arTal_v1_Chr2_-_17882636_17882636 | 0.11 |
AT2G43000.1
AT2G43000.2 |
NAC042
|
NAC domain containing protein 42 |
| arTal_v1_Chr4_+_17592996_17592996 | 0.11 |
AT4G37420.1
|
AT4G37420
|
glycosyltransferase family protein (DUF23) |
| arTal_v1_Chr1_+_29181110_29181110 | 0.11 |
AT1G77650.1
|
AT1G77650
|
F-box associated ubiquitination effector family protein |
| arTal_v1_Chr1_+_677360_677360 | 0.11 |
AT1G02980.1
|
CUL2
|
cullin 2 |
| arTal_v1_Chr5_-_15417253_15417253 | 0.11 |
AT5G38500.1
|
AT5G38500
|
B3 domain protein (DUF313) |
| arTal_v1_Chr1_+_26996805_26996805 | 0.11 |
AT1G71790.1
|
CPB
|
Subunits of heterodimeric actin filament capping protein Capz superfamily |
| arTal_v1_Chr3_+_23159944_23159944 | 0.11 |
AT3G62620.10
|
AT3G62620
|
sucrose-phosphatase-like protein |
| arTal_v1_Chr5_-_24189765_24189765 | 0.11 |
AT5G60060.1
|
AT5G60060
|
F-box SKIP23-like protein (DUF295) |
| arTal_v1_Chr4_-_5407320_5407320 | 0.11 |
AT4G08500.1
|
MEKK1
|
MAPK/ERK kinase kinase 1 |
| arTal_v1_Chr1_-_23055672_23055672 | 0.10 |
AT1G62340.1
|
ALE1
|
PA-domain containing subtilase family protein |
| arTal_v1_Chr4_+_7067035_7067035 | 0.10 |
AT4G11730.1
|
AT4G11730
|
Cation transporter/ E1-E2 ATPase family protein |
| arTal_v1_Chr2_-_18847835_18847835 | 0.10 |
AT2G45760.1
|
BAP2
|
BON association protein 2 |
| arTal_v1_Chr2_+_14106118_14106118 | 0.10 |
AT2G33280.3
|
AT2G33280
|
Major facilitator superfamily protein |
| arTal_v1_Chr4_+_14768784_14768784 | 0.10 |
AT4G30180.1
|
AT4G30180
|
hypothetical protein |
| arTal_v1_Chr5_-_10268620_10268620 | 0.10 |
AT5G28285.1
|
AT5G28285
|
|
| arTal_v1_Chr3_-_7501888_7501888 | 0.10 |
AT3G21320.1
|
AT3G21320
|
EARLY FLOWERING protein |
| arTal_v1_Chr1_-_21713103_21713103 | 0.10 |
AT1G58430.1
|
RXF26
|
GDSL-like Lipase/Acylhydrolase family protein |
| arTal_v1_Chr1_+_9476197_9476197 | 0.10 |
AT1G27285.1
|
AT1G27285
|
|
| arTal_v1_Chr2_+_15906555_15906645 | 0.10 |
AT2G38010.2
AT2G38010.3 |
AT2G38010
|
Neutral/alkaline non-lysosomal ceramidase |
| arTal_v1_Chr1_-_4626064_4626166 | 0.10 |
AT1G13490.1
AT1G13490.2 |
AT1G13490
|
hypothetical protein (DUF1262) |
| arTal_v1_Chr1_+_677869_677869 | 0.10 |
AT1G02980.2
|
CUL2
|
cullin 2 |
| arTal_v1_Chr2_-_12355480_12355570 | 0.10 |
AT2G28790.1
AT2G28790.2 |
AT2G28790
|
Pathogenesis-related thaumatin superfamily protein |
| arTal_v1_Chr2_-_10264065_10264065 | 0.10 |
AT2G24140.3
AT2G24140.1 AT2G24140.4 AT2G24140.2 |
AT2G24140
|
myosin-J heavy chain-like protein (Protein of unknown function, DUF593) |
| arTal_v1_Chr2_-_13995749_13995905 | 0.10 |
AT2G32970.1
AT2G32970.4 AT2G32970.2 |
AT2G32970
|
G1/S-specific cyclin-E protein |
| arTal_v1_Chr5_-_22847615_22847615 | 0.10 |
AT5G56400.1
|
AT5G56400
|
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein |
| arTal_v1_Chr4_+_8713689_8713689 | 0.10 |
AT4G15260.1
|
AT4G15260
|
UDP-Glycosyltransferase superfamily protein |
| arTal_v1_Chr1_-_10042693_10042693 | 0.10 |
AT1G28570.3
|
AT1G28570
|
SGNH hydrolase-type esterase superfamily protein |
| arTal_v1_Chr1_-_17035105_17035105 | 0.10 |
AT1G45063.1
AT1G45063.2 |
AT1G45063
|
copper ion binding / electron carrier protein |
| arTal_v1_Chr3_-_15717829_15717829 | 0.09 |
AT3G43863.1
|
AT3G43863
|
|
| arTal_v1_Chr2_+_17713196_17713196 | 0.09 |
AT2G42550.1
|
AT2G42550
|
Protein kinase superfamily protein |
| arTal_v1_Chr5_-_2847415_2847415 | 0.09 |
AT5G08730.1
|
ARI16
|
IBR domain-containing protein |
| arTal_v1_Chr2_-_19294375_19294375 | 0.09 |
AT2G46960.2
AT2G46960.1 |
CYP709B1
|
cytochrome P450, family 709, subfamily B, polypeptide 1 |
| arTal_v1_Chr5_+_9974411_9974411 | 0.09 |
AT5G27940.1
|
WPP3
|
WPP domain protein 3 |
| arTal_v1_Chr5_+_19883929_19883929 | 0.09 |
AT5G49050.1
|
AT5G49050
|
universal stress A-like protein |
| arTal_v1_Chr3_-_21564067_21564067 | 0.09 |
AT3G58210.1
|
AT3G58210
|
TRAF-like family protein |
| arTal_v1_Chr4_+_6473547_6473547 | 0.09 |
AT4G10465.1
|
AT4G10465
|
Heavy metal transport/detoxification superfamily protein |
| arTal_v1_Chr5_-_22326418_22326418 | 0.09 |
AT5G55020.1
|
MYB120
|
myb domain protein 120 |
| arTal_v1_Chr3_-_19782230_19782230 | 0.09 |
AT3G53350.7
|
RIP3
|
ROP interactive partner 4 |
| arTal_v1_Chr3_+_241739_241758 | 0.09 |
AT3G01650.1
AT3G01650.2 |
RGLG1
|
RING domain ligase1 |
| arTal_v1_Chr2_-_19138725_19138762 | 0.09 |
AT2G46610.2
AT2G46610.1 AT2G46610.3 |
RS31a
|
RNA-binding (RRM/RBD/RNP motifs) family protein |
| arTal_v1_Chr4_-_857020_857020 | 0.09 |
AT4G01970.1
|
STS
|
stachyose synthase |
| arTal_v1_Chr5_-_17873698_17873829 | 0.09 |
AT5G44360.1
AT5G44360.2 |
AT5G44360
|
FAD-binding Berberine family protein |
| arTal_v1_Chr1_+_23144385_23144385 | 0.09 |
AT1G62520.1
|
AT1G62520
|
sulfated surface-like glycoprotein |
| arTal_v1_Chr5_+_257306_257306 | 0.09 |
AT5G01690.1
|
CHX27
|
cation/H+ exchanger 27 |
| arTal_v1_Chr2_+_14288323_14288323 | 0.09 |
AT2G33775.1
|
RALFL19
|
ralf-like 19 |
| arTal_v1_Chr3_-_19781741_19781741 | 0.09 |
AT3G53350.3
|
RIP3
|
ROP interactive partner 4 |
| arTal_v1_Chr3_+_4889063_4889063 | 0.09 |
AT3G14560.1
|
AT3G14560
|
hypothetical protein |
| arTal_v1_Chr5_+_8096256_8096256 | 0.09 |
AT5G23970.1
|
AT5G23970
|
HXXXD-type acyl-transferase family protein |
| arTal_v1_Chr1_-_5486105_5486105 | 0.09 |
AT1G15960.1
|
NRAMP6
|
NRAMP metal ion transporter 6 |
| arTal_v1_Chr2_+_15906862_15906862 | 0.09 |
AT2G38010.1
|
AT2G38010
|
Neutral/alkaline non-lysosomal ceramidase |
| arTal_v1_Chr5_-_15413132_15413132 | 0.09 |
AT5G38490.1
|
AT5G38490
|
B3 domain protein (DUF313) |
| arTal_v1_Chr3_+_9278878_9278878 | 0.09 |
AT3G25550.1
|
AT3G25550
|
F-box family protein |
| arTal_v1_Chr4_-_857401_857401 | 0.09 |
AT4G01970.2
|
STS
|
stachyose synthase |
| arTal_v1_Chr1_+_23966909_23966909 | 0.09 |
AT1G64540.2
|
AT1G64540
|
F-box/FBD-like domains containing protein |
| arTal_v1_Chr3_+_23381604_23381684 | 0.09 |
AT3G63290.1
AT3G63290.2 |
AT3G63290
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| arTal_v1_Chr1_-_17885614_17885614 | 0.09 |
AT1G48405.1
|
AT1G48405
|
Kinase interacting (KIP1-like) family protein |
| arTal_v1_Chr4_+_6230822_6230822 | 0.09 |
AT4G09940.2
|
AT4G09940
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| arTal_v1_Chr5_-_18308303_18308303 | 0.09 |
AT5G45230.1
|
AT5G45230
|
Disease resistance protein (TIR-NBS-LRR class) family |
| arTal_v1_Chr3_+_7358840_7358840 | 0.09 |
AT3G20990.1
|
AT3G20990
|
|
| arTal_v1_Chr3_+_1928868_1928868 | 0.09 |
AT3G06360.1
|
AGP27
|
arabinogalactan protein 27 |
| arTal_v1_Chr2_-_12655457_12655457 | 0.09 |
AT2G29590.1
|
AT2G29590
|
Thioesterase superfamily protein |
| arTal_v1_Chr2_-_13995590_13995590 | 0.09 |
AT2G32970.3
|
AT2G32970
|
G1/S-specific cyclin-E protein |
| arTal_v1_Chr4_+_16904059_16904059 | 0.08 |
AT4G35630.1
|
PSAT
|
phosphoserine aminotransferase |
| arTal_v1_Chr4_+_6231786_6231786 | 0.08 |
AT4G09940.1
|
AT4G09940
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G28500
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0010501 | RNA secondary structure unwinding(GO:0010501) |
| 0.1 | 0.3 | GO:0071258 | cellular response to gravity(GO:0071258) |
| 0.1 | 0.4 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.1 | 0.2 | GO:0015812 | gamma-aminobutyric acid transport(GO:0015812) |
| 0.0 | 0.2 | GO:2001009 | regulation of plant-type cell wall cellulose biosynthetic process(GO:2001009) |
| 0.0 | 0.2 | GO:0070509 | calcium ion import(GO:0070509) |
| 0.0 | 0.1 | GO:1990532 | stress response to nickel ion(GO:1990532) |
| 0.0 | 0.2 | GO:0046622 | positive regulation of organ growth(GO:0046622) |
| 0.0 | 0.2 | GO:0051016 | barbed-end actin filament capping(GO:0051016) |
| 0.0 | 0.4 | GO:0080060 | integument development(GO:0080060) |
| 0.0 | 0.4 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.0 | 0.1 | GO:0019586 | uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586) |
| 0.0 | 0.3 | GO:0051365 | cellular response to potassium ion starvation(GO:0051365) |
| 0.0 | 0.2 | GO:0009855 | determination of bilateral symmetry(GO:0009855) |
| 0.0 | 0.4 | GO:0007064 | mitotic sister chromatid cohesion(GO:0007064) |
| 0.0 | 0.1 | GO:1902065 | response to L-glutamate(GO:1902065) |
| 0.0 | 0.1 | GO:0090059 | protoxylem development(GO:0090059) |
| 0.0 | 0.3 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
| 0.0 | 0.4 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.0 | 0.1 | GO:0019593 | hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594) |
| 0.0 | 0.6 | GO:0045727 | positive regulation of translation(GO:0045727) |
| 0.0 | 0.1 | GO:0015854 | adenine transport(GO:0015853) guanine transport(GO:0015854) |
| 0.0 | 0.3 | GO:0032544 | plastid translation(GO:0032544) |
| 0.0 | 0.1 | GO:0006370 | 7-methylguanosine mRNA capping(GO:0006370) |
| 0.0 | 0.1 | GO:0080148 | negative regulation of response to water deprivation(GO:0080148) |
| 0.0 | 0.1 | GO:0006561 | proline biosynthetic process(GO:0006561) |
| 0.0 | 0.1 | GO:0046513 | ceramide biosynthetic process(GO:0046513) |
| 0.0 | 0.5 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.0 | 0.1 | GO:0009405 | pathogenesis(GO:0009405) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0031390 | Ctf18 RFC-like complex(GO:0031390) |
| 0.0 | 0.3 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
| 0.0 | 0.1 | GO:0031314 | extrinsic component of mitochondrial inner membrane(GO:0031314) |
| 0.0 | 0.3 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.4 | GO:0005762 | mitochondrial large ribosomal subunit(GO:0005762) |
| 0.0 | 0.2 | GO:0009531 | secondary cell wall(GO:0009531) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.1 | 0.3 | GO:0003852 | 2-isopropylmalate synthase activity(GO:0003852) |
| 0.1 | 0.2 | GO:0015185 | L-alanine transmembrane transporter activity(GO:0015180) gamma-aminobutyric acid transmembrane transporter activity(GO:0015185) alanine transmembrane transporter activity(GO:0022858) |
| 0.1 | 0.3 | GO:0005354 | galactose transmembrane transporter activity(GO:0005354) |
| 0.0 | 0.2 | GO:0051980 | iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980) |
| 0.0 | 0.4 | GO:0070180 | large ribosomal subunit rRNA binding(GO:0070180) |
| 0.0 | 0.2 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 0.1 | GO:0047782 | coniferin beta-glucosidase activity(GO:0047782) |
| 0.0 | 0.1 | GO:0033188 | sphingomyelin synthase activity(GO:0033188) ceramide cholinephosphotransferase activity(GO:0047493) |
| 0.0 | 0.1 | GO:0004484 | mRNA guanylyltransferase activity(GO:0004484) polynucleotide 5'-phosphatase activity(GO:0004651) RNA guanylyltransferase activity(GO:0008192) |
| 0.0 | 0.1 | GO:0050378 | UDP-glucuronate 4-epimerase activity(GO:0050378) |
| 0.0 | 0.1 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 0.0 | 0.2 | GO:0015114 | phosphate ion transmembrane transporter activity(GO:0015114) |
| 0.0 | 0.3 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.0 | 0.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 0.0 | GO:0047498 | calcium-dependent phospholipase A2 activity(GO:0047498) |
| 0.0 | 0.2 | GO:0019903 | protein phosphatase binding(GO:0019903) |
| 0.0 | 0.5 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.0 | 0.3 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.2 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.2 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.0 | 0.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |