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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G36620

Z-value: 0.37

Transcription factors associated with AT4G36620

Gene Symbol Gene ID Gene Info
AT4G36620
AT4G36620 GATA transcription factor 19

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
GATA19arTal_v1_Chr4_-_17269999_172699990.535.3e-02Click!

Activity profile of AT4G36620 motif

Sorted Z-values of AT4G36620 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr3_-_82182_82182 0.92 AT3G01260.1
AT3G01260
Galactose mutarotase-like superfamily protein
arTal_v1_Chr3_-_2569700_2569700 0.65 AT3G08040.2
AT3G08040.1
FRD3
MATE efflux family protein
arTal_v1_Chr3_-_11269228_11269356 0.39 AT3G29360.2
AT3G29360.1
UGD2
UDP-glucose 6-dehydrogenase family protein
arTal_v1_Chr3_-_2607573_2607573 0.31 AT3G08580.1
AAC1
ADP/ATP carrier 1
arTal_v1_Chr3_+_3203988_3203988 0.31 AT3G10340.1
PAL4
phenylalanine ammonia-lyase 4
arTal_v1_Chr3_-_2607895_2607895 0.31 AT3G08580.2
AAC1
ADP/ATP carrier 1
arTal_v1_Chr5_+_4370692_4370692 0.29 AT5G13580.1
ABCG6
ABC-2 type transporter family protein
arTal_v1_Chr3_-_1756924_1756924 0.28 AT3G05880.1
RCI2A
Low temperature and salt responsive protein family
arTal_v1_Chr5_-_556623_556623 0.27 AT5G02500.1
HSC70-1
heat shock cognate protein 70-1
arTal_v1_Chr5_-_556442_556442 0.27 AT5G02500.2
HSC70-1
heat shock cognate protein 70-1
arTal_v1_Chr4_+_13444797_13444938 0.26 AT4G26650.1
AT4G26650.2
AT4G26650
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr5_+_1399395_1399395 0.26 AT5G04820.1
OFP13
ovate family protein 13
arTal_v1_Chr2_+_13328862_13328862 0.26 AT2G31270.1
CDT1A
CDT1-like protein A
arTal_v1_Chr1_+_27283628_27283628 0.26 AT1G72470.1
EXO70D1
exocyst subunit exo70 family protein D1
arTal_v1_Chr1_-_7830275_7830424 0.25 AT1G22180.1
AT1G22180.3
AT1G22180.2
AT1G22180.4
AT1G22180
Sec14p-like phosphatidylinositol transfer family protein
arTal_v1_Chr1_+_30187920_30187920 0.23 AT1G80290.1
AT1G80290
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr3_+_2455239_2455239 0.22 AT3G07680.1
p24beta2
emp24/gp25L/p24 family/GOLD family protein
arTal_v1_Chr1_-_1191458_1191458 0.22 AT1G04410.1
c-NAD-MDH1
Lactate/malate dehydrogenase family protein
arTal_v1_Chr5_+_24137225_24137225 0.22 AT5G59940.1
AT5G59940
Cysteine/Histidine-rich C1 domain family protein
arTal_v1_Chr3_+_22340859_22340891 0.22 AT3G60450.2
AT3G60450.1
AT3G60450
Phosphoglycerate mutase family protein
arTal_v1_Chr2_+_18408579_18408579 0.22 AT2G44600.1
AT2G44600
hypothetical protein
arTal_v1_Chr3_+_9154508_9154508 0.22 AT3G25140.1
QUA1
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr1_+_30188364_30188364 0.21 AT1G80290.2
AT1G80290
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr5_-_19304737_19304950 0.21 AT5G47620.3
AT5G47620.1
AT5G47620.4
AT5G47620.5
AT5G47620.2
AT5G47620
RNA-binding (RRM/RBD/RNP motifs) family protein
arTal_v1_Chr2_-_14568799_14568799 0.20 AT2G34585.1
AT2G34585
transmembrane protein
arTal_v1_Chr1_+_8219808_8219808 0.20 AT1G23190.1
PGM3
Phosphoglucomutase/phosphomannomutase family protein
arTal_v1_Chr5_-_24318241_24318241 0.20 AT5G60460.1
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein
arTal_v1_Chr1_+_8079287_8079287 0.20 AT1G22840.1
AT1G22840.2
CYTC-1
CYTOCHROME C-1
arTal_v1_Chr5_-_19388562_19388587 0.20 AT5G47880.2
AT5G47880.1
ERF1-1
eukaryotic release factor 1-1
arTal_v1_Chr2_+_18309022_18309022 0.20 AT2G44310.1
AT2G44310
Calcium-binding EF-hand family protein
arTal_v1_Chr3_-_20229214_20229214 0.19 AT3G54650.1
FBL17
RNI-like superfamily protein
arTal_v1_Chr2_-_14078744_14078772 0.19 AT2G33210.2
AT2G33210.1
HSP60-2
heat shock protein 60-2
arTal_v1_Chr5_-_24317935_24317935 0.19 AT5G60460.2
AT5G60460
Preprotein translocase Sec, Sec61-beta subunit protein
arTal_v1_Chr3_+_20344785_20344785 0.19 AT3G54920.1
PMR6
Pectin lyase-like superfamily protein
arTal_v1_Chr5_-_5030245_5030245 0.18 AT5G15490.1
UGD3
UDP-glucose 6-dehydrogenase family protein
arTal_v1_Chr5_+_15742543_15742543 0.18 AT5G39320.1
UDG4
UDP-glucose 6-dehydrogenase family protein
arTal_v1_Chr1_-_13031375_13031375 0.17 AT1G35430.1
AT1G35430
transmembrane protein
arTal_v1_Chr4_+_128581_128581 0.17 AT4G00300.1
AT4G00300
receptor-like kinase
arTal_v1_Chr5_-_2325419_2325535 0.17 AT5G07350.2
AT5G07350.1
Tudor1
TUDOR-SN protein 1
arTal_v1_Chr1_+_21042951_21042977 0.16 AT1G56220.4
AT1G56220.5
AT1G56220.3
AT1G56220
Dormancy/auxin associated family protein
arTal_v1_Chr1_+_21043348_21043348 0.16 AT1G56220.2
AT1G56220.1
AT1G56220
Dormancy/auxin associated family protein
arTal_v1_Chr2_+_7872201_7872201 0.16 AT2G18110.1
AT2G18110
Translation elongation factor EF1B/ribosomal protein S6 family protein
arTal_v1_Chr3_+_9182616_9182616 0.15 AT3G25220.1
FKBP15-1
FK506-binding protein 15 kD-1
arTal_v1_Chr5_-_5024750_5024750 0.14 AT5G15470.1
GAUT14
galacturonosyltransferase 14
arTal_v1_Chr3_+_1221422_1221422 0.14 AT3G04530.1
PPCK2
phosphoenolpyruvate carboxylase kinase 2
arTal_v1_Chr3_-_1914392_1914442 0.14 AT3G06310.2
AT3G06310.3
AT3G06310.1
AT3G06310
Cox19-like CHCH family protein
arTal_v1_Chr1_+_3938422_3938422 0.14 AT1G11680.1
CYP51G1
CYTOCHROME P450 51G1
arTal_v1_Chr1_+_97412_97412 0.13 AT1G01230.1
AT1G01230
ORMDL family protein
arTal_v1_Chr1_+_7640906_7640906 0.13 AT1G21740.1
AT1G21740
DUF630 family protein, putative (DUF630 and DUF632)
arTal_v1_Chr2_-_14122190_14122190 0.13 AT2G33320.1
AT2G33320
Calcium-dependent lipid-binding (CaLB domain) family protein
arTal_v1_Chr5_-_20891007_20891007 0.13 AT5G51430.1
EYE
conserved oligomeric Golgi complex component-related / COG complex component-like protein
arTal_v1_Chr5_+_16826542_16826542 0.13 AT5G42090.1
AT5G42090
Lung seven transmembrane receptor family protein
arTal_v1_Chr4_-_7470737_7470737 0.13 AT4G12650.1
AT4G12650
Endomembrane protein 70 protein family
arTal_v1_Chr1_+_24019490_24019490 0.13 AT1G64630.1
WNK10
with no lysine (K) kinase 10
arTal_v1_Chr3_-_18587352_18587352 0.12 AT3G50120.1
AT3G50120
transmembrane protein, putative (DUF247)
arTal_v1_Chr4_-_13398307_13398307 0.12 AT4G26540.1
AT4G26540
Leucine-rich repeat receptor-like protein kinase family protein
arTal_v1_Chr2_-_17090556_17090556 0.11 AT2G40950.1
BZIP17
Basic-leucine zipper (bZIP) transcription factor family protein
arTal_v1_Chr3_+_22400395_22400395 0.11 AT3G60600.3
AT3G60600.2
VAP27-1
vesicle associated protein
arTal_v1_Chr5_+_21548397_21548433 0.11 AT5G53140.1
AT5G53140.2
AT5G53140
Protein phosphatase 2C family protein
arTal_v1_Chr4_-_12471261_12471261 0.11 AT4G24015.1
AT4G24015
RING/U-box superfamily protein
arTal_v1_Chr3_+_22400110_22400110 0.11 AT3G60600.1
VAP27-1
vesicle associated protein
arTal_v1_Chr1_-_25477545_25477545 0.11 AT1G67930.1
AT1G67930
Golgi transport complex protein-like protein
arTal_v1_Chr1_+_1236754_1236754 0.10 AT1G04540.1
AT1G04540
Calcium-dependent lipid-binding (CaLB domain) family protein
arTal_v1_Chr5_+_24821203_24821203 0.10 AT5G61780.1
Tudor2
TUDOR-SN protein 2
arTal_v1_Chr1_+_19987117_19987191 0.10 AT1G53570.6
AT1G53570.2
AT1G53570.1
AT1G53570.7
AT1G53570.5
AT1G53570.4
AT1G53570.3
MAP3KA
mitogen-activated protein kinase kinase kinase 3
arTal_v1_Chr3_-_5038114_5038114 0.10 AT3G14960.1
AT3G14960
Galactosyltransferase family protein
arTal_v1_Chr3_-_5475347_5475347 0.09 AT3G16160.1
AT3G16160
Tesmin/TSO1-like CXC domain-containing protein
arTal_v1_Chr1_+_6913001_6913100 0.09 AT1G19910.1
AT1G19910.2
AVA-P2
ATPase, F0/V0 complex, subunit C protein
arTal_v1_Chr5_-_5262840_5262840 0.09 AT5G16110.1
AT5G16110
hypothetical protein
arTal_v1_Chr1_+_27959527_27959527 0.08 AT1G74380.1
XXT5
xyloglucan xylosyltransferase 5
arTal_v1_Chr3_+_20964643_20964656 0.08 AT3G56590.2
AT3G56590.1
AT3G56590
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr1_+_20763844_20763844 0.08 AT1G55580.1
LAS
GRAS family transcription factor
arTal_v1_Chr2_+_13141290_13141290 0.08 AT2G30870.1
GSTF10
glutathione S-transferase PHI 10
arTal_v1_Chr5_+_6652306_6652454 0.08 AT5G19690.1
AT5G19690.2
STT3A
staurosporin and temperature sensitive 3-like A
arTal_v1_Chr1_+_13225168_13225168 0.08 AT1G35720.1
ANNAT1
annexin 1
arTal_v1_Chr1_-_4855287_4855287 0.08 AT1G14200.1
AT1G14200
RING/U-box superfamily protein
arTal_v1_Chr2_-_12861910_12861971 0.07 AT2G30120.2
AT2G30120.6
AT2G30120.5
AT2G30120.1
AT2G30120.3
AT2G30120.4
AT2G30120
protein FLC EXPRESSOR
arTal_v1_Chr3_+_22134951_22134951 0.07 AT3G59920.1
GDI2
RAB GDP dissociation inhibitor 2
arTal_v1_Chr2_-_16957183_16957183 0.07 AT2G40620.1
AT2G40620
Basic-leucine zipper (bZIP) transcription factor family protein
arTal_v1_Chr5_+_22392063_22392063 0.07 AT5G55190.1
RAN3
RAN GTPase 3
arTal_v1_Chr5_-_17856740_17856740 0.07 AT5G44320.1
AT5G44320
Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
arTal_v1_Chr5_-_22702200_22702200 0.07 AT5G56050.1
AT5G56050
late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr4_+_9094402_9094402 0.06 AT4G16060.1
AT4G16060
hypothetical protein
arTal_v1_Chr1_+_12366810_12366831 0.06 AT1G34020.2
AT1G34020.1
AT1G34020.3
AT1G34020
Nucleotide-sugar transporter family protein
arTal_v1_Chr2_+_1515634_1515634 0.06 AT2G04350.1
LACS8
AMP-dependent synthetase and ligase family protein
arTal_v1_Chr1_+_8863768_8863919 0.06 AT1G25280.1
AT1G25280.3
AT1G25280.2
TLP10
tubby like protein 10
arTal_v1_Chr2_+_1515828_1515828 0.06 AT2G04350.2
LACS8
AMP-dependent synthetase and ligase family protein
arTal_v1_Chr1_+_24538886_24538886 0.05 AT1G65930.1
cICDH
cytosolic NADP+-dependent isocitrate dehydrogenase
arTal_v1_Chr1_+_19074328_19074328 0.05 AT1G51450.1
TRO
TRAUCO
arTal_v1_Chr5_-_1326928_1326928 0.05 AT5G04610.1
AT5G04610
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr3_-_138731_138799 0.05 AT3G01360.1
AT3G01360.2
AT3G01360
plant viral-response family protein (DUF716)
arTal_v1_Chr1_+_22080689_22080787 0.04 AT1G59980.1
AT1G59980.2
AT1G59980.3
ARL2
ARG1-like 2
arTal_v1_Chr2_-_18588452_18588452 0.04 AT2G45070.3
AT2G45070.4
SEC61 BETA
Preprotein translocase Sec, Sec61-beta subunit protein
arTal_v1_Chr1_+_26216009_26216009 0.04 AT1G69690.1
TCP15
TCP family transcription factor
arTal_v1_Chr2_-_18588141_18588259 0.04 AT2G45070.2
AT2G45070.1
SEC61 BETA
Preprotein translocase Sec, Sec61-beta subunit protein
arTal_v1_Chr3_-_1071438_1071438 0.04 AT3G04080.1
APY1
apyrase 1
arTal_v1_Chr2_-_4317862_4317882 0.04 AT2G10950.1
AT2G10950.2
AT2G10950.3
AT2G10950
BSD domain-containing protein
arTal_v1_Chr1_+_12072611_12072611 0.04 AT1G33280.1
NAC015
NAC domain containing protein 15
arTal_v1_Chr1_+_6971424_6971424 0.03 AT1G20110.1
AT1G20110
RING/FYVE/PHD zinc finger superfamily protein
arTal_v1_Chr5_+_20796950_20796950 0.03 AT5G51180.1
AT5G51180.2
AT5G51180
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr4_+_10311030_10311030 0.03 AT4G18770.1
MYB98
myb domain protein 98
arTal_v1_Chr5_+_7608242_7608242 0.03 AT5G22794.2
AT5G22794.1
AT5G22794
hypothetical protein
arTal_v1_Chr5_+_2455593_2455593 0.03 AT5G07720.1
XXT3
Galactosyl transferase GMA12/MNN10 family protein
arTal_v1_Chr5_-_10039286_10039286 0.03 AT5G28040.2
AT5G28040
DNA-binding storekeeper protein-related transcriptional regulator
arTal_v1_Chr5_-_5331694_5331694 0.02 AT5G16280.2
AT5G16280.1
AT5G16280
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr2_-_14359901_14360058 0.02 AT2G33980.1
AT2G33980.4
AT2G33980.2
AT2G33980.3
NUDT22
nudix hydrolase homolog 22
arTal_v1_Chr2_+_15158561_15158561 0.02 AT2G36090.1
AT2G36090
F-box family protein
arTal_v1_Chr2_+_14830626_14830626 0.01 AT2G35190.1
NPSN11
Putative plant snare 11
arTal_v1_Chr5_-_26699426_26699426 0.01 AT5G66850.2
AT5G66850.1
MAPKKK5
mitogen-activated protein kinase kinase kinase 5
arTal_v1_Chr5_-_10039001_10039001 0.01 AT5G28040.1
AT5G28040
DNA-binding storekeeper protein-related transcriptional regulator
arTal_v1_Chr3_+_21492145_21492167 0.00 AT3G58050.1
AT3G58050.2
AT3G58050
hypothetical protein
arTal_v1_Chr5_+_871204_871204 0.00 AT5G03490.1
AT5G03490
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr4_+_12564945_12564945 0.00 AT4G24220.1
AT4G24220.2
VEP1
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr1_-_24362054_24362054 0.00 AT1G65520.1
ECI1
delta(3), delta(2)-enoyl CoA isomerase 1
arTal_v1_Chr5_+_22799507_22799507 0.00 AT5G56300.1
GAMT2
gibberellic acid methyltransferase 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G36620

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0033499 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.2 0.8 GO:0030203 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.1 0.3 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.1 0.3 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.1 0.2 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 0.2 GO:0055047 generative cell mitosis(GO:0055047)
0.1 0.3 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.0 0.2 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.0 0.5 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.1 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
0.0 0.2 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.0 0.6 GO:0015865 purine nucleotide transport(GO:0015865)
0.0 0.2 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.0 0.1 GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.0 0.2 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.0 0.7 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.0 0.1 GO:0048358 mucilage pectin biosynthetic process(GO:0048358)
0.0 0.7 GO:0042026 protein refolding(GO:0042026)
0.0 0.2 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.1 GO:0080182 simple leaf morphogenesis(GO:0060776) histone H3-K4 trimethylation(GO:0080182)
0.0 0.1 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.0 0.2 GO:0018444 translation release factor complex(GO:0018444)
0.0 0.2 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.0 0.2 GO:0001673 male germ cell nucleus(GO:0001673)
0.0 0.1 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.0 0.2 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.2 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.1 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.2 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.0 0.1 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.3 GO:0010494 cytoplasmic stress granule(GO:0010494)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.2 0.8 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.1 0.3 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.3 GO:0070182 DNA polymerase binding(GO:0070182)
0.1 0.6 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.0 0.5 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.5 GO:0002020 protease binding(GO:0002020)
0.0 0.2 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.0 0.2 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.0 0.7 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.2 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 0.1 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.0 0.2 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.1 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.1 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.0 0.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.1 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 SIG CHEMOTAXIS Genes related to chemotaxis

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.0 0.1 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation