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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G36780
Z-value: 1.20
Transcription factors associated with AT4G36780
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G36780
|
AT4G36780 | BES1/BZR1 homolog 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BEH2 | arTal_v1_Chr4_-_17334355_17334355 | 0.36 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 3.43 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 2.87 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 2.35 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 2.08 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 1.66 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr5_+_17987591_17987591 Show fit | 1.61 |
AT5G44590.2
AT5G44590.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr2_+_19245591_19245684 Show fit | 1.59 |
AT2G46830.1
AT2G46830.2 |
circadian clock associated 1 |
|
| arTal_v1_Chr2_-_16603059_16603061 Show fit | 1.56 |
AT2G39800.2
AT2G39800.4 AT2G39800.3 |
delta1-pyrroline-5-carboxylate synthase 1 |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 1.52 |
AT2G47180.1
|
galactinol synthase 1 |
|
| arTal_v1_Chr2_+_19246681_19246681 Show fit | 1.51 |
AT2G46830.3
|
circadian clock associated 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G36780
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.9 | GO:0009644 | response to high light intensity(GO:0009644) |
| 0.4 | 4.6 | GO:0009610 | response to symbiotic fungus(GO:0009610) |
| 0.5 | 4.5 | GO:0009819 | drought recovery(GO:0009819) |
| 0.0 | 3.7 | GO:0009615 | response to virus(GO:0009615) |
| 0.0 | 3.1 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.2 | 3.0 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.5 | 2.9 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 2.9 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
| 0.5 | 2.7 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.2 | 2.7 | GO:0005986 | sucrose biosynthetic process(GO:0005986) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.0 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 6.2 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.0 | 4.8 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 4.7 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 4.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.6 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.1 | 2.9 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.0 | 2.7 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.0 | 2.7 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 2.3 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.8 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 5.8 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 3.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.5 | 3.1 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.7 | 2.9 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 2.6 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.0 | 2.2 | GO:0051015 | actin filament binding(GO:0051015) |
| 0.3 | 2.1 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.0 | 2.1 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
| 0.0 | 2.0 | GO:0003713 | transcription coactivator activity(GO:0003713) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.4 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.1 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.3 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.3 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
| 0.1 | 0.1 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | PID CDC42 PATHWAY | CDC42 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.2 | 0.7 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.6 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.1 | 0.6 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.2 | 0.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.3 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.0 | 0.3 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.3 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.0 | 0.2 | REACTOME RNA POL II TRANSCRIPTION | Genes involved in RNA Polymerase II Transcription |