Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT4G36920

Z-value: 0.58

Transcription factors associated with AT4G36920

Gene Symbol Gene ID Gene Info
AT4G36920
AT4G36920 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AP2arTal_v1_Chr4_+_17400610_17400724-0.165.8e-01Click!

Activity profile of AT4G36920 motif

Sorted Z-values of AT4G36920 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr2_-_18811085_18811125 0.78 AT2G45660.2
AT2G45660.1
AGL20
AGAMOUS-like 20
arTal_v1_Chr5_-_22115539_22115539 0.60 AT5G54470.1
BBX29
B-box type zinc finger family protein
arTal_v1_Chr4_-_1500100_1500100 0.52 AT4G03400.2
DFL2
Auxin-responsive GH3 family protein
arTal_v1_Chr4_-_14393381_14393381 0.52 AT4G29190.1
OZF2
Zinc finger C-x8-C-x5-C-x3-H type family protein
arTal_v1_Chr2_-_14146471_14146555 0.50 AT2G33380.2
AT2G33380.1
RD20
Caleosin-related family protein
arTal_v1_Chr4_-_1501599_1501599 0.49 AT4G03400.1
DFL2
Auxin-responsive GH3 family protein
arTal_v1_Chr2_+_15050677_15050677 0.49 AT2G35820.1
AT2G35820
ureidoglycolate hydrolase
arTal_v1_Chr2_+_15050498_15050498 0.49 AT2G35820.2
AT2G35820
ureidoglycolate hydrolase
arTal_v1_Chr5_+_6424779_6424779 0.47 AT5G19140.3
AILP1
aluminum induced protein with YGL and LRDR motifs
arTal_v1_Chr5_+_6423153_6423269 0.45 AT5G19140.2
AT5G19140.1
AILP1
aluminum induced protein with YGL and LRDR motifs
arTal_v1_Chr1_-_26796529_26796532 0.43 AT1G71030.1
AT1G71030.2
MYBL2
MYB-like 2
arTal_v1_Chr3_+_16525245_16525311 0.43 AT3G45140.1
AT3G45140.2
LOX2
lipoxygenase 2
arTal_v1_Chr2_+_17507343_17507343 0.41 AT2G41940.1
ZFP8
zinc finger protein 8
arTal_v1_Chr4_-_13019400_13019400 0.40 AT4G25480.1
DREB1A
dehydration response element B1A
arTal_v1_Chr5_+_25040540_25040540 0.39 AT5G62360.1
AT5G62360
Plant invertase/pectin methylesterase inhibitor superfamily protein
arTal_v1_Chr1_+_19806263_19806366 0.38 AT1G53160.1
AT1G53160.2
AT1G53160.3
SPL4
squamosa promoter binding protein-like 4
arTal_v1_Chr3_+_3923735_3923735 0.34 AT3G12320.2
AT3G12320
hypothetical protein
arTal_v1_Chr4_-_2332814_2332814 0.34 AT4G04630.1
AT4G04630
senescence regulator (Protein of unknown function, DUF584)
arTal_v1_Chr5_-_18026077_18026077 0.34 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
arTal_v1_Chr3_+_16818347_16818347 0.34 AT3G45780.2
PHOT1
phototropin 1
arTal_v1_Chr3_+_16816721_16816721 0.33 AT3G45780.1
PHOT1
phototropin 1
arTal_v1_Chr3_+_3923969_3923969 0.32 AT3G12320.3
AT3G12320
hypothetical protein
arTal_v1_Chr3_+_3923515_3923515 0.32 AT3G12320.1
AT3G12320
hypothetical protein
arTal_v1_Chr1_-_9649323_9649323 0.32 AT1G27730.1
STZ
salt tolerance zinc finger
arTal_v1_Chr1_+_4542168_4542168 0.29 AT1G13260.1
RAV1
related to ABI3/VP1 1
arTal_v1_Chr3_+_18840411_18840411 0.28 AT3G50700.1
IDD2
indeterminate(ID)-domain 2
arTal_v1_Chr2_+_19104632_19104683 0.27 AT2G46530.1
AT2G46530.2
ARF11
auxin response factor 11
arTal_v1_Chr5_-_1994824_1994961 0.27 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABCG22
ABC-2 type transporter family protein
arTal_v1_Chr1_-_18628452_18628452 0.26 AT1G50290.1
AT1G50290
hypothetical protein
arTal_v1_Chr2_+_19105112_19105112 0.25 AT2G46530.3
ARF11
auxin response factor 11
arTal_v1_Chr4_-_9834859_9834859 0.25 AT4G17670.1
AT4G17670
senescence-associated family protein (DUF581)
arTal_v1_Chr3_+_6710349_6710349 0.25 AT3G19370.3
AT3G19370.1
AT3G19370
filament-like protein (DUF869)
arTal_v1_Chr1_+_26604855_26604855 0.23 AT1G70560.1
TAA1
tryptophan aminotransferase of Arabidopsis 1
arTal_v1_Chr3_+_22434864_22434864 0.23 AT3G60690.1
AT3G60690
SAUR-like auxin-responsive protein family
arTal_v1_Chr3_+_6710720_6710720 0.23 AT3G19370.2
AT3G19370
filament-like protein (DUF869)
arTal_v1_Chr3_-_19453212_19453212 0.23 AT3G52480.1
AT3G52480
transmembrane protein
arTal_v1_Chr2_+_16765920_16765920 0.21 AT2G40130.2
AT2G40130
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr4_+_17369179_17369320 0.21 AT4G36870.3
AT4G36870.1
AT4G36870.4
BLH2
BEL1-like homeodomain 2
arTal_v1_Chr5_+_18264616_18264616 0.20 AT5G45160.1
RL2
Root hair defective 3 GTP-binding protein (RHD3)
arTal_v1_Chr2_+_16765709_16765709 0.20 AT2G40130.1
AT2G40130
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr5_-_1086761_1086772 0.20 AT5G04020.1
AT5G04020.2
AT5G04020
calmodulin binding protein
arTal_v1_Chr1_+_19783185_19783352 0.19 AT1G53090.3
AT1G53090.1
AT1G53090.2
AT1G53090.5
AT1G53090.4
SPA4
SPA1-related 4
arTal_v1_Chr3_-_9486924_9486924 0.19 AT3G25905.1
CLE27
CLAVATA3/ESR-RELATED 27
arTal_v1_Chr1_+_26141726_26141836 0.17 AT1G69530.2
AT1G69530.1
AT1G69530.3
AT1G69530.5
AT1G69530.4
EXPA1
expansin A1
arTal_v1_Chr3_-_1257017_1257017 0.17 AT3G04620.1
DAN1
Alba DNA/RNA-binding protein
arTal_v1_Chr5_+_4974671_4974671 0.17 AT5G15310.2
AT5G15310.4
AT5G15310.3
AT5G15310.1
MYB16
myb domain protein 16
arTal_v1_Chr1_-_6683533_6683559 0.17 AT1G19330.3
AT1G19330.1
AT1G19330.2
AT1G19330
histone deacetylase complex subunit
arTal_v1_Chr4_+_17368915_17368915 0.16 AT4G36870.2
BLH2
BEL1-like homeodomain 2
arTal_v1_Chr2_-_12228543_12228624 0.16 AT2G28550.6
AT2G28550.5
AT2G28550.4
AT2G28550.3
AT2G28550.1
AT2G28550.2
RAP2.7
related to AP2.7
arTal_v1_Chr4_-_9437206_9437206 0.16 AT4G16770.1
AT4G16770
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
arTal_v1_Chr4_+_16451876_16451876 0.15 AT4G34410.1
RRTF1
redox responsive transcription factor 1
arTal_v1_Chr5_-_26804249_26804271 0.15 AT5G67180.1
AT5G67180.3
AT5G67180.4
AT5G67180.2
TOE3
target of early activation tagged (EAT) 3
arTal_v1_Chr2_+_16886767_16886824 0.14 AT2G40435.2
AT2G40435.1
AT2G40435.3
AT2G40435
transcription factor SCREAM-like protein
arTal_v1_Chr2_-_19407098_19407098 0.14 AT2G47260.1
WRKY23
WRKY DNA-binding protein 23
arTal_v1_Chr1_-_8310916_8310916 0.14 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
arTal_v1_Chr1_-_6799764_6799764 0.13 AT1G19650.2
AT1G19650.1
AT1G19650.3
AT1G19650
Sec14p-like phosphatidylinositol transfer family protein
arTal_v1_Chr5_-_4693732_4693732 0.13 AT5G14550.2
AT5G14550.3
AT5G14550.4
AT5G14550
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
arTal_v1_Chr2_-_6668046_6668046 0.12 AT2G15320.1
AT2G15320
Leucine-rich repeat (LRR) family protein
arTal_v1_Chr1_+_4877506_4877506 0.12 AT1G14280.1
PKS2
phytochrome kinase substrate 2
arTal_v1_Chr4_-_484524_484524 0.11 AT4G01120.1
GBF2
G-box binding factor 2
arTal_v1_Chr4_+_10940662_10940746 0.11 AT4G20260.7
AT4G20260.9
AT4G20260.8
AT4G20260.10
AT4G20260.5
AT4G20260.6
AT4G20260.1
AT4G20260.4
AT4G20260.3
PCAP1
plasma-membrane associated cation-binding protein 1
arTal_v1_Chr4_+_10940414_10940414 0.11 AT4G20260.2
PCAP1
plasma-membrane associated cation-binding protein 1
arTal_v1_Chr3_-_1678968_1679061 0.10 AT3G05690.2
AT3G05690.1
NF-YA2
nuclear factor Y, subunit A2
arTal_v1_Chr1_-_371090_371090 0.10 AT1G02070.1
AT1G02070
zinc ion-binding protein
arTal_v1_Chr1_-_3099830_3099830 0.10 AT1G09570.4
AT1G09570.3
PHYA
phytochrome A
arTal_v1_Chr1_-_3100695_3100819 0.10 AT1G09570.5
AT1G09570.1
AT1G09570.6
PHYA
phytochrome A
arTal_v1_Chr4_-_10529092_10529092 0.10 AT4G19240.1
AT4G19240
hypothetical protein
arTal_v1_Chr1_-_3100357_3100357 0.09 AT1G09570.2
PHYA
phytochrome A
arTal_v1_Chr3_-_11384145_11384145 0.09 AT3G29575.1
AT3G29575.4
AT3G29575.3
AFP3
ABI five binding protein 3
arTal_v1_Chr3_+_20673564_20673564 0.09 AT3G55710.1
AT3G55710
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr1_+_4907887_4907917 0.08 AT1G14350.2
AT1G14350.3
FLP
Duplicated homeodomain-like superfamily protein
arTal_v1_Chr3_-_17579577_17579577 0.08 AT3G47680.1
AT3G47680
DNA binding protein
arTal_v1_Chr5_-_24292162_24292336 0.08 AT5G60400.2
AT5G60400.1
AT5G60400.3
AT5G60400
hypothetical protein
arTal_v1_Chr5_+_24910191_24910358 0.08 AT5G62000.2
AT5G62000.1
AT5G62000.3
AT5G62000.4
AT5G62000.5
ARF2
auxin response factor 2
arTal_v1_Chr2_-_8051316_8051316 0.08 AT2G18550.1
HB21
homeobox protein 21
arTal_v1_Chr1_+_3681679_3681679 0.07 AT1G11050.1
AT1G11050
Protein kinase superfamily protein
arTal_v1_Chr1_-_26804292_26804292 0.07 AT1G71050.1
HIPP20
Heavy metal transport/detoxification superfamily protein
arTal_v1_Chr4_-_9296089_9296089 0.07 AT4G16490.1
AT4G16490
ARM repeat superfamily protein
arTal_v1_Chr1_+_3957284_3957284 0.06 AT1G11730.1
AT1G11730
Galactosyltransferase family protein
arTal_v1_Chr5_+_17543991_17544025 0.06 AT5G43680.1
AT5G43680.2
AT5G43680
hypothetical protein
arTal_v1_Chr1_+_418416_418416 0.06 AT1G02205.2
CER1
Fatty acid hydroxylase superfamily
arTal_v1_Chr1_+_4908249_4908255 0.06 AT1G14350.1
AT1G14350.4
FLP
Duplicated homeodomain-like superfamily protein
arTal_v1_Chr1_+_10229808_10229808 0.06 AT1G29270.1
AT1G29270
transcription factor bHLH35-like protein
arTal_v1_Chr5_-_24765511_24765511 0.05 AT5G61590.1
AT5G61590
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_+_415074_415079 0.05 AT1G02190.1
AT1G02190.2
AT1G02190
Fatty acid hydroxylase superfamily
arTal_v1_Chr1_+_10230085_10230085 0.05 AT1G29270.2
AT1G29270
transcription factor bHLH35-like protein
arTal_v1_Chr2_+_19673293_19673293 0.05 AT2G48110.1
REF4
reduced epidermal fluorescence 4
arTal_v1_Chr2_-_17837618_17837618 0.05 AT2G42870.1
PAR1
phy rapidly regulated 1
arTal_v1_Chr5_-_25931384_25931384 0.04 AT5G64870.1
AT5G64870
SPFH/Band 7/PHB domain-containing membrane-associated protein family
arTal_v1_Chr4_+_10382856_10382856 0.04 AT4G18960.2
AT4G18960.4
AT4G18960.1
AT4G18960.3
AG
K-box region and MADS-box transcription factor family protein
arTal_v1_Chr2_-_17810265_17810265 0.04 AT2G42800.1
RLP29
receptor like protein 29
arTal_v1_Chr4_+_12909463_12909575 0.04 AT4G25170.1
AT4G25170.2
AT4G25170
Uncharacterized conserved protein (UCP012943)
arTal_v1_Chr1_-_27298649_27298715 0.04 AT1G72500.3
AT1G72500.2
AT1G72500.1
AT1G72500
inter alpha-trypsin inhibitor, heavy chain-like protein
arTal_v1_Chr3_+_5671018_5671018 0.04 AT3G16650.1
AT3G16650
Transducin/WD40 repeat-like superfamily protein
arTal_v1_Chr1_-_26052567_26052567 0.03 AT1G69295.1
PDCB4
plasmodesmata callose-binding protein 4
arTal_v1_Chr4_+_13639963_13639963 0.03 AT4G27240.2
AT4G27240
zinc finger (C2H2 type) family protein
arTal_v1_Chr2_+_6018558_6018558 0.03 AT2G14210.2
AT2G14210.1
AGL44
AGAMOUS-like 44
arTal_v1_Chr2_-_8008681_8008681 0.03 AT2G18470.3
PERK4
roline-rich extensin-like receptor kinase 4
arTal_v1_Chr1_-_26052721_26052721 0.03 AT1G69295.2
PDCB4
plasmodesmata callose-binding protein 4
arTal_v1_Chr4_+_13639641_13639641 0.02 AT4G27240.1
AT4G27240
zinc finger (C2H2 type) family protein
arTal_v1_Chr3_+_18635758_18635758 0.02 AT3G50270.1
AT3G50270
HXXXD-type acyl-transferase family protein
arTal_v1_Chr5_-_4694055_4694055 0.02 AT5G14550.1
AT5G14550
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
arTal_v1_Chr4_+_7669948_7670044 0.02 AT4G13210.2
AT4G13210.1
AT4G13210
Pectin lyase-like superfamily protein
arTal_v1_Chr1_-_27749248_27749248 0.02 AT1G73805.1
SARD1
Calmodulin binding protein-like protein
arTal_v1_Chr1_-_19081451_19081451 0.02 AT1G51460.1
ABCG13
ABC-2 type transporter family protein
arTal_v1_Chr5_-_20016857_20016857 0.02 AT5G49360.1
BXL1
beta-xylosidase 1
arTal_v1_Chr3_-_2383937_2383937 0.01 AT3G07450.1
AT3G07450
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr5_-_230051_230051 0.01 AT5G01600.1
FER1
ferretin 1
arTal_v1_Chr5_-_18800115_18800122 0.01 AT5G46340.2
AT5G46340.1
RWA1
O-acetyltransferase family protein
arTal_v1_Chr2_-_8008126_8008162 0.01 AT2G18470.2
AT2G18470.1
AT2G18470.4
PERK4
roline-rich extensin-like receptor kinase 4
arTal_v1_Chr3_-_15775873_15775873 0.00 AT3G43960.1
AT3G43960
Cysteine proteinases superfamily protein
arTal_v1_Chr1_-_8727212_8727212 0.00 AT1G24625.1
ZFP7
zinc finger protein 7
arTal_v1_Chr1_+_923390_923426 0.00 AT1G03710.1
AT1G03710.2
AT1G03710
Cystatin/monellin superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G36920

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0010597 green leaf volatile biosynthetic process(GO:0010597)
0.1 0.7 GO:0034763 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.4 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.1 0.3 GO:0010203 response to very low fluence red light stimulus(GO:0010203)
0.1 0.3 GO:0035264 multicellular organism growth(GO:0035264)
0.1 0.4 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.1 0.2 GO:0031114 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377) regulation of microtubule depolymerization(GO:0031114) negative regulation of microtubule polymerization(GO:0031115) cellular response to copper ion(GO:0071280) cellular response to iron ion(GO:0071281) intracellular transport of virus(GO:0075733) positive regulation of protein depolymerization(GO:1901881)
0.1 0.8 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.1 0.3 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.1 0.2 GO:0035017 cuticle pattern formation(GO:0035017)
0.1 0.2 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.0 0.4 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.4 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 0.1 GO:0050878 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.0 0.1 GO:1904062 positive regulation of potassium ion transport(GO:0043268) regulation of potassium ion transmembrane transport(GO:1901379) regulation of cation transmembrane transport(GO:1904062)
0.0 0.1 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.0 0.3 GO:0009641 shade avoidance(GO:0009641)
0.0 0.3 GO:0006284 base-excision repair(GO:0006284)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.0 0.5 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.1 0.4 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 0.7 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.2 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.1 0.3 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.1 0.2 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 0.5 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.0 0.3 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 1.0 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 0.1 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.0 0.1 GO:0016034 maleylacetoacetate isomerase activity(GO:0016034)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID E2F PATHWAY E2F transcription factor network
0.0 0.1 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1