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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G04340

Z-value: 0.13

Transcription factors associated with AT5G04340

Gene Symbol Gene ID Gene Info
AT5G04340
AT5G04340 6

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ZAT6arTal_v1_Chr5_-_1217362_12173620.087.8e-01Click!

Activity profile of AT5G04340 motif

Sorted Z-values of AT5G04340 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr5_+_17734706_17734708 0.13 AT5G44070.1
AT5G44070.2
CAD1
phytochelatin synthase 1 (PCS1)
arTal_v1_Chr1_+_22034423_22034423 0.11 AT1G59870.1
PEN3
ABC-2 and Plant PDR ABC-type transporter family protein
arTal_v1_Chr4_-_12107565_12107695 0.05 AT4G23100.1
AT4G23100.3
GSH1
glutamate-cysteine ligase
arTal_v1_Chr4_-_12107299_12107299 0.05 AT4G23100.2
GSH1
glutamate-cysteine ligase
arTal_v1_Chr5_-_9671015_9671015 0.05 AT5G27380.1
GSH2
glutathione synthetase 2
arTal_v1_Chr3_-_8734562_8734624 0.02 AT3G24170.3
AT3G24170.1
GR1
glutathione-disulfide reductase
arTal_v1_Chr3_-_8734362_8734362 0.02 AT3G24170.2
GR1
glutathione-disulfide reductase
arTal_v1_Chr1_-_1022108_1022108 0.01 AT1G03980.2
AT1G03980.3
AT1G03980.4
PCS2
phytochelatin synthase 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G04340

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0006750 glutathione biosynthetic process(GO:0006750) nonribosomal peptide biosynthetic process(GO:0019184)
0.0 0.1 GO:0046938 phytochelatin metabolic process(GO:0046937) phytochelatin biosynthetic process(GO:0046938) cellular response to cadmium ion(GO:0071276) cellular detoxification of cadmium ion(GO:0098849)
0.0 0.1 GO:0071366 cellular response to indolebutyric acid stimulus(GO:0071366)
0.0 0.0 GO:0010792 DNA double-strand break processing involved in repair via single-strand annealing(GO:0010792) double-strand break repair via single-strand annealing(GO:0045002)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0015446 arsenite secondary active transmembrane transporter activity(GO:0008490) arsenite-transmembrane transporting ATPase activity(GO:0015446) anion transmembrane-transporting ATPase activity(GO:0043225) cadmium ion binding(GO:0046870)
0.0 0.1 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.0 0.0 GO:0000403 Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)