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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G15210
Z-value: 0.27
Transcription factors associated with AT5G15210
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G15210
|
AT5G15210 | homeobox protein 30 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB30 | arTal_v1_Chr5_-_4939207_4939207 | -0.33 | 2.5e-01 | Click! |
Activity profile of AT5G15210 motif
Sorted Z-values of AT5G15210 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_24167996_24168072 | 0.27 |
AT5G60020.1
AT5G60020.2 |
LAC17
|
laccase 17 |
| arTal_v1_Chr4_-_10316886_10316886 | 0.27 |
AT4G18780.1
|
IRX1
|
cellulose synthase family protein |
| arTal_v1_Chr2_-_15589369_15589369 | 0.24 |
AT2G37090.1
|
IRX9
|
Nucleotide-diphospho-sugar transferases superfamily protein |
| arTal_v1_Chr1_-_19161552_19161552 | 0.22 |
AT1G51680.3
AT1G51680.2 |
4CL1
|
4-coumarate:CoA ligase 1 |
| arTal_v1_Chr2_-_17060652_17060652 | 0.22 |
AT2G40890.1
|
CYP98A3
|
cytochrome P450, family 98, subfamily A, polypeptide 3 |
| arTal_v1_Chr1_-_28302728_28302728 | 0.21 |
AT1G75410.3
AT1G75410.1 |
BLH3
|
BEL1-like homeodomain 3 |
| arTal_v1_Chr1_-_19161737_19161737 | 0.21 |
AT1G51680.1
|
4CL1
|
4-coumarate:CoA ligase 1 |
| arTal_v1_Chr5_+_24168245_24168245 | 0.19 |
AT5G60020.3
|
LAC17
|
laccase 17 |
| arTal_v1_Chr1_-_28302571_28302571 | 0.18 |
AT1G75410.2
|
BLH3
|
BEL1-like homeodomain 3 |
| arTal_v1_Chr4_+_14034536_14034614 | 0.06 |
AT4G28370.3
AT4G28370.2 AT4G28370.1 AT4G28370.4 |
AT4G28370
|
RING/U-box superfamily protein |
| arTal_v1_Chr3_+_3203988_3203988 | 0.05 |
AT3G10340.1
|
PAL4
|
phenylalanine ammonia-lyase 4 |
| arTal_v1_Chr3_-_6421983_6422141 | 0.03 |
AT3G18660.1
AT3G18660.3 AT3G18660.2 |
PGSIP1
|
plant glycogenin-like starch initiation protein 1 |
| arTal_v1_Chr5_+_25050679_25050679 | 0.03 |
AT5G62380.2
|
NAC101
|
NAC-domain protein 101 |
| arTal_v1_Chr5_-_24422274_24422274 | 0.03 |
AT5G60720.1
|
AT5G60720
|
electron transporter, putative (Protein of unknown function, DUF547) |
| arTal_v1_Chr5_+_25050152_25050152 | 0.01 |
AT5G62380.1
|
NAC101
|
NAC-domain protein 101 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G15210
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | GO:0009805 | coumarin biosynthetic process(GO:0009805) |
| 0.1 | 0.3 | GO:0010116 | positive regulation of abscisic acid biosynthetic process(GO:0010116) |
| 0.0 | 0.3 | GO:0010417 | glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417) |
| 0.0 | 0.0 | GO:0090058 | metaxylem development(GO:0090058) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | GO:0046409 | p-coumarate 3-hydroxylase activity(GO:0046409) |
| 0.1 | 0.2 | GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517) |
| 0.0 | 0.4 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
| 0.0 | 0.5 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 0.0 | GO:0080116 | glucuronoxylan glucuronosyltransferase activity(GO:0080116) |
| 0.0 | 0.0 | GO:0045548 | phenylalanine ammonia-lyase activity(GO:0045548) |