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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G15840
Z-value: 0.20
Transcription factors associated with AT5G15840
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G15840
|
AT5G15840 | B-box type zinc finger protein with CCT domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CO | arTal_v1_Chr5_-_5173083_5173085 | 0.54 | 4.5e-02 | Click! |
Activity profile of AT5G15840 motif
Sorted Z-values of AT5G15840 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18811085_18811125 | 0.40 |
AT2G45660.2
AT2G45660.1 |
AGL20
|
AGAMOUS-like 20 |
| arTal_v1_Chr3_-_20629295_20629295 | 0.40 |
AT3G55610.1
|
P5CS2
|
delta 1-pyrroline-5-carboxylate synthase 2 |
| arTal_v1_Chr3_-_20629093_20629093 | 0.39 |
AT3G55610.2
|
P5CS2
|
delta 1-pyrroline-5-carboxylate synthase 2 |
| arTal_v1_Chr1_-_23320427_23320427 | 0.02 |
AT1G62960.1
|
ACS10
|
ACC synthase 10 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G15840
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.0 | 0.4 | GO:0010077 | maintenance of inflorescence meristem identity(GO:0010077) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |