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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G16560

Z-value: 0.85

Transcription factors associated with AT5G16560

Gene Symbol Gene ID Gene Info
AT5G16560
AT5G16560 Homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
KANarTal_v1_Chr5_-_5411766_54117660.723.6e-03Click!

Activity profile of AT5G16560 motif

Sorted Z-values of AT5G16560 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr5_-_24083528_24083562 0.99 AT5G59780.2
AT5G59780.1
AT5G59780.3
MYB59
myb domain protein 59
arTal_v1_Chr3_-_6901334_6901334 0.91 AT3G19850.1
AT3G19850
Phototropic-responsive NPH3 family protein
arTal_v1_Chr4_+_9560078_9560135 0.90 AT4G16990.16
AT4G16990.17
AT4G16990.1
AT4G16990.3
AT4G16990.4
RLM3
disease resistance protein (TIR-NBS class)
arTal_v1_Chr5_-_22030060_22030099 0.88 AT5G54250.2
AT5G54250.1
AT5G54250.4
AT5G54250.3
CNGC4
cyclic nucleotide-gated cation channel 4
arTal_v1_Chr5_-_21453980_21453980 0.87 AT5G52900.1
MAKR6
membrane-associated kinase regulator
arTal_v1_Chr4_+_9558571_9558721 0.86 AT4G16990.5
AT4G16990.8
AT4G16990.7
AT4G16990.6
AT4G16990.2
AT4G16990.9
RLM3
disease resistance protein (TIR-NBS class)
arTal_v1_Chr1_-_19225690_19225797 0.84 AT1G51805.2
AT1G51805.1
AT1G51805
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr1_-_12053935_12053935 0.80 AT1G33240.2
GTL1
GT-2-like 1
arTal_v1_Chr4_-_16384468_16384468 0.79 AT4G34220.1
AT4G34220
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr5_-_16195751_16195888 0.78 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
arTal_v1_Chr3_-_5271984_5271984 0.76 AT3G15570.1
AT3G15570
Phototropic-responsive NPH3 family protein
arTal_v1_Chr2_+_17507343_17507343 0.76 AT2G41940.1
ZFP8
zinc finger protein 8
arTal_v1_Chr1_-_12054753_12054753 0.76 AT1G33240.1
AT1G33240.3
GTL1
GT-2-like 1
arTal_v1_Chr1_-_24936512_24936512 0.76 AT1G66840.1
AT1G66840.2
PMI2
PLASTID MOVEMENT IMPAIRED protein (DUF827)
arTal_v1_Chr2_-_7748502_7748502 0.75 AT2G17820.1
HK1
histidine kinase 1
arTal_v1_Chr4_+_9559738_9559738 0.73 AT4G16990.11
AT4G16990.13
AT4G16990.12
RLM3
disease resistance protein (TIR-NBS class)
arTal_v1_Chr4_-_13672413_13672413 0.73 AT4G27300.1
AT4G27300
S-locus lectin protein kinase family protein
arTal_v1_Chr2_-_17777717_17777717 0.71 AT2G42690.1
AT2G42690
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr5_-_10295283_10295283 0.67 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
arTal_v1_Chr4_-_15947026_15947072 0.67 AT4G33050.4
AT4G33050.3
AT4G33050.6
AT4G33050.2
AT4G33050.1
AT4G33050.5
EDA39
calmodulin-binding family protein
arTal_v1_Chr4_+_9560633_9560633 0.63 AT4G16990.19
AT4G16990.18
RLM3
disease resistance protein (TIR-NBS class)
arTal_v1_Chr1_-_7569905_7570014 0.63 AT1G21590.2
AT1G21590.1
AT1G21590
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
arTal_v1_Chr2_-_7103928_7103928 0.61 AT2G16400.1
BLH7
BEL1-like homeodomain 7
arTal_v1_Chr4_+_9559908_9559908 0.61 AT4G16990.15
AT4G16990.14
RLM3
disease resistance protein (TIR-NBS class)
arTal_v1_Chr1_-_22756295_22756387 0.58 AT1G61660.2
AT1G61660.4
AT1G61660.3
AT1G61660.5
AT1G61660.6
AT1G61660.1
AT1G61660.7
AT1G61660
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr1_-_26240843_26240843 0.56 AT1G69760.1
AT1G69760
suppressor SRP40-like protein
arTal_v1_Chr1_+_28932868_28932868 0.45 AT1G76990.3
AT1G76990.2
ACR3
ACT domain repeat 3
arTal_v1_Chr5_-_25398282_25398282 0.45 AT5G63410.1
AT5G63410
Leucine-rich repeat protein kinase family protein
arTal_v1_Chr1_-_12984640_12984740 0.44 AT1G35350.2
AT1G35350.1
AT1G35350
EXS (ERD1/XPR1/SYG1) family protein
arTal_v1_Chr2_-_13222642_13222642 0.44 AT2G31070.1
TCP10
TCP domain protein 10
arTal_v1_Chr2_+_18152078_18152078 0.44 AT2G43820.1
UGT74F2
UDP-glucosyltransferase 74F2
arTal_v1_Chr2_+_11545656_11545656 0.43 AT2G27050.1
EIL1
ETHYLENE-INSENSITIVE3-like 1
arTal_v1_Chr5_-_24765511_24765511 0.40 AT5G61590.1
AT5G61590
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr3_+_1430363_1430363 0.39 AT3G05120.1
GID1A
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr4_-_12725835_12725835 0.39 AT4G24660.1
HB22
homeobox protein 22
arTal_v1_Chr4_-_12725637_12725637 0.39 AT4G24660.2
HB22
homeobox protein 22
arTal_v1_Chr1_-_19472582_19472582 0.38 AT1G52290.2
AT1G52290.1
PERK15
Protein kinase superfamily protein
arTal_v1_Chr1_+_8976326_8976326 0.37 AT1G25550.2
AT1G25550.1
AT1G25550
myb-like transcription factor family protein
arTal_v1_Chr1_-_67625_67774 0.36 AT1G01140.2
AT1G01140.3
AT1G01140.1
CIPK9
CBL-interacting protein kinase 9
arTal_v1_Chr4_-_17666736_17666736 0.35 AT4G37590.1
NPY5
Phototropic-responsive NPH3 family protein
arTal_v1_Chr2_-_13005600_13005746 0.35 AT2G30520.2
AT2G30520.3
AT2G30520.1
RPT2
Phototropic-responsive NPH3 family protein
arTal_v1_Chr1_+_28932359_28932359 0.33 AT1G76990.5
ACR3
ACT domain repeat 3
arTal_v1_Chr1_+_28932119_28932162 0.33 AT1G76990.1
AT1G76990.4
ACR3
ACT domain repeat 3
arTal_v1_Chr4_+_9558962_9558962 0.32 AT4G16990.10
RLM3
disease resistance protein (TIR-NBS class)
arTal_v1_Chr5_-_3065889_3065889 0.32 AT5G09850.2
AT5G09850.1
AT5G09850.3
AT5G09850.4
AT5G09850.5
AT5G09850
Transcription elongation factor (TFIIS) family protein
arTal_v1_Chr1_-_8189220_8189234 0.27 AT1G23090.4
AT1G23090.1
AT1G23090.3
AT1G23090.2
AST91
sulfate transporter 91
arTal_v1_Chr5_-_19218007_19218007 0.27 AT5G47370.1
HAT2
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
arTal_v1_Chr2_-_13190339_13190458 0.23 AT2G30990.1
AT2G30990.2
AT2G30990.5
AT2G30990.4
AT2G30990.3
AT2G30990
arginine N-methyltransferase, putative (DUF688)
arTal_v1_Chr1_-_27276317_27276317 0.21 AT1G72450.2
JAZ6
jasmonate-zim-domain protein 6
arTal_v1_Chr2_-_856725_856725 0.21 AT2G02950.1
PKS1
phytochrome kinase substrate 1
arTal_v1_Chr4_+_12503672_12503672 0.20 AT4G24060.1
AT4G24060
Dof-type zinc finger DNA-binding family protein
arTal_v1_Chr1_-_27276562_27276562 0.19 AT1G72450.1
JAZ6
jasmonate-zim-domain protein 6
arTal_v1_Chr2_-_16440544_16440544 0.19 AT2G39360.1
AT2G39360
Protein kinase superfamily protein
arTal_v1_Chr2_-_16824461_16824461 0.19 AT2G40270.2
AT2G40270
Protein kinase family protein
arTal_v1_Chr2_-_16825160_16825160 0.17 AT2G40270.1
AT2G40270
Protein kinase family protein
arTal_v1_Chr4_-_18125559_18125559 0.14 AT4G38840.1
AT4G38840
SAUR-like auxin-responsive protein family
arTal_v1_Chr4_-_13194124_13194124 0.14 AT4G25990.1
AT4G25990.3
CIL
CCT motif family protein
arTal_v1_Chr3_+_6934568_6934627 0.13 AT3G19930.1
AT3G19930.2
STP4
sugar transporter 4
arTal_v1_Chr5_-_19291103_19291103 0.07 AT5G47560.1
TDT
tonoplast dicarboxylate transporter
arTal_v1_Chr5_-_26915490_26915490 0.05 AT5G67440.3
NPY3
Phototropic-responsive NPH3 family protein
arTal_v1_Chr4_-_9994433_9994524 0.03 AT4G18010.2
AT4G18010.1
IP5PII
myo-inositol polyphosphate 5-phosphatase 2
arTal_v1_Chr3_-_22742772_22742772 0.02 AT3G61460.1
BRH1
brassinosteroid-responsive RING-H2
arTal_v1_Chr4_-_13193620_13193620 0.02 AT4G25990.2
CIL
CCT motif family protein
arTal_v1_Chr1_-_10073549_10073549 0.00 AT1G28660.1
AT1G28660
GDSL-like Lipase/Acylhydrolase superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G16560

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 4.1 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.2 1.0 GO:0035865 cellular response to potassium ion(GO:0035865)
0.2 1.6 GO:2000037 negative regulation of DNA endoreduplication(GO:0032876) regulation of stomatal complex patterning(GO:2000037)
0.1 0.7 GO:0071493 cellular response to UV-B(GO:0071493)
0.1 0.4 GO:0018874 benzoate metabolic process(GO:0018874)
0.1 0.7 GO:0010375 stomatal complex patterning(GO:0010375)
0.1 0.4 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.0 0.4 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.0 0.4 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.0 0.8 GO:0009904 chloroplast accumulation movement(GO:0009904)
0.0 0.6 GO:0009638 phototropism(GO:0009638)
0.0 0.4 GO:0006817 phosphate ion transport(GO:0006817)
0.0 0.7 GO:0010197 karyogamy(GO:0000741) polar nucleus fusion(GO:0010197)
0.0 0.3 GO:0009641 shade avoidance(GO:0009641)
0.0 0.8 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.0 0.9 GO:0009626 plant-type hypersensitive response(GO:0009626)
0.0 0.7 GO:0048544 recognition of pollen(GO:0048544)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.1 0.4 GO:0010331 gibberellin binding(GO:0010331)
0.1 0.7 GO:0005034 osmosensor activity(GO:0005034)
0.1 4.1 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 0.7 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.0 1.1 GO:0016597 amino acid binding(GO:0016597)
0.0 0.4 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.7 GO:0031625 ubiquitin protein ligase binding(GO:0031625)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport