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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G29000

Z-value: 1.02

Transcription factors associated with AT5G29000

Gene Symbol Gene ID Gene Info
AT5G29000
AT5G29000 Homeodomain-like superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PHL1arTal_v1_Chr5_-_11024865_11024978-0.165.8e-01Click!

Activity profile of AT5G29000 motif

Sorted Z-values of AT5G29000 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr1_+_9829261_9829261 1.55 AT1G28135.1
AT1G28135
hypothetical protein
arTal_v1_Chr5_+_21240717_21240717 0.86 AT5G52310.1
LTI78
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
arTal_v1_Chr2_+_873506_873506 0.83 AT2G02990.1
RNS1
ribonuclease 1
arTal_v1_Chr3_+_11527756_11527756 0.68 AT3G29670.1
PMAT2
HXXXD-type acyl-transferase family protein
arTal_v1_Chr5_-_2961382_2961382 0.59 AT5G09530.1
PELPK1
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_+_13381767_13381767 0.58 AT2G31380.1
STH
salt tolerance homologue
arTal_v1_Chr4_-_993039_993039 0.58 AT4G02270.1
RHS13
root hair specific 13
arTal_v1_Chr1_+_3019639_3019639 0.57 AT1G09350.1
GolS3
galactinol synthase 3
arTal_v1_Chr3_-_17475274_17475274 0.57 AT3G47420.3
AT3G47420.1
AT3G47420.2
G3Pp1
putative glycerol-3-phosphate transporter 1
arTal_v1_Chr5_+_1835047_1835047 0.57 AT5G06090.1
GPAT7
glycerol-3-phosphate acyltransferase 7
arTal_v1_Chr3_+_3595694_3595694 0.56 AT3G11430.1
GPAT5
glycerol-3-phosphate acyltransferase 5
arTal_v1_Chr4_-_18275017_18275216 0.56 AT4G39260.4
AT4G39260.3
AT4G39260.2
AT4G39260.1
CCR1
cold, circadian rhythm, and RNA binding 1
arTal_v1_Chr5_+_5594632_5594724 0.55 AT5G17020.1
AT5G17020.2
XPO1A
exportin 1A
arTal_v1_Chr3_+_2907479_2907479 0.54 AT3G09450.1
AT3G09450
fusaric acid resistance family protein
arTal_v1_Chr2_+_17945662_17945662 0.52 AT2G43150.1
AT2G43150
Proline-rich extensin-like family protein
arTal_v1_Chr1_+_2984829_2984829 0.51 AT1G09240.1
NAS3
nicotianamine synthase 3
arTal_v1_Chr1_+_3020221_3020221 0.51 AT1G09350.2
GolS3
galactinol synthase 3
arTal_v1_Chr4_-_810574_810611 0.50 AT4G01870.1
AT4G01870.2
AT4G01870
tolB protein-like protein
arTal_v1_Chr1_-_5277689_5277689 0.49 AT1G15340.2
MBD10
methyl-CPG-binding domain 10
arTal_v1_Chr4_-_8854706_8854706 0.49 AT4G15490.1
UGT84A3
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr1_-_5277869_5277869 0.49 AT1G15340.1
MBD10
methyl-CPG-binding domain 10
arTal_v1_Chr1_+_28975255_28975255 0.48 AT1G77120.1
ADH1
alcohol dehydrogenase 1
arTal_v1_Chr2_-_18646606_18646606 0.47 AT2G45220.1
AT2G45220
Plant invertase/pectin methylesterase inhibitor superfamily
arTal_v1_Chr3_+_5471735_5471735 0.46 AT3G16150.1
ASPGB1
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
arTal_v1_Chr3_-_9684657_9684657 0.45 AT3G26460.1
AT3G26460
Polyketide cyclase/dehydrase and lipid transport superfamily protein
arTal_v1_Chr2_-_16690182_16690182 0.45 AT2G39980.1
AT2G39980
HXXXD-type acyl-transferase family protein
arTal_v1_Chr1_-_22871298_22871358 0.44 AT1G61890.3
AT1G61890.1
AT1G61890.2
AT1G61890
MATE efflux family protein
arTal_v1_Chr3_-_15092521_15092521 0.44 AT3G43110.1
AT3G43110
transmembrane protein
arTal_v1_Chr5_-_9011618_9011618 0.44 AT5G25840.1
AT5G25840
DUF1677 family protein (DUF1677)
arTal_v1_Chr5_-_19291103_19291103 0.43 AT5G47560.1
TDT
tonoplast dicarboxylate transporter
arTal_v1_Chr2_+_11364996_11364996 0.42 AT2G26695.2
AT2G26695.1
AT2G26695
Ran BP2/NZF zinc finger-like superfamily protein
arTal_v1_Chr4_+_13130291_13130291 0.41 AT4G25820.1
XTH14
xyloglucan endotransglucosylase/hydrolase 14
arTal_v1_Chr5_-_5177897_5177897 0.41 AT5G15850.1
COL1
CONSTANS-like 1
arTal_v1_Chr4_+_13116028_13116028 0.40 AT4G25760.1
GDU2
glutamine dumper 2
arTal_v1_Chr5_+_2803833_2803957 0.39 AT5G08640.1
AT5G08640.2
FLS1
flavonol synthase 1
arTal_v1_Chr1_-_24595544_24595544 0.39 AT1G66060.1
AT1G66060
hypothetical protein (DUF577)
arTal_v1_Chr5_-_7805968_7805968 0.39 AT5G23190.1
CYP86B1
cytochrome P450, family 86, subfamily B, polypeptide 1
arTal_v1_Chr3_-_1261634_1261683 0.38 AT3G04640.2
AT3G04640.1
AT3G04640.3
AT3G04640
glycine-rich protein
arTal_v1_Chr5_+_4541780_4541780 0.38 AT5G14070.1
ROXY2
Thioredoxin superfamily protein
arTal_v1_Chr3_+_8641181_8641181 0.38 AT3G23920.1
BAM1
beta-amylase 1
arTal_v1_Chr3_-_1756924_1756924 0.38 AT3G05880.1
RCI2A
Low temperature and salt responsive protein family
arTal_v1_Chr4_-_15941493_15941493 0.38 AT4G33040.1
AT4G33040
Thioredoxin superfamily protein
arTal_v1_Chr3_-_21293158_21293171 0.38 AT3G57520.2
AT3G57520.3
AT3G57520.1
SIP2
seed imbibition 2
arTal_v1_Chr4_-_14542565_14542565 0.38 AT4G29690.1
AT4G29690
Alkaline-phosphatase-like family protein
arTal_v1_Chr4_-_17672353_17672353 0.37 AT4G37610.1
BT5
BTB and TAZ domain protein 5
arTal_v1_Chr1_+_25508639_25508639 0.36 AT1G68050.1
FKF1
flavin-binding, kelch repeat, f box 1
arTal_v1_Chr2_+_13036814_13036925 0.36 AT2G30600.4
AT2G30600.5
AT2G30600.1
AT2G30600.3
AT2G30600
BTB/POZ domain-containing protein
arTal_v1_Chr3_-_7228797_7228797 0.36 AT3G20660.1
OCT4
organic cation/carnitine transporter4
arTal_v1_Chr3_+_18291339_18291429 0.36 AT3G49330.2
AT3G49330.1
AT3G49330
Plant invertase/pectin methylesterase inhibitor superfamily protein
arTal_v1_Chr4_-_15401225_15401225 0.36 AT4G31830.1
AT4G31830
transmembrane protein
arTal_v1_Chr5_-_19040456_19040456 0.36 AT5G46900.1
AT5G46900
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr3_-_4660945_4660945 0.35 AT3G14067.1
AT3G14067
Subtilase family protein
arTal_v1_Chr2_+_13037238_13037238 0.35 AT2G30600.6
AT2G30600.2
AT2G30600
BTB/POZ domain-containing protein
arTal_v1_Chr2_+_19476326_19476326 0.35 AT2G47460.1
MYB12
myb domain protein 12
arTal_v1_Chr2_-_918671_918671 0.35 AT2G03090.1
EXPA15
expansin A15
arTal_v1_Chr5_+_6225956_6225956 0.35 AT5G18670.1
BMY3
beta-amylase 3
arTal_v1_Chr1_-_10356482_10356482 0.35 AT1G29640.1
AT1G29640
senescence regulator (Protein of unknown function, DUF584)
arTal_v1_Chr3_-_845096_845096 0.35 AT3G03530.1
NPC4
non-specific phospholipase C4
arTal_v1_Chr5_+_25692425_25692425 0.35 AT5G64230.1
AT5G64230
1,8-cineole synthase
arTal_v1_Chr5_-_5904380_5904380 0.34 AT5G17860.2
CAX7
calcium exchanger 7
arTal_v1_Chr5_-_6993948_6993948 0.34 AT5G20670.1
AT5G20670
DUF1677 family protein (DUF1677)
arTal_v1_Chr5_+_8354637_8354637 0.34 AT5G24460.1
AT5G24460
RING-H2 zinc finger protein
arTal_v1_Chr3_+_21701520_21701520 0.34 AT3G58660.1
AT3G58660
Ribosomal protein L1p/L10e family
arTal_v1_Chr1_-_867705_867733 0.34 AT1G03470.2
AT1G03470.1
AT1G03470.3
AT1G03470.4
NET3A
Kinase interacting (KIP1-like) family protein
arTal_v1_Chr2_+_249687_249687 0.34 AT2G01554.1
AT2G01554
hypothetical protein
arTal_v1_Chr3_+_5008676_5008742 0.34 AT3G14890.1
AT3G14890.2
AT3G14890
phosphoesterase
arTal_v1_Chr5_-_5904532_5904532 0.34 AT5G17860.1
CAX7
calcium exchanger 7
arTal_v1_Chr5_+_24778191_24778191 0.34 AT5G61650.1
CYCP4%3B2
CYCLIN P4;2
arTal_v1_Chr5_-_25804980_25804980 0.34 AT5G64550.1
AT5G64550
loricrin-like protein
arTal_v1_Chr1_+_28005551_28005551 0.34 AT1G74510.3
AT1G74510.2
AT1G74510
Galactose oxidase/kelch repeat superfamily protein
arTal_v1_Chr3_-_12451556_12451556 0.33 AT3G30775.2
AT3G30775.1
ERD5
Methylenetetrahydrofolate reductase family protein
arTal_v1_Chr1_+_26315787_26315787 0.33 AT1G69870.1
NRT1.7
nitrate transporter 1.7
arTal_v1_Chr1_+_6100964_6101015 0.33 AT1G17745.1
AT1G17745.2
PGDH
D-3-phosphoglycerate dehydrogenase
arTal_v1_Chr3_-_21499943_21499943 0.33 AT3G58060.1
AT3G58060
Cation efflux family protein
arTal_v1_Chr4_-_13222376_13222376 0.33 AT4G26080.1
ABI1
Protein phosphatase 2C family protein
arTal_v1_Chr5_+_17324909_17324909 0.33 AT5G43150.1
AT5G43150
elongation factor
arTal_v1_Chr3_-_1774589_1774594 0.33 AT3G05936.1
AT3G05936.2
AT3G05936
hypothetical protein
arTal_v1_Chr3_+_5025383_5025383 0.33 AT3G14940.2
PPC3
phosphoenolpyruvate carboxylase 3
arTal_v1_Chr4_-_16942060_16942060 0.33 AT4G35750.1
AT4G35750
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
arTal_v1_Chr3_+_5025184_5025184 0.33 AT3G14940.1
PPC3
phosphoenolpyruvate carboxylase 3
arTal_v1_Chr4_-_16241169_16241169 0.33 AT4G33880.1
RSL2
ROOT HAIR DEFECTIVE 6-LIKE 2
arTal_v1_Chr1_+_1279351_1279351 0.33 AT1G04610.1
YUC3
YUCCA 3
arTal_v1_Chr1_-_3444360_3444360 0.33 AT1G10470.1
ARR4
response regulator 4
arTal_v1_Chr5_-_8797349_8797349 0.32 AT5G25350.1
EBF2
EIN3-binding F box protein 2
arTal_v1_Chr2_+_13987669_13987669 0.32 AT2G32960.1
PFA-DSP2
Phosphotyrosine protein phosphatases superfamily protein
arTal_v1_Chr4_-_6302744_6302744 0.32 AT4G10080.1
AT4G10080
transmembrane protein
arTal_v1_Chr1_-_3443957_3443957 0.32 AT1G10470.3
AT1G10470.2
ARR4
response regulator 4
arTal_v1_Chr3_-_21869036_21869036 0.32 AT3G59140.1
ABCC10
multidrug resistance-associated protein 14
arTal_v1_Chr3_-_18456125_18456125 0.32 AT3G49760.1
bZIP5
basic leucine-zipper 5
arTal_v1_Chr2_+_8026957_8026957 0.32 AT2G18500.1
OFP7
ovate family protein 7
arTal_v1_Chr1_-_22363854_22363854 0.31 AT1G60750.1
AT1G60750
NAD(P)-linked oxidoreductase superfamily protein
arTal_v1_Chr2_-_12685145_12685151 0.31 AT2G29670.2
AT2G29670.1
AT2G29670
Tetratricopeptide repeat (TPR)-like superfamily protein
arTal_v1_Chr3_-_4834015_4834015 0.31 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
arTal_v1_Chr4_-_9366748_9366748 0.31 AT4G16630.1
AT4G16630
DEA(D/H)-box RNA helicase family protein
arTal_v1_Chr5_-_17755742_17755768 0.31 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr5_+_1192259_1192269 0.31 AT5G04280.2
AT5G04280.1
AT5G04280.3
AT5G04280.4
AtRZ-1c
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
arTal_v1_Chr3_-_7629205_7629205 0.31 AT3G21670.1
AT3G21670
Major facilitator superfamily protein
arTal_v1_Chr1_+_23993477_23993477 0.31 AT1G64590.1
AT1G64590
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr5_-_13364411_13364411 0.30 AT5G35110.1
AT5G35110
hypothetical protein
arTal_v1_Chr2_+_14685170_14685170 0.30 AT2G34810.1
AT2G34810
FAD-binding Berberine family protein
arTal_v1_Chr1_-_4229211_4229211 0.30 AT1G12420.1
ACR8
ACT domain repeat 8
arTal_v1_Chr5_+_4460840_4460840 0.30 AT5G13820.1
TBP1
telomeric DNA binding protein 1
arTal_v1_Chr1_+_27920241_27920241 0.30 AT1G74250.1
AT1G74250
DNAJ heat shock N-terminal domain-containing protein
arTal_v1_Chr4_+_17515042_17515042 0.30 AT4G37220.1
AT4G37220
Cold acclimation protein WCOR413 family
arTal_v1_Chr2_-_15560755_15560755 0.29 AT2G37040.1
PAL1
PHE ammonia lyase 1
arTal_v1_Chr5_+_5205869_5205869 0.29 AT5G15950.1
AT5G15950
Adenosylmethionine decarboxylase family protein
arTal_v1_Chr5_+_26311587_26311587 0.29 AT5G65770.2
AT5G65770.1
LINC4
little nuclei4
arTal_v1_Chr1_+_12004854_12004927 0.29 AT1G33110.1
AT1G33110.2
AT1G33110
MATE efflux family protein
arTal_v1_Chr1_-_12398418_12398418 0.29 AT1G34060.1
AT1G34060
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
arTal_v1_Chr4_+_12827856_12827937 0.28 AT4G24960.1
AT4G24960.3
AT4G24960.2
HVA22D
HVA22 homologue D
arTal_v1_Chr3_-_4959704_4959704 0.28 AT3G14770.1
SWEET2
Nodulin MtN3 family protein
arTal_v1_Chr2_+_9386431_9386431 0.28 AT2G22080.1
AT2G22080
transmembrane protein
arTal_v1_Chr5_+_5206156_5206156 0.28 AT5G15950.2
AT5G15950
Adenosylmethionine decarboxylase family protein
arTal_v1_Chr3_+_7595680_7595680 0.28 AT3G21560.1
UGT84A2
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr4_-_7243228_7243228 0.28 AT4G12090.1
AT4G12090
Cornichon family protein
arTal_v1_Chr5_-_16995062_16995062 0.28 AT5G42500.1
AT5G42500
Disease resistance-responsive (dirigent-like protein) family protein
arTal_v1_Chr2_+_16083645_16083691 0.28 AT2G38400.1
AT2G38400.2
AGT3
alanine:glyoxylate aminotransferase 3
arTal_v1_Chr1_-_26716783_26716901 0.28 AT1G70850.3
AT1G70850.1
AT1G70850.2
MLP34
MLP-like protein 34
arTal_v1_Chr4_+_14333528_14333528 0.28 AT4G29090.1
AT4G29090
Ribonuclease H-like superfamily protein
arTal_v1_Chr1_+_16470872_16470872 0.28 AT1G43675.1
AT1G43675

arTal_v1_Chr3_-_5297851_5297851 0.28 AT3G15630.1
AT3G15630
plant/protein
arTal_v1_Chr1_-_21188369_21188369 0.28 AT1G56550.1
AT1G56550.2
RGXT3
RhamnoGalacturonan specific Xylosyltransferase 1
arTal_v1_Chr3_-_19453212_19453212 0.28 AT3G52480.1
AT3G52480
transmembrane protein
arTal_v1_Chr1_-_13456336_13456336 0.28 AT1G36060.1
AT1G36060
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr5_+_3536189_3536189 0.28 AT5G11110.1
SPS2F
sucrose phosphate synthase 2F
arTal_v1_Chr2_-_14677398_14677398 0.28 AT2G34790.1
MEE23
FAD-binding Berberine family protein
arTal_v1_Chr5_+_24386010_24386010 0.28 AT5G60680.1
AT5G60680
transcription initiation factor TFIID subunit (Protein of unknown function, DUF584)
arTal_v1_Chr1_+_9668508_9668601 0.27 AT1G27760.3
AT1G27760.1
AT1G27760.2
SAT32
interferon-related developmental regulator family protein / IFRD protein family
arTal_v1_Chr2_-_6920319_6920319 0.27 AT2G15880.1
AT2G15880
Leucine-rich repeat (LRR) family protein
arTal_v1_Chr4_+_10211577_10211577 0.27 AT4G18510.1
CLE2
CLAVATA3/ESR-related 2
arTal_v1_Chr5_-_2838188_2838214 0.27 AT5G08710.2
AT5G08710.1
RUG1
Regulator of chromosome condensation (RCC1) family protein
arTal_v1_Chr1_+_28829243_28829243 0.27 AT1G76800.1
AT1G76800
Vacuolar iron transporter (VIT) family protein
arTal_v1_Chr5_+_1192917_1192917 0.27 AT5G04280.5
AtRZ-1c
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
arTal_v1_Chr5_-_315405_315405 0.27 AT5G01820.1
SR1
serine/threonine protein kinase 1
arTal_v1_Chr2_-_19412328_19412328 0.27 AT2G47270.1
UPB1
transcription factor UPBEAT protein
arTal_v1_Chr3_+_9195334_9195334 0.27 AT3G25250.1
AGC2-1
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
arTal_v1_Chr4_+_17639_17784 0.27 AT4G00050.1
AT4G00050.3
AT4G00050.2
UNE10
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr2_-_10446434_10446434 0.27 AT2G24580.1
AT2G24580
FAD-dependent oxidoreductase family protein
arTal_v1_Chr2_-_6672731_6672731 0.27 AT2G15327.1
AT2G15327
hypothetical protein
arTal_v1_Chr1_+_8206549_8206549 0.27 AT1G23150.1
AT1G23150
hypothetical protein
arTal_v1_Chr3_-_16002163_16002163 0.27 AT3G44326.1
AT3G44326
F-box family protein
arTal_v1_Chr3_-_17902872_17902872 0.27 AT3G48344.1
AT3G48344
hypothetical protein
arTal_v1_Chr1_-_4228471_4228471 0.27 AT1G12420.2
ACR8
ACT domain repeat 8
arTal_v1_Chr5_-_22255663_22255663 0.27 AT5G54790.1
AT5G54790.2
AT5G54790
CTD small phosphatase-like protein
arTal_v1_Chr1_-_29459493_29459493 0.27 AT1G78290.2
AT1G78290.3
SNRK2-8
Protein kinase superfamily protein
arTal_v1_Chr2_-_8091736_8091736 0.27 AT2G18660.1
PNP-A
plant natriuretic peptide A
arTal_v1_Chr2_-_12415661_12415661 0.27 AT2G28900.1
OEP16-1
outer plastid envelope protein 16-1
arTal_v1_Chr3_-_1956397_1956397 0.27 AT3G06420.1
ATG8H
Ubiquitin-like superfamily protein
arTal_v1_Chr2_-_12228543_12228624 0.27 AT2G28550.6
AT2G28550.5
AT2G28550.4
AT2G28550.3
AT2G28550.1
AT2G28550.2
RAP2.7
related to AP2.7
arTal_v1_Chr2_-_19370478_19370478 0.26 AT2G47180.1
GolS1
galactinol synthase 1
arTal_v1_Chr5_+_24323371_24323371 0.26 AT5G60480.1
HB26
homeobox protein 26
arTal_v1_Chr2_-_7899242_7899242 0.26 AT2G18160.1
bZIP2
basic leucine-zipper 2
arTal_v1_Chr3_-_5670842_5670842 0.26 AT3G16640.1
TCTP
translationally controlled tumor protein
arTal_v1_Chr1_+_3777236_3777236 0.26 AT1G11260.1
STP1
sugar transporter 1
arTal_v1_Chr2_-_16493343_16493343 0.26 AT2G39510.1
UMAMIT14
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr1_+_21420244_21420244 0.26 AT1G57830.1
AT1G57830
Toll-Interleukin-Resistance (TIR) domain family protein
arTal_v1_Chr3_+_18465318_18465318 0.26 AT3G49780.1
PSK4
phytosulfokine 4 precursor
arTal_v1_Chr3_-_16926883_16926883 0.26 AT3G46090.1
ZAT7
C2H2 and C2HC zinc fingers superfamily protein
arTal_v1_Chr1_+_5828915_5828915 0.26 AT1G17050.1
SPS2
solanesyl diphosphate synthase 2
arTal_v1_Chr4_+_16921800_16921800 0.26 AT4G35690.1
AT4G35690
hypothetical protein (DUF241)
arTal_v1_Chr2_-_19207608_19207608 0.26 AT2G46740.1
GulLO5
D-arabinono-1,4-lactone oxidase family protein
arTal_v1_Chr1_-_2716532_2716532 0.26 AT1G08580.1
AT1G08580
hypothetical protein
arTal_v1_Chr5_+_1629610_1629610 0.26 AT5G05500.1
MOP10
Pollen Ole e 1 allergen and extensin family protein
arTal_v1_Chr5_+_26311311_26311311 0.26 AT5G65770.3
AT5G65780.2
LINC4
ATBCAT-5
little nuclei4
branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
arTal_v1_Chr2_+_16765920_16765920 0.26 AT2G40130.2
AT2G40130
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr5_+_22747478_22747478 0.26 AT5G56200.1
AT5G56200
C2H2 type zinc finger transcription factor family
arTal_v1_Chr5_-_14935885_14935885 0.26 AT5G37600.1
GSR 1
hypothetical protein
arTal_v1_Chr5_+_26634275_26634275 0.26 AT5G66700.1
HB53
homeobox 53
arTal_v1_Chr1_+_28163344_28163344 0.26 AT1G75000.1
AT1G75000
GNS1/SUR4 membrane protein family
arTal_v1_Chr5_+_6033484_6033484 0.26 AT5G18250.1
AT5G18250
transmembrane protein
arTal_v1_Chr5_-_20169923_20169923 0.26 AT5G49665.1
AT5G49665
Zinc finger (C3HC4-type RING finger) family protein
arTal_v1_Chr3_+_19825267_19825267 0.25 AT3G53480.1
ABCG37
pleiotropic drug resistance 9
arTal_v1_Chr2_+_19253670_19253670 0.25 AT2G46860.1
PPa3
pyrophosphorylase 3
arTal_v1_Chr5_+_19183523_19183571 0.25 AT5G47240.2
AT5G47240.1
NUDT8
nudix hydrolase homolog 8
arTal_v1_Chr5_+_16161449_16161449 0.25 AT5G40390.1
SIP1
Raffinose synthase family protein
arTal_v1_Chr1_+_10244453_10244453 0.25 AT1G29290.1
AT1G29290
B-cell lymphoma 6 protein
arTal_v1_Chr5_+_2355962_2355962 0.25 AT5G07440.3
GDH2
glutamate dehydrogenase 2
arTal_v1_Chr3_-_19747114_19747114 0.25 AT3G53260.1
PAL2
phenylalanine ammonia-lyase 2
arTal_v1_Chr5_+_18584676_18584676 0.25 AT5G45810.1
CIPK19
CBL-interacting protein kinase 19
arTal_v1_Chr5_-_26332812_26332812 0.25 AT5G65800.1
ACS5
ACC synthase 5
arTal_v1_Chr5_+_4335595_4335595 0.25 AT5G13490.2
AAC2
ADP/ATP carrier 2
arTal_v1_Chr5_+_4432297_4432306 0.25 AT5G13740.2
AT5G13740.1
ZIF1
zinc induced facilitator 1
arTal_v1_Chr4_+_6313914_6313914 0.25 AT4G10120.1
AT4G10120.3
ATSPS4F
Sucrose-phosphate synthase family protein
arTal_v1_Chr2_+_16765709_16765709 0.25 AT2G40130.1
AT2G40130
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr4_-_9393650_9393650 0.25 AT4G16690.1
MES16
methyl esterase 16
arTal_v1_Chr2_+_7606728_7606905 0.25 AT2G17500.2
AT2G17500.1
AT2G17500.3
AT2G17500.4
AT2G17500
Auxin efflux carrier family protein
arTal_v1_Chr1_-_9131779_9131779 0.25 AT1G26390.1
AT1G26390
FAD-binding Berberine family protein
arTal_v1_Chr1_+_26654768_26654768 0.25 AT1G70700.3
AT1G70700.2
TIFY7
TIFY domain/Divergent CCT motif family protein
arTal_v1_Chr4_+_6314755_6314774 0.25 AT4G10120.4
AT4G10120.2
ATSPS4F
Sucrose-phosphate synthase family protein
arTal_v1_Chr1_-_11561899_11561920 0.25 AT1G32130.1
AT1G32130.2
IWS1
Transcription elongation factor (TFIIS) family protein
arTal_v1_Chr1_-_1647147_1647147 0.25 AT1G05560.1
UGT75B1
UDP-glucosyltransferase 75B1
arTal_v1_Chr1_+_7818067_7818067 0.25 AT1G22150.2
AT1G22150.3
SULTR1%3B3
sulfate transporter 1;3
arTal_v1_Chr3_-_20015451_20015451 0.25 AT3G54040.1
AT3G54040
PAR1 protein
arTal_v1_Chr5_+_430858_430877 0.24 AT5G02180.1
AT5G02180.2
AT5G02180
Transmembrane amino acid transporter family protein
arTal_v1_Chr1_+_564018_564018 0.24 AT1G02640.1
BXL2
beta-xylosidase 2
arTal_v1_Chr4_-_16063070_16063251 0.24 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
arTal_v1_Chr2_-_14489767_14489767 0.24 AT2G34340.1
AT2G34340
senescence regulator (Protein of unknown function, DUF584)
arTal_v1_Chr1_+_27389948_27390022 0.24 AT1G72770.2
AT1G72770.1
AT1G72770.4
AT1G72770.5
AT1G72770.3
HAB1
HYPERSENSITIVE TO ABA1
arTal_v1_Chr1_+_28005264_28005264 0.24 AT1G74510.1
AT1G74510
Galactose oxidase/kelch repeat superfamily protein
arTal_v1_Chr1_+_4542168_4542168 0.24 AT1G13260.1
RAV1
related to ABI3/VP1 1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G29000

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0090547 response to low humidity(GO:0090547)
0.2 0.6 GO:0016540 protein autoprocessing(GO:0016540)
0.2 0.6 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.2 0.7 GO:0072351 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.1 0.5 GO:0097298 regulation of nucleus size(GO:0097298)
0.1 0.7 GO:0046825 regulation of protein export from nucleus(GO:0046825)
0.1 0.4 GO:0033530 raffinose metabolic process(GO:0033530)
0.1 0.5 GO:0010507 negative regulation of autophagy(GO:0010507)
0.1 0.4 GO:0010480 microsporocyte differentiation(GO:0010480)
0.1 0.3 GO:0019594 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.1 0.5 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.1 0.3 GO:0097438 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.1 0.4 GO:0043279 response to caffeine(GO:0031000) response to alkaloid(GO:0043279)
0.1 0.4 GO:0080065 4-alpha-methyl-delta7-sterol oxidation(GO:0080065)
0.1 0.4 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.1 0.3 GO:0080003 thalianol metabolic process(GO:0080003)
0.1 0.9 GO:0009608 response to symbiont(GO:0009608)
0.1 0.5 GO:0046482 para-aminobenzoic acid metabolic process(GO:0046482)
0.1 0.3 GO:1902475 L-alpha-amino acid transmembrane transport(GO:1902475)
0.1 1.0 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1 1.0 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 0.2 GO:0042908 xenobiotic transport(GO:0042908)
0.1 0.2 GO:0071763 nuclear membrane organization(GO:0071763)
0.1 0.1 GO:0048533 sporocyte differentiation(GO:0048533)
0.1 1.2 GO:0046341 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.1 0.2 GO:0019859 thymine catabolic process(GO:0006210) thymine metabolic process(GO:0019859)
0.1 0.1 GO:0007063 regulation of sister chromatid cohesion(GO:0007063)
0.1 0.2 GO:0071836 nectar secretion(GO:0071836)
0.1 0.2 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.1 0.4 GO:0010306 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.1 0.2 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.2 GO:0043471 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.1 0.3 GO:0009065 glutamine family amino acid catabolic process(GO:0009065)
0.1 0.3 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.1 0.4 GO:0032950 regulation of beta-glucan metabolic process(GO:0032950) regulation of beta-glucan biosynthetic process(GO:0032951) regulation of cellulose biosynthetic process(GO:2001006)
0.1 0.2 GO:0080040 positive regulation of cellular response to phosphate starvation(GO:0080040)
0.1 0.4 GO:0016045 detection of bacterium(GO:0016045)
0.1 0.2 GO:0070584 cell part morphogenesis(GO:0032990) mitochondrion morphogenesis(GO:0070584)
0.1 0.3 GO:0048464 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.1 0.2 GO:0019377 glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514)
0.1 0.3 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.0 0.4 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 0.1 GO:2000693 positive regulation of seed maturation(GO:2000693)
0.0 0.2 GO:0006654 phosphatidic acid biosynthetic process(GO:0006654)
0.0 0.1 GO:1990428 miRNA transport(GO:1990428)
0.0 0.3 GO:0044205 'de novo' UMP biosynthetic process(GO:0044205)
0.0 0.4 GO:1902025 nitrate import(GO:1902025)
0.0 0.2 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
0.0 0.2 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.0 0.2 GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity(GO:0043433)
0.0 1.7 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.0 0.4 GO:0097369 sodium ion transmembrane transport(GO:0035725) sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.0 0.1 GO:0015840 urea transport(GO:0015840)
0.0 0.1 GO:0090207 regulation of triglyceride metabolic process(GO:0090207)
0.0 0.4 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.8 GO:0010030 positive regulation of seed germination(GO:0010030)
0.0 0.2 GO:0071366 cellular response to indolebutyric acid stimulus(GO:0071366)
0.0 0.5 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.2 GO:0000393 spliceosomal conformational changes to generate catalytic conformation(GO:0000393)
0.0 0.1 GO:0014074 response to purine-containing compound(GO:0014074)
0.0 0.1 GO:0033120 positive regulation of RNA splicing(GO:0033120) positive regulation of mRNA processing(GO:0050685)
0.0 0.2 GO:0006651 diacylglycerol biosynthetic process(GO:0006651)
0.0 0.2 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.0 0.1 GO:0006808 regulation of nitrogen utilization(GO:0006808)
0.0 0.4 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.2 GO:0072718 response to cisplatin(GO:0072718)
0.0 0.3 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.0 0.7 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.2 GO:0043407 negative regulation of MAP kinase activity(GO:0043407) negative regulation of MAPK cascade(GO:0043409)
0.0 0.1 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.0 0.2 GO:0009245 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.0 0.6 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.1 GO:0032889 regulation of vacuole fusion, non-autophagic(GO:0032889) vacuole fusion, non-autophagic(GO:0042144)
0.0 0.4 GO:0015706 nitrate transport(GO:0015706)
0.0 0.1 GO:0030031 cell projection organization(GO:0030030) cell projection assembly(GO:0030031)
0.0 0.5 GO:0015865 purine nucleotide transport(GO:0015865)
0.0 0.1 GO:0060862 regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862)
0.0 0.3 GO:0044375 regulation of peroxisome size(GO:0044375)
0.0 0.2 GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072)
0.0 0.1 GO:0030100 regulation of endocytosis(GO:0030100)
0.0 0.1 GO:0044208 'de novo' AMP biosynthetic process(GO:0044208)
0.0 0.6 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.1 GO:0042817 pyridoxal metabolic process(GO:0042817) pyridine-containing compound catabolic process(GO:0072526)
0.0 0.2 GO:0006169 adenosine salvage(GO:0006169) adenosine biosynthetic process(GO:0046086)
0.0 0.4 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.3 GO:0071329 cellular response to sucrose stimulus(GO:0071329)
0.0 0.1 GO:0055089 fatty acid homeostasis(GO:0055089)
0.0 0.2 GO:0006624 vacuolar protein processing(GO:0006624)
0.0 0.1 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.0 0.2 GO:0006285 base-excision repair, AP site formation(GO:0006285)
0.0 0.3 GO:0010230 alternative respiration(GO:0010230)
0.0 0.4 GO:0055069 zinc ion homeostasis(GO:0055069)
0.0 0.4 GO:0019375 galactolipid biosynthetic process(GO:0019375)
0.0 0.4 GO:0015749 monosaccharide transport(GO:0015749)
0.0 0.9 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.1 GO:0090392 regulation of multicellular organism growth(GO:0040014) sepal giant cell differentiation(GO:0090392) regulation of adaxial/abaxial pattern formation(GO:2000011)
0.0 0.1 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.0 0.1 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.0 0.1 GO:0060145 viral gene silencing in virus induced gene silencing(GO:0060145)
0.0 0.1 GO:0031441 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.0 0.3 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.0 0.1 GO:0006427 histidyl-tRNA aminoacylation(GO:0006427)
0.0 0.1 GO:1902065 response to L-glutamate(GO:1902065)
0.0 0.1 GO:0006421 asparaginyl-tRNA aminoacylation(GO:0006421)
0.0 0.2 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.7 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.1 GO:0010226 response to lithium ion(GO:0010226)
0.0 0.0 GO:0035865 response to potassium ion(GO:0035864) cellular response to potassium ion(GO:0035865)
0.0 0.2 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.0 0.2 GO:0080143 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.0 0.1 GO:0000965 mitochondrial RNA 3'-end processing(GO:0000965)
0.0 0.7 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.2 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.0 0.2 GO:0050898 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.0 0.0 GO:0006498 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377)
0.0 0.3 GO:0048766 root hair initiation(GO:0048766)
0.0 0.1 GO:0070509 calcium ion import(GO:0070509)
0.0 0.1 GO:0032000 positive regulation of fatty acid beta-oxidation(GO:0032000) positive regulation of lipid catabolic process(GO:0050996)
0.0 0.1 GO:0070922 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.0 0.2 GO:0006656 phosphatidylcholine biosynthetic process(GO:0006656)
0.0 0.1 GO:0034035 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.0 0.2 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 0.1 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.0 0.1 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.2 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.1 GO:0051095 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 0.1 GO:0003400 regulation of COPII vesicle coating(GO:0003400) regulation of ER to Golgi vesicle-mediated transport by GTP hydrolysis(GO:0090113)
0.0 0.1 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.1 GO:0010255 glucose mediated signaling pathway(GO:0010255)
0.0 0.3 GO:0009704 de-etiolation(GO:0009704)
0.0 0.1 GO:0009187 cyclic nucleotide metabolic process(GO:0009187)
0.0 0.1 GO:0050792 regulation of symbiosis, encompassing mutualism through parasitism(GO:0043903) regulation of viral process(GO:0050792)
0.0 0.1 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.0 0.2 GO:0050879 circumnutation(GO:0010031) multicellular organismal movement(GO:0050879)
0.0 0.1 GO:0051775 response to redox state(GO:0051775)
0.0 0.2 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.0 0.2 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.0 0.1 GO:0005980 glycogen catabolic process(GO:0005980)
0.0 0.1 GO:0046835 carbohydrate phosphorylation(GO:0046835) inositol phosphorylation(GO:0052746)
0.0 0.1 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 1.0 GO:0072350 tricarboxylic acid metabolic process(GO:0072350)
0.0 0.1 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.0 0.2 GO:0016973 poly(A)+ mRNA export from nucleus(GO:0016973)
0.0 0.3 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.0 0.1 GO:0032979 protein insertion into membrane from inner side(GO:0032978) protein insertion into mitochondrial membrane from inner side(GO:0032979) protein insertion into mitochondrial membrane(GO:0051204)
0.0 0.1 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 0.2 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.1 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.0 0.2 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.0 0.1 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.1 GO:0015739 sialic acid transport(GO:0015739)
0.0 0.0 GO:0098532 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.0 0.3 GO:0046885 regulation of hormone biosynthetic process(GO:0046885)
0.0 0.0 GO:0009915 phloem sucrose loading(GO:0009915)
0.0 0.2 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.0 0.1 GO:0006552 leucine catabolic process(GO:0006552)
0.0 0.6 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.0 GO:0071421 manganese ion transmembrane transport(GO:0071421)
0.0 0.1 GO:1901001 negative regulation of response to salt stress(GO:1901001)
0.0 0.0 GO:0015696 ammonium transport(GO:0015696)
0.0 0.8 GO:0010114 response to red light(GO:0010114)
0.0 0.3 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.1 GO:0048830 adventitious root development(GO:0048830)
0.0 0.2 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.2 GO:1902074 response to salt(GO:1902074)
0.0 0.7 GO:0006885 regulation of pH(GO:0006885)
0.0 0.1 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.0 0.2 GO:0016577 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.0 0.0 GO:0010269 response to selenium ion(GO:0010269)
0.0 0.1 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.0 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.0 0.2 GO:0006949 syncytium formation(GO:0006949)
0.0 0.1 GO:0080165 callose deposition in phloem sieve plate(GO:0080165)
0.0 0.1 GO:0010262 somatic embryogenesis(GO:0010262)
0.0 0.1 GO:0036065 fucosylation(GO:0036065)
0.0 0.4 GO:0000723 telomere maintenance(GO:0000723) telomere organization(GO:0032200)
0.0 0.1 GO:0045995 regulation of embryonic development(GO:0045995)
0.0 0.0 GO:0015697 quaternary ammonium group transport(GO:0015697)
0.0 0.0 GO:0033506 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.0 0.1 GO:0051103 DNA ligation involved in DNA repair(GO:0051103)
0.0 0.3 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.0 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.0 0.7 GO:0048545 brassinosteroid mediated signaling pathway(GO:0009742) steroid hormone mediated signaling pathway(GO:0043401) response to steroid hormone(GO:0048545) cellular response to steroid hormone stimulus(GO:0071383)
0.0 0.2 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0005652 nuclear lamina(GO:0005652)
0.1 0.6 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.1 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.0 0.2 GO:0071012 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.0 0.2 GO:0031931 TORC1 complex(GO:0031931) TOR complex(GO:0038201)
0.0 0.1 GO:0030677 ribonuclease P complex(GO:0030677)
0.0 0.2 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.0 0.6 GO:0000781 chromosome, telomeric region(GO:0000781)
0.0 0.1 GO:0071818 BAT3 complex(GO:0071818)
0.0 0.1 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.0 0.4 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.2 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.0 0.3 GO:0030686 90S preribosome(GO:0030686)
0.0 0.2 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.1 GO:0097344 Rix1 complex(GO:0097344)
0.0 0.1 GO:0031907 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.2 GO:0043189 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.1 GO:0000813 ESCRT I complex(GO:0000813)
0.0 0.0 GO:0034274 Atg12-Atg5-Atg16 complex(GO:0034274)
0.0 0.1 GO:0000445 transcription export complex(GO:0000346) THO complex part of transcription export complex(GO:0000445)
0.0 0.2 GO:0005769 early endosome(GO:0005769)
0.0 0.2 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.1 GO:0032807 DNA ligase IV complex(GO:0032807)
0.0 0.0 GO:0060293 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.0 0.9 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 0.1 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.2 GO:0034399 nuclear periphery(GO:0034399)
0.0 0.3 GO:0031012 extracellular matrix(GO:0031012)
0.0 0.1 GO:0055038 recycling endosome membrane(GO:0055038)
0.0 0.4 GO:1903293 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 0.2 GO:0031965 nuclear membrane(GO:0031965)
0.0 0.3 GO:0046540 U4/U6 x U5 tri-snRNP complex(GO:0046540)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.2 0.8 GO:0050284 sinapate 1-glucosyltransferase activity(GO:0050284)
0.2 0.7 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.2 0.7 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.2 1.4 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.2 0.8 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.2 0.5 GO:0004353 glutamate dehydrogenase [NAD(P)+] activity(GO:0004353)
0.2 0.6 GO:0048030 disaccharide binding(GO:0048030) maltose binding(GO:1901982)
0.2 0.5 GO:0008798 beta-aspartyl-peptidase activity(GO:0008798)
0.1 0.7 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.1 1.2 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.1 0.5 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.4 GO:0004557 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 0.5 GO:0080002 indole-3-acetate beta-glucosyltransferase activity(GO:0047215) UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002)
0.1 0.3 GO:0000234 phosphoethanolamine N-methyltransferase activity(GO:0000234)
0.1 0.4 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 0.6 GO:0019904 protein domain specific binding(GO:0019904)
0.1 0.7 GO:0005049 nuclear export signal receptor activity(GO:0005049)
0.1 0.4 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.1 0.4 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 0.4 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.1 0.3 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.1 0.6 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 0.2 GO:0046524 sucrose-phosphate synthase activity(GO:0046524)
0.1 0.5 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.1 0.2 GO:0016041 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.1 0.3 GO:0004307 ethanolaminephosphotransferase activity(GO:0004307)
0.1 0.2 GO:0008517 folic acid transporter activity(GO:0008517)
0.1 0.3 GO:0008301 DNA binding, bending(GO:0008301)
0.1 0.4 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
0.1 0.4 GO:0030527 structural constituent of chromatin(GO:0030527)
0.1 0.7 GO:0016161 beta-amylase activity(GO:0016161)
0.1 0.3 GO:0052924 trans-octaprenyltranstransferase activity(GO:0050347) all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity(GO:0052924)
0.1 0.3 GO:0046509 1,2-diacylglycerol 3-beta-galactosyltransferase activity(GO:0046509)
0.1 0.5 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1 0.3 GO:0052656 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.1 0.4 GO:0045431 flavonol synthase activity(GO:0045431)
0.1 0.4 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.6 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 0.2 GO:0004348 glucosylceramidase activity(GO:0004348)
0.1 0.2 GO:0047874 dolichyldiphosphatase activity(GO:0047874)
0.0 0.2 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.0 0.5 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.1 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0 0.5 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.0 0.2 GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.0 0.1 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.0 0.2 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.0 1.0 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.7 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.0 0.2 GO:0004385 guanylate kinase activity(GO:0004385)
0.0 0.1 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.0 0.3 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.0 0.1 GO:0043812 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812) phosphatidylinositol monophosphate phosphatase activity(GO:0052744)
0.0 0.6 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.1 GO:0010280 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.0 0.6 GO:0004575 sucrose alpha-glucosidase activity(GO:0004575)
0.0 0.1 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.0 0.2 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.0 0.5 GO:0035529 NADH pyrophosphatase activity(GO:0035529)
0.0 0.3 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.0 0.3 GO:0004356 glutamate-ammonia ligase activity(GO:0004356)
0.0 0.3 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.0 0.1 GO:0051980 iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980)
0.0 0.3 GO:0016647 oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor(GO:0016647)
0.0 0.4 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.0 0.1 GO:0004113 cyclic-nucleotide phosphodiesterase activity(GO:0004112) 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity(GO:0004113)
0.0 0.3 GO:0035198 miRNA binding(GO:0035198)
0.0 0.2 GO:0004645 phosphorylase activity(GO:0004645)
0.0 0.2 GO:0008430 selenium binding(GO:0008430)
0.0 0.1 GO:0016842 amidine-lyase activity(GO:0016842)
0.0 0.2 GO:0004001 adenosine kinase activity(GO:0004001)
0.0 0.0 GO:0004352 glutamate dehydrogenase (NAD+) activity(GO:0004352)
0.0 0.1 GO:0015245 fatty acid transporter activity(GO:0015245)
0.0 0.4 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.1 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.0 0.1 GO:0015292 uniporter activity(GO:0015292)
0.0 0.4 GO:0045551 cinnamyl-alcohol dehydrogenase activity(GO:0045551)
0.0 0.2 GO:0003994 aconitate hydratase activity(GO:0003994)
0.0 0.2 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.1 GO:0080107 8-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080107)
0.0 0.6 GO:0022821 potassium ion antiporter activity(GO:0022821)
0.0 0.1 GO:0015185 gamma-aminobutyric acid transmembrane transporter activity(GO:0015185)
0.0 0.1 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.0 0.1 GO:0016463 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.0 0.2 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 0.5 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.0 0.2 GO:0004970 ionotropic glutamate receptor activity(GO:0004970) extracellular ligand-gated ion channel activity(GO:0005230) transmitter-gated ion channel activity(GO:0022824) transmitter-gated channel activity(GO:0022835) neurotransmitter receptor activity(GO:0030594)
0.0 0.1 GO:0004821 histidine-tRNA ligase activity(GO:0004821)
0.0 0.5 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.1 GO:0004816 asparagine-tRNA ligase activity(GO:0004816)
0.0 0.1 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 0.2 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.0 0.2 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.1 GO:0070402 NADPH binding(GO:0070402)
0.0 0.1 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.0 0.6 GO:0010427 abscisic acid binding(GO:0010427)
0.0 0.2 GO:0015086 cadmium ion transmembrane transporter activity(GO:0015086)
0.0 0.0 GO:0008519 ammonium transmembrane transporter activity(GO:0008519)
0.0 0.1 GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.0 0.1 GO:0008728 GTP diphosphokinase activity(GO:0008728) palmitoyl hydrolase activity(GO:0098599)
0.0 0.2 GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor(GO:0016635)
0.0 0.1 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.0 0.1 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.0 0.7 GO:0016597 amino acid binding(GO:0016597)
0.0 0.5 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.0 0.1 GO:0015368 calcium:cation antiporter activity(GO:0015368)
0.0 0.4 GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645)
0.0 0.4 GO:0051119 sugar transmembrane transporter activity(GO:0051119)
0.0 0.1 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.0 GO:0019776 Atg8 ligase activity(GO:0019776)
0.0 0.7 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.1 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.0 0.1 GO:0070182 DNA polymerase binding(GO:0070182)
0.0 0.1 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.1 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.5 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.2 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 0.7 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.1 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.0 0.0 GO:0031210 phosphatidylcholine binding(GO:0031210) quaternary ammonium group binding(GO:0050997)
0.0 0.0 GO:0004071 aspartate-ammonia ligase activity(GO:0004071)
0.0 0.1 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.0 GO:0035671 enone reductase activity(GO:0035671)
0.0 0.1 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 0.1 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.0 0.1 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.9 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 0.3 GO:0060090 binding, bridging(GO:0060090)
0.0 0.3 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.1 GO:0004096 catalase activity(GO:0004096)
0.0 0.2 GO:0016018 cyclosporin A binding(GO:0016018)
0.0 0.1 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.1 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.1 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.0 0.1 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.0 GO:0005247 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.0 0.2 GO:0008139 nuclear localization sequence binding(GO:0008139)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 PID S1P S1P1 PATHWAY S1P1 pathway
0.1 0.4 PID ECADHERIN NASCENT AJ PATHWAY E-cadherin signaling in the nascent adherens junction
0.0 0.2 PID RAC1 PATHWAY RAC1 signaling pathway
0.0 0.1 PID HDAC CLASSII PATHWAY Signaling events mediated by HDAC Class II

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.1 0.2 REACTOME HDL MEDIATED LIPID TRANSPORT Genes involved in HDL-mediated lipid transport
0.1 0.2 REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION Genes involved in Apoptosis induced DNA fragmentation
0.1 0.3 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides
0.1 0.6 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.1 0.2 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.0 0.3 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.1 REACTOME METABOLISM OF VITAMINS AND COFACTORS Genes involved in Metabolism of vitamins and cofactors
0.0 0.1 REACTOME GENERIC TRANSCRIPTION PATHWAY Genes involved in Generic Transcription Pathway
0.0 0.0 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.0 0.1 REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS Genes involved in Glycerophospholipid biosynthesis