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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G39610
Z-value: 0.80
Transcription factors associated with AT5G39610
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G39610
|
AT5G39610 | NAC domain containing protein 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC6 | arTal_v1_Chr5_-_15859911_15859911 | -0.38 | 1.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 1.07 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.05 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.05 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr2_+_15859204_15859204 Show fit | 1.01 |
AT2G37870.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_17008528_17008528 Show fit | 1.01 |
AT3G46280.1
|
kinase-like protein |
|
| arTal_v1_Chr2_-_16780368_16780368 Show fit | 1.00 |
AT2G40170.1
|
Stress induced protein |
|
| arTal_v1_Chr2_+_17854557_17854557 Show fit | 0.96 |
AT2G42900.1
|
Plant basic secretory protein (BSP) family protein |
|
| arTal_v1_Chr2_-_14541617_14541617 Show fit | 0.92 |
AT2G34500.1
|
cytochrome P450, family 710, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr5_-_3517035_3517035 Show fit | 0.87 |
AT5G11070.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_3059148_3059244 Show fit | 0.84 |
AT3G09940.2
AT3G09940.1 |
monodehydroascorbate reductase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G39610
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.0 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.0 | 1.8 | GO:0009627 | systemic acquired resistance(GO:0009627) |
| 0.0 | 1.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.3 | GO:0045493 | xylan catabolic process(GO:0045493) |
| 0.0 | 1.1 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 0.9 | GO:0045491 | xylan metabolic process(GO:0045491) |
| 0.3 | 0.8 | GO:0033528 | S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528) |
| 0.0 | 0.8 | GO:0060688 | regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032) |
| 0.0 | 0.8 | GO:0010082 | regulation of root meristem growth(GO:0010082) |
| 0.0 | 0.8 | GO:0006906 | vesicle fusion(GO:0006906) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 1.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 0.8 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 0.7 | GO:0005784 | Sec61 translocon complex(GO:0005784) |
| 0.2 | 0.6 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
| 0.0 | 0.6 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.6 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.0 | 0.6 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.1 | 0.5 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.0 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.0 | 1.8 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.3 | 1.6 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.1 | 1.5 | GO:0004708 | MAP kinase kinase activity(GO:0004708) |
| 0.0 | 1.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 1.2 | GO:0018685 | alkane 1-monooxygenase activity(GO:0018685) |
| 0.0 | 1.1 | GO:0008320 | protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884) |
| 0.1 | 1.0 | GO:0005504 | fatty acid binding(GO:0005504) |
| 0.1 | 1.0 | GO:1900750 | glutathione binding(GO:0043295) oligopeptide binding(GO:1900750) |
| 0.3 | 0.9 | GO:0000249 | C-22 sterol desaturase activity(GO:0000249) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.2 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.0 | 0.1 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.4 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |