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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G44210
Z-value: 0.18
Transcription factors associated with AT5G44210
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G44210
|
AT5G44210 | erf domain protein 9 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF9 | arTal_v1_Chr5_+_17806397_17806397 | 0.61 | 2.0e-02 | Click! |
Activity profile of AT5G44210 motif
Sorted Z-values of AT5G44210 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_5741500_5741500 | 0.18 |
AT5G17420.1
|
IRX3
|
Cellulose synthase family protein |
| arTal_v1_Chr2_-_15589369_15589369 | 0.15 |
AT2G37090.1
|
IRX9
|
Nucleotide-diphospho-sugar transferases superfamily protein |
| arTal_v1_Chr2_-_12996012_12996012 | 0.12 |
AT2G30490.1
|
C4H
|
cinnamate-4-hydroxylase |
| arTal_v1_Chr1_+_3111694_3111694 | 0.11 |
AT1G09610.1
|
GXM3
|
glucuronoxylan 4-O-methyltransferase-like protein (DUF579) |
| arTal_v1_Chr5_+_17714390_17714390 | 0.10 |
AT5G44030.2
AT5G44030.1 |
CESA4
|
cellulose synthase A4 |
| arTal_v1_Chr5_+_5084524_5084695 | 0.10 |
AT5G15630.1
AT5G15630.2 AT5G15630.3 AT5G15630.4 AT5G15630.5 |
IRX6
|
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family |
| arTal_v1_Chr5_+_17715687_17715687 | 0.06 |
AT5G44030.3
|
CESA4
|
cellulose synthase A4 |
| arTal_v1_Chr3_+_3203988_3203988 | 0.06 |
AT3G10340.1
|
PAL4
|
phenylalanine ammonia-lyase 4 |
| arTal_v1_Chr1_+_22836327_22836327 | 0.01 |
AT1G61820.3
|
BGLU46
|
beta glucosidase 46 |
| arTal_v1_Chr3_-_2578276_2578276 | 0.00 |
AT3G08500.1
|
MYB83
|
myb domain protein 83 |
| arTal_v1_Chr1_+_6177481_6177481 | 0.00 |
AT1G17950.1
|
MYB52
|
myb domain protein 52 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G44210
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0010395 | rhamnogalacturonan I metabolic process(GO:0010395) |
| 0.0 | 0.1 | GO:0010417 | glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0010330 | cellulose synthase complex(GO:0010330) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0047517 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517) |
| 0.0 | 0.1 | GO:0045548 | phenylalanine ammonia-lyase activity(GO:0045548) |
| 0.0 | 0.3 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |