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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G47390
Z-value: 1.07
Transcription factors associated with AT5G47390
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G47390
|
AT5G47390 | myb-like transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G47390 | arTal_v1_Chr5_+_19226769_19226769 | 0.64 | 1.3e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 1.42 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr3_-_18375784_18375784 Show fit | 1.37 |
AT3G49580.3
AT3G49580.2 |
response to low sulfur 1 |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 1.37 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr3_-_18375940_18375940 Show fit | 1.34 |
AT3G49580.1
|
response to low sulfur 1 |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 1.33 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr1_+_8544248_8544308 Show fit | 1.30 |
AT1G24148.1
AT1G24148.2 |
hypothetical protein |
|
| arTal_v1_Chr5_+_8436352_8436352 Show fit | 1.28 |
AT5G24640.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_28251626_28251626 Show fit | 1.27 |
AT1G75280.1
|
NmrA-like negative transcriptional regulator family protein |
|
| arTal_v1_Chr5_-_19807853_19807853 Show fit | 1.27 |
AT5G48850.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr5_+_6566271_6566303 Show fit | 1.25 |
AT5G19470.1
AT5G19470.2 |
nudix hydrolase homolog 24 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G47390
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.9 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) |
| 0.6 | 4.2 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.0 | 4.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 3.5 | GO:0090056 | regulation of chlorophyll metabolic process(GO:0090056) |
| 0.1 | 3.5 | GO:0009817 | defense response to fungus, incompatible interaction(GO:0009817) |
| 0.2 | 3.4 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.1 | 3.2 | GO:0035304 | regulation of protein dephosphorylation(GO:0035304) |
| 0.1 | 3.0 | GO:0005983 | starch catabolic process(GO:0005983) |
| 0.1 | 2.9 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 2.8 | GO:0015976 | carbon utilization(GO:0015976) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.4 | GO:0055035 | plastid thylakoid membrane(GO:0055035) |
| 0.0 | 6.6 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 4.1 | GO:0010319 | stromule(GO:0010319) |
| 0.2 | 3.8 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.1 | 3.4 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 2.6 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 2.6 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 2.0 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.0 | 2.0 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.1 | 1.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.0 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 4.9 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.1 | 4.5 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 4.5 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 4.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 3.8 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.3 | 3.5 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.0 | 3.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.4 | 3.1 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.2 | 2.6 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.7 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.6 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 0.4 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.1 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 1.3 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 1.0 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.2 | 0.8 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.6 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
| 0.1 | 0.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 0.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.2 | 0.5 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.4 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
| 0.1 | 0.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |