Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT5G54680

Z-value: 0.39

Transcription factors associated with AT5G54680

Gene Symbol Gene ID Gene Info
AT5G54680
AT5G54680 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ILR3arTal_v1_Chr5_+_22216934_222169340.371.9e-01Click!

Activity profile of AT5G54680 motif

Sorted Z-values of AT5G54680 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr5_-_5741500_5741500 0.43 AT5G17420.1
IRX3
Cellulose synthase family protein
arTal_v1_Chr5_+_24167996_24168072 0.41 AT5G60020.1
AT5G60020.2
LAC17
laccase 17
arTal_v1_Chr4_-_10316886_10316886 0.38 AT4G18780.1
IRX1
cellulose synthase family protein
arTal_v1_Chr2_-_15589369_15589369 0.34 AT2G37090.1
IRX9
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr4_-_16063070_16063251 0.32 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
arTal_v1_Chr2_-_17060652_17060652 0.30 AT2G40890.1
CYP98A3
cytochrome P450, family 98, subfamily A, polypeptide 3
arTal_v1_Chr5_+_24168245_24168245 0.28 AT5G60020.3
LAC17
laccase 17
arTal_v1_Chr5_+_5084524_5084695 0.27 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
arTal_v1_Chr2_-_12996012_12996012 0.25 AT2G30490.1
C4H
cinnamate-4-hydroxylase
arTal_v1_Chr1_-_9531489_9531489 0.21 AT1G27440.1
GUT2
Exostosin family protein
arTal_v1_Chr5_+_17714390_17714390 0.21 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
arTal_v1_Chr1_-_9510263_9510269 0.12 AT1G27380.1
AT1G27380.3
AT1G27380.4
RIC2
ROP-interactive CRIB motif-containing protein 2
arTal_v1_Chr5_+_17715687_17715687 0.10 AT5G44030.3
CESA4
cellulose synthase A4
arTal_v1_Chr3_-_8217080_8217206 0.10 AT3G23090.1
AT3G23090.2
AT3G23090.4
AT3G23090.3
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
arTal_v1_Chr3_+_6744377_6744377 0.10 AT3G19450.1
ATCAD4
GroES-like zinc-binding alcohol dehydrogenase family protein
arTal_v1_Chr5_-_24422274_24422274 0.08 AT5G60720.1
AT5G60720
electron transporter, putative (Protein of unknown function, DUF547)
arTal_v1_Chr5_+_25050679_25050679 0.07 AT5G62380.2
NAC101
NAC-domain protein 101
arTal_v1_Chr1_+_23337167_23337167 0.06 AT1G62990.1
KNAT7
homeobox knotted-like protein
arTal_v1_Chr5_+_25050152_25050152 0.05 AT5G62380.1
NAC101
NAC-domain protein 101
arTal_v1_Chr3_-_8216305_8216305 0.05 AT3G23090.5
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
arTal_v1_Chr5_-_19838235_19838235 0.04 AT5G48930.1
HCT
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
arTal_v1_Chr3_-_2578276_2578276 0.03 AT3G08500.1
MYB83
myb domain protein 83
arTal_v1_Chr1_-_9510066_9510066 0.02 AT1G27380.2
RIC2
ROP-interactive CRIB motif-containing protein 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G54680

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.4 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.1 0.4 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.1 0.9 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.1 GO:0090058 metaxylem development(GO:0090058)
0.0 0.3 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.0 0.3 GO:0006744 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.0 0.3 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0010330 cellulose synthase complex(GO:0010330)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.3 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 0.6 GO:0047517 1,4-beta-D-xylan synthase activity(GO:0047517)
0.1 0.3 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.0 1.1 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.7 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)