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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT5G56840

Z-value: 2.97

Transcription factors associated with AT5G56840

Gene Symbol Gene ID Gene Info
AT5G56840
AT5G56840 myb-like transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT5G56840arTal_v1_Chr5_+_22980638_22980638-0.156.0e-01Click!

Activity profile of AT5G56840 motif

Sorted Z-values of AT5G56840 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr4_+_9698940_9698940 5.44 AT4G17340.1
TIP2%3B2
tonoplast intrinsic protein 2;2
arTal_v1_Chr5_+_6833564_6833659 5.38 AT5G20250.2
AT5G20250.1
AT5G20250.4
AT5G20250.3
DIN10
Raffinose synthase family protein
arTal_v1_Chr4_+_6826587_6826587 5.13 AT4G11190.1
AT4G11190
Disease resistance-responsive (dirigent-like protein) family protein
arTal_v1_Chr4_-_14827211_14827211 4.71 AT4G30280.1
XTH18
xyloglucan endotransglucosylase/hydrolase 18
arTal_v1_Chr1_-_4975705_4975705 4.37 AT1G14540.1
PER4
Peroxidase superfamily protein
arTal_v1_Chr5_-_19036938_19036938 4.17 AT5G46890.1
AT5G46890
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr1_-_7391603_7391603 3.93 AT1G21110.1
IGMT3
O-methyltransferase family protein
arTal_v1_Chr5_-_19040456_19040456 3.61 AT5G46900.1
AT5G46900
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr5_-_15378416_15378416 3.58 AT5G38410.3
AT5G38410.2
RBCS3B
Ribulose bisphosphate carboxylase (small chain) family protein
arTal_v1_Chr3_+_20354351_20354351 3.58 AT3G54940.3
AT3G54940.2
AT3G54940
Papain family cysteine protease
arTal_v1_Chr5_-_15378642_15378642 3.58 AT5G38410.1
RBCS3B
Ribulose bisphosphate carboxylase (small chain) family protein
arTal_v1_Chr1_-_7388512_7388512 3.28 AT1G21100.1
IGMT1
O-methyltransferase family protein
arTal_v1_Chr3_-_2130451_2130451 3.20 AT3G06750.1
AT3G06750
hydroxyproline-rich glycoprotein family protein
arTal_v1_Chr2_-_8533779_8533779 3.16 AT2G19800.1
MIOX2
myo-inositol oxygenase 2
arTal_v1_Chr4_-_14002069_14002124 3.06 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
EXPB3
expansin B3
arTal_v1_Chr5_+_19183523_19183571 3.00 AT5G47240.2
AT5G47240.1
NUDT8
nudix hydrolase homolog 8
arTal_v1_Chr5_+_26266180_26266266 2.94 AT5G65690.1
AT5G65690.2
AT5G65690.3
AT5G65690.4
PCK2
phosphoenolpyruvate carboxykinase 2
arTal_v1_Chr4_-_17672353_17672353 2.90 AT4G37610.1
BT5
BTB and TAZ domain protein 5
arTal_v1_Chr1_-_20458631_20458631 2.85 AT1G54860.1
AT1G54860
Glycoprotein membrane precursor GPI-anchored
arTal_v1_Chr2_-_151971_151971 2.81 AT2G01300.1
AT2G01300
mediator of RNA polymerase II transcription subunit
arTal_v1_Chr3_+_18465318_18465318 2.77 AT3G49780.1
PSK4
phytosulfokine 4 precursor
arTal_v1_Chr5_-_4664681_4664681 2.75 AT5G14470.1
AT5G14470
GHMP kinase family protein
arTal_v1_Chr2_-_7768040_7768040 2.75 AT2G17880.1
AT2G17880
Chaperone DnaJ-domain superfamily protein
arTal_v1_Chr5_-_3517035_3517035 2.74 AT5G11070.1
AT5G11070
hypothetical protein
arTal_v1_Chr5_+_84474_84474 2.73 AT5G01210.1
AT5G01210
HXXXD-type acyl-transferase family protein
arTal_v1_Chr5_+_25033471_25033471 2.70 AT5G62340.1
AT5G62340
Plant invertase/pectin methylesterase inhibitor superfamily protein
arTal_v1_Chr3_-_21293158_21293171 2.70 AT3G57520.2
AT3G57520.3
AT3G57520.1
SIP2
seed imbibition 2
arTal_v1_Chr3_-_7656053_7656053 2.67 AT3G21720.1
ICL
isocitrate lyase
arTal_v1_Chr5_-_216773_216773 2.65 AT5G01550.1
LECRKA4.2
lectin receptor kinase a4.1
arTal_v1_Chr1_-_23137254_23137254 2.64 AT1G62510.1
AT1G62510
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr1_-_12617032_12617032 2.64 AT1G34510.1
AT1G34510
Peroxidase superfamily protein
arTal_v1_Chr5_+_24707445_24707445 2.63 AT5G61440.2
AT5G61440.1
ACHT5
atypical CYS HIS rich thioredoxin 5
arTal_v1_Chr4_+_9051871_9051871 2.62 AT4G15975.1
AT4G15975
RING/U-box superfamily protein
arTal_v1_Chr4_-_5648727_5648868 2.61 AT4G08870.2
AT4G08870.1
ARGAH2
Arginase/deacetylase superfamily protein
arTal_v1_Chr1_-_16838562_16838562 2.61 AT1G44350.1
ILL6
IAA-amino acid hydrolase ILR1-like 6
arTal_v1_Chr5_+_4488476_4488476 2.60 AT5G13930.1
TT4
Chalcone and stilbene synthase family protein
arTal_v1_Chr5_-_23308680_23308680 2.59 AT5G57560.1
TCH4
Xyloglucan endotransglucosylase/hydrolase family protein
arTal_v1_Chr1_+_23128651_23128651 2.58 AT1G62480.1
AT1G62480
Vacuolar calcium-binding protein-like protein
arTal_v1_Chr1_-_28233134_28233134 2.57 AT1G75220.1
ERDL6
Major facilitator superfamily protein
arTal_v1_Chr5_+_16301072_16301072 2.54 AT5G40730.1
AGP24
arabinogalactan protein 24
arTal_v1_Chr1_-_5181374_5181402 2.52 AT1G15040.2
AT1G15040.1
GAT1_2.1
Class I glutamine amidotransferase-like superfamily protein
arTal_v1_Chr5_-_15382071_15382071 2.51 AT5G38420.1
RBCS2B
Ribulose bisphosphate carboxylase (small chain) family protein
arTal_v1_Chr5_+_26573964_26573964 2.51 AT5G66590.1
AT5G66590
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
arTal_v1_Chr3_+_9480746_9480839 2.50 AT3G25900.1
AT3G25900.3
AT3G25900.2
HMT-1
Homocysteine S-methyltransferase family protein
arTal_v1_Chr3_+_22142856_22142856 2.50 AT3G59940.1
AT3G59940
Galactose oxidase/kelch repeat superfamily protein
arTal_v1_Chr3_-_8064649_8064649 2.49 AT3G22800.1
AT3G22800
Leucine-rich repeat (LRR) family protein
arTal_v1_Chr3_+_23266227_23266227 2.49 AT3G62950.1
AT3G62950
Thioredoxin superfamily protein
arTal_v1_Chr1_+_28746833_28746833 2.47 AT1G76600.1
AT1G76600
poly polymerase
arTal_v1_Chr4_-_16168711_16168711 2.46 AT4G33660.1
AT4G33660
cysteine-rich TM module stress tolerance protein
arTal_v1_Chr2_+_15706285_15706285 2.46 AT2G37430.1
ZAT11
C2H2 and C2HC zinc fingers superfamily protein
arTal_v1_Chr2_-_16359943_16359943 2.45 AT2G39200.1
MLO12
Seven transmembrane MLO family protein
arTal_v1_Chr2_+_12589866_12590058 2.45 AT2G29310.3
AT2G29310.1
AT2G29310.2
AT2G29310.4
AT2G29310
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr1_-_9649323_9649323 2.45 AT1G27730.1
STZ
salt tolerance zinc finger
arTal_v1_Chr3_+_3442237_3442237 2.44 AT3G10985.1
SAG20
senescence associated gene 20
arTal_v1_Chr3_-_5297851_5297851 2.43 AT3G15630.1
AT3G15630
plant/protein
arTal_v1_Chr1_-_25580194_25580199 2.43 AT1G68250.2
AT1G68250.1
AT1G68250
hypothetical protein
arTal_v1_Chr5_+_6414488_6414488 2.40 AT5G19120.1
AT5G19120
Eukaryotic aspartyl protease family protein
arTal_v1_Chr5_-_17831336_17831336 2.40 AT5G44260.1
AT5G44260
Zinc finger C-x8-C-x5-C-x3-H type family protein
arTal_v1_Chr4_-_12886695_12886740 2.39 AT4G25100.1
AT4G25100.3
AT4G25100.4
FSD1
Fe superoxide dismutase 1
arTal_v1_Chr1_+_17123785_17123821 2.37 AT1G45201.3
AT1G45201.1
AT1G45201.2
TLL1
triacylglycerol lipase-like 1
arTal_v1_Chr1_-_5129523_5129523 2.36 AT1G14870.2
PCR2
PLANT CADMIUM RESISTANCE 2
arTal_v1_Chr1_-_5129731_5129731 2.34 AT1G14870.1
PCR2
PLANT CADMIUM RESISTANCE 2
arTal_v1_Chr4_-_1559412_1559437 2.34 AT4G03510.3
AT4G03510.4
AT4G03510.1
AT4G03510.2
RMA1
RING membrane-anchor 1
arTal_v1_Chr4_+_13391293_13391344 2.33 AT4G26530.2
AT4G26530.1
FBA5
Aldolase superfamily protein
arTal_v1_Chr4_+_13390754_13390754 2.30 AT4G26530.3
FBA5
Aldolase superfamily protein
arTal_v1_Chr1_-_7906969_7906969 2.30 AT1G22400.1
UGT85A1
UDP-Glycosyltransferase superfamily protein
arTal_v1_Chr5_+_2803833_2803957 2.30 AT5G08640.1
AT5G08640.2
FLS1
flavonol synthase 1
arTal_v1_Chr3_-_5175523_5175523 2.29 AT3G15356.1
AT3G15356
Legume lectin family protein
arTal_v1_Chr2_+_13820909_13820909 2.28 AT2G32550.3
AT2G32550.1
AT2G32550
Cell differentiation, Rcd1-like protein
arTal_v1_Chr4_+_7439115_7439115 2.28 AT4G12550.1
AIR1
Auxin-Induced in Root cultures 1
arTal_v1_Chr5_-_20016857_20016857 2.26 AT5G49360.1
BXL1
beta-xylosidase 1
arTal_v1_Chr4_-_17355891_17356037 2.25 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
arTal_v1_Chr1_+_786832_786832 2.24 AT1G03220.1
AT1G03220
Eukaryotic aspartyl protease family protein
arTal_v1_Chr4_-_524249_524249 2.24 AT4G01250.1
WRKY22
WRKY family transcription factor
arTal_v1_Chr4_+_10375244_10375340 2.23 AT4G18950.1
AT4G18950.2
AT4G18950
Integrin-linked protein kinase family
arTal_v1_Chr5_+_23337832_23337832 2.23 AT5G57625.1
AT5G57625
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
arTal_v1_Chr3_-_18469962_18469962 2.23 AT3G49790.1
AT3G49790
Carbohydrate-binding protein
arTal_v1_Chr1_-_9956960_9956980 2.21 AT1G28370.1
AT1G28370.2
ERF11
ERF domain protein 11
arTal_v1_Chr5_+_5038563_5038563 2.21 AT5G15530.1
BCCP2
biotin carboxyl carrier protein 2
arTal_v1_Chr2_-_16237280_16237280 2.20 AT2G38870.1
AT2G38870
Serine protease inhibitor, potato inhibitor I-type family protein
arTal_v1_Chr1_-_27998821_27998821 2.18 AT1G74500.1
BS1
activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
arTal_v1_Chr1_-_27265806_27265806 2.18 AT1G72430.1
AT1G72430
SAUR-like auxin-responsive protein family
arTal_v1_Chr2_+_16463347_16463347 2.18 AT2G39430.1
AT2G39430
Disease resistance-responsive (dirigent-like protein) family protein
arTal_v1_Chr4_+_13297695_13297803 2.17 AT4G26260.1
AT4G26260.2
MIOX4
myo-inositol oxygenase 4
arTal_v1_Chr1_-_19385533_19385602 2.15 AT1G52100.1
AT1G52100.3
AT1G52100.4
AT1G52100.2
AT1G52100.5
AT1G52100
Mannose-binding lectin superfamily protein
arTal_v1_Chr2_+_6313883_6313883 2.15 AT2G14750.1
APK
APS kinase
arTal_v1_Chr5_-_19629167_19629167 2.14 AT5G48430.1
AT5G48430
Eukaryotic aspartyl protease family protein
arTal_v1_Chr5_-_18371021_18371021 2.12 AT5G45340.2
AT5G45340.1
CYP707A3
cytochrome P450, family 707, subfamily A, polypeptide 3
arTal_v1_Chr5_-_19447149_19447380 2.10 AT5G48000.7
AT5G48000.4
AT5G48000.2
AT5G48000.3
AT5G48000.5
AT5G48000.6
CYP708A2
cytochrome P450, family 708, subfamily A, polypeptide 2
arTal_v1_Chr1_+_6389399_6389399 2.09 AT1G18570.1
MYB51
myb domain protein 51
arTal_v1_Chr1_+_3777236_3777236 2.07 AT1G11260.1
STP1
sugar transporter 1
arTal_v1_Chr1_-_13456336_13456336 2.06 AT1G36060.1
AT1G36060
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_-_10720843_10720843 2.06 AT1G30370.1
DLAH
alpha/beta-Hydrolases superfamily protein
arTal_v1_Chr5_-_17025361_17025361 2.05 AT5G42580.1
CYP705A12
cytochrome P450, family 705, subfamily A, polypeptide 12
arTal_v1_Chr3_-_17910736_17910738 2.04 AT3G48360.3
AT3G48360.1
AT3G48360.2
BT2
BTB and TAZ domain protein 2
arTal_v1_Chr1_+_30383561_30383561 2.03 AT1G80840.1
WRKY40
WRKY DNA-binding protein 40
arTal_v1_Chr3_-_6000447_6000447 2.00 AT3G17520.1
AT3G17520
Late embryogenesis abundant protein (LEA) family protein
arTal_v1_Chr1_-_30404713_30404713 1.99 AT1G80920.1
J8
Chaperone DnaJ-domain superfamily protein
arTal_v1_Chr2_-_8913747_8913747 1.98 AT2G20670.1
AT2G20670
sugar phosphate exchanger, putative (DUF506)
arTal_v1_Chr5_-_22358381_22358413 1.98 AT5G55090.1
AT5G55090.2
MAPKKK15
mitogen-activated protein kinase kinase kinase 15
arTal_v1_Chr5_-_24377206_24377206 1.98 AT5G60660.1
PIP2%3B4
plasma membrane intrinsic protein 2;4
arTal_v1_Chr5_+_20051829_20051829 1.95 AT5G49450.1
bZIP1
basic leucine-zipper 1
arTal_v1_Chr5_-_26607012_26607012 1.94 AT5G66650.1
AT5G66650
calcium uniporter (DUF607)
arTal_v1_Chr4_-_12886902_12887011 1.93 AT4G25100.2
AT4G25100.5
FSD1
Fe superoxide dismutase 1
arTal_v1_Chr2_+_19505827_19505827 1.92 AT2G47540.1
AT2G47540
Pollen Ole e 1 allergen and extensin family protein
arTal_v1_Chr1_-_2190784_2190784 1.92 AT1G07135.1
AT1G07135
glycine-rich protein
arTal_v1_Chr5_+_8042853_8042876 1.91 AT5G23860.1
AT5G23860.2
TUB8
tubulin beta 8
arTal_v1_Chr1_+_8544248_8544308 1.91 AT1G24148.1
AT1G24148.2
AT1G24148
hypothetical protein
arTal_v1_Chr2_+_3618058_3618058 1.89 AT2G08986.1
AT2G08986
hypothetical protein
arTal_v1_Chr1_-_25065446_25065446 1.88 AT1G67110.1
AT1G67110.2
CYP735A2
cytochrome P450, family 735, subfamily A, polypeptide 2
arTal_v1_Chr2_+_16507882_16507882 1.88 AT2G39570.1
ACR9
ACT domain-containing protein
arTal_v1_Chr1_-_26335630_26335630 1.87 AT1G69920.1
GSTU12
glutathione S-transferase TAU 12
arTal_v1_Chr5_-_18780205_18780205 1.87 AT5G46295.1
AT5G46295
transmembrane protein
arTal_v1_Chr1_-_11548016_11548016 1.87 AT1G32100.1
PRR1
pinoresinol reductase 1
arTal_v1_Chr3_+_21059785_21059785 1.85 AT3G56880.1
AT3G56880
VQ motif-containing protein
arTal_v1_Chr2_-_11710128_11710128 1.83 AT2G27370.1
CASP3
Uncharacterized protein family (UPF0497)
arTal_v1_Chr5_+_1672070_1672096 1.82 AT5G05600.1
AT5G05600.2
AT5G05600
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
arTal_v1_Chr5_+_16202142_16202142 1.82 AT5G40460.1
AT5G40460
cyclin-dependent kinase inhibitor SMR3-like protein
arTal_v1_Chr1_-_1662259_1662259 1.80 AT1G05575.1
AT1G05575
transmembrane protein
arTal_v1_Chr3_-_15355494_15355494 1.80 AT3G43430.1
AT3G43430
RING/U-box superfamily protein
arTal_v1_Chr3_+_23182722_23182722 1.80 AT3G62680.1
PRP3
proline-rich protein 3
arTal_v1_Chr3_+_5212984_5212984 1.78 AT3G15450.3
AT3G15450.1
AT3G15450.2
AT3G15450
aluminum induced protein with YGL and LRDR motifs
arTal_v1_Chr1_-_6782216_6782216 1.78 AT1G19610.1
PDF1.4
defensin-like protein
arTal_v1_Chr5_-_1034686_1034686 1.78 AT5G03860.1
MLS
malate synthase
arTal_v1_Chr1_-_8839549_8839609 1.77 AT1G25220.2
AT1G25220.1
ASB1
anthranilate synthase beta subunit 1
arTal_v1_Chr1_-_19493122_19493122 1.76 AT1G52342.1
AT1G52342
hypothetical protein
arTal_v1_Chr2_+_13256091_13256091 1.76 AT2G31090.1
AT2G31090
transmembrane protein
arTal_v1_Chr5_-_5358789_5358789 1.76 AT5G16370.1
AAE5
acyl activating enzyme 5
arTal_v1_Chr4_+_4886962_4886962 1.75 AT4G08040.1
ACS11
1-aminocyclopropane-1-carboxylate synthase 11
arTal_v1_Chr2_-_108803_108829 1.75 AT2G01180.7
AT2G01180.2
AT2G01180.5
AT2G01180.1
AT2G01180.8
AT2G01180.4
AT2G01180.3
PAP1
phosphatidic acid phosphatase 1
arTal_v1_Chr1_-_20015038_20015038 1.75 AT1G53625.1
AT1G53625
hypothetical protein
arTal_v1_Chr5_-_3883111_3883111 1.73 AT5G12020.1
HSP17.6II
17.6 kDa class II heat shock protein
arTal_v1_Chr1_+_25426234_25426234 1.72 AT1G67810.1
SUFE2
sulfur E2
arTal_v1_Chr5_-_7250770_7250770 1.72 AT5G21940.1
AT5G21940
hybrid signal transduction histidine kinase M-like protein
arTal_v1_Chr5_-_1034973_1034973 1.72 AT5G03860.2
MLS
malate synthase
arTal_v1_Chr3_-_18649521_18649521 1.71 AT3G50310.1
MAPKKK20
mitogen-activated protein kinase kinase kinase 20
arTal_v1_Chr1_-_8310916_8310916 1.70 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
arTal_v1_Chr2_+_9903215_9903215 1.70 AT2G23270.1
AT2G23270
transmembrane protein
arTal_v1_Chr4_+_17524461_17524461 1.69 AT4G37240.1
AT4G37240
HTH-type transcriptional regulator
arTal_v1_Chr1_+_10897925_10897925 1.68 AT1G30720.1
AT1G30720
FAD-binding Berberine family protein
arTal_v1_Chr5_-_8181107_8181107 1.68 AT5G24155.2
AT5G24155.3
AT5G24155.1
AT5G24155
FAD/NAD(P)-binding oxidoreductase family protein
arTal_v1_Chr1_+_4084162_4084162 1.68 AT1G12080.1
AT1G12080.2
AT1G12080
Vacuolar calcium-binding protein-like protein
arTal_v1_Chr1_-_28823727_28823727 1.68 AT1G76790.1
IGMT5
O-methyltransferase family protein
arTal_v1_Chr5_+_5078200_5078293 1.67 AT5G15600.1
AT5G15600.2
SP1L4
SPIRAL1-like4
arTal_v1_Chr5_-_8154710_8154710 1.67 AT5G24110.1
WRKY30
WRKY DNA-binding protein 30
arTal_v1_Chr4_-_10423487_10423508 1.67 AT4G19030.3
AT4G19030.1
AT4G19030.2
NLM1
NOD26-like major intrinsic protein 1
arTal_v1_Chr1_-_5864059_5864059 1.67 AT1G17147.1
AT1G17147
VQ motif-containing protein
arTal_v1_Chr1_-_29638773_29638773 1.66 AT1G78830.1
AT1G78830
Curculin-like (mannose-binding) lectin family protein
arTal_v1_Chr2_+_5741592_5741592 1.66 AT2G13790.1
SERK4
somatic embryogenesis receptor-like kinase 4
arTal_v1_Chr3_+_3694956_3694956 1.65 AT3G11690.1
AT3G11690
hypothetical protein
arTal_v1_Chr3_-_6258426_6258426 1.65 AT3G18250.1
AT3G18250
Putative membrane lipoprotein
arTal_v1_Chr5_-_20544857_20544857 1.64 AT5G50450.1
AT5G50450
HCP-like superfamily protein with MYND-type zinc finger
arTal_v1_Chr1_-_27865694_27865694 1.64 AT1G74100.1
SOT16
sulfotransferase 16
arTal_v1_Chr5_+_17984527_17984527 1.62 AT5G44585.1
AT5G44585
hypothetical protein
arTal_v1_Chr5_-_23289635_23289635 1.62 AT5G57510.1
AT5G57510
cotton fiber protein
arTal_v1_Chr2_-_16702336_16702336 1.62 AT2G40000.1
HSPRO2
ortholog of sugar beet HS1 PRO-1 2
arTal_v1_Chr1_+_7346156_7346156 1.62 AT1G21010.1
AT1G21010
poly polymerase
arTal_v1_Chr2_-_7925918_7925918 1.60 AT2G18210.1
AT2G18210
hypothetical protein
arTal_v1_Chr5_-_8186662_8186704 1.60 AT5G24160.2
AT5G24160.1
SQE6
squalene monooxygenase 6
arTal_v1_Chr4_-_1005253_1005305 1.59 AT4G02290.2
AT4G02290.1
GH9B13
glycosyl hydrolase 9B13
arTal_v1_Chr1_+_4864881_4865006 1.58 AT1G14240.2
AT1G14240.4
AT1G14240.1
AT1G14240.3
AT1G14240
GDA1/CD39 nucleoside phosphatase family protein
arTal_v1_Chr3_+_16271511_16271511 1.58 AT3G44720.1
ADT4
arogenate dehydratase 4
arTal_v1_Chr4_+_15098041_15098067 1.58 AT4G30993.2
AT4G30993.1
AT4G30993.3
AT4G30993
Calcineurin-like metallo-phosphoesterase superfamily protein
arTal_v1_Chr5_-_20940895_20940895 1.58 AT5G51550.1
EXL3
EXORDIUM like 3
arTal_v1_Chr1_+_29373803_29373889 1.57 AT1G78090.1
AT1G78090.2
TPPB
trehalose-6-phosphate phosphatase
arTal_v1_Chr1_-_22726190_22726190 1.57 AT1G61590.1
AT1G61590
Protein kinase superfamily protein
arTal_v1_Chr1_+_23199612_23199695 1.57 AT1G62660.2
AT1G62660.1
AT1G62660.3
AT1G62660
Glycosyl hydrolases family 32 protein
arTal_v1_Chr1_-_1696191_1696191 1.56 AT1G05660.1
AT1G05660
Pectin lyase-like superfamily protein
arTal_v1_Chr1_+_4433605_4433605 1.55 AT1G12990.1
AT1G12990
beta-1,4-N-acetylglucosaminyltransferase family protein
arTal_v1_Chr1_+_20604892_20604892 1.54 AT1G55240.1
AT1G55240
proteinase inhibitor I4, serpin (DUF716)
arTal_v1_Chr3_-_20015451_20015451 1.54 AT3G54040.1
AT3G54040
PAR1 protein
arTal_v1_Chr3_+_18941925_18941925 1.53 AT3G50980.1
XERO1
dehydrin xero 1
arTal_v1_Chr3_-_20015653_20015653 1.53 AT3G54040.2
AT3G54040
PAR1 protein
arTal_v1_Chr1_+_12237547_12237547 1.53 AT1G33760.1
AT1G33760
Integrase-type DNA-binding superfamily protein
arTal_v1_Chr1_+_3053698_3053698 1.52 AT1G09460.1
AT1G09460
Carbohydrate-binding X8 domain superfamily protein
arTal_v1_Chr5_-_17005510_17005510 1.51 AT5G42530.1
AT5G42530
hypothetical protein
arTal_v1_Chr4_-_18275017_18275216 1.51 AT4G39260.4
AT4G39260.3
AT4G39260.2
AT4G39260.1
CCR1
cold, circadian rhythm, and RNA binding 1
arTal_v1_Chr5_-_19447866_19447866 1.51 AT5G48000.1
CYP708A2
cytochrome P450, family 708, subfamily A, polypeptide 2
arTal_v1_Chr5_-_23175476_23175495 1.50 AT5G57190.1
AT5G57190.2
PSD2
phosphatidylserine decarboxylase 2
arTal_v1_Chr2_-_16545746_16545746 1.49 AT2G39700.1
EXPA4
expansin A4
arTal_v1_Chr2_+_11178064_11178110 1.49 AT2G26260.1
AT2G26260.2
3BETAHSD/D2
3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
arTal_v1_Chr2_+_10559173_10559173 1.48 AT2G24762.1
GDU4
glutamine dumper 4
arTal_v1_Chr1_-_8983314_8983314 1.47 AT1G25560.1
TEM1
AP2/B3 transcription factor family protein
arTal_v1_Chr3_+_59423_59423 1.47 AT3G01175.1
AT3G01175
transmembrane protein
arTal_v1_Chr2_+_8093220_8093220 1.46 AT2G18670.1
AT2G18670
RING/U-box superfamily protein
arTal_v1_Chr1_-_18322505_18322505 1.45 AT1G49500.2
AT1G49500
transcription initiation factor TFIID subunit 1b-like protein
arTal_v1_Chr1_+_23200591_23200591 1.45 AT1G62660.4
AT1G62660
Glycosyl hydrolases family 32 protein
arTal_v1_Chr1_-_18322284_18322284 1.45 AT1G49500.1
AT1G49500
transcription initiation factor TFIID subunit 1b-like protein
arTal_v1_Chr1_+_24924774_24924774 1.45 AT1G66800.1
AT1G66800
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr1_+_10892445_10892445 1.45 AT1G30700.1
AT1G30700
FAD-binding Berberine family protein
arTal_v1_Chr3_-_5254458_5254562 1.45 AT3G15530.2
AT3G15530.1
AT3G15530
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr4_+_17201922_17201922 1.44 AT4G36410.1
UBC17
ubiquitin-conjugating enzyme 17
arTal_v1_Chr2_+_11566288_11566288 1.44 AT2G27080.1
AT2G27080
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
arTal_v1_Chr1_-_970058_970058 1.44 AT1G03840.2
MGP
C2H2 and C2HC zinc fingers superfamily protein
arTal_v1_Chr2_-_13631929_13631929 1.44 AT2G32020.1
AT2G32020
Acyl-CoA N-acyltransferases (NAT) superfamily protein
arTal_v1_Chr4_+_11907355_11907355 1.44 AT4G22620.1
AT4G22620
SAUR-like auxin-responsive protein family
arTal_v1_Chr4_-_12393982_12393982 1.44 AT4G23810.1
WRKY53
WRKY family transcription factor
arTal_v1_Chr4_+_15382777_15382777 1.44 AT4G31800.1
WRKY18
WRKY DNA-binding protein 18
arTal_v1_Chr2_+_13819352_13819352 1.44 AT2G32550.2
AT2G32550
Cell differentiation, Rcd1-like protein
arTal_v1_Chr1_-_13836954_13836954 1.43 AT1G36622.1
AT1G36622
transmembrane protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT5G56840

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 6.3 GO:0006097 glyoxylate cycle(GO:0006097)
1.2 3.5 GO:0033477 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
1.1 5.3 GO:0019310 inositol catabolic process(GO:0019310)
0.9 3.6 GO:0080003 thalianol metabolic process(GO:0080003)
0.9 2.6 GO:0000050 urea cycle(GO:0000050)
0.8 2.5 GO:0010045 response to nickel cation(GO:0010045)
0.8 2.3 GO:0035404 histone-serine phosphorylation(GO:0035404) histone H3-S10 phosphorylation(GO:0043987)
0.7 2.8 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.7 2.0 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.6 3.8 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.6 2.4 GO:0098609 pollen tube adhesion(GO:0009865) cell-cell adhesion(GO:0098609) multi organism cell adhesion(GO:0098740)
0.6 2.4 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.6 6.0 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.6 3.0 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.6 4.7 GO:0045487 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.6 1.1 GO:0042539 hypotonic salinity response(GO:0042539)
0.5 3.2 GO:0006471 protein ADP-ribosylation(GO:0006471) regulation of starch biosynthetic process(GO:0010581) protein poly-ADP-ribosylation(GO:0070212)
0.5 1.0 GO:1990937 xylan acetylation(GO:1990937)
0.5 1.9 GO:0009305 protein biotinylation(GO:0009305)
0.5 2.3 GO:0071323 cellular response to chitin(GO:0071323)
0.4 0.9 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.4 1.7 GO:0019427 acetyl-CoA biosynthetic process from acetate(GO:0019427)
0.4 1.3 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.4 1.7 GO:0010185 regulation of cellular defense response(GO:0010185)
0.4 0.4 GO:0010254 nectary development(GO:0010254)
0.4 1.6 GO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance(GO:0032260)
0.4 1.2 GO:0033530 raffinose metabolic process(GO:0033530)
0.4 1.2 GO:0015755 hexose transport(GO:0008645) fructose transport(GO:0015755) vacuolar transmembrane transport(GO:0034486)
0.4 3.1 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.4 1.9 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.4 2.2 GO:0051176 positive regulation of sulfur metabolic process(GO:0051176)
0.4 3.3 GO:0015749 monosaccharide transport(GO:0015749)
0.4 1.5 GO:0046373 L-arabinose metabolic process(GO:0046373)
0.4 1.8 GO:0007043 cell-cell junction assembly(GO:0007043)
0.4 1.4 GO:0035264 multicellular organism growth(GO:0035264)
0.4 3.2 GO:0070814 hydrogen sulfide biosynthetic process(GO:0070814)
0.3 0.7 GO:0015840 urea transport(GO:0015840)
0.3 1.0 GO:0048832 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.3 2.7 GO:0009061 anaerobic respiration(GO:0009061)
0.3 1.7 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.3 2.0 GO:0048830 adventitious root development(GO:0048830)
0.3 2.0 GO:0070141 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.3 1.3 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.3 1.3 GO:1990573 potassium ion import across plasma membrane(GO:1990573)
0.3 5.2 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.3 5.5 GO:0071450 removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451)
0.3 5.5 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.3 1.5 GO:0019745 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.3 0.9 GO:0010451 floral meristem growth(GO:0010451)
0.3 1.5 GO:0046622 positive regulation of organ growth(GO:0046622)
0.3 0.9 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.3 2.1 GO:0006597 spermine biosynthetic process(GO:0006597)
0.3 4.1 GO:0006949 syncytium formation(GO:0006949)
0.3 2.3 GO:0016045 detection of bacterium(GO:0016045)
0.3 3.4 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.3 0.9 GO:0010055 atrichoblast differentiation(GO:0010055)
0.3 4.5 GO:0006574 valine catabolic process(GO:0006574)
0.3 3.4 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.3 3.3 GO:0080086 stamen filament development(GO:0080086)
0.3 0.5 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.3 3.8 GO:0031540 regulation of anthocyanin biosynthetic process(GO:0031540)
0.3 1.3 GO:0010226 response to lithium ion(GO:0010226)
0.3 0.8 GO:1902289 negative regulation of defense response to oomycetes(GO:1902289)
0.3 1.8 GO:0090548 response to nitrate starvation(GO:0090548)
0.2 1.0 GO:0001120 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.2 1.2 GO:0097036 regulation of plasma membrane sterol distribution(GO:0097036)
0.2 1.0 GO:0015720 allantoin transport(GO:0015720)
0.2 1.4 GO:0046345 sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345)
0.2 0.7 GO:0060860 regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862)
0.2 1.9 GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning(GO:0060774)
0.2 0.7 GO:0042908 xenobiotic transport(GO:0042908)
0.2 2.0 GO:0048654 anther morphogenesis(GO:0048654) anther wall tapetum morphogenesis(GO:0048655)
0.2 2.9 GO:0046620 regulation of organ growth(GO:0046620)
0.2 2.7 GO:0051865 protein autoubiquitination(GO:0051865)
0.2 2.0 GO:0015918 sterol transport(GO:0015918)
0.2 4.2 GO:2000032 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.2 1.1 GO:0006723 cuticle hydrocarbon biosynthetic process(GO:0006723)
0.2 0.7 GO:0080058 protein deglutathionylation(GO:0080058)
0.2 0.7 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.2 0.6 GO:0010198 synergid death(GO:0010198)
0.2 3.4 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.2 0.2 GO:0010447 response to acidic pH(GO:0010447)
0.2 1.3 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.2 0.6 GO:0044236 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.2 1.1 GO:2000582 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.2 1.0 GO:0051289 protein homotetramerization(GO:0051289)
0.2 3.2 GO:0002238 response to molecule of fungal origin(GO:0002238)
0.2 3.0 GO:0006094 gluconeogenesis(GO:0006094)
0.2 0.7 GO:0002164 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.2 1.9 GO:1901959 positive regulation of cutin biosynthetic process(GO:1901959)
0.2 1.3 GO:0044211 CTP salvage(GO:0044211)
0.2 1.1 GO:0042659 regulation of cell fate specification(GO:0042659)
0.2 0.5 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891) toxin transport(GO:1901998)
0.2 6.1 GO:0010214 seed coat development(GO:0010214)
0.2 0.7 GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity(GO:0043433)
0.2 1.8 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.2 0.7 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.2 0.9 GO:0006449 regulation of translational termination(GO:0006449)
0.2 1.1 GO:0010337 regulation of salicylic acid metabolic process(GO:0010337)
0.2 4.2 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.2 0.5 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.2 3.6 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.2 1.0 GO:0034227 tRNA thio-modification(GO:0034227)
0.2 1.2 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.2 0.9 GO:0050810 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.2 0.8 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.2 2.9 GO:0009697 salicylic acid biosynthetic process(GO:0009697)
0.2 0.3 GO:0055089 fatty acid homeostasis(GO:0055089)
0.2 0.7 GO:0009557 antipodal cell differentiation(GO:0009557)
0.2 5.0 GO:0042335 cuticle development(GO:0042335)
0.2 1.3 GO:0045903 positive regulation of translational fidelity(GO:0045903)
0.2 0.2 GO:2000573 positive regulation of DNA biosynthetic process(GO:2000573)
0.2 1.0 GO:0072334 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.2 1.5 GO:0046337 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.2 10.4 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.2 1.3 GO:0035265 organ growth(GO:0035265)
0.2 1.1 GO:0080187 floral organ senescence(GO:0080187)
0.2 1.6 GO:1990066 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.2 0.9 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.2 0.9 GO:0046209 nitric oxide metabolic process(GO:0046209)
0.2 0.5 GO:0080026 response to indolebutyric acid(GO:0080026)
0.2 1.5 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.2 2.6 GO:0051762 sesquiterpene biosynthetic process(GO:0051762)
0.2 2.6 GO:0033238 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.2 0.8 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.1 0.6 GO:0006729 tetrahydrobiopterin biosynthetic process(GO:0006729) tetrahydrobiopterin metabolic process(GO:0046146)
0.1 1.2 GO:0050667 transsulfuration(GO:0019346) homocysteine metabolic process(GO:0050667)
0.1 2.2 GO:0048766 root hair initiation(GO:0048766)
0.1 0.6 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.1 0.4 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.1 5.3 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.1 1.3 GO:0009799 specification of symmetry(GO:0009799)
0.1 1.7 GO:0033358 UDP-L-arabinose biosynthetic process(GO:0033358) extracellular polysaccharide biosynthetic process(GO:0045226) capsule polysaccharide biosynthetic process(GO:0045227) capsule organization(GO:0045230) extracellular polysaccharide metabolic process(GO:0046379)
0.1 0.6 GO:0090065 regulation of production of siRNA involved in RNA interference(GO:0090065)
0.1 2.3 GO:0080027 response to herbivore(GO:0080027)
0.1 1.0 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.1 1.2 GO:0015976 carbon utilization(GO:0015976)
0.1 2.4 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.1 0.7 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.1 0.4 GO:0030100 regulation of endocytosis(GO:0030100)
0.1 0.5 GO:0010351 lithium ion transport(GO:0010351)
0.1 0.4 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.1 2.0 GO:0046348 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.1 0.5 GO:0070509 calcium ion import(GO:0070509)
0.1 1.7 GO:0010037 response to carbon dioxide(GO:0010037)
0.1 1.8 GO:0009113 purine nucleobase biosynthetic process(GO:0009113)
0.1 2.0 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.1 0.8 GO:0044205 'de novo' UMP biosynthetic process(GO:0044205)
0.1 2.2 GO:0010093 specification of floral organ identity(GO:0010093)
0.1 0.8 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.1 0.6 GO:0070125 mitochondrial translational elongation(GO:0070125)
0.1 14.5 GO:0010200 response to chitin(GO:0010200)
0.1 0.6 GO:0015940 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.1 3.0 GO:0019915 lipid storage(GO:0019915)
0.1 0.5 GO:2000082 regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.1 1.3 GO:0032409 regulation of transporter activity(GO:0032409)
0.1 3.1 GO:0009685 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.1 1.0 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.1 1.6 GO:0071491 red light signaling pathway(GO:0010161) cellular response to red light(GO:0071491)
0.1 0.5 GO:0007155 cell adhesion(GO:0007155) biological adhesion(GO:0022610)
0.1 1.4 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.1 0.7 GO:0070550 establishment of mitotic sister chromatid cohesion(GO:0034087) establishment of protein localization to chromosome(GO:0070199) rDNA condensation(GO:0070550) establishment of protein localization to chromatin(GO:0071169) transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.1 0.3 GO:0042770 signal transduction in response to DNA damage(GO:0042770)
0.1 0.7 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.1 0.4 GO:1902025 nitrate import(GO:1902025)
0.1 0.4 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.1 0.3 GO:0070206 protein trimerization(GO:0070206) protein homotrimerization(GO:0070207)
0.1 0.5 GO:0006106 fumarate metabolic process(GO:0006106)
0.1 0.9 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.1 0.5 GO:0008215 spermine metabolic process(GO:0008215)
0.1 0.8 GO:0009554 megasporogenesis(GO:0009554)
0.1 3.8 GO:0016126 sterol biosynthetic process(GO:0016126)
0.1 2.0 GO:0010193 response to ozone(GO:0010193)
0.1 0.8 GO:0070301 cellular response to hydrogen peroxide(GO:0070301)
0.1 1.6 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.1 0.3 GO:0019695 choline metabolic process(GO:0019695)
0.1 2.6 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.1 0.4 GO:0033512 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
0.1 0.9 GO:0033314 mitotic DNA replication checkpoint(GO:0033314)
0.1 1.1 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.1 0.8 GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c(GO:0006122)
0.1 1.4 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.1 0.6 GO:0032012 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.1 0.4 GO:0000256 allantoin catabolic process(GO:0000256)
0.1 2.4 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.1 0.4 GO:1902288 regulation of defense response to oomycetes(GO:1902288) positive regulation of defense response to oomycetes(GO:1902290)
0.1 0.5 GO:0052317 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.1 0.5 GO:0010508 positive regulation of autophagy(GO:0010508)
0.1 0.3 GO:0072337 modified amino acid transport(GO:0072337)
0.1 4.9 GO:0010102 post-embryonic root morphogenesis(GO:0010101) lateral root morphogenesis(GO:0010102)
0.1 0.3 GO:0071484 cellular response to light intensity(GO:0071484)
0.1 0.6 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 0.4 GO:0050482 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.1 2.4 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.1 0.4 GO:0033385 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.1 0.8 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.1 0.2 GO:0045740 positive regulation of DNA replication(GO:0045740)
0.1 0.8 GO:0048859 formation of organ boundary(GO:0010160) formation of anatomical boundary(GO:0048859)
0.1 0.2 GO:0036079 GDP-mannose transport(GO:0015784) purine nucleotide-sugar transport(GO:0036079) purine nucleotide-sugar transmembrane transport(GO:0090480) GDP-mannose transmembrane transport(GO:1990570)
0.1 14.0 GO:0071456 cellular response to hypoxia(GO:0071456)
0.1 0.1 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.1 0.2 GO:0008153 para-aminobenzoic acid biosynthetic process(GO:0008153)
0.1 0.3 GO:0046786 viral replication complex formation and maintenance(GO:0046786)
0.1 1.0 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 0.7 GO:0010262 somatic embryogenesis(GO:0010262)
0.1 0.4 GO:0035434 copper ion transmembrane transport(GO:0035434)
0.1 0.6 GO:0010230 alternative respiration(GO:0010230)
0.1 1.8 GO:0001932 regulation of protein phosphorylation(GO:0001932)
0.1 0.2 GO:0033506 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.1 0.5 GO:0080117 secondary growth(GO:0080117) lateral growth(GO:0080190)
0.1 1.5 GO:0010166 wax metabolic process(GO:0010166)
0.1 1.4 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.1 0.8 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.1 0.6 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.1 0.4 GO:0000244 spliceosomal tri-snRNP complex assembly(GO:0000244)
0.1 0.2 GO:0000973 posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000973)
0.1 0.7 GO:0046246 terpene biosynthetic process(GO:0046246)
0.1 4.9 GO:0045490 pectin catabolic process(GO:0045490)
0.1 0.3 GO:0010396 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.1 1.0 GO:0010227 floral organ abscission(GO:0010227)
0.1 0.9 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.1 1.1 GO:0010152 pollen maturation(GO:0010152)
0.1 0.2 GO:0009650 UV protection(GO:0009650)
0.1 1.7 GO:0042147 retrograde transport, endosome to Golgi(GO:0042147)
0.1 0.6 GO:0090114 COPII-coated vesicle budding(GO:0090114)
0.1 1.0 GO:0006817 phosphate ion transport(GO:0006817)
0.0 0.5 GO:1902183 regulation of shoot apical meristem development(GO:1902183)
0.0 0.5 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.1 GO:0031120 snRNA pseudouridine synthesis(GO:0031120)
0.0 0.5 GO:0002764 pattern recognition receptor signaling pathway(GO:0002221) immune response-activating signal transduction(GO:0002757) innate immune response-activating signal transduction(GO:0002758) immune response-regulating signaling pathway(GO:0002764)
0.0 1.0 GO:0010492 maintenance of shoot apical meristem identity(GO:0010492)
0.0 0.2 GO:0009804 coumarin metabolic process(GO:0009804)
0.0 0.4 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.1 GO:0010338 leaf formation(GO:0010338)
0.0 0.8 GO:1905177 tracheary element differentiation(GO:1905177)
0.0 0.3 GO:0032890 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.0 0.2 GO:0006552 leucine catabolic process(GO:0006552)
0.0 0.3 GO:0015691 cadmium ion transport(GO:0015691)
0.0 0.2 GO:1902626 assembly of large subunit precursor of preribosome(GO:1902626)
0.0 0.6 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.0 0.9 GO:0006282 regulation of DNA repair(GO:0006282)
0.0 0.5 GO:0030308 negative regulation of cell growth(GO:0030308)
0.0 1.0 GO:0010449 root meristem growth(GO:0010449)
0.0 0.2 GO:0090481 pyrimidine nucleotide-sugar transmembrane transport(GO:0090481)
0.0 0.2 GO:0071423 malate transmembrane transport(GO:0071423)
0.0 0.8 GO:0006863 purine nucleobase transport(GO:0006863)
0.0 0.1 GO:0006747 FAD biosynthetic process(GO:0006747) flavin adenine dinucleotide biosynthetic process(GO:0072388)
0.0 0.1 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.0 0.5 GO:0006538 glutamate catabolic process(GO:0006538)
0.0 0.6 GO:0080154 regulation of fertilization(GO:0080154) regulation of double fertilization forming a zygote and endosperm(GO:0080155)
0.0 0.2 GO:1903428 positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.0 0.1 GO:0010394 homogalacturonan biosynthetic process(GO:0010289) homogalacturonan metabolic process(GO:0010394)
0.0 1.1 GO:0032508 DNA duplex unwinding(GO:0032508)
0.0 0.4 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0 0.2 GO:0015850 organic hydroxy compound transport(GO:0015850)
0.0 0.6 GO:0043269 regulation of ion transport(GO:0043269)
0.0 0.1 GO:0009727 detection of ethylene stimulus(GO:0009727)
0.0 0.5 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.2 GO:0051650 vesicle localization(GO:0051648) establishment of vesicle localization(GO:0051650)
0.0 2.2 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 1.2 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.0 0.7 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.0 1.2 GO:0010043 response to zinc ion(GO:0010043)
0.0 0.1 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.0 1.9 GO:0000725 recombinational repair(GO:0000725)
0.0 0.1 GO:0010500 transmitting tissue development(GO:0010500)
0.0 0.5 GO:0031048 chromatin silencing by small RNA(GO:0031048)
0.0 0.2 GO:0010018 far-red light signaling pathway(GO:0010018) cellular response to far red light(GO:0071490)
0.0 1.1 GO:0006906 vesicle fusion(GO:0006906)
0.0 0.6 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.2 GO:0007021 tubulin complex assembly(GO:0007021)
0.0 0.4 GO:0010821 regulation of mitochondrion organization(GO:0010821)
0.0 0.2 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.0 0.7 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.0 0.4 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.7 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.7 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.3 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.1 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.7 GO:0016575 histone deacetylation(GO:0016575)
0.0 1.0 GO:0009809 lignin biosynthetic process(GO:0009809)
0.0 0.5 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.1 GO:1903312 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.0 1.0 GO:0009736 cytokinin-activated signaling pathway(GO:0009736)
0.0 0.2 GO:0060321 acceptance of pollen(GO:0060321)
0.0 0.1 GO:0048578 positive regulation of long-day photoperiodism, flowering(GO:0048578)
0.0 1.0 GO:0008037 cell recognition(GO:0008037) recognition of pollen(GO:0048544)
0.0 0.5 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 0.3 GO:0033750 ribosomal subunit export from nucleus(GO:0000054) ribosome localization(GO:0033750) establishment of ribosome localization(GO:0033753) rRNA-containing ribonucleoprotein complex export from nucleus(GO:0071428)
0.0 0.5 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 0.3 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.5 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.1 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.2 GO:0000338 protein deneddylation(GO:0000338)
0.0 0.7 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.0 0.1 GO:0000012 single strand break repair(GO:0000012)
0.0 0.1 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.4 GO:0007186 G-protein coupled receptor signaling pathway(GO:0007186)
0.0 0.2 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.2 GO:0070475 rRNA base methylation(GO:0070475)
0.0 0.3 GO:0007267 cell-cell signaling(GO:0007267)
0.0 1.1 GO:0043413 protein glycosylation(GO:0006486) glycoprotein biosynthetic process(GO:0009101) macromolecule glycosylation(GO:0043413)
0.0 0.2 GO:0010215 cellulose microfibril organization(GO:0010215)
0.0 1.2 GO:0043086 negative regulation of catalytic activity(GO:0043086)
0.0 0.3 GO:0007029 endoplasmic reticulum organization(GO:0007029)
0.0 0.4 GO:0009567 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.0 0.0 GO:0010541 acropetal auxin transport(GO:0010541)
0.0 0.2 GO:0006298 mismatch repair(GO:0006298)
0.0 0.3 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.1 GO:0009083 branched-chain amino acid catabolic process(GO:0009083)
0.0 0.5 GO:0016485 protein processing(GO:0016485)
0.0 0.1 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.0 0.1 GO:0015693 magnesium ion transport(GO:0015693)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.7 GO:0009514 glyoxysome(GO:0009514)
0.8 2.4 GO:0070382 exocytic vesicle(GO:0070382)
0.6 2.5 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.6 2.4 GO:0016461 unconventional myosin complex(GO:0016461)
0.6 2.3 GO:0032133 chromosome passenger complex(GO:0032133)
0.4 2.2 GO:0071818 BAT3 complex(GO:0071818)
0.4 1.1 GO:0031080 nuclear pore outer ring(GO:0031080)
0.3 1.0 GO:0016323 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.3 1.0 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.2 1.8 GO:0005784 Sec61 translocon complex(GO:0005784)
0.2 2.4 GO:0048226 Casparian strip(GO:0048226)
0.2 0.6 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.2 1.1 GO:0030286 dynein complex(GO:0030286)
0.2 1.7 GO:0030076 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.2 0.7 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.2 4.4 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.2 1.2 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.2 1.0 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.1 38.4 GO:0031225 anchored component of membrane(GO:0031225)
0.1 0.5 GO:0032044 DSIF complex(GO:0032044)
0.1 0.5 GO:0097344 Rix1 complex(GO:0097344)
0.1 0.7 GO:0030062 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.1 0.7 GO:0035861 site of double-strand break(GO:0035861)
0.1 0.8 GO:0005884 actin filament(GO:0005884)
0.1 1.1 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.1 2.5 GO:0005811 lipid particle(GO:0005811)
0.1 0.3 GO:0030870 Mre11 complex(GO:0030870)
0.1 0.5 GO:0031380 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.1 0.3 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.1 0.6 GO:0070390 transcription export complex 2(GO:0070390)
0.1 0.7 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.1 0.8 GO:1903561 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.1 0.2 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130)
0.1 0.2 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.1 0.9 GO:0031902 late endosome membrane(GO:0031902)
0.1 0.4 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.1 0.9 GO:0045239 tricarboxylic acid cycle enzyme complex(GO:0045239)
0.1 2.2 GO:0005764 lysosome(GO:0005764)
0.1 0.3 GO:0043076 megasporocyte nucleus(GO:0043076) polar nucleus(GO:0043078)
0.1 0.8 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.1 0.4 GO:0051286 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.1 0.7 GO:0045298 tubulin complex(GO:0045298)
0.1 0.3 GO:0005776 autophagosome(GO:0005776)
0.0 0.6 GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) fumarate reductase complex(GO:0045283)
0.0 0.2 GO:0005640 nuclear outer membrane(GO:0005640)
0.0 0.6 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.1 GO:0000782 telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783)
0.0 0.3 GO:0010168 ER body(GO:0010168)
0.0 84.8 GO:0005576 extracellular region(GO:0005576)
0.0 0.4 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.0 2.4 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 0.6 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.7 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 1.9 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.0 1.0 GO:0090406 pollen tube(GO:0090406)
0.0 0.7 GO:0008287 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 0.4 GO:0009574 preprophase band(GO:0009574)
0.0 0.3 GO:0030119 AP-type membrane coat adaptor complex(GO:0030119)
0.0 0.9 GO:0030176 integral component of endoplasmic reticulum membrane(GO:0030176)
0.0 1.1 GO:0009705 plant-type vacuole membrane(GO:0009705)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 9.7 GO:0016984 ribulose-bisphosphate carboxylase activity(GO:0016984)
1.2 3.5 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
1.1 5.3 GO:0050113 inositol oxygenase activity(GO:0050113)
1.0 2.9 GO:0008909 isochorismate synthase activity(GO:0008909)
0.9 6.3 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.8 2.5 GO:0009374 biotin binding(GO:0009374)
0.8 3.2 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.7 2.2 GO:0051738 xanthophyll binding(GO:0051738)
0.7 0.7 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.7 5.3 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.6 1.9 GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.6 1.9 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.6 4.9 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.6 4.7 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.6 1.7 GO:0015292 uniporter activity(GO:0015292)
0.6 2.3 GO:0035175 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.5 2.7 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.5 1.6 GO:0047364 desulfoglucosinolate sulfotransferase activity(GO:0047364)
0.5 1.6 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.5 1.5 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.5 1.9 GO:0018271 biotin-[acetyl-CoA-carboxylase] ligase activity(GO:0004077) biotin-protein ligase activity(GO:0018271)
0.5 2.3 GO:0008430 selenium binding(GO:0008430)
0.5 1.4 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.5 1.4 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.4 2.7 GO:0015105 arsenite transmembrane transporter activity(GO:0015105)
0.4 3.5 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.4 1.7 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.4 5.5 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.4 4.3 GO:0004784 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.4 1.2 GO:0015377 cation:chloride symporter activity(GO:0015377)
0.4 2.3 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.4 1.1 GO:0009924 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.4 1.8 GO:0003987 acetate-CoA ligase activity(GO:0003987)
0.4 2.5 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.4 1.8 GO:0004049 anthranilate synthase activity(GO:0004049)
0.4 3.2 GO:0004020 adenylylsulfate kinase activity(GO:0004020)
0.3 1.4 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.3 2.4 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.3 1.7 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.3 2.7 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.3 3.9 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.3 1.0 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.3 1.6 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.3 1.2 GO:0052578 alpha-farnesene synthase activity(GO:0052578)
0.3 0.9 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.3 5.0 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.3 1.2 GO:0005460 UDP-glucose transmembrane transporter activity(GO:0005460)
0.3 1.2 GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0033764)
0.3 1.4 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.3 0.9 GO:0080104 3-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080102) 5-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080104) 7-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080106)
0.3 1.4 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.3 0.8 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.3 2.4 GO:0017048 Rho GTPase binding(GO:0017048)
0.3 0.8 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.3 3.8 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.3 2.9 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.3 3.1 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.3 1.8 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.3 5.9 GO:0102338 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.3 11.0 GO:0008171 O-methyltransferase activity(GO:0008171)
0.3 2.6 GO:0004806 triglyceride lipase activity(GO:0004806)
0.3 0.8 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.2 1.5 GO:0003988 acetyl-CoA C-acyltransferase activity(GO:0003988)
0.2 1.0 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.2 4.5 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.2 2.6 GO:0008199 ferric iron binding(GO:0008199)
0.2 2.3 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.2 0.2 GO:1901474 azole transmembrane transporter activity(GO:1901474)
0.2 3.4 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.2 0.9 GO:0015089 high-affinity copper ion transmembrane transporter activity(GO:0015089)
0.2 2.6 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.2 0.8 GO:0052659 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.2 5.5 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.2 0.6 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.2 1.1 GO:0051959 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.2 1.5 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.2 1.2 GO:0004766 spermidine synthase activity(GO:0004766)
0.2 4.1 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.2 4.7 GO:0010333 terpene synthase activity(GO:0010333)
0.2 1.5 GO:0042299 lupeol synthase activity(GO:0042299)
0.2 1.3 GO:0004849 uridine kinase activity(GO:0004849)
0.2 2.2 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.2 1.3 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.2 0.7 GO:0008297 single-stranded DNA exodeoxyribonuclease activity(GO:0008297)
0.2 1.2 GO:0031177 phosphopantetheine binding(GO:0031177)
0.2 0.5 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.2 1.2 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.2 1.0 GO:0015563 allantoin uptake transmembrane transporter activity(GO:0005274) uracil:cation symporter activity(GO:0015505) uptake transmembrane transporter activity(GO:0015563)
0.2 0.6 GO:0004385 guanylate kinase activity(GO:0004385)
0.2 2.1 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.2 1.4 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.2 0.8 GO:0015002 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.2 2.0 GO:0008061 chitin binding(GO:0008061)
0.1 0.6 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 1.0 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.1 1.0 GO:0016161 beta-amylase activity(GO:0016161)
0.1 2.9 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.1 0.9 GO:0052655 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.1 2.8 GO:0005199 structural constituent of cell wall(GO:0005199)
0.1 1.7 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.1 0.5 GO:0019534 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.1 7.1 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.1 1.3 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 3.6 GO:0008810 cellulase activity(GO:0008810)
0.1 2.6 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.1 0.6 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.1 1.1 GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713)
0.1 0.8 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.1 3.9 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.1 0.4 GO:0043812 phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.1 5.8 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.1 1.6 GO:0046556 alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 2.7 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.1 0.8 GO:0033549 MAP kinase phosphatase activity(GO:0033549)
0.1 3.2 GO:0032934 sterol binding(GO:0032934)
0.1 0.8 GO:0008121 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.1 1.2 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.1 0.6 GO:0016801 hydrolase activity, acting on ether bonds(GO:0016801)
0.1 0.7 GO:0003826 alpha-ketoacid dehydrogenase activity(GO:0003826)
0.1 0.8 GO:0008878 glucose-1-phosphate adenylyltransferase activity(GO:0008878)
0.1 1.5 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.1 2.7 GO:0010427 abscisic acid binding(GO:0010427)
0.1 0.4 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.1 0.4 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.1 0.5 GO:0004333 fumarate hydratase activity(GO:0004333)
0.1 1.4 GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912)
0.1 3.2 GO:0005179 hormone activity(GO:0005179)
0.1 0.7 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.1 0.4 GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
0.1 6.3 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.1 0.6 GO:0003933 GTP cyclohydrolase activity(GO:0003933)
0.1 1.9 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.1 0.9 GO:0009378 four-way junction helicase activity(GO:0009378)
0.1 1.0 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.1 6.4 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.1 6.4 GO:0015144 carbohydrate transmembrane transporter activity(GO:0015144)
0.1 0.5 GO:0016436 rRNA (uridine) methyltransferase activity(GO:0016436) rRNA (uridine-N3-)-methyltransferase activity(GO:0070042)
0.1 1.6 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.1 3.2 GO:0044390 ubiquitin-like protein conjugating enzyme binding(GO:0044390)
0.1 2.4 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.1 2.1 GO:0097602 cullin family protein binding(GO:0097602)
0.1 1.1 GO:0031559 lanosterol synthase activity(GO:0000250) oxidosqualene cyclase activity(GO:0031559)
0.1 0.5 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.1 0.8 GO:0051920 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.1 0.6 GO:0045431 flavonol synthase activity(GO:0045431)
0.1 2.6 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 0.9 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.1 0.5 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.1 0.8 GO:0031127 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.1 0.7 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.1 0.2 GO:0005458 GDP-mannose transmembrane transporter activity(GO:0005458)
0.1 0.9 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.1 1.8 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.1 0.4 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 0.5 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.1 0.3 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.1 0.5 GO:0004834 tryptophan synthase activity(GO:0004834)
0.1 0.4 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.1 0.8 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.1 0.8 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.1 2.0 GO:0031593 polyubiquitin binding(GO:0031593)
0.1 0.4 GO:0019825 oxygen binding(GO:0019825)
0.1 1.0 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.1 0.6 GO:0017136 NAD-dependent histone deacetylase activity(GO:0017136) histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) NAD-dependent protein deacetylase activity(GO:0034979)
0.1 2.6 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.1 0.9 GO:0008195 phosphatidate phosphatase activity(GO:0008195)
0.1 0.2 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.1 0.5 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.5 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.1 0.3 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
0.1 0.6 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.1 0.6 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.1 0.2 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.1 0.3 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.1 0.4 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 1.0 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.3 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 1.1 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 1.4 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.0 0.6 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.5 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 0.2 GO:0004165 dodecenoyl-CoA delta-isomerase activity(GO:0004165)
0.0 0.4 GO:0016208 AMP binding(GO:0016208)
0.0 0.5 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.2 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.0 0.8 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 1.0 GO:0031386 protein tag(GO:0031386)
0.0 0.2 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.1 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.0 0.5 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.8 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.9 GO:0031490 chromatin DNA binding(GO:0031490)
0.0 0.3 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.3 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 1.8 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 2.1 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 2.0 GO:0004857 enzyme inhibitor activity(GO:0004857)
0.0 0.1 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 3.1 GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709)
0.0 0.5 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.2 GO:0009011 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.0 0.3 GO:0005102 receptor binding(GO:0005102)
0.0 3.4 GO:0019001 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)
0.0 0.2 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.1 GO:0051740 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.0 0.2 GO:0042887 amide transmembrane transporter activity(GO:0042887)
0.0 0.1 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.2 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.0 0.7 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.1 GO:0004127 cytidylate kinase activity(GO:0004127)
0.0 0.2 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0 1.0 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.3 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.3 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.8 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.1 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.0 0.3 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 4.4 GO:0016746 transferase activity, transferring acyl groups(GO:0016746)
0.0 1.1 GO:0051213 dioxygenase activity(GO:0051213)
0.0 0.1 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.0 0.6 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 0.1 GO:0003862 3-isopropylmalate dehydrogenase activity(GO:0003862)
0.0 0.0 GO:0004618 phosphoglycerate kinase activity(GO:0004618)
0.0 0.5 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.1 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.0 0.2 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.1 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.0 0.4 GO:0051087 chaperone binding(GO:0051087)
0.0 0.2 GO:0031420 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.1 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.1 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 0.1 GO:0003997 acyl-CoA oxidase activity(GO:0003997)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.0 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.6 1.8 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.6 1.8 PID IL12 2PATHWAY IL12-mediated signaling events
0.6 3.4 NABA MATRISOME ASSOCIATED Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors
0.4 2.9 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins
0.2 0.9 ST ERK1 ERK2 MAPK PATHWAY ERK1/ERK2 MAPK Pathway
0.2 0.8 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling
0.2 1.9 PID E2F PATHWAY E2F transcription factor network
0.1 0.3 PID ARF 3PATHWAY Arf1 pathway
0.1 0.3 PID P73PATHWAY p73 transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.9 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.6 1.8 REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION Genes involved in Apoptosis induced DNA fragmentation
0.5 3.3 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.4 0.4 REACTOME COPI MEDIATED TRANSPORT Genes involved in COPI Mediated Transport
0.3 1.7 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.3 2.3 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.2 0.8 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System
0.2 0.5 REACTOME REGULATION OF INSULIN SECRETION Genes involved in Regulation of Insulin Secretion
0.1 0.7 REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND Genes involved in Removal of the Flap Intermediate from the C-strand
0.1 0.7 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.1 1.1 REACTOME CLASS I MHC MEDIATED ANTIGEN PROCESSING PRESENTATION Genes involved in Class I MHC mediated antigen processing & presentation
0.1 0.5 REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA Genes involved in Processing of Capped Intron-Containing Pre-mRNA
0.0 0.1 REACTOME PI METABOLISM Genes involved in PI Metabolism
0.0 0.2 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.0 0.3 REACTOME GENERIC TRANSCRIPTION PATHWAY Genes involved in Generic Transcription Pathway
0.0 0.2 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation