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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G61380
Z-value: 0.89
Transcription factors associated with AT5G61380
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G61380
|
AT5G61380 | CCT motif -containing response regulator protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TOC1 | arTal_v1_Chr5_+_24674963_24674963 | 0.79 | 8.2e-04 | Click! |
Activity profile of AT5G61380 motif
Sorted Z-values of AT5G61380 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_19245591_19245684 | 2.77 |
AT2G46830.1
AT2G46830.2 |
CCA1
|
circadian clock associated 1 |
| arTal_v1_Chr2_+_19246681_19246681 | 2.56 |
AT2G46830.3
|
CCA1
|
circadian clock associated 1 |
| arTal_v1_Chr1_-_37757_37871 | 2.22 |
AT1G01060.3
AT1G01060.2 AT1G01060.4 AT1G01060.1 AT1G01060.6 AT1G01060.7 AT1G01060.5 |
LHY
|
Homeodomain-like superfamily protein |
| arTal_v1_Chr2_+_13381767_13381767 | 2.20 |
AT2G31380.1
|
STH
|
salt tolerance homologue |
| arTal_v1_Chr1_-_156011_156011 | 1.42 |
AT1G01420.1
|
UGT72B3
|
UDP-glucosyl transferase 72B3 |
| arTal_v1_Chr1_-_156178_156178 | 1.38 |
AT1G01420.2
|
UGT72B3
|
UDP-glucosyl transferase 72B3 |
| arTal_v1_Chr4_+_15544800_15544800 | 1.35 |
AT4G32190.1
|
AT4G32190
|
Myosin heavy chain-related protein |
| arTal_v1_Chr4_-_9779939_9779939 | 1.30 |
AT4G17550.1
|
G3Pp4
|
Major facilitator superfamily protein |
| arTal_v1_Chr1_-_37230_37230 | 1.16 |
AT1G01060.8
|
LHY
|
Homeodomain-like superfamily protein |
| arTal_v1_Chr5_+_579744_579852 | 1.12 |
AT5G02580.1
AT5G02580.3 AT5G02580.2 |
AT5G02580
|
argininosuccinate lyase |
| arTal_v1_Chr5_-_25920254_25920254 | 1.11 |
AT5G64840.1
|
ABCF5
|
general control non-repressible 5 |
| arTal_v1_Chr1_+_2152798_2152880 | 0.94 |
AT1G07010.1
AT1G07010.2 AT1G07010.3 |
SLP1
|
Calcineurin-like metallo-phosphoesterase superfamily protein |
| arTal_v1_Chr5_-_4392429_4392429 | 0.88 |
AT5G13630.1
|
GUN5
|
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) |
| arTal_v1_Chr5_-_4392227_4392227 | 0.88 |
AT5G13630.2
|
GUN5
|
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) |
| arTal_v1_Chr1_-_467873_467880 | 0.85 |
AT1G02340.2
AT1G02340.1 |
HFR1
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| arTal_v1_Chr5_-_24953232_24953362 | 0.84 |
AT5G62130.2
AT5G62130.3 AT5G62130.1 AT5G62130.4 |
AT5G62130
|
Per1-like family protein |
| arTal_v1_Chr5_-_19312595_19312595 | 0.67 |
AT5G47650.1
AT5G47650.2 |
NUDT2
|
nudix hydrolase homolog 2 |
| arTal_v1_Chr2_+_19486842_19486842 | 0.64 |
AT2G47490.1
|
NDT1
|
NAD+ transporter 1 |
| arTal_v1_Chr4_+_13904265_13904265 | 0.64 |
AT4G27940.1
|
MTM1
|
manganese tracking factor for mitochondrial SOD2 |
| arTal_v1_Chr5_-_19312155_19312222 | 0.60 |
AT5G47650.5
AT5G47650.4 |
NUDT2
|
nudix hydrolase homolog 2 |
| arTal_v1_Chr5_+_18835605_18835618 | 0.55 |
AT5G46450.2
AT5G46450.1 AT5G46450.3 |
AT5G46450
|
Disease resistance protein (TIR-NBS-LRR class) family |
| arTal_v1_Chr4_-_16950620_16950620 | 0.50 |
AT4G35780.1
|
STY17
|
ACT-like protein tyrosine kinase family protein |
| arTal_v1_Chr3_-_21100459_21100519 | 0.50 |
AT3G57020.2
AT3G57020.1 |
AT3G57020
|
Calcium-dependent phosphotriesterase superfamily protein |
| arTal_v1_Chr4_+_9601348_9601348 | 0.49 |
AT4G17080.1
|
AT4G17080
|
Histone H3 K4-specific methyltransferase SET7/9 family protein |
| arTal_v1_Chr5_+_206432_206432 | 0.43 |
AT5G01520.2
AT5G01520.1 |
AIRP2
|
RING/U-box superfamily protein |
| arTal_v1_Chr5_+_26854022_26854022 | 0.41 |
AT5G67300.1
|
MYBR1
|
myb domain protein r1 |
| arTal_v1_Chr4_+_2618372_2618372 | 0.38 |
AT4G05100.1
|
MYB74
|
myb domain protein 74 |
| arTal_v1_Chr5_-_19312747_19312747 | 0.36 |
AT5G47650.3
|
NUDT2
|
nudix hydrolase homolog 2 |
| arTal_v1_Chr1_-_5955037_5955143 | 0.33 |
AT1G17370.2
AT1G17370.1 |
UBP1B
|
oligouridylate binding protein 1B |
| arTal_v1_Chr3_+_6840281_6840281 | 0.29 |
AT3G19680.1
|
AT3G19680
|
hypothetical protein (DUF1005) |
| arTal_v1_Chr5_-_144863_144863 | 0.28 |
AT5G01340.1
|
mSFC1
|
Mitochondrial substrate carrier family protein |
| arTal_v1_Chr1_+_11827359_11827467 | 0.27 |
AT1G32700.1
AT1G32700.2 |
AT1G32700
|
PLATZ transcription factor family protein |
| arTal_v1_Chr3_+_151725_151725 | 0.24 |
AT3G01400.1
|
AT3G01400
|
ARM repeat superfamily protein |
| arTal_v1_Chr4_-_6840036_6840036 | 0.22 |
AT4G11220.1
|
BTI2
|
VIRB2-interacting protein 2 |
| arTal_v1_Chr1_-_27595142_27595197 | 0.21 |
AT1G73390.4
AT1G73390.3 AT1G73390.5 AT1G73390.2 |
AT1G73390
|
Endosomal targeting BRO1-like domain-containing protein |
| arTal_v1_Chr3_-_21830207_21830207 | 0.17 |
AT3G59060.3
|
PIL6
|
phytochrome interacting factor 3-like 6 |
| arTal_v1_Chr3_-_21830507_21830630 | 0.15 |
AT3G59060.1
AT3G59060.4 |
PIL6
|
phytochrome interacting factor 3-like 6 |
| arTal_v1_Chr3_-_18559326_18559326 | 0.14 |
AT3G50060.1
|
MYB77
|
myb domain protein 77 |
| arTal_v1_Chr4_-_18077369_18077369 | 0.13 |
AT4G38700.1
|
AT4G38700
|
Disease resistance-responsive (dirigent-like protein) family protein |
| arTal_v1_Chr1_-_27594510_27594615 | 0.12 |
AT1G73390.1
AT1G73390.7 |
AT1G73390
|
Endosomal targeting BRO1-like domain-containing protein |
| arTal_v1_Chr2_+_17728479_17728479 | 0.11 |
AT2G42580.1
|
TTL3
|
tetratricopetide-repeat thioredoxin-like 3 |
| arTal_v1_Chr5_+_25921402_25921402 | 0.11 |
AT5G64850.1
|
AT5G64850
|
sorbin/SH3 domain protein |
| arTal_v1_Chr5_-_265633_265633 | 0.11 |
AT5G01710.1
|
AT5G01710
|
methyltransferase |
| arTal_v1_Chr1_-_3272110_3272110 | 0.10 |
AT1G10020.1
|
AT1G10020
|
formin-like protein (DUF1005) |
| arTal_v1_Chr3_-_21830837_21830837 | 0.10 |
AT3G59060.2
|
PIL6
|
phytochrome interacting factor 3-like 6 |
| arTal_v1_Chr5_+_4392937_4392937 | 0.09 |
AT5G13640.1
AT5G13640.2 |
PDAT
|
phospholipid:diacylglycerol acyltransferase |
| arTal_v1_Chr3_-_21471694_21471694 | 0.08 |
AT3G57990.1
|
AT3G57990
|
hypothetical protein |
| arTal_v1_Chr1_-_28318362_28318375 | 0.07 |
AT1G75450.1
AT1G75450.2 |
CKX5
|
cytokinin oxidase 5 |
| arTal_v1_Chr5_+_4394283_4394283 | 0.05 |
AT5G13640.3
|
PDAT
|
phospholipid:diacylglycerol acyltransferase |
| arTal_v1_Chr3_+_9867652_9867652 | 0.03 |
AT3G26810.1
|
AFB2
|
auxin signaling F-box 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G61380
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 8.7 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.2 | 0.6 | GO:0043132 | NAD transport(GO:0043132) |
| 0.2 | 2.2 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 0.6 | GO:1901562 | response to paraquat(GO:1901562) |
| 0.1 | 0.3 | GO:0015742 | alpha-ketoglutarate transport(GO:0015742) |
| 0.1 | 1.3 | GO:0072506 | phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506) |
| 0.1 | 0.5 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.1 | 1.3 | GO:0009585 | phototransduction(GO:0007602) red, far-red light phototransduction(GO:0009585) |
| 0.0 | 0.2 | GO:0071786 | endoplasmic reticulum tubular network organization(GO:0071786) |
| 0.0 | 0.8 | GO:0006506 | GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506) |
| 0.0 | 1.8 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 1.1 | GO:0009624 | response to nematode(GO:0009624) |
| 0.0 | 0.1 | GO:0009823 | cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | GO:0010007 | magnesium chelatase complex(GO:0010007) |
| 0.0 | 0.2 | GO:0098827 | endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827) |
| 0.0 | 0.8 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 7.5 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.3 | 1.8 | GO:0051003 | magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003) |
| 0.2 | 0.6 | GO:0052629 | phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
| 0.1 | 1.6 | GO:0000210 | NAD+ diphosphatase activity(GO:0000210) |
| 0.0 | 0.1 | GO:0046027 | phospholipid:diacylglycerol acyltransferase activity(GO:0046027) |
| 0.0 | 2.8 | GO:0080043 | quercetin 3-O-glucosyltransferase activity(GO:0080043) |
| 0.0 | 0.6 | GO:0051184 | cofactor transporter activity(GO:0051184) |
| 0.0 | 0.5 | GO:0016844 | strictosidine synthase activity(GO:0016844) |
| 0.0 | 0.9 | GO:0030145 | manganese ion binding(GO:0030145) |
| 0.0 | 0.1 | GO:0019139 | cytokinin dehydrogenase activity(GO:0019139) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |