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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT5G63790
Z-value: 0.23
Transcription factors associated with AT5G63790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G63790
|
AT5G63790 | NAC domain containing protein 102 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC102 | arTal_v1_Chr5_-_25528013_25528013 | 0.60 | 2.3e-02 | Click! |
Activity profile of AT5G63790 motif
Sorted Z-values of AT5G63790 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_16310768_16310815 | 0.32 |
AT4G34050.1
AT4G34050.2 |
CCoAOMT1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| arTal_v1_Chr4_+_16310409_16310409 | 0.31 |
AT4G34050.3
|
CCoAOMT1
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| arTal_v1_Chr1_-_19161552_19161552 | 0.27 |
AT1G51680.3
AT1G51680.2 |
4CL1
|
4-coumarate:CoA ligase 1 |
| arTal_v1_Chr1_-_28302728_28302728 | 0.25 |
AT1G75410.3
AT1G75410.1 |
BLH3
|
BEL1-like homeodomain 3 |
| arTal_v1_Chr1_-_19161737_19161737 | 0.25 |
AT1G51680.1
|
4CL1
|
4-coumarate:CoA ligase 1 |
| arTal_v1_Chr1_-_28302571_28302571 | 0.21 |
AT1G75410.2
|
BLH3
|
BEL1-like homeodomain 3 |
| arTal_v1_Chr2_-_15589369_15589369 | 0.21 |
AT2G37090.1
|
IRX9
|
Nucleotide-diphospho-sugar transferases superfamily protein |
| arTal_v1_Chr2_-_17060652_17060652 | 0.15 |
AT2G40890.1
|
CYP98A3
|
cytochrome P450, family 98, subfamily A, polypeptide 3 |
| arTal_v1_Chr3_+_6744377_6744377 | 0.15 |
AT3G19450.1
|
ATCAD4
|
GroES-like zinc-binding alcohol dehydrogenase family protein |
| arTal_v1_Chr4_-_16063070_16063251 | 0.15 |
AT4G33330.2
AT4G33330.1 AT4G33330.5 AT4G33330.3 AT4G33330.4 |
PGSIP3
|
plant glycogenin-like starch initiation protein 3 |
| arTal_v1_Chr4_+_13723610_13723610 | 0.08 |
AT4G27435.1
|
AT4G27435
|
fiber (DUF1218) |
| arTal_v1_Chr1_+_22836327_22836327 | 0.04 |
AT1G61820.3
|
BGLU46
|
beta glucosidase 46 |
| arTal_v1_Chr5_-_24422274_24422274 | 0.01 |
AT5G60720.1
|
AT5G60720
|
electron transporter, putative (Protein of unknown function, DUF547) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G63790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | GO:0009805 | coumarin biosynthetic process(GO:0009805) |
| 0.0 | 0.4 | GO:0010413 | glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417) |
| 0.0 | 0.5 | GO:0048510 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | GO:0042409 | caffeoyl-CoA O-methyltransferase activity(GO:0042409) |
| 0.1 | 0.2 | GO:0080116 | glucuronoxylan glucuronosyltransferase activity(GO:0080116) |
| 0.1 | 0.2 | GO:0046409 | p-coumarate 3-hydroxylase activity(GO:0046409) |
| 0.1 | 0.2 | GO:0047517 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517) |
| 0.0 | 0.5 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
| 0.0 | 0.2 | GO:0052747 | sinapyl alcohol dehydrogenase activity(GO:0052747) |