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SARS-CoV-2 Analysis Results (GEO series: GSE147507)

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Results for GCCUGUC

Z-value: 0.31

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miRNA associated with seed GCCUGUC

NamemiRBASE accession
hsa-miR-214-5p
MIMAT0004564

Activity profile of GCCUGUC motif

Sorted Z-values of GCCUGUC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr20_+_10199468 0.43 ENST00000254976.2
ENST00000304886.2
SNAP25
synaptosomal-associated protein, 25kDa
chr1_-_23857698 0.30 ENST00000361729.2
E2F2
E2F transcription factor 2
chr10_-_71892555 0.28 ENST00000307864.1
AIFM2
apoptosis-inducing factor, mitochondrion-associated, 2
chr14_-_35182994 0.27 ENST00000341223.3
CFL2
cofilin 2 (muscle)
chr2_+_27070964 0.27 ENST00000288699.6
DPYSL5
dihydropyrimidinase-like 5
chr10_+_101088836 0.26 ENST00000356713.4
CNNM1
cyclin M1
chr7_-_35077653 0.26 ENST00000310974.4
DPY19L1
dpy-19-like 1 (C. elegans)
chr11_-_57283159 0.21 ENST00000533263.1
ENST00000278426.3
SLC43A1
solute carrier family 43 (amino acid system L transporter), member 1
chr1_+_39957292 0.20 ENST00000331593.5
BMP8A
bone morphogenetic protein 8a
chr6_-_39197226 0.19 ENST00000359534.3
KCNK5
potassium channel, subfamily K, member 5
chr2_-_19558373 0.18 ENST00000272223.2
OSR1
odd-skipped related transciption factor 1
chr15_-_65715401 0.18 ENST00000352385.2
IGDCC4
immunoglobulin superfamily, DCC subclass, member 4
chr11_+_76494253 0.18 ENST00000333090.4
TSKU
tsukushi, small leucine rich proteoglycan
chr2_+_36582857 0.18 ENST00000280527.2
CRIM1
cysteine rich transmembrane BMP regulator 1 (chordin-like)
chr16_-_85722530 0.17 ENST00000253462.3
GINS2
GINS complex subunit 2 (Psf2 homolog)
chr11_+_14665263 0.17 ENST00000282096.4
PDE3B
phosphodiesterase 3B, cGMP-inhibited
chr7_-_27239703 0.17 ENST00000222753.4
HOXA13
homeobox A13
chr2_+_25015968 0.16 ENST00000380834.2
ENST00000473706.1
CENPO
centromere protein O
chrX_-_71351678 0.16 ENST00000609883.1
ENST00000545866.1
RGAG4
retrotransposon gag domain containing 4
chr10_-_118032697 0.16 ENST00000439649.3
GFRA1
GDNF family receptor alpha 1
chr6_+_17281573 0.14 ENST00000379052.5
RBM24
RNA binding motif protein 24
chr9_-_74980113 0.14 ENST00000376962.5
ENST00000376960.4
ENST00000237937.3
ZFAND5
zinc finger, AN1-type domain 5
chr1_-_244013384 0.14 ENST00000366539.1
AKT3
v-akt murine thymoma viral oncogene homolog 3
chr11_+_48002076 0.14 ENST00000418331.2
ENST00000440289.2
PTPRJ
protein tyrosine phosphatase, receptor type, J
chr2_-_197457335 0.13 ENST00000260983.3
HECW2
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
chr5_+_167718604 0.12 ENST00000265293.4
WWC1
WW and C2 domain containing 1
chr3_-_114790179 0.12 ENST00000462705.1
ZBTB20
zinc finger and BTB domain containing 20
chr1_+_245133062 0.12 ENST00000366523.1
EFCAB2
EF-hand calcium binding domain 2
chr19_+_39616410 0.11 ENST00000602004.1
ENST00000599470.1
ENST00000321944.4
ENST00000593480.1
ENST00000358301.3
ENST00000593690.1
ENST00000599386.1
PAK4
p21 protein (Cdc42/Rac)-activated kinase 4
chr6_+_44187242 0.11 ENST00000393844.1
SLC29A1
solute carrier family 29 (equilibrative nucleoside transporter), member 1
chr17_-_36956155 0.10 ENST00000269554.3
PIP4K2B
phosphatidylinositol-5-phosphate 4-kinase, type II, beta
chr7_-_19157248 0.10 ENST00000242261.5
TWIST1
twist family bHLH transcription factor 1
chr2_-_217560248 0.09 ENST00000233813.4
IGFBP5
insulin-like growth factor binding protein 5
chr2_-_220025548 0.09 ENST00000356853.5
NHEJ1
nonhomologous end-joining factor 1
chr17_+_2240775 0.09 ENST00000268989.3
ENST00000426855.2
SGSM2
small G protein signaling modulator 2
chr12_-_56652111 0.08 ENST00000267116.7
ANKRD52
ankyrin repeat domain 52
chr9_-_117568365 0.08 ENST00000374045.4
TNFSF15
tumor necrosis factor (ligand) superfamily, member 15
chr17_+_30264014 0.08 ENST00000322652.5
ENST00000580398.1
SUZ12
SUZ12 polycomb repressive complex 2 subunit
chr17_+_46184911 0.08 ENST00000580219.1
ENST00000452859.2
ENST00000393405.2
ENST00000439357.2
ENST00000359238.2
SNX11
sorting nexin 11
chr5_-_146833485 0.07 ENST00000398514.3
DPYSL3
dihydropyrimidinase-like 3
chr12_-_54673871 0.07 ENST00000209875.4
CBX5
chromobox homolog 5
chr1_+_180199393 0.07 ENST00000263726.2
LHX4
LIM homeobox 4
chr12_-_121342170 0.07 ENST00000353487.2
SPPL3
signal peptide peptidase like 3
chr2_-_97535708 0.07 ENST00000305476.5
SEMA4C
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
chr3_+_152017181 0.07 ENST00000498502.1
ENST00000324196.5
ENST00000545754.1
ENST00000357472.3
MBNL1
muscleblind-like splicing regulator 1
chrX_+_24483338 0.06 ENST00000379162.4
ENST00000441463.2
PDK3
pyruvate dehydrogenase kinase, isozyme 3
chrX_+_49644470 0.06 ENST00000508866.2
USP27X
ubiquitin specific peptidase 27, X-linked
chr3_+_32859510 0.06 ENST00000383763.5
TRIM71
tripartite motif containing 71, E3 ubiquitin protein ligase
chr5_-_137090028 0.06 ENST00000314940.4
HNRNPA0
heterogeneous nuclear ribonucleoprotein A0
chr11_-_6704513 0.06 ENST00000532203.1
ENST00000288937.6
MRPL17
mitochondrial ribosomal protein L17
chr11_-_6633799 0.06 ENST00000299424.4
TAF10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
chr10_+_124913793 0.05 ENST00000368865.4
ENST00000538238.1
ENST00000368859.2
BUB3
BUB3 mitotic checkpoint protein
chr22_-_42466782 0.05 ENST00000396398.3
ENST00000403363.1
ENST00000402937.1
NAGA
N-acetylgalactosaminidase, alpha-
chr19_+_41768401 0.05 ENST00000352456.3
ENST00000595018.1
ENST00000597725.1
HNRNPUL1
heterogeneous nuclear ribonucleoprotein U-like 1
chr14_+_75348592 0.05 ENST00000334220.4
DLST
dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
chr17_-_39890893 0.05 ENST00000393939.2
ENST00000347901.4
ENST00000341193.5
ENST00000310778.5
HAP1
huntingtin-associated protein 1
chr15_+_77712993 0.04 ENST00000336216.4
ENST00000381714.3
ENST00000558651.1
HMG20A
high mobility group 20A
chr4_+_55095264 0.04 ENST00000257290.5
PDGFRA
platelet-derived growth factor receptor, alpha polypeptide
chr8_+_59323823 0.04 ENST00000399598.2
UBXN2B
UBX domain protein 2B
chr11_-_6624801 0.04 ENST00000534343.1
ENST00000254605.6
RRP8
ribosomal RNA processing 8, methyltransferase, homolog (yeast)
chr8_-_71316021 0.04 ENST00000452400.2
NCOA2
nuclear receptor coactivator 2
chr5_-_66492562 0.03 ENST00000256447.4
CD180
CD180 molecule
chr14_-_77787198 0.03 ENST00000261534.4
POMT2
protein-O-mannosyltransferase 2
chr14_+_60715928 0.03 ENST00000395076.4
PPM1A
protein phosphatase, Mg2+/Mn2+ dependent, 1A
chr1_+_145524891 0.03 ENST00000369304.3
ITGA10
integrin, alpha 10
chr2_+_191273052 0.03 ENST00000417958.1
ENST00000432036.1
ENST00000392328.1
MFSD6
major facilitator superfamily domain containing 6
chr14_-_76127519 0.03 ENST00000256319.6
C14orf1
chromosome 14 open reading frame 1
chr1_+_117602925 0.02 ENST00000369466.4
TTF2
transcription termination factor, RNA polymerase II
chr12_-_42632016 0.02 ENST00000442791.3
ENST00000327791.4
ENST00000534854.2
ENST00000380788.3
ENST00000380790.4
YAF2
YY1 associated factor 2
chr5_+_95187934 0.02 ENST00000357880.3
ENST00000436592.1
C5orf27
chromosome 5 open reading frame 27
chr19_+_1752372 0.02 ENST00000382349.4
ONECUT3
one cut homeobox 3
chr20_-_23030296 0.02 ENST00000377103.2
THBD
thrombomodulin
chr15_-_89456593 0.02 ENST00000558029.1
ENST00000539437.1
ENST00000542878.1
ENST00000268151.7
ENST00000566497.1
MFGE8
milk fat globule-EGF factor 8 protein
chr1_+_205012293 0.02 ENST00000331830.4
CNTN2
contactin 2 (axonal)
chr15_-_50558223 0.01 ENST00000267845.3
HDC
histidine decarboxylase
chr17_+_30677136 0.01 ENST00000394670.4
ENST00000321233.6
ENST00000394673.2
ENST00000341711.6
ENST00000579634.1
ENST00000580759.1
ENST00000342555.6
ENST00000577908.1
ENST00000394679.5
ENST00000582165.1
ZNF207
zinc finger protein 207
chr16_-_15982440 0.01 ENST00000575938.1
ENST00000573396.1
ENST00000573968.1
ENST00000575744.1
ENST00000573429.1
ENST00000255759.6
ENST00000575073.1
FOPNL
FGFR1OP N-terminal like
chr2_-_114036488 0.01 ENST00000263335.7
ENST00000397647.3
ENST00000348715.5
ENST00000429538.3
PAX8
paired box 8
chr6_+_44238203 0.01 ENST00000451188.2
TMEM151B
transmembrane protein 151B
chr9_-_127533519 0.01 ENST00000487099.2
ENST00000344523.4
ENST00000373584.3
NR6A1
nuclear receptor subfamily 6, group A, member 1
chr1_+_27153173 0.01 ENST00000374142.4
ZDHHC18
zinc finger, DHHC-type containing 18
chr10_+_99473455 0.01 ENST00000285605.6
MARVELD1
MARVEL domain containing 1
chr15_+_92937058 0.01 ENST00000268164.3
ST8SIA2
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
chr1_-_203055129 0.01 ENST00000241651.4
MYOG
myogenin (myogenic factor 4)
chr6_-_75994536 0.01 ENST00000475111.2
ENST00000230461.6
TMEM30A
transmembrane protein 30A
chr17_-_45266542 0.01 ENST00000531206.1
ENST00000527547.1
ENST00000446365.2
ENST00000575483.1
ENST00000066544.3
CDC27
cell division cycle 27
chr7_-_127983877 0.01 ENST00000415472.2
ENST00000478061.1
ENST00000223073.2
ENST00000459726.1
RBM28
RNA binding motif protein 28
chrX_+_117861535 0.01 ENST00000371666.3
ENST00000371642.1
IL13RA1
interleukin 13 receptor, alpha 1
chr7_-_130080977 0.00 ENST00000223208.5
CEP41
centrosomal protein 41kDa
chr19_+_30433110 0.00 ENST00000542441.2
ENST00000392271.1
URI1
URI1, prefoldin-like chaperone
chr2_-_211036051 0.00 ENST00000418791.1
ENST00000452086.1
ENST00000281772.9
KANSL1L
KAT8 regulatory NSL complex subunit 1-like
chr9_+_77112244 0.00 ENST00000376896.3
RORB
RAR-related orphan receptor B
chr14_-_99947168 0.00 ENST00000331768.5
SETD3
SET domain containing 3
chr3_-_196756646 0.00 ENST00000439320.1
ENST00000296351.4
ENST00000296350.5
MFI2
antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5

Network of associatons between targets according to the STRING database.

First level regulatory network of GCCUGUC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:1990926 short-term synaptic potentiation(GO:1990926)
0.1 0.3 GO:1990086 lens fiber cell apoptotic process(GO:1990086)
0.0 0.2 GO:0023016 osmosensory signaling pathway(GO:0007231) signal transduction by trans-phosphorylation(GO:0023016) kidney smooth muscle tissue development(GO:0072194) pattern specification involved in metanephros development(GO:0072268)
0.0 0.1 GO:2000276 negative regulation of peroxisome proliferator activated receptor signaling pathway(GO:0035359) negative regulation of oxidative phosphorylation uncoupler activity(GO:2000276)
0.0 0.1 GO:1904204 regulation of skeletal muscle hypertrophy(GO:1904204)
0.0 0.3 GO:0018317 protein C-linked glycosylation(GO:0018103) peptidyl-tryptophan modification(GO:0018211) protein C-linked glycosylation via tryptophan(GO:0018317) protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan(GO:0018406)
0.0 0.1 GO:0021526 medial motor column neuron differentiation(GO:0021526)
0.0 0.0 GO:0031587 positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity(GO:0031587)
0.0 0.1 GO:0034499 late endosome to Golgi transport(GO:0034499)
0.0 0.1 GO:0015862 uridine transport(GO:0015862)
0.0 0.2 GO:0000727 double-strand break repair via break-induced replication(GO:0000727)
0.0 0.2 GO:0002024 diet induced thermogenesis(GO:0002024)
0.0 0.3 GO:0030043 actin filament fragmentation(GO:0030043)
0.0 0.2 GO:0033629 negative regulation of cell adhesion mediated by integrin(GO:0033629)
0.0 0.0 GO:1904017 cellular response to Thyroglobulin triiodothyronine(GO:1904017)
0.0 0.2 GO:0021960 anterior commissure morphogenesis(GO:0021960)
0.0 0.2 GO:0030322 stabilization of membrane potential(GO:0030322)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032)
0.0 0.2 GO:0000811 GINS complex(GO:0000811)
0.0 0.1 GO:1990298 mitotic checkpoint complex(GO:0033597) bub1-bub3 complex(GO:1990298)
0.0 0.1 GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458)
0.0 0.1 GO:0032807 DNA ligase IV complex(GO:0032807)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0004174 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.1 0.2 GO:0005010 insulin-like growth factor-activated receptor activity(GO:0005010)
0.1 0.2 GO:0004119 cGMP-inhibited cyclic-nucleotide phosphodiesterase activity(GO:0004119)
0.0 0.1 GO:0016309 1-phosphatidylinositol-5-phosphate 4-kinase activity(GO:0016309)
0.0 0.2 GO:0016167 glial cell-derived neurotrophic factor receptor activity(GO:0016167)
0.0 0.1 GO:0001069 regulatory region RNA binding(GO:0001069)
0.0 0.1 GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740)
0.0 0.2 GO:0070700 BMP receptor binding(GO:0070700)
0.0 0.1 GO:0070097 delta-catenin binding(GO:0070097)
0.0 0.1 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.0 GO:0005018 platelet-derived growth factor alpha-receptor activity(GO:0005018)

Gene overrepresentation in C2:CP category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX Genes involved in CDC6 association with the ORC:origin complex
0.0 0.4 REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Acetylcholine Neurotransmitter Release Cycle