SARS-CoV-2 Analysis Results (GEO series: GSE147507)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
SOX9 | hg19_v2_chr17_+_70117153_70117174 | 0.59 | 5.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_105845674 Show fit | 8.60 |
ENST00000353479.5
ENST00000369733.3 |
collagen, type XVII, alpha 1 |
|
chr17_-_39743139 Show fit | 8.26 |
ENST00000167586.6
|
keratin 14 |
|
chr10_-_105845536 Show fit | 7.22 |
ENST00000393211.3
|
collagen, type XVII, alpha 1 |
|
chr12_-_52887034 Show fit | 7.11 |
ENST00000330722.6
|
keratin 6A |
|
chr1_+_209602156 Show fit | 6.45 |
ENST00000429156.1
ENST00000366437.3 ENST00000603283.1 ENST00000431096.1 |
MIR205 host gene (non-protein coding) |
|
chr15_+_98503922 Show fit | 5.30 |
ENST00000268042.6
|
arrestin domain containing 4 |
|
chr1_-_182360498 Show fit | 4.91 |
ENST00000417584.2
|
glutamate-ammonia ligase |
|
chr16_+_82660560 Show fit | 4.57 |
ENST00000268613.10
ENST00000565636.1 ENST00000431540.3 ENST00000428848.3 |
cadherin 13 |
|
chr3_+_189507460 Show fit | 4.57 |
ENST00000434928.1
|
tumor protein p63 |
|
chr3_+_189507523 Show fit | 4.35 |
ENST00000437221.1
ENST00000392463.2 ENST00000392461.3 ENST00000449992.1 ENST00000456148.1 |
tumor protein p63 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 15.8 | GO:0031581 | hemidesmosome assembly(GO:0031581) |
3.1 | 12.4 | GO:0007499 | ectoderm and mesoderm interaction(GO:0007499) |
0.5 | 11.1 | GO:0060670 | branching involved in labyrinthine layer morphogenesis(GO:0060670) |
1.4 | 8.3 | GO:0045110 | intermediate filament bundle assembly(GO:0045110) |
1.8 | 7.1 | GO:0051710 | cytolysis by symbiont of host cells(GO:0001897) regulation of cytolysis in other organism(GO:0051710) |
0.4 | 6.3 | GO:0055096 | lipoprotein particle mediated signaling(GO:0055095) low-density lipoprotein particle mediated signaling(GO:0055096) |
0.3 | 5.4 | GO:0098789 | pre-mRNA cleavage required for polyadenylation(GO:0098789) |
0.0 | 5.3 | GO:0051443 | positive regulation of ubiquitin-protein transferase activity(GO:0051443) |
0.1 | 5.0 | GO:0097435 | fibril organization(GO:0097435) |
0.7 | 4.9 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 16.4 | GO:0030056 | hemidesmosome(GO:0030056) |
0.0 | 16.4 | GO:0005911 | cell-cell junction(GO:0005911) |
0.2 | 15.4 | GO:0045095 | keratin filament(GO:0045095) |
0.0 | 11.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.1 | 6.9 | GO:0005791 | rough endoplasmic reticulum(GO:0005791) |
0.0 | 6.5 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 6.0 | GO:0005769 | early endosome(GO:0005769) |
0.1 | 5.7 | GO:0002102 | podosome(GO:0002102) |
0.0 | 5.7 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.2 | 5.3 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 13.3 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.8 | 12.4 | GO:0097371 | MDM2/MDM4 family protein binding(GO:0097371) |
0.0 | 10.3 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
1.0 | 6.9 | GO:1990254 | keratin filament binding(GO:1990254) |
0.0 | 6.5 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
1.3 | 6.3 | GO:0055100 | adiponectin binding(GO:0055100) |
0.1 | 5.4 | GO:0005080 | protein kinase C binding(GO:0005080) |
0.1 | 5.0 | GO:0070888 | E-box binding(GO:0070888) |
0.8 | 4.9 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.3 | 4.6 | GO:0004726 | non-membrane spanning protein tyrosine phosphatase activity(GO:0004726) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 20.6 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.3 | 17.9 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 9.5 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 8.5 | PID NOTCH PATHWAY | Notch signaling pathway |
0.1 | 6.7 | PID IL3 PATHWAY | IL3-mediated signaling events |
0.1 | 5.2 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.1 | 5.0 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.1 | 4.0 | PID MYC PATHWAY | C-MYC pathway |
0.0 | 3.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 3.6 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 17.9 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 6.6 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 5.9 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
0.1 | 4.5 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 3.5 | REACTOME DESTABILIZATION OF MRNA BY KSRP | Genes involved in Destabilization of mRNA by KSRP |
0.0 | 3.0 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
0.1 | 2.9 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.1 | 2.8 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.1 | 2.3 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 2.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |