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SARS-CoV-2 Analysis Results (GEO series: GSE147507)

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Results for UGCAGUC

Z-value: 0.27

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miRNA associated with seed UGCAGUC

NamemiRBASE accession
hsa-miR-455-3p.2

Activity profile of UGCAGUC motif

Sorted Z-values of UGCAGUC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_+_175223313 0.51 ENST00000359546.4
CPLX2
complexin 2
chr16_+_50582222 0.44 ENST00000268459.3
NKD1
naked cuticle homolog 1 (Drosophila)
chr12_-_53893399 0.25 ENST00000267079.2
MAP3K12
mitogen-activated protein kinase kinase kinase 12
chr18_+_55102917 0.23 ENST00000491143.2
ONECUT2
one cut homeobox 2
chr8_-_66754172 0.21 ENST00000401827.3
PDE7A
phosphodiesterase 7A
chr15_-_83316254 0.19 ENST00000567678.1
ENST00000450751.2
CPEB1
cytoplasmic polyadenylation element binding protein 1
chr19_+_35759824 0.19 ENST00000343550.5
USF2
upstream transcription factor 2, c-fos interacting
chr16_+_29823552 0.19 ENST00000300797.6
PRRT2
proline-rich transmembrane protein 2
chr3_-_114790179 0.18 ENST00000462705.1
ZBTB20
zinc finger and BTB domain containing 20
chr14_+_93389425 0.17 ENST00000216492.5
ENST00000334654.4
CHGA
chromogranin A (parathyroid secretory protein 1)
chr7_+_101928380 0.16 ENST00000536178.1
SH2B2
SH2B adaptor protein 2
chr3_-_53880401 0.16 ENST00000315251.6
CHDH
choline dehydrogenase
chr10_-_47213626 0.16 ENST00000452145.2
AGAP10
ArfGAP with GTPase domain, ankyrin repeat and PH domain 10
chr2_-_190445499 0.16 ENST00000261024.2
SLC40A1
solute carrier family 40 (iron-regulated transporter), member 1
chr7_+_140774032 0.15 ENST00000565468.1
TMEM178B
transmembrane protein 178B
chr10_+_48189612 0.15 ENST00000453919.1
AGAP9
ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
chr6_+_118228657 0.14 ENST00000360388.4
SLC35F1
solute carrier family 35, member F1
chr19_-_46476791 0.14 ENST00000263257.5
NOVA2
neuro-oncological ventral antigen 2
chr19_+_1000418 0.14 ENST00000234389.3
GRIN3B
glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
chrX_-_74145273 0.13 ENST00000055682.6
KIAA2022
KIAA2022
chr14_-_35182994 0.13 ENST00000341223.3
CFL2
cofilin 2 (muscle)
chr14_-_77495007 0.13 ENST00000238647.3
IRF2BPL
interferon regulatory factor 2 binding protein-like
chrX_-_154493791 0.13 ENST00000369454.3
RAB39B
RAB39B, member RAS oncogene family
chr17_-_61777459 0.12 ENST00000578993.1
ENST00000583211.1
ENST00000259006.3
LIMD2
LIM domain containing 2
chr1_+_66999799 0.12 ENST00000371035.3
ENST00000371036.3
ENST00000371037.4
SGIP1
SH3-domain GRB2-like (endophilin) interacting protein 1
chr3_-_129407535 0.12 ENST00000432054.2
TMCC1
transmembrane and coiled-coil domain family 1
chr3_-_12200851 0.12 ENST00000287814.4
TIMP4
TIMP metallopeptidase inhibitor 4
chr10_-_94003003 0.11 ENST00000412050.4
CPEB3
cytoplasmic polyadenylation element binding protein 3
chr2_+_155554797 0.11 ENST00000295101.2
KCNJ3
potassium inwardly-rectifying channel, subfamily J, member 3
chr2_+_204192942 0.11 ENST00000295851.5
ENST00000261017.5
ABI2
abl-interactor 2
chr7_+_94139105 0.10 ENST00000297273.4
CASD1
CAS1 domain containing 1
chr1_+_11751748 0.10 ENST00000294485.5
DRAXIN
dorsal inhibitory axon guidance protein
chr5_+_127419449 0.10 ENST00000262461.2
ENST00000343225.4
SLC12A2
solute carrier family 12 (sodium/potassium/chloride transporter), member 2
chr8_+_9009202 0.10 ENST00000518496.1
RP11-10A14.4
Uncharacterized protein
chr8_-_119124045 0.09 ENST00000378204.2
EXT1
exostosin glycosyltransferase 1
chr16_-_46865047 0.09 ENST00000394806.2
C16orf87
chromosome 16 open reading frame 87
chr1_-_57045228 0.09 ENST00000371250.3
PPAP2B
phosphatidic acid phosphatase type 2B
chr10_-_88126224 0.08 ENST00000327946.7
GRID1
glutamate receptor, ionotropic, delta 1
chr5_+_122424816 0.08 ENST00000407847.4
PRDM6
PR domain containing 6
chr11_-_70507901 0.08 ENST00000449833.2
ENST00000357171.3
ENST00000449116.2
SHANK2
SH3 and multiple ankyrin repeat domains 2
chr4_-_129208940 0.08 ENST00000296425.5
PGRMC2
progesterone receptor membrane component 2
chr6_-_46293378 0.08 ENST00000330430.6
RCAN2
regulator of calcineurin 2
chr9_-_131790550 0.08 ENST00000372554.4
ENST00000372564.3
SH3GLB2
SH3-domain GRB2-like endophilin B2
chr10_-_60027642 0.08 ENST00000373935.3
IPMK
inositol polyphosphate multikinase
chr7_-_32931387 0.08 ENST00000304056.4
KBTBD2
kelch repeat and BTB (POZ) domain containing 2
chr7_+_28452130 0.08 ENST00000357727.2
CREB5
cAMP responsive element binding protein 5
chrX_-_110038990 0.07 ENST00000372045.1
ENST00000394797.4
CHRDL1
chordin-like 1
chr2_-_2334888 0.07 ENST00000428368.2
ENST00000399161.2
MYT1L
myelin transcription factor 1-like
chr3_+_77088989 0.07 ENST00000461745.1
ROBO2
roundabout, axon guidance receptor, homolog 2 (Drosophila)
chrX_-_54384425 0.07 ENST00000375169.3
ENST00000354646.2
WNK3
WNK lysine deficient protein kinase 3
chr12_-_48398104 0.07 ENST00000337299.6
ENST00000380518.3
COL2A1
collagen, type II, alpha 1
chr3_-_164913777 0.07 ENST00000475390.1
SLITRK3
SLIT and NTRK-like family, member 3
chr15_+_33603147 0.07 ENST00000415757.3
ENST00000389232.4
RYR3
ryanodine receptor 3
chr7_+_119913688 0.07 ENST00000331113.4
KCND2
potassium voltage-gated channel, Shal-related subfamily, member 2
chr9_+_112403088 0.06 ENST00000448454.2
PALM2
paralemmin 2
chr1_+_244214577 0.06 ENST00000358704.4
ZBTB18
zinc finger and BTB domain containing 18
chr1_-_179198702 0.06 ENST00000502732.1
ABL2
c-abl oncogene 2, non-receptor tyrosine kinase
chr2_+_118846008 0.06 ENST00000245787.4
INSIG2
insulin induced gene 2
chr12_+_110906169 0.06 ENST00000377673.5
FAM216A
family with sequence similarity 216, member A
chr10_-_62149433 0.06 ENST00000280772.2
ANK3
ankyrin 3, node of Ranvier (ankyrin G)
chr2_+_149632783 0.06 ENST00000435030.1
KIF5C
kinesin family member 5C
chr14_+_100150622 0.06 ENST00000261835.3
CYP46A1
cytochrome P450, family 46, subfamily A, polypeptide 1
chr4_-_73434498 0.06 ENST00000286657.4
ADAMTS3
ADAM metallopeptidase with thrombospondin type 1 motif, 3
chr20_+_62795827 0.06 ENST00000328439.1
ENST00000536311.1
MYT1
myelin transcription factor 1
chr2_+_166326157 0.05 ENST00000421875.1
ENST00000314499.7
ENST00000409664.1
CSRNP3
cysteine-serine-rich nuclear protein 3
chr9_+_77112244 0.05 ENST00000376896.3
RORB
RAR-related orphan receptor B
chr11_-_72504637 0.05 ENST00000536377.1
ENST00000359373.5
STARD10
ARAP1
StAR-related lipid transfer (START) domain containing 10
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
chr1_+_28052456 0.05 ENST00000373954.6
ENST00000419687.2
FAM76A
family with sequence similarity 76, member A
chr6_+_99282570 0.05 ENST00000328345.5
POU3F2
POU class 3 homeobox 2
chr1_+_167190066 0.05 ENST00000367866.2
ENST00000429375.2
ENST00000452019.1
ENST00000420254.3
ENST00000541643.3
POU2F1
POU class 2 homeobox 1
chr18_+_63418068 0.05 ENST00000397968.2
CDH7
cadherin 7, type 2
chr1_+_21835858 0.05 ENST00000539907.1
ENST00000540617.1
ENST00000374840.3
ALPL
alkaline phosphatase, liver/bone/kidney
chr17_-_38020392 0.05 ENST00000346872.3
ENST00000439167.2
ENST00000377945.3
ENST00000394189.2
ENST00000377944.3
ENST00000377958.2
ENST00000535189.1
ENST00000377952.2
IKZF3
IKAROS family zinc finger 3 (Aiolos)
chr4_-_819901 0.05 ENST00000304062.6
CPLX1
complexin 1
chr1_+_61547894 0.05 ENST00000403491.3
NFIA
nuclear factor I/A
chr4_-_142053952 0.05 ENST00000515673.2
RNF150
ring finger protein 150
chr21_+_22370608 0.05 ENST00000400546.1
NCAM2
neural cell adhesion molecule 2
chr3_+_68053359 0.04 ENST00000478136.1
FAM19A1
family with sequence similarity 19 (chemokine (C-C motif)-like), member A1
chr12_-_50101165 0.04 ENST00000352151.5
ENST00000335154.5
ENST00000293590.5
FMNL3
formin-like 3
chr17_+_18087553 0.04 ENST00000399138.4
ALKBH5
alkB, alkylation repair homolog 5 (E. coli)
chr12_-_16761007 0.04 ENST00000354662.1
ENST00000441439.2
LMO3
LIM domain only 3 (rhombotin-like 2)
chr6_-_16761678 0.04 ENST00000244769.4
ENST00000436367.1
ATXN1
ataxin 1
chr15_+_38544476 0.04 ENST00000299084.4
SPRED1
sprouty-related, EVH1 domain containing 1
chr14_-_55878538 0.04 ENST00000247178.5
ATG14
autophagy related 14
chr16_-_56459354 0.04 ENST00000290649.5
AMFR
autocrine motility factor receptor, E3 ubiquitin protein ligase
chrX_+_154997474 0.04 ENST00000302805.2
SPRY3
sprouty homolog 3 (Drosophila)
chr11_-_86666427 0.04 ENST00000531380.1
FZD4
frizzled family receptor 4
chr1_-_217262969 0.04 ENST00000361525.3
ESRRG
estrogen-related receptor gamma
chr5_+_167718604 0.04 ENST00000265293.4
WWC1
WW and C2 domain containing 1
chrX_-_110513703 0.04 ENST00000324068.1
CAPN6
calpain 6
chr2_-_154335300 0.04 ENST00000325926.3
RPRM
reprimo, TP53 dependent G2 arrest mediator candidate
chr4_-_100575781 0.04 ENST00000511828.1
RP11-766F14.2
Protein LOC285556
chr5_+_56205081 0.04 ENST00000285947.2
ENST00000541720.1
SETD9
SET domain containing 9
chr16_-_73082274 0.03 ENST00000268489.5
ZFHX3
zinc finger homeobox 3
chr15_+_66161871 0.03 ENST00000569896.1
RAB11A
RAB11A, member RAS oncogene family
chr10_+_89622870 0.03 ENST00000371953.3
PTEN
phosphatase and tensin homolog
chr17_-_73775839 0.03 ENST00000592643.1
ENST00000591890.1
ENST00000587171.1
ENST00000254810.4
ENST00000589599.1
H3F3B
H3 histone, family 3B (H3.3B)
chr2_+_228336849 0.03 ENST00000409979.2
ENST00000310078.8
AGFG1
ArfGAP with FG repeats 1
chr1_-_53793584 0.03 ENST00000354412.3
ENST00000347547.2
ENST00000306052.6
LRP8
low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
chr3_-_21792838 0.03 ENST00000281523.2
ZNF385D
zinc finger protein 385D
chr11_-_106889250 0.03 ENST00000526355.2
GUCY1A2
guanylate cyclase 1, soluble, alpha 2
chr11_-_132813566 0.03 ENST00000331898.7
OPCML
opioid binding protein/cell adhesion molecule-like
chr1_+_237205476 0.03 ENST00000366574.2
RYR2
ryanodine receptor 2 (cardiac)
chr12_+_120933904 0.03 ENST00000550178.1
ENST00000550845.1
ENST00000549989.1
ENST00000552870.1
DYNLL1
dynein, light chain, LC8-type 1
chr4_-_42659102 0.02 ENST00000264449.10
ENST00000510289.1
ENST00000381668.5
ATP8A1
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
chr9_-_37034028 0.02 ENST00000520281.1
ENST00000446742.1
ENST00000522003.1
ENST00000523145.1
ENST00000414447.1
ENST00000377847.2
ENST00000377853.2
ENST00000377852.2
ENST00000523241.1
ENST00000520154.1
ENST00000358127.4
PAX5
paired box 5
chr3_+_121903181 0.02 ENST00000498619.1
CASR
calcium-sensing receptor
chr1_+_233086326 0.02 ENST00000366628.5
ENST00000366627.4
NTPCR
nucleoside-triphosphatase, cancer-related
chr2_-_148778258 0.02 ENST00000392857.5
ENST00000457954.1
ENST00000392858.1
ENST00000542387.1
ORC4
origin recognition complex, subunit 4
chr3_-_15106747 0.02 ENST00000449354.2
ENST00000444840.2
ENST00000253686.2
MRPS25
mitochondrial ribosomal protein S25
chr7_+_114055052 0.02 ENST00000462331.1
ENST00000408937.3
ENST00000403559.4
ENST00000350908.4
ENST00000393498.2
ENST00000393495.3
ENST00000378237.3
ENST00000393489.3
FOXP2
forkhead box P2
chr16_-_66785699 0.02 ENST00000258198.2
DYNC1LI2
dynein, cytoplasmic 1, light intermediate chain 2
chr1_+_87794150 0.02 ENST00000370544.5
LMO4
LIM domain only 4
chr11_-_134281812 0.02 ENST00000392580.1
ENST00000312527.4
B3GAT1
beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
chrX_+_17393543 0.02 ENST00000380060.3
NHS
Nance-Horan syndrome (congenital cataracts and dental anomalies)
chr1_+_82266053 0.01 ENST00000370715.1
ENST00000370713.1
ENST00000319517.6
ENST00000370717.2
ENST00000394879.1
ENST00000271029.4
ENST00000335786.5
LPHN2
latrophilin 2
chr14_+_93651358 0.01 ENST00000415050.2
TMEM251
transmembrane protein 251
chr10_+_82297658 0.01 ENST00000339284.2
SH2D4B
SH2 domain containing 4B
chr14_+_57046500 0.01 ENST00000261556.6
TMEM260
transmembrane protein 260
chr17_-_37322013 0.01 ENST00000269586.7
ARL5C
ADP-ribosylation factor-like 5C
chr5_+_149109825 0.01 ENST00000360453.4
ENST00000394320.3
ENST00000309241.5
PPARGC1B
peroxisome proliferator-activated receptor gamma, coactivator 1 beta
chr2_-_159313214 0.01 ENST00000409889.1
ENST00000283233.5
ENST00000536771.1
CCDC148
coiled-coil domain containing 148
chr1_+_36396677 0.01 ENST00000373191.4
ENST00000397828.2
AGO3
argonaute RISC catalytic component 3
chr9_+_15553055 0.01 ENST00000380701.3
CCDC171
coiled-coil domain containing 171
chr4_-_55991752 0.01 ENST00000263923.4
KDR
kinase insert domain receptor (a type III receptor tyrosine kinase)
chr7_-_44365020 0.01 ENST00000395747.2
ENST00000347193.4
ENST00000346990.4
ENST00000258682.6
ENST00000353625.4
ENST00000421607.1
ENST00000424197.1
ENST00000502837.2
ENST00000350811.3
ENST00000395749.2
CAMK2B
calcium/calmodulin-dependent protein kinase II beta
chr3_-_11762202 0.01 ENST00000445411.1
ENST00000404339.1
ENST00000273038.3
VGLL4
vestigial like 4 (Drosophila)
chr10_-_75255724 0.01 ENST00000342558.3
ENST00000360663.5
ENST00000394829.2
ENST00000394828.2
ENST00000394822.2
PPP3CB
protein phosphatase 3, catalytic subunit, beta isozyme
chr3_+_180319918 0.00 ENST00000296015.4
ENST00000491380.1
ENST00000412756.2
ENST00000382584.4
TTC14
tetratricopeptide repeat domain 14
chr1_+_43148059 0.00 ENST00000321358.7
ENST00000332220.6
YBX1
Y box binding protein 1

Network of associatons between targets according to the STRING database.

First level regulatory network of UGCAGUC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0007525 somatic muscle development(GO:0007525)
0.1 0.2 GO:1900738 dense core granule biogenesis(GO:0061110) positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway(GO:1900738) positive regulation of relaxation of cardiac muscle(GO:1901899) regulation of dense core granule biogenesis(GO:2000705)
0.1 0.2 GO:0060345 spleen trabecula formation(GO:0060345) iron cation export(GO:1903414) ferrous iron export(GO:1903988)
0.0 0.2 GO:2000672 negative regulation of motor neuron apoptotic process(GO:2000672)
0.0 0.2 GO:0031455 glycine betaine biosynthetic process from choline(GO:0019285) glycine betaine metabolic process(GO:0031455) glycine betaine biosynthetic process(GO:0031456)
0.0 0.1 GO:1900365 positive regulation of mRNA polyadenylation(GO:1900365)
0.0 0.1 GO:0070634 transepithelial ammonium transport(GO:0070634)
0.0 0.2 GO:0000430 regulation of transcription from RNA polymerase II promoter by glucose(GO:0000430) positive regulation of transcription from RNA polymerase II promoter by glucose(GO:0000432)
0.0 0.5 GO:0031915 positive regulation of synaptic plasticity(GO:0031915)
0.0 0.0 GO:0071529 cementum mineralization(GO:0071529)
0.0 0.1 GO:0030043 actin filament fragmentation(GO:0030043)
0.0 0.1 GO:0048749 compound eye development(GO:0048749)
0.0 0.1 GO:2000253 positive regulation of feeding behavior(GO:2000253)
0.0 0.0 GO:0061300 cerebellum vasculature development(GO:0061300)
0.0 0.2 GO:2000766 negative regulation of cytoplasmic translation(GO:2000766)
0.0 0.0 GO:0061091 regulation of phospholipid translocation(GO:0061091) positive regulation of phospholipid translocation(GO:0061092)
0.0 0.1 GO:0098914 membrane repolarization during atrial cardiac muscle cell action potential(GO:0098914)
0.0 0.1 GO:0050925 negative regulation of negative chemotaxis(GO:0050925) apoptotic process involved in luteolysis(GO:0061364)
0.0 0.1 GO:0051045 negative regulation of membrane protein ectodomain proteolysis(GO:0051045)
0.0 0.0 GO:1903984 positive regulation of TRAIL-activated apoptotic signaling pathway(GO:1903984)
0.0 0.1 GO:0046543 development of secondary female sexual characteristics(GO:0046543)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0070554 synaptobrevin 2-SNAP-25-syntaxin-3-complexin complex(GO:0070554)
0.0 0.1 GO:0016035 zeta DNA polymerase complex(GO:0016035)
0.0 0.1 GO:0032937 SREBP-SCAP-Insig complex(GO:0032937)
0.0 0.0 GO:0097629 extrinsic component of omegasome membrane(GO:0097629)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0097689 iron channel activity(GO:0097689)
0.0 0.1 GO:0008511 sodium:potassium:chloride symporter activity(GO:0008511)
0.0 0.1 GO:0048763 calcium-induced calcium release activity(GO:0048763)
0.0 0.2 GO:0008269 JAK pathway signal transduction adaptor activity(GO:0008269)
0.0 0.1 GO:0086089 voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization(GO:0086089)
0.0 0.1 GO:0051765 inositol tetrakisphosphate kinase activity(GO:0051765)
0.0 0.1 GO:0050509 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity(GO:0050509)
0.0 0.1 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.1 GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity(GO:0008597)
0.0 0.1 GO:0019869 chloride channel inhibitor activity(GO:0019869)
0.0 0.3 GO:0035925 mRNA 3'-UTR AU-rich region binding(GO:0035925)
0.0 0.0 GO:0005173 stem cell factor receptor binding(GO:0005173)