ISMARA results avrg: SARS-CoV-2 Analysis Results (GEO series: GSE147507)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

Sample	Condition
3-9-mock1-13_S20	Mock_treated_A549_cells_IAV_control
3-9-mock2-14_S1	Mock_treated_A549_cells_IAV_control
3-9-wt1-15_S2	IAV_infected_A549_cells
3-9-wt2-16_S16	IAV_infected_A549_cells
CoV002-CoV2-1-indexG4_S4	SARS-CoV-2_infected_A549_cells
CoV002-CoV2-2-indexG5_S5	SARS-CoV-2_infected_A549_cells
CoV002-CoV2-3-indexG6_S6	SARS-CoV-2_infected_A549_cells
CoV002-mock1-indexG1_S1	Mock_treated_A549_cells_SC2_control
CoV002-mock2-indexG2_S2	Mock_treated_A549_cells_SC2_control
CoV002-mock3-indexG3_S3	Mock_treated_A549_cells_SC2_control
SARS004-CoV2-1_S4	SARS-CoV-2_infected_NHBE_cells
SARS004-CoV2-2_S5	SARS-CoV-2_infected_NHBE_cells
SARS004-CoV2-3_S6	SARS-CoV-2_infected_NHBE_cells
SARS004-mock-1_S1	Mock_treated_NHBE_cells
SARS004-mock-2_S2	Mock_treated_NHBE_cells
SARS004-mock-3_S3	Mock_treated_NHBE_cells
svRNA184-mock-1-indexF1_S13	Mock_treated_A549_cells_RSV_control
svRNA184-mock-3-indexF3_S15	Mock_treated_A549_cells_RSV_control
svRNA184-RSV-1-indexF4_S16	RSV_infected_A549_cells
svRNA184-RSV-3-indexH9_S18	RSV_infected_A549_cells

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Motif name	Z-value	Associated genes
ZEB1	14.44	ZEB1 Ensembl NCBI GeneCards UniProt
YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ	10.98	YBX1 Ensembl NCBI GeneCards UniProt FOS Ensembl NCBI GeneCards UniProt NFYC Ensembl NCBI GeneCards UniProt NFYA Ensembl NCBI GeneCards UniProt NFYB Ensembl NCBI GeneCards UniProt CEBPZ Ensembl NCBI GeneCards UniProt
ZNF711_TFAP2A_TFAP2D	10.24	ZNF711 Ensembl NCBI GeneCards UniProt TFAP2A Ensembl NCBI GeneCards UniProt TFAP2D Ensembl NCBI GeneCards UniProt
HNF1A_HNF1B	8.91	HNF1A Ensembl NCBI GeneCards UniProt HNF1B Ensembl NCBI GeneCards UniProt
E2F7_E2F1	8.68	E2F7 Ensembl NCBI GeneCards UniProt E2F1 Ensembl NCBI GeneCards UniProt
E2F2_E2F5	8.58	E2F2 Ensembl NCBI GeneCards UniProt E2F5 Ensembl NCBI GeneCards UniProt
NRF1	8.17	NRF1 Ensembl NCBI GeneCards UniProt
TBP	8.00	TBP Ensembl NCBI GeneCards UniProt
KLF16_SP2	7.55	KLF16 Ensembl NCBI GeneCards UniProt SP2 Ensembl NCBI GeneCards UniProt
IRF2_STAT2_IRF8_IRF1	7.52	IRF2 Ensembl NCBI GeneCards UniProt STAT2 Ensembl NCBI GeneCards UniProt IRF8 Ensembl NCBI GeneCards UniProt IRF1 Ensembl NCBI GeneCards UniProt

Showing 1 to 10 of 603 entries

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Sample name	Condition	Replicate/Batch
Mock_treated_A549_cells_IAV_control
IAV_infected_A549_cells
SARS-CoV-2_infected_A549_cells
Mock_treated_A549_cells_SC2_control
SARS-CoV-2_infected_NHBE_cells
Mock_treated_NHBE_cells
Mock_treated_A549_cells_RSV_control
RSV_infected_A549_cells

Showing 1 to 8 of 8 entries